mirror of
https://github.com/fabro-sh/fabro.git
synced 2026-09-08 22:21:45 +00:00
Fabro
parent
914dfc1454
commit
236554483c
5 changed files with 129 additions and 10 deletions
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@ -1,34 +1,63 @@
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{
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"timestamp": "2026-03-16T11:58:07.955752Z",
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"current_node": "setup",
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"timestamp": "2026-03-16T12:01:41.355870Z",
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"current_node": "solve",
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"completed_nodes": [
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"start",
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"setup"
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"setup",
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"solve"
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],
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"node_retries": {
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"setup": 1,
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"solve": 1,
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"start": 1
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},
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"context_values": {
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"failure_class": "deterministic",
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"failure_class": "",
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"internal.node_visit_count": 1,
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"current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n",
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"current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n\n## Context\n- failure_class: deterministic\n- failure_signature: setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.\n",
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"command.output": "fatal: destination path '.' already exists and is not an empty directory.\n",
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"thread.setup.current_node": "solve",
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"response.solve": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:\n - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`\n - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`\n\n2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:\n - Before: `lines = [lines[1]] + lines + [lines[1]]`\n - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`\n\nThe hardcoded `lines[1]` only worked when there was exactly 1 header row (the \"name\" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `[\"name\", \"unit\"]`), the separator line moves to a later index — specifically `len(header_rows)`.",
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"last_stage": "solve",
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"internal.retry_count.start": 1,
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"internal.retry_count.solve": 1,
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"internal.retry_count.setup": 1,
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"internal.fidelity": "compact",
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"graph.rankdir": "LR",
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"thread.start.current_node": "setup",
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"last_response": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows",
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"command.stderr": "",
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"internal.run_id": "01KKV857HVVYX8Z5MRDPYTFTA4",
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"internal.thread_id": "start",
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"failure_signature": "setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.",
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"internal.thread_id": "setup",
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"failure_signature": "",
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"graph.goal": "Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n",
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"current_node": "setup",
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"outcome": "fail"
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"current_node": "solve",
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"outcome": "success"
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},
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"logs": [],
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"node_outcomes": {
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"solve": {
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"status": "success",
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"context_updates": {
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"last_response": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows",
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"last_stage": "solve",
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"response.solve": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:\n - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`\n - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`\n\n2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:\n - Before: `lines = [lines[1]] + lines + [lines[1]]`\n - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`\n\nThe hardcoded `lines[1]` only worked when there was exactly 1 header row (the \"name\" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `[\"name\", \"unit\"]`), the separator line moves to a later index — specifically `len(header_rows)`."
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},
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"notes": "Stage completed: solve",
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"usage": {
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"model": "claude-opus-4-6",
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"input_tokens": 21987,
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"output_tokens": 5461,
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"cache_read_tokens": 412593,
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"cache_write_tokens": 26248,
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"reasoning_tokens": 698,
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"cost": 0.73938
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},
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"files_touched": [
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"/tmp/astropy/astropy/io/ascii/rst.py"
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],
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"duration_ms": 210600
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},
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"start": {
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"status": "success",
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"duration_ms": 0
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@ -46,11 +75,12 @@
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"duration_ms": 137
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}
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},
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"next_node_id": "solve",
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"next_node_id": "extract_patch",
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"loop_failure_signatures": {
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"setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1
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},
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"node_visits": {
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"solve": 1,
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"start": 1,
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"setup": 1
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}
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63
nodes/solve/prompt.md
Normal file
63
nodes/solve/prompt.md
Normal file
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@ -0,0 +1,63 @@
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Goal: Please support header rows in RestructuredText output
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### Description
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It would be great if the following would work:
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```Python
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>>> from astropy.table import QTable
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>>> import astropy.units as u
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>>> import sys
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>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})
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>>> tbl.write(sys.stdout, format="ascii.rst")
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===== ========
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wave response
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===== ========
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350.0 0.7
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950.0 1.2
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===== ========
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>>> tbl.write(sys.stdout, format="ascii.fixed_width", header_rows=["name", "unit"])
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| wave | response |
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| nm | ct |
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| 350.0 | 0.7 |
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| 950.0 | 1.2 |
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>>> tbl.write(sys.stdout, format="ascii.rst", header_rows=["name", "unit"])
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Traceback (most recent call last):
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File "<stdin>", line 1, in <module>
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File "/usr/lib/python3/dist-packages/astropy/table/connect.py", line 129, in __call__
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self.registry.write(instance, *args, **kwargs)
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File "/usr/lib/python3/dist-packages/astropy/io/registry/core.py", line 369, in write
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return writer(data, *args, **kwargs)
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File "/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py", line 26, in io_write
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return write(table, filename, **kwargs)
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File "/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py", line 856, in write
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writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)
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File "/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py", line 800, in get_writer
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writer = core._get_writer(Writer, fast_writer, **kwargs)
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File "/usr/lib/python3/dist-packages/astropy/io/ascii/core.py", line 1719, in _get_writer
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writer = Writer(**writer_kwargs)
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TypeError: RST.__init__() got an unexpected keyword argument 'header_rows'
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```
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### Additional context
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RestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`
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## Completed stages
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- **setup**: fail
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- Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \["setuptools",/requires = \["setuptools==68.0.0",/' pyproject.toml && python -m pip install -e .[test] --verbose`
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- Stdout:
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```
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fatal: destination path '.' already exists and is not an empty directory.
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```
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- Stderr: (empty)
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## Context
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- failure_class: deterministic
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- failure_signature: setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.
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Fix this GitHub issue in the repository. Make the minimal code change needed.
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5
nodes/solve/provider_used.json
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5
nodes/solve/provider_used.json
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{
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"mode": "agent",
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"provider": "anthropic",
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"model": "claude-opus-4-6"
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}
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15
nodes/solve/response.md
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15
nodes/solve/response.md
Normal file
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@ -0,0 +1,15 @@
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The fix works perfectly. Here's a summary of the minimal change made:
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## Changes Made
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**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)
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1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:
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- Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`
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- After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`
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2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:
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- Before: `lines = [lines[1]] + lines + [lines[1]]`
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- After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`
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The hardcoded `lines[1]` only worked when there was exactly 1 header row (the "name" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `["name", "unit"]`), the separator line moves to a later index — specifically `len(header_rows)`.
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6
nodes/solve/status.json
Normal file
6
nodes/solve/status.json
Normal file
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{
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"status": "success",
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"notes": "Stage completed: solve",
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"failure_reason": null,
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"timestamp": "2026-03-16T12:01:41.354351+00:00"
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}
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Loading…
Add table
Reference in a new issue