Commit graph

559 commits

Author SHA1 Message Date
Travis
0bdcb5ab0a fix differenceInPlace test 2020-01-30 13:38:31 -06:00
Todd Gruben
8de32fd62a high level support for difference in place 2020-01-30 08:11:43 -06:00
Travis
bb80d1ed2d tidy comments and remove pilosa dependency 2020-01-22 11:59:32 -06:00
Todd Gruben
f40ced47fa included previous patterns for in place testing 2020-01-21 16:56:33 -06:00
Todd Gruben
99108a1c63 bit remove leaves internals corrupt on empty edge case 2020-01-12 12:00:00 -06:00
Seebs
83aa505673 Simplify unionArrayArray
Also short-circuit it in some cases.
2019-12-17 15:30:56 -06:00
Todd Gruben
ca0247e35b fixed bug in slice container seek 2019-11-26 09:21:52 -06:00
Seebs
36ef82d7ac Zero bitmap storage when reusing it for container-as-bitmap
If you don't do this, it works fine the first time you use a given
storage, but after that you start seeing spurious bits.
2019-11-22 16:02:42 -06:00
Seebs
3b696da34a plugins and precomputed data
So in some cases, when we do a query, the results of one
part of the query are innately shared-across-nodes; for
instance, a hypothetical Distinct query. More generally,
we allow cross-index queries; calls can have "index=foo"
in them.

This patch lets us handle that without duplicating that
query all over. Before we actually start doing the
separate calls, we run the query once from the coordinating
node, then patch the results in, and send relevant subsets
over to each client, etcetera. Also provides slightly
friendlier (and I hope faster) support for converting
bitmaps to/from sets of rows.

We also add an extension interface, and some fancy stuff
to let us define new calls, which use this. They're sort
of tied together because the first extension I wanted to
implement needed precomputed calls. The extension API
lets us create extensions using `pkg/plugin` (with all its
associated limitations, unfortunately), then query them
at load time for functionality.

This also implies some revamping of the argument
validation for PQL, like verifying that functions exist
and knowing things about their argument types.

So basically this is an overly intrusive patch, and would
be better as separate patches, but they're hard to detangle.

add trivial execution-time profiling

What if you could ?profile=true on a query and get some
numbers back? That'd be really cool.

We already have tracing/spans, but right now, those only generate
any data if you have something set up for them to trace to. Add a
fancy wrapper that lets us generate our own tracing data, and dump
it into the request response, if ?profile=true.

add a sample extension, add missing features to extension interface

Implement a naive probabilistic filter extension as an example of
what an extension looks like. In the process, discover multiple
omissions in the bitmap API. Well, I did *say* it was experimental.
2019-11-12 12:14:29 -06:00
Seebs
b25eb8f596 Sources and Generations: tracking mmapped files
This code represents an attempt at providing reliable tracking
of whether any bitmaps still in use have access to a given block
of mmapped data, allowing us to unmap the data when nothing is using
it anymore.

The basic approach is as follows: Each mmap is associated with
a new object, called a "generation". A generation reflects
a particular instance of a given file being mapped. When a
bitmap is built from an mmapped data source, the bitmap is
given a pointer to the generation as its Source. When bitmap
operations combine containers from other bitmaps, they
produce new bitmaps that are tagged with the combined set of
sources.

When we snapshot a file, or for some other reason wish to remap
it, the corresponding bitmap has all its containers updated to
use the new storage, and the bitmap's source is changed. However,
previously-handed-out containers might still have references to the
old storage. Those containers would be in bitmaps with the old
source.

After a bunch of study of trying to reference-count and track
this, I realized: We don't actually need to do that, because we
already have something suitable for determining whether anything
can reach a given object. It's the garbage collector.

So we set a finalizer on the generation object, which handles
unmapping. There's additional sanity-checks here to confirm things
like "we thought this generation should be expiring", and we
track timestamps. We could also have things check whether a
given bitmap's source was marked as obsolete "a while ago", but
that isn't implemented yet.

There's a debug version of this which tracks finalization, creation,
and ending timestamps, and has a call to provide diagnostics for
this. Identical generation IDs get separated out with random
suffixes in this case -- there's sometimes a second or third
instance of the same name due to a holder closing and reopening,
but this basically only happens in testing.

Note that generations are still used even when there's no mmapping,
but unless debugging is turned on, they shouldn't propagate much --
we don't consider a generation to be the source of a bitmap unless
the bitmap actually mapped things from that generation's mmapped
storage, or debugging is on.

There's a couple of other, possibly more subtle, changes and
bug fixes that got caught by the testing on this:
* If a fragment is partially opened and then opening some later
  part fails, we close the earlier parts before returning the
  error so we aren't leaving it partially open.
* Several operations on segments which were requesting that a
  frozen copy of a bitmap be created are now actually *replacing*
  their bitmap with the frozen bitmap, rather than discarding it.
* intersectRunRun, if it decides to create an array or bitmap,
  will yield that container instead of discarding it.

And why all of this? Why, so we can actually implement the thing
where when a fragment has a valid roaring bitmap, but the ops log
is corrupt, we can truncate the corrupt part of the ops log and
reopen it. Which I did.

When the generationdebug build tag is in use, every generation
has a finalizer all the time. When it's not, they only get finalizers
when we expect them to be done -- say, when closing a fragment.
This is because finalizers appear to be possibly-expensive.

There's some logical cleanup to openStorage here, dividing part
of its work into applyStorage and importStorage, which have a common
case for handling "there's no data in this file".
2019-11-12 12:14:29 -06:00
Seebs
6654466033 partially implement truncation of fragments for corrupt ops log
Which is to say don't actually implement it, because openStorage
is too messy right now, but this is the rest of the framework,
and now I'm going to digress into fixing openStorage.
2019-11-12 12:14:29 -06:00
Seebs
ef40a5a219 double the nolint comments, double the checking 2019-10-11 15:17:51 -05:00
Ben Johnson
c7c9c1e1d7
v2.0.0
Co-authored-by: Cody Soyland <codysoyland@gmail.com>
2019-10-08 14:56:17 -06:00
Cody Soyland
8e208569e8 Remove build tag that break enterprise build 2019-09-17 13:34:28 -05:00
Matt Jaffee
b84eada521
rename file and add license header 2019-08-07 08:09:04 -05:00
Matt Jaffee
fba496bc91
generalize test strings and break out old UnmarshalBinary code
(don't use iterator for unmarshalBinary)
2019-08-05 17:39:47 -05:00
Seebs
1d732e4b7f drop unused functions from previous unmarshal implementation 2019-07-25 16:11:57 -05:00
Seebs
b04037900c move to using roaring iterators for UnmarshalBinary
The new roaring iterator used for the remap and importroaring
things could also be used for unmarshalling roaring streams,
and it's a slightly simpler design that doesn't need two passes
through the data. This patch cleans that up a bit, makes it work
better with ops logs, and uses that instead. It appears to
noticably but not immensely reduce the time imports take, but it
also gets us back down to one thing parsing roaring formats.

There are a couple of subtle changes to errors we were testing
for in various tests, and one of the fuzz tests goes away because
it was actually itself an erroneous error message -- it was reporting
the header of a roaring file as an invalid op because the op log
reader was running on the header for roaring files with zero
containers. Oops.
2019-07-25 16:03:18 -05:00
Seebs
e1fbed51b2
use symbolic names for op types, add checks for invalid types 2019-07-01 13:16:03 -05:00
Seebs
17eb13702e
address lint concerns
Addressing various lint.

incrementOpN no longer returns errors, because it no longer waits for
the snapshot, so checking those errors is unnecessary.

Several fields in a common embedded structure were "unused" according
to a naive checker.

Other tiny style things, and one actual unchecked error. Yay linters!
2019-07-01 13:16:02 -05:00
Seebs
cb50a5a48b
revert BSIv2 change impact on Official Roaring
The Pilosa roaring format uses two bytes of its
header, next to the magic number, for a version. The
official roaring format uses them for a container
count, if and only if it's the version of the format
that uses run-length containers.

But if it is, it really does need those bits. Also,
since we never use the official format in our internals
or snapshots, we don't have any reason to support
reading flag bits in it, since the flag bits are used
only for internals of fragments and snapshots. So
we revert the change to support flags with official
roaring bitmaps.

A couple of the fuzz tests happened to rely on this,
and we may find more issues with more fuzzing.
2019-07-01 13:16:02 -05:00
Seebs
67830b74cf
allow importRoaring to work with official format roaring
I didn't think of this, because we don't use it much in the
client. This is a bit hairy because really official roaring
is two fairly different formats, one with runs and one without.
2019-07-01 13:16:02 -05:00
Seebs
4b657c1962
use a queue for snapshot operations
As the size of a fragment grows, the cost of snapshots
increases; with a large fragment getting a lot of large writes,
every write will trigger a snapshot, while any other writes have
to wait for that snapshot before they, too, can trigger a snapshot.

To address this, we introduce a background queue of snapshots.
In general, operations which were omitting their ops log writes
and just snapshotting no longer do; they emit an ops log. This does
mean that, in some cases, the ops log is written and then a snapshot
takes place essentially immediately, which costs us some performance.
However, that only actually happens under very light load; under
heavier load, there's generally going to be multiple writes coalesced
into each snapshot, and the ops log writes for them will be much
cheaper than a full snapshot.
2019-07-01 13:16:02 -05:00
Seebs
b369dace69
remap storage on reopen, instead of remarshalling it
When we do a snapshot, we may end up with containers which are
mmapped to the old file, and containers which have allocated storage
identical to the contents of the new file. It would be nicer if they
were mapped to it. But unmarshalling the entire file is expensive.

Instead, we remap it. (Or, if we couldn't mmap it, just make sure
the old stuff is no longer using the old storage space before we
munmap it.)
2019-07-01 13:16:02 -05:00
Seebs
7f1763e466
address fuzz testing for new op types
The new op type code changed the failure mode for
one of the fuzz test issues -- and the fuzz test revealed a
bug in the code. Fixed the code, updated the test to expect
the newer, better, message.

Also fixed capitalization on the old message.
2019-07-01 13:16:01 -05:00
Seebs
c19b7af0d0
Support direct roaring import operations
We add a new ops log type(pair), AddRoaring and RemoveRoaring,
which set and clear the bits from a provided roaring bitmap.

This also compels us to consider additional sanity checking
during tests.
2019-07-01 13:16:01 -05:00
asvetlik
f54bb5ed2b
Merge branch 'master' into tests 2019-06-26 10:07:20 -05:00
asvetlik
91387ba601
Merge branch 'master' into tests 2019-06-26 09:31:37 -05:00
shaqque
368bb46f45 switched naive_test.go to table driven tests 2019-06-25 17:25:07 -05:00
shaqque
7ba9e18a51 Merge branch 'master' of https://github.com/pilosa/pilosa into fuzz-roaring 2019-06-25 11:22:47 -05:00
shaqque
bc0f86755a added roaringsentinel build tag to check for user errors at build time 2019-06-25 11:16:34 -05:00
shaqque
4f8b3f650e added go-fuzz testing for roaring ops vs naive implementation 2019-06-25 10:47:53 -05:00
asvetlik
fb841c3327
Merge branch 'master' into master 2019-06-25 08:10:40 -05:00
Shaquille Wyan Que
46121da00a
Merge branch 'master' into 2015RoaringBugs 2019-06-24 21:33:57 -05:00
shaqque
86e703637b fixed seeking end of run container iteration bug when next container exists and ensure roaringparanoia panics before other ops 2019-06-24 15:18:03 -05:00
Ashley Svetlik
55aa864cac Fixed malformed offset bug in readOffsets 2019-06-24 12:55:32 -05:00
Ashley Svetlik
eb5d1ae1a4 Fixed malformed offset bug in readWithRuns 2019-06-24 12:51:10 -05:00
asvetlik
464cc1d4ed
Merge branch 'master' into tests 2019-06-24 12:31:14 -05:00
Ashley Svetlik
b0165d7ef9 Revised WithErrors test with err corrections 2019-06-24 12:22:51 -05:00
Ashley Svetlik
6b6249b86a Merge branch 'tests' of https://github.com/asvetlik/pilosa into tests 2019-06-24 12:13:06 -05:00
Ashley Svetlik
7ff26194d8 Corrected err and checked for err 2019-06-24 12:11:44 -05:00
asvetlik
250a3f6fbb
Merge branch 'master' into tests 2019-06-24 09:02:52 -05:00
Ashley Svetlik
8fd23239a1 Formatted Fuzz_test.go 2019-06-21 10:09:20 -05:00
Shaquille Wyan Que
a6ba7e339c fix container iteration bugs in roaring 2019-06-20 20:50:58 -05:00
Ashley Svetlik
031e23cdea Resolved int overflow 2019-06-20 15:02:18 -05:00
Ashley Svetlik
157e910103 Fuzz_test changes 2019-06-20 14:49:04 -05:00
Ashley Svetlik
873486bc1a Removed no containers pilosa format fix 2019-06-20 14:43:55 -05:00
Ashley Svetlik
18d86a204c Revised test for pilosa roaring no containers 2019-06-20 14:36:38 -05:00
Ashley Svetlik
6943b3c5ba Returned files to original version 2019-06-20 14:35:35 -05:00
asvetlik
f772ca4a34
Merge branch 'master' into master 2019-06-19 14:48:48 -05:00