featurebase/roaring
Seebs b25eb8f596 Sources and Generations: tracking mmapped files
This code represents an attempt at providing reliable tracking
of whether any bitmaps still in use have access to a given block
of mmapped data, allowing us to unmap the data when nothing is using
it anymore.

The basic approach is as follows: Each mmap is associated with
a new object, called a "generation". A generation reflects
a particular instance of a given file being mapped. When a
bitmap is built from an mmapped data source, the bitmap is
given a pointer to the generation as its Source. When bitmap
operations combine containers from other bitmaps, they
produce new bitmaps that are tagged with the combined set of
sources.

When we snapshot a file, or for some other reason wish to remap
it, the corresponding bitmap has all its containers updated to
use the new storage, and the bitmap's source is changed. However,
previously-handed-out containers might still have references to the
old storage. Those containers would be in bitmaps with the old
source.

After a bunch of study of trying to reference-count and track
this, I realized: We don't actually need to do that, because we
already have something suitable for determining whether anything
can reach a given object. It's the garbage collector.

So we set a finalizer on the generation object, which handles
unmapping. There's additional sanity-checks here to confirm things
like "we thought this generation should be expiring", and we
track timestamps. We could also have things check whether a
given bitmap's source was marked as obsolete "a while ago", but
that isn't implemented yet.

There's a debug version of this which tracks finalization, creation,
and ending timestamps, and has a call to provide diagnostics for
this. Identical generation IDs get separated out with random
suffixes in this case -- there's sometimes a second or third
instance of the same name due to a holder closing and reopening,
but this basically only happens in testing.

Note that generations are still used even when there's no mmapping,
but unless debugging is turned on, they shouldn't propagate much --
we don't consider a generation to be the source of a bitmap unless
the bitmap actually mapped things from that generation's mmapped
storage, or debugging is on.

There's a couple of other, possibly more subtle, changes and
bug fixes that got caught by the testing on this:
* If a fragment is partially opened and then opening some later
  part fails, we close the earlier parts before returning the
  error so we aren't leaving it partially open.
* Several operations on segments which were requesting that a
  frozen copy of a bitmap be created are now actually *replacing*
  their bitmap with the frozen bitmap, rather than discarding it.
* intersectRunRun, if it decides to create an array or bitmap,
  will yield that container instead of discarding it.

And why all of this? Why, so we can actually implement the thing
where when a fragment has a valid roaring bitmap, but the ops log
is corrupt, we can truncate the corrupt part of the ops log and
reopen it. Which I did.

When the generationdebug build tag is in use, every generation
has a finalizer all the time. When it's not, they only get finalizers
when we expect them to be done -- say, when closing a fragment.
This is because finalizers appear to be possibly-expensive.

There's some logical cleanup to openStorage here, dividing part
of its work into applyStorage and importStorage, which have a common
case for handling "there's no data in this file".
2019-11-12 12:14:29 -06:00
..
testdata cleanup #1622 2018-09-06 16:27:10 -05:00
btree.go double the nolint comments, double the checking 2019-10-11 15:17:51 -05:00
btree_test.go Make containers copy-on-write 2019-05-30 16:36:20 -05:00
container_stash.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00
containers_btree.go Support direct roaring import operations 2019-07-01 13:16:01 -05:00
containers_slice.go Support direct roaring import operations 2019-07-01 13:16:01 -05:00
containers_test.go replaced min code with bmp.iterator 2019-06-11 16:58:32 +03:00
fuzz_test.go generalize test strings and break out old UnmarshalBinary code 2019-08-05 17:39:47 -05:00
fuzzer.go added go-fuzz testing for roaring ops vs naive implementation 2019-06-25 10:47:53 -05:00
generation_debug.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00
generation_nodebug.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00
inst.go Add license headers to files missing them and CI check to verify they are present. Fixes #1633 2019-04-12 11:30:41 -05:00
naive.go added go-fuzz testing for roaring ops vs naive implementation 2019-06-25 10:47:53 -05:00
naive_test.go switched naive_test.go to table driven tests 2019-06-25 17:25:07 -05:00
nop_inst.go double the nolint comments, double the checking 2019-10-11 15:17:51 -05:00
README.md Fixed typo 2019-06-17 16:47:28 -05:00
roaring.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00
roaring_helpers_test.go Make containers copy-on-write 2019-05-30 16:36:20 -05:00
roaring_internal_test.go generalize test strings and break out old UnmarshalBinary code 2019-08-05 17:39:47 -05:00
roaring_nop_paranoia.go Add license headers to files missing them and CI check to verify they are present. Fixes #1633 2019-04-12 11:30:41 -05:00
roaring_nop_sentinel.go switched naive_test.go to table driven tests 2019-06-25 17:25:07 -05:00
roaring_nop_stats.go Add license headers to files missing them and CI check to verify they are present. Fixes #1633 2019-04-12 11:30:41 -05:00
roaring_paranoia.go Add license headers to files missing them and CI check to verify they are present. Fixes #1633 2019-04-12 11:30:41 -05:00
roaring_sentinel.go switched naive_test.go to table driven tests 2019-06-25 17:25:07 -05:00
roaring_stats.go v2.0.0 2019-10-08 14:56:17 -06:00
roaring_test.go v2.0.0 2019-10-08 14:56:17 -06:00
source.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00
unmarshal_binary.go Sources and Generations: tracking mmapped files 2019-11-12 12:14:29 -06:00

The Fuzzer

For complete documentation on go-fuzz, please see: https://github.com/dvyukov/go-fuzz

The fuzzer in relation to the roaring package checks the Bitmap.UnmarshalBinary function found in roaring.go. In order to use the fuzzer, you can follow these steps:

cd $GOPATH/src/github.com/pilosa/pilosa/roaring

go-fuzz-build ./

You must now make the workdir/corpus directory. This is achieved by:

mkdir workdir/corpus

The fuzzer needs some input to start the fuzzing with. Copy some sample Pilosa fragments into the workdir/corpus folder. For example:

cp ~/.pilosa/my-index/my-field/views/standard/fragments/0 workdir/corpus

Once you have copied your sample inputs, you are ready to run the fuzzer:

go-fuzz -bin=roaring-fuzz.zip -workdir=workdir -func=FuzzBitmapUnmarshalBinary

Understanding the Fuzzer Output

The fuzzer will output something similar to the follwoing:

2015/04/25 12:39:53 workers: 8, corpus: 124 (12s ago), crashers: 37, restarts: 1/15, execs: 35342 (2941/sec), cover: 403, uptime: 12s

The most important part of the output is the crashers and cover. The crashers records how many combinations were discovered that fail and the cover tells you how much code is being accessed. For a complete explanation of the output, please see: https://github.com/dvyukov/go-fuzz.

The fuzzer will document the crashers in a folder labeled "crashers." It will record the fragment and the error that was produced in two separate files within this folder. This is the final product.

Happy Fuzzing!