mirror of
https://github.com/fabro-sh/fabro.git
synced 2026-09-08 22:21:45 +00:00
Fabro
parent
236554483c
commit
e6f99cad8c
4 changed files with 57 additions and 27 deletions
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@ -1,21 +1,24 @@
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{
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"timestamp": "2026-03-16T12:01:41.355870Z",
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"current_node": "solve",
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"timestamp": "2026-03-16T12:01:43.727004Z",
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"current_node": "extract_patch",
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"completed_nodes": [
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"start",
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"setup",
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"solve"
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"solve",
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"extract_patch"
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],
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"node_retries": {
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"setup": 1,
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"solve": 1,
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"setup": 1,
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"extract_patch": 1,
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"start": 1
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},
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"context_values": {
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"failure_class": "",
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"thread.solve.current_node": "extract_patch",
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"internal.node_visit_count": 1,
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"current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n\n## Context\n- failure_class: deterministic\n- failure_signature: setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.\n",
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"command.output": "fatal: destination path '.' already exists and is not an empty directory.\n",
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"current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n- **solve**: success\n - Model: claude-opus-4-6, 22.0k tokens in / 5.5k out\n - Files: /tmp/astropy/astropy/io/ascii/rst.py\n",
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"command.output": "",
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"thread.setup.current_node": "solve",
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"response.solve": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:\n - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`\n - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`\n\n2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:\n - Before: `lines = [lines[1]] + lines + [lines[1]]`\n - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`\n\nThe hardcoded `lines[1]` only worked when there was exactly 1 header row (the \"name\" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `[\"name\", \"unit\"]`), the separator line moves to a later index — specifically `len(header_rows)`.",
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"last_stage": "solve",
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@ -23,19 +26,45 @@
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"internal.retry_count.solve": 1,
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"internal.retry_count.setup": 1,
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"internal.fidelity": "compact",
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"internal.retry_count.extract_patch": 1,
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"graph.rankdir": "LR",
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"thread.start.current_node": "setup",
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"last_response": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows",
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"command.stderr": "",
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"internal.run_id": "01KKV857HVVYX8Z5MRDPYTFTA4",
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"internal.thread_id": "setup",
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"internal.thread_id": "solve",
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"failure_signature": "",
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"graph.goal": "Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n",
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"current_node": "solve",
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"current_node": "extract_patch",
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"outcome": "success"
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},
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"logs": [],
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"node_outcomes": {
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"setup": {
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"status": "fail",
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"context_updates": {
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"command.stderr": "",
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"command.output": "fatal: destination path '.' already exists and is not an empty directory.\n"
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},
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"failure": {
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"message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n",
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"failure_class": "deterministic"
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},
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"duration_ms": 137
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},
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"start": {
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"status": "success",
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"duration_ms": 0
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},
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"extract_patch": {
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"status": "success",
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"context_updates": {
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"command.output": "",
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"command.stderr": ""
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},
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"notes": "Script completed: git diff",
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"duration_ms": 57
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},
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"solve": {
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"status": "success",
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"context_updates": {
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@ -57,31 +86,16 @@
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"/tmp/astropy/astropy/io/ascii/rst.py"
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],
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"duration_ms": 210600
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},
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"start": {
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"status": "success",
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"duration_ms": 0
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},
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"setup": {
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"status": "fail",
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"context_updates": {
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"command.stderr": "",
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"command.output": "fatal: destination path '.' already exists and is not an empty directory.\n"
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},
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"failure": {
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"message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n",
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"failure_class": "deterministic"
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},
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"duration_ms": 137
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}
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},
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"next_node_id": "extract_patch",
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"next_node_id": "exit",
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"loop_failure_signatures": {
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"setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1
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},
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"node_visits": {
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"solve": 1,
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"setup": 1,
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"extract_patch": 1,
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"start": 1,
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"setup": 1
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"solve": 1
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}
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}
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5
nodes/extract_patch/script_invocation.json
Normal file
5
nodes/extract_patch/script_invocation.json
Normal file
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{
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"command": "git diff",
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"language": "shell",
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"timeout_ms": null
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}
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5
nodes/extract_patch/script_timing.json
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5
nodes/extract_patch/script_timing.json
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{
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"duration_ms": 53,
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"exit_code": 0,
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"timed_out": false
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}
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6
nodes/extract_patch/status.json
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6
nodes/extract_patch/status.json
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{
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"status": "success",
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"notes": "Script completed: git diff",
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"failure_reason": null,
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"timestamp": "2026-03-16T12:01:43.724806+00:00"
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}
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