I have a newer staticcheck and golangci-lint on my laptop, and it started
complaining about something. The first comment added disables the check
in staticcheck-as-a-command, the second disables it when it's being done
by golangci-lint, which invokes the analysis passes directly and displays
the output differently, and also doesn't recognize the hints used by
staticcheck.
Newer golangci-lint doesn't find anything else that it wants to complain
about.
In rare cases, RBF can produce containers which have a recorded N value which
is incorrect. This rarely affects anything, but on some particular queries,
this can result in very strange outcomes, like array containers with more
than 1<<16 entries.
To fix this, we have toContainer specify that it doesn't know the correct
N for the bitmap containers it's creating, which costs extra time for counting,
and should be considered a temporary workaround.
Also, we add a CheckN() function which is controlled by the
roaringparanoia flag, and add a number of calls to it, for instance, as
deferred calls after every container operation when roaringparanoia is
enabled. This means that we get improved confidence that we've caught
the relevant errors, but is not suitable for production use.
Previously, RBF shared a list of WAL segments between the DB & Tx.
However, this increased the need for mutexes to access the data.
WAL segments are effectively immutable on-disk so the list of segments
has been refactored so that changes to the segment list are done via
copy-on-write which allows read transactions to access segment data
without a mutex.
The database checkpointing can remove early, unused segments and
there is an update/add check to make sure that Tx segments pushed back
to the DB do not include removed segments.
This commit fixes an issue where direct writes would overwrite the
source page where data was being copied from because writes are
immediate (instead of going to the WAL first).
- on startup in blue_green mode, we will migrate
blue to green if blue is empty.
- otherwise, when blue has data, we verify
against green before proceeding with the
blue_green run.
- small optimization in the rbf cursorx.go to
short-circuit processing on a nil bitmap.
This avoids a roaringparanoia tag panic.
- back out holdbkg.go, was too slow.
add a distinct Holder.imu lock instead.
Thaw() is supposed to always provide writable storage, which it does
by ensuring that containers aren't frozen, but also by cloning or
copying their data if the data is marked as being memory-mapped.
But only the roaring backend had the ability to mark data as memory-mapped,
because that wasn't exported. Fixed this, and added corresponding code
to badger, lmdb, and rbf.
- blue_green for doing migration. Called before Holder.Open finishes.
- holdbkg.go added for index lookup. Less wedging between a deadlock and a race.
- fix fault under read-only map under lmdb at
TestExecutor_Execute_Row_Range/RowIDColumnID by doing cow in roaring.
- roaring -tags gofuzz builds again
- roaringparanoia build tag added to make test targets in Makefile
- add rbf.NewDBWithAllocZero for out-of-bounds memory checks
- .circleci/config.yml test-shardwidth-22 with large run container, kept OOM-ing we suspect.
Fixes#819
blake3 code is used in several places on the code. The file was
duplicated on root and rbf package.
To avoid cyclic dependencies, I moved it to hash package. Some methods
must be public to use them in different places.
HashOfDir method was removed. Not used.
Signed-off-by: Antonio Navarro Perez <antnavper@gmail.com>
This commit adds the ability to start a transaction with an exclusive
lock for the entire database. This ensures no other read or write
transactions can run at the same time. Writes in this mode write
directly to the database and skip the WAL entirely.
- introduce Query Context (Qcx) for managing database-per-shard.
- replaces the MultiTx, so mtx.go is retired and removed.
- introduces the HolderConfig struct and all Holders now have
a path from birth.
- rbf speedups on bitwise writes
- badgerdb is removed due to unresolvable write conflicts.
fixes#703#676
The testhook/ package provides an easy way to set up multiple
hooks to run before/after tests are run.
The audit hooks track open and closes of storage backends,
files, indexes, and holders, for example. A tempdir wrapper
creates temporary directories which are automatically cleaned up
when the test ends. Any kind of resource creation that
should be closed at test conclusion can be tracked. We
will complain at the end of the TestMain if resources are
leaking.
Leaks under go1.13:
We use a wrapper function which is a no-op for go 1.13, but actually
calls testing.TB.Cleanup in go1.14, so we can still build with 1.13 even though
tests will leak files all over the place there. Because of this,
don't run the testhook tests when using 1.13, as they'll always fail.
- the test/pilosa.go http client now times out after 10 seconds
to help diagnose hung server situations.
- Makefile targets added to get better progress reports.
- lmdb as a backend (lmdb.go)
(lmdb is the fastest known transactional storage backend)
- per Tx call statics report enabled with PILOSA_CALLSTAT=true (stattx.go)
- framework for per-shard db (dbshard.go)
- txfactory handles any pair under blue-green testing (txfactory.go)
- enable CGO in Dockerfiles for lmdb
Previously, the `rbf.DB.opened` flag was set after `checkpoint()`
when reopening, however, this flag is checked by `checkpoint()` so
it was not properly executing.
- rbf had races around the new rootRecords cache in tx
- rbf tx needed a write lock on the db now that rootRecords are written
- added a global registry for rbfDB to correctly dedup instances
- implement DeleteFragment, DeleteIndex for rbf
- use badger style keys for rbf to allow content checksumming to be list
containers in the same order
- lots of other integration of rbf into pilosa layer.
Previously, the `checkpoint()` function determined the segments to drop
based on the current active transactions' WAL ID references. However, if
no transactions are active then the checkpoint would drop segments too
aggressively.
This changes the determination by using the highest WAL ID that is
actually checkpointed to disk to determine the high water mark. If no
page are checkpointed then no segments can be dropped.
green:
TestFragment_RowsIteration/combinations
TestFragment_RoaringImportTopN
red: (needs Ben's attention)
PILOSA_TXSRC=rbf go test -v -run TestFragment_TopN_IDs -tags=' shardwidth20' "-gcflags=all=-d=checkptr=0"
also red: (one for Ben)
TestCursor_FirstNext_Quick/9 is throwing
panic: cannot find segment containing WAL page: 1
as we check the error back from checkpoint() in Rollback().
a) All tests green under -race for both PILOSA_TXSRC=roaring and PILOSA_TXSRC=badger.
b) Distinct is merged back into mainline pilosa.
Seebs notes on the Distinct work:
merge Distinct plugin back into main source tree, convert to Tx
We drop all references to the Preemptively Deprecated Don't You Dare
Use This extension interface, and move the one and only extension we had
(Distinct) into the main executor.
Also this fixes an arguable bug, which is that Container.AsBitmap()
would panic on a nil parameter, but it should have returned an empty
bitmap, because a nil *Ccontainer is a valid empty container. This
simplifies logic significantly in Distinct.
Fixes#569#570#571#572#573#584#585
