diff --git a/checkpoint.json b/checkpoint.json index 5f357f8f5..afce0fa5f 100644 --- a/checkpoint.json +++ b/checkpoint.json @@ -1,34 +1,63 @@ { - "timestamp": "2026-03-16T11:58:07.955752Z", - "current_node": "setup", + "timestamp": "2026-03-16T12:01:41.355870Z", + "current_node": "solve", "completed_nodes": [ "start", - "setup" + "setup", + "solve" ], "node_retries": { "setup": 1, + "solve": 1, "start": 1 }, "context_values": { - "failure_class": "deterministic", + "failure_class": "", "internal.node_visit_count": 1, - "current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n", + "current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n\n## Context\n- failure_class: deterministic\n- failure_signature: setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.\n", "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n", + "thread.setup.current_node": "solve", + "response.solve": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:\n - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`\n - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`\n\n2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:\n - Before: `lines = [lines[1]] + lines + [lines[1]]`\n - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`\n\nThe hardcoded `lines[1]` only worked when there was exactly 1 header row (the \"name\" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `[\"name\", \"unit\"]`), the separator line moves to a later index — specifically `len(header_rows)`.", + "last_stage": "solve", "internal.retry_count.start": 1, + "internal.retry_count.solve": 1, "internal.retry_count.setup": 1, "internal.fidelity": "compact", "graph.rankdir": "LR", "thread.start.current_node": "setup", + "last_response": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows", "command.stderr": "", "internal.run_id": "01KKV857HVVYX8Z5MRDPYTFTA4", - "internal.thread_id": "start", - "failure_signature": "setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.", + "internal.thread_id": "setup", + "failure_signature": "", "graph.goal": "Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n", - "current_node": "setup", - "outcome": "fail" + "current_node": "solve", + "outcome": "success" }, "logs": [], "node_outcomes": { + "solve": { + "status": "success", + "context_updates": { + "last_response": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows", + "last_stage": "solve", + "response.solve": "The fix works perfectly. Here's a summary of the minimal change made:\n\n## Changes Made\n\n**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class)\n\n1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`:\n - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)`\n - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)`\n\n2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`:\n - Before: `lines = [lines[1]] + lines + [lines[1]]`\n - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]`\n\nThe hardcoded `lines[1]` only worked when there was exactly 1 header row (the \"name\" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `[\"name\", \"unit\"]`), the separator line moves to a later index — specifically `len(header_rows)`." + }, + "notes": "Stage completed: solve", + "usage": { + "model": "claude-opus-4-6", + "input_tokens": 21987, + "output_tokens": 5461, + "cache_read_tokens": 412593, + "cache_write_tokens": 26248, + "reasoning_tokens": 698, + "cost": 0.73938 + }, + "files_touched": [ + "/tmp/astropy/astropy/io/ascii/rst.py" + ], + "duration_ms": 210600 + }, "start": { "status": "success", "duration_ms": 0 @@ -46,11 +75,12 @@ "duration_ms": 137 } }, - "next_node_id": "solve", + "next_node_id": "extract_patch", "loop_failure_signatures": { "setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1 }, "node_visits": { + "solve": 1, "start": 1, "setup": 1 } diff --git a/nodes/solve/prompt.md b/nodes/solve/prompt.md new file mode 100644 index 000000000..3461ac6ea --- /dev/null +++ b/nodes/solve/prompt.md @@ -0,0 +1,63 @@ +Goal: Please support header rows in RestructuredText output +### Description + +It would be great if the following would work: + +```Python +>>> from astropy.table import QTable +>>> import astropy.units as u +>>> import sys +>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count}) +>>> tbl.write(sys.stdout, format="ascii.rst") +===== ======== + wave response +===== ======== +350.0 0.7 +950.0 1.2 +===== ======== +>>> tbl.write(sys.stdout, format="ascii.fixed_width", header_rows=["name", "unit"]) +| wave | response | +| nm | ct | +| 350.0 | 0.7 | +| 950.0 | 1.2 | +>>> tbl.write(sys.stdout, format="ascii.rst", header_rows=["name", "unit"]) +Traceback (most recent call last): + File "", line 1, in + File "/usr/lib/python3/dist-packages/astropy/table/connect.py", line 129, in __call__ + self.registry.write(instance, *args, **kwargs) + File "/usr/lib/python3/dist-packages/astropy/io/registry/core.py", line 369, in write + return writer(data, *args, **kwargs) + File "/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py", line 26, in io_write + return write(table, filename, **kwargs) + File "/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py", line 856, in write + writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs) + File "/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py", line 800, in get_writer + writer = core._get_writer(Writer, fast_writer, **kwargs) + File "/usr/lib/python3/dist-packages/astropy/io/ascii/core.py", line 1719, in _get_writer + writer = Writer(**writer_kwargs) +TypeError: RST.__init__() got an unexpected keyword argument 'header_rows' +``` + + +### Additional context + +RestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)` + + + + +## Completed stages +- **setup**: fail + - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \["setuptools",/requires = \["setuptools==68.0.0",/' pyproject.toml && python -m pip install -e .[test] --verbose` + - Stdout: + ``` + fatal: destination path '.' already exists and is not an empty directory. + ``` + - Stderr: (empty) + +## Context +- failure_class: deterministic +- failure_signature: setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory. + + +Fix this GitHub issue in the repository. Make the minimal code change needed. \ No newline at end of file diff --git a/nodes/solve/provider_used.json b/nodes/solve/provider_used.json new file mode 100644 index 000000000..c1905ff10 --- /dev/null +++ b/nodes/solve/provider_used.json @@ -0,0 +1,5 @@ +{ + "mode": "agent", + "provider": "anthropic", + "model": "claude-opus-4-6" +} \ No newline at end of file diff --git a/nodes/solve/response.md b/nodes/solve/response.md new file mode 100644 index 000000000..144beee8a --- /dev/null +++ b/nodes/solve/response.md @@ -0,0 +1,15 @@ +The fix works perfectly. Here's a summary of the minimal change made: + +## Changes Made + +**File: `astropy/io/ascii/rst.py`** (2 changes in the `RST` class) + +1. **`__init__` method**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`: + - Before: `def __init__(self):` → `super().__init__(delimiter_pad=None, bookend=False)` + - After: `def __init__(self, header_rows=None):` → `super().__init__(delimiter_pad=None, bookend=False, header_rows=header_rows)` + +2. **`write` method**: Made the position line index dynamic instead of hardcoded to `1`: + - Before: `lines = [lines[1]] + lines + [lines[1]]` + - After: `idx = len(self.header.header_rows)` then `lines = [lines[idx]] + lines + [lines[idx]]` + +The hardcoded `lines[1]` only worked when there was exactly 1 header row (the "name" row), because the position/separator line (`=====`) was always at index 1. With multiple header rows (e.g., `["name", "unit"]`), the separator line moves to a later index — specifically `len(header_rows)`. \ No newline at end of file diff --git a/nodes/solve/status.json b/nodes/solve/status.json new file mode 100644 index 000000000..b113aa35f --- /dev/null +++ b/nodes/solve/status.json @@ -0,0 +1,6 @@ +{ + "status": "success", + "notes": "Stage completed: solve", + "failure_reason": null, + "timestamp": "2026-03-16T12:01:41.354351+00:00" +} \ No newline at end of file