GitNexus/CONTRIBUTING.md
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fix(ci): align tree-sitter readiness + grammar-update workflows on a shared manifest (#858) (#2187)
* chore(ci): add shared vendored-grammars manifest; monitor reads it

.github/vendored-grammars.json is the single source of truth for the vendored
tree-sitter grammars (c/swift/kotlin/dart/proto): name, upstream coords, and
policy holds. update-vendored-grammars.mjs now builds its GRAMMARS map from the
manifest (behavior-preserving — same exported shape). Adds manifest-agreement
tests so the loader can't silently skew from the file.

* fix(ci): classify vendored grammars from manifest, drop bare "?" (#858)

The readiness report decided "is this vendored?" via is_vendored_pin (a file:
package.json spec) — but the 5 vendored grammars aren't in package.json, so they
were misrouted through the npm path and rendered bare "?" for ABI (read from an
empty node_modules), plus a spurious "? (fetch failed)" for github-only proto.

Now vendored grammars are classified by membership in the shared manifest and
their ABI is read from gitnexus/vendor/<name>/src/parser.c (always in a
checkout). github-only vendored grammars skip the npm peer-dep fetch; the
tree-sitter-c hold is surfaced from the manifest (held, not plain "Ready"); and
every remaining unintrospectable value renders a labeled token, never a bare
"?". --assert-current now covers the vendored grammars too instead of skipping
them. Adds a stdlib unittest suite incl. a manifest⇄vendor-dir consistency
guard.

* docs(ci): document the shared vendored-grammars manifest

Both tree-sitter workflow headers now point at .github/vendored-grammars.json as
the shared source of truth; the readiness workflow gains a PR-path trigger on the
manifest + test, and runs the readiness unit tests on validation events.
CONTRIBUTING.md documents the manifest contract under CI automation contracts.

* fix(review): apply autofix feedback

- Guard manifest reads in both scripts with a clear error (was an opaque
  module-import traceback that crashed the script and test collection).
- Never render a bare "?": relabel the npm-path ABI/version/peer sentinels and
  the vendored upstream-ABI miss to labeled tokens; the report is now ?-free
  regardless of node_modules/network, and the test is hermetic.
- Add a VENDORED_NAMES ⊆ GRAMMARS guard + manifest-missing error test.
- Drop now-dead is_vendored_pin/is_vendored/_(vendored)_.
- Compose held + out-of-range vendored blocker reasons instead of overwriting.
- Reword the shared-manifest docs to not over-claim shared upstream coords.

* fix(ci): apply root prettier formatting to mjs + ts test

The quality/format gate runs root `prettier --check .` (printWidth 100, the
gitnexus-local config differs and falsely passed locally).

* test(ci): make both tree-sitter scripts testable offline

The scripts hit live npm/GitHub, which makes the report run flaky and the
monitor's detect/apply logic untestable. Add hermetic seams:

- readiness: --offline flag (+ GITNEXUS_TS_READINESS_OFFLINE env) no-ops the npm
  registry + upstream fetches; the report renders deterministically (vendored
  ABIs from the repo, npm columns marked 'offline', no bare '?'). 3 tests assert
  an offline run touches ZERO network (urlopen patched to raise).
- monitor: detect() and apply() accept injected deps (vendoredVersion/
  resolveUpstream/fetchSource/readAbi) so the newer/ABI/hold gating runs offline
  with fixtures; apply gains --dry-run (validates but writes nothing). 6 tests
  cover newer/same-version/held-c/ABI-15/applicable + a no-mutation dry-run.

* fix(review): keep --assert-current hermetic + harden the no-bare-? invariant

Tri-review findings (PR #2187):
- P2 REGRESSION: --assert-current (documented 'hermetic and offline', run in CI
  without --offline) routed the 5 vendored grammars through vendored_drift_summary,
  which fetches upstream parser.c + commit sha — 10 discarded network calls per run.
  Fix: read the vendored ABI locally via a new vendored_abi_from_repo() helper (also
  used by vendored_drift_summary). Now verifiably network-free.
- Unify the upstream-ABI miss sentinel: prose said 'n/a (generated at build)' while
  the matrix said 'n/a' — and 'generated at build' is a wrong cause (swift HAS a
  committed parser.c). Both now render neutral 'n/a'.
- Fix the stale assert_current docstring claiming swift is prebuilt-only/no parser.c.
- Guard the last latent bare-? path (vendor package.json missing 'version').

Tests: AssertCurrent (network-free guard + out-of-range via the new injection
point), malformed-JSON manifest, detect() error-path, explicit npm/github
undefined assertions. 17 Python + 15 vitest, all hermetic.

* fix(review): use a single unittest import style (CodeQL 753)

CodeQL py/import-and-import-from flagged `import unittest` + `from unittest
import mock`. Collapse to `from unittest import TestCase, main, mock`.

* fix(review): explicit raise in _matrix_row (CodeQL 754)

CodeQL py/mixed-returns flagged the implicit fall-through after self.fail()
(which it doesn't model as NoReturn). End with an explicit raise AssertionError.

* test(review): replace non-null assertions with a must() guard

@typescript-eslint/no-non-null-assertion flagged 4 `!` operators. Add a
narrowing must<T>(value, message) helper (throws on undefined) and a named
baseResolveUpstream, removing every non-null assertion.

* fix(review): unguessable heredoc delimiter for the report output

The report embeds the manifest `hold` field (fork-PR-editable); a fixed
DRIFT_EOF delimiter in a hold value could close the $GITHUB_OUTPUT heredoc
early and inject output keys. Use DRIFT_EOF_$(openssl rand -hex 16) — a value
the report cannot contain. (Randomized delimiter over base64: keeps REPORT raw
markdown, no consumer-side decode.)

* fix(review): scope issues:write to scheduled runs (two-job split)

GitHub Actions has no step-level permissions, so the only way to keep PR runs
(incl. forks) from receiving `issues: write` is to split the job. A `report`
job (contents:read, all events) renders the report + the PR `:⚠️:` and
exposes report/exit_code as job outputs; a schedule-only `upsert-issue` job
(needs: report, issues:write, no checkout) consumes them for the issue upsert +
close. The 'Check upgrade readiness' check name is preserved.

* fix(review): launder npm-version '?' in disposition prose

The disposition bucket prose interpolated r['npm_version'] raw, so a successful
200 npm /latest response lacking a 'version' key would render a bare '?' (the
matrix cell already laundered it). Add npm_version_label ('unknown' for '?') and
use it in all five bucket renderers. Test a version-less npm response.

* refactor(review): load_vendored_manifest returns only the consumed 'hold'

The readiness script reads only the grammar names + 'hold'; the 'key' and
'upstream' fields were phantom data (upstream-drift coords live in the script's
own GRAMMARS map). Narrow the return to {hold}.

* fix(review): unify detect()/apply() 'newer' check for github grammars

detect() compared the bare sha7 while apply() compared up.version (the full
<base>-g<sha7> provenance string apply() also writes). After the bot re-vendored
a github grammar once, detect() reported a perpetual false 'update available'
while apply() correctly saw 'already current' — a noisy job summary + wasted
--apply subprocess (the PR-exists guard absorbed it before any duplicate PR).
Extract a shared isNewer(up, have) helper used by both. Tests cover equal-
provenance (false), first-vendoring plain-version (true, not suppressed), and
sha-advanced (true). Coupled with U12 (the detect⇄apply agreement assertion
lives there once apply()'s not-newer path returns instead of process.exit).

* test(review): cover main()'s out-of-range + prebuilt-only vendored ABI branches

main()'s vendored-ABI classification reads through vendored_abi_from_repo (the
local-read seam --assert-current uses), so patching it drives the
'Vendored (ABI out of range)' blocker branch and the prebuilt-only (vendored_abi
None → 'prebuilt' cell, not '?') branch — neither reachable today since all 5
vendor dirs ship parser.c at ABI 14.

* test(review): monitor-side manifest⇄vendor-dir consistency guard

Mirror the Python consistency guard on the monitor side — the monitor consumes
the same manifest and is the side that WRITES files from manifest `name`, so
manifest/vendor-dir drift must fail CI here too.

* fix(review): validate grammar names at manifest load (path-traversal guard)

The manifest `name` is joined into gitnexus/vendor/<name> paths in both scripts
(and apply() WRITES there), so reject any name not matching tree-sitter-[a-z0-9-]+
at the single load chokepoint — defense-in-depth even though the live trust
boundary already prevents exploitation. loadManifestGrammars gains an injectable
`raw` arg + export for testing; tests reject a '../etc' name in both scripts.

* refactor(review): apply() throws ApplyExit; CLI maps to exit codes

apply()'s 4 process.exit calls killed the vitest worker, blocking in-process
tests of its error branches. Replace them with a thrown ApplyExit{code}; the
not-newer (already-current) path returns `have` instead of exit(0). The isMain
CLI block try/catches and maps ApplyExit.code → process.exit, so the monitor's
subprocess contract (exit 0/2/3) is byte-identical (verified via subprocess
smoke). Tests cover unknown-key=2, held=3, ABI-reject=3, and not-newer (returns
current, no throw, no write).

* refactor(review): extract vendored render helper; trim docstrings (<1000 lines)

Extract the 'Vendored parsers' prose render into _render_vendored_section() so
main() coordinates named phases rather than inlining a ~450-line monolith, and
condense the most verbose docstrings/comments. The script drops from 1092 to 999
lines (under the 1000 bar the maintainability review flagged). Behavior-preserving:
the deterministic --offline render is byte-identical before/after (verified
in-place), --assert-current still passes, and the full unit suite is green.

* fix(review): row-diff regex captures only the Status cell

The change-detection regex captured the whole row tail as group 2, so any
non-status cell drift (e.g. an upstream-ABI bump) emitted a false-positive
'change' line. Capture only the Status cell ([^|]+? before the final |$).
The workflow parseRows regex and the Python _ROW_DIFF_RE stay byte-identical;
the stability test now asserts group 2 is the status string (e.g. c →
'Vendored — held') and contains no pipe.

* fix(ci): hoist intro string out of the list literal (CodeQL 755)

The U13 extraction moved the 'Vendored parsers' intro paragraph (implicitly
concatenated string literals) INTO a list literal, tripping CodeQL
py/implicit-string-concatenation-in-list (reads as a possibly-missing comma
between elements). Hoist it into a parenthesized `intro` variable. Render is
byte-identical.
2026-06-13 16:15:49 +01:00

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Contributing to GitNexus

How to propose changes, run checks locally, and open pull requests.

License

This project uses the PolyForm Noncommercial License 1.0.0. By contributing, you agree your contributions are licensed under the same terms unless stated otherwise.

Where to discuss

  • Issues & feature ideas: use GitHub Issues for the upstream repo, or your forks tracker if you work from a fork.
  • Community: see the Discord link in the root README.md.

Development setup

Prerequisites: Node.js — gitnexus/ requires >=22.0.0 and gitnexus-web/ requires ^20.19.0 || >=22.12.0 (enforced via the engines field in each package). Use nvm install to match the local version.

  1. Clone the repository.
  2. CLI / MCP package: cd gitnexus && npm install && npm run build
  3. Web UI (if needed): cd gitnexus-web && npm install
  4. Run tests as described in TESTING.md.

Containerized development (optional)

If you prefer an isolated environment with Claude Code, OpenAI Codex CLI, and Cursor CLI pre-installed, open the repo in VS Code with the Dev Containers extension and run Dev Containers: Reopen in Container. See .devcontainer/README.md for first-time auth flows and Windows WSL2 setup.

Branch and pull requests

  • Use short-lived branches off the default branch of the repo you are targeting.
  • PR titles MUST follow the conventional-commit formatpr-labeler.yml enforces this on every PR and auto-applies the matching label so release notes group the change correctly.
  • PR description: what changed, why, how to verify (commands), and any risk or rollback notes.

Pull request titles

Format: <type>[(scope)][!]: <subject>

Allowed types and the release-notes section each one lands in (defined in .github/release.yml):

Type Label applied Release-notes section
feat enhancement 🚀 Features
fix bug 🐛 Bug Fixes
perf performance 🏎️ Performance
refactor refactor 🔄 Refactoring
test test 🧪 Tests
ci ci 👷 CI/CD
build / deps dependencies 📦 Dependencies
docs documentation (grouped under Other Changes unless a Docs section is added)
chore / revert chore (excluded from release notes)

Append ! to the type (e.g. feat(api)!: drop /v1 endpoint) or include BREAKING CHANGE: in the PR body to flag a breaking change — the labeler then adds the breaking label and the 💥 Breaking Changes section is rendered first.

Examples:

feat(web): add smart chat scroll
fix(extractors): resolve silent contract mis-resolution
perf: avoid O(n²) traversal in heritage walker
chore(deps): bump vitest to 3.0.0
ci: standardize workflow concurrency

Commits within a PR may use any style — only the merged PR title shows up in release notes, so that's the one the convention applies to.

Before you open a PR

  • Tests pass for the packages you touched (gitnexus and/or gitnexus-web).
  • Typecheck passes: npx tsc --noEmit in gitnexus/ and npx tsc -b --noEmit in gitnexus-web/.
  • No secrets, tokens, or machine-specific paths committed.
  • Documentation updated if behavior or public CLI/MCP contract changes.
  • Pre-commit hook runs clean (.husky/pre-commit — formatting via lint-staged + typecheck for staged packages; tests run in CI only).

Code review

Maintainers may request changes for correctness, tests, performance, or consistency with existing patterns. Keeping diffs focused makes review faster.

GitHub Actions — Concurrency Convention

Every workflow under .github/workflows/ MUST declare a top-level concurrency: block using this convention:

  • Group key starts with ${{ github.workflow }} so no two workflows can collide on the same group name. The discriminator that follows is chosen per event shape:

    • Branch/tag scope: ${{ github.workflow }}-${{ github.ref }}
    • Per-PR scope (for issue_comment, pull_request_review*, pull_request meta events): ${{ github.workflow }}-${{ github.event.pull_request.number || github.event.issue.number }}
    • workflow_run scope (e.g. ci-report.yml): ${{ github.workflow }}-${{ github.event.workflow_run.pull_requests[0].number || format('{0}/{1}', github.event.workflow_run.head_repository.full_name, github.event.workflow_run.head_branch) }} — the fork fallback must be stable across reruns (never workflow_run.id, which is per-run-unique and defeats serialization).
    • Global single-slot (manual dispatch utilities): ${{ github.workflow }}
    • Reusable workflows invoked via workflow_call: do NOT use ${{ github.workflow }} in the group key — in called-workflow context its evaluation is ambiguous and can resolve to the caller's name, which would deadlock against the caller's own group. Use a hardcoded literal prefix and a github.event_name-aware expression that falls through to github.run_id for reusable invocations (see ci.yml for the canonical form). Approved literal prefixes: CI- (ci.yml) and docker-build-push- (docker.yml). The check-workflow-concurrency.py validation script must be updated whenever a new approved literal prefix is added.
    • Merge queue (merge_group): when this event is added, use ${{ github.workflow }}-${{ github.event.merge_group.head_ref }} with cancel-in-progress: false (every queue entry is a distinct ref; never cancel).
  • cancel-in-progress policy:

    Event cancel-in-progress Why
    pull_request CI run true New push supersedes old run
    push to main false Every main commit gets validated
    Tag push (v* publish) false Never cancel mid-publish
    push to main for release-candidate false Never cancel mid-RC publish
    workflow_dispatch (release/publish) false Manual runs are intentional
    workflow_run (sticky-comment reports) false Serialize, don't race
    Per-PR bot workflows (@claude, review) false Serialize comments per PR
    PR-meta re-checks (pr-description-check) true Cheap, latest wins
    Single-slot utilities (triage sweep) true Latest dispatch supersedes
  • For workflows that serve multiple events at once (e.g. ci.yml handles pull_request, push, and workflow_call), make cancel-in-progress event-aware:

    concurrency:
      group: ${{ github.workflow }}-${{ github.ref }}
      cancel-in-progress: ${{ github.event_name == 'pull_request' }}
    
  • When adding a new workflow, copy the concurrency block from an existing workflow of the same event shape.

CI automation contracts

Two workflows produce machine-readable signals on every PR. Coding agents and humans alike can rely on the names and shapes below — change them with intent.

gitnexus/autofix

pr-autofix.yml (untrusted) + pr-autofix-publish.yml (trusted) run prettier --write and eslint --fix against the PR head and surface a single ChatOps button on the PR. Three signals are emitted:

Surface Where Notes
Sticky PR comment Top-level comment with the HTML marker <!-- gitnexus:pr-autofix-summary --> and heading ## :sparkles: PR Autofix. Only posted when there is something to fix; clean PRs stay silent. Edit-in-place via marker; one comment per PR.
Fenced JSON block Inside the sticky, fenced as gitnexus-autofix. Schema gitnexus.pr-autofix/v2 with fields state (fixes-available), pr_number, head_sha, changed_lines, run_id, and apply_command (literal /autofix). Parseable signal — preferred over regexing prose. v1 fields preserved as a superset.
Check Run Stable name gitnexus/autofix on the PR head SHA. Conclusion: success (clean) or neutral (fixes-available). The neutral title is Autofix available — comment /autofix to apply. Surfaced under PR Checks; readable via gh pr checks <pr>.

To detect outcome from an agent: gh pr checks <pr> --json name,conclusion,output | jq '.[] | select(.name == "gitnexus/autofix")'.

Forks are supported. The untrusted half runs fork code with permissions: {} and ships the diff as an artifact; the trusted publish job consumes only the diff (data, not code) and posts the comment + check run.

Applying autofix

Comment /autofix on the PR (whole-line, no arguments). The pr-autofix-apply.yml workflow:

  1. Validates the comment body matches ^/autofix\s*$ exactly. Quoted or inline mentions are silently ignored.
  2. Validates the commenter has admin, write, or maintain permission on the repo, OR is the PR author. Other commenters get a 👎 reaction and a refusal reply.
  3. Locates the most recent successful pr-autofix.yml run for the PR's current head SHA, downloads its autofix artifact, applies the patch, and pushes a chore(autofix): ... commit back to the PR head branch.
  4. Reacts on success, 👎 on stale-patch / push-failure, and posts a short reply with the apply-run URL in either case.

The apply workflow runs from the default branch's copy of the file regardless of where the comment originates — that's the trust anchor. There is no diff-size cap (the apply workflow uses git apply + push, not the GitHub review-comment API).

For fork PRs, the push succeeds only when the contributor has Allow edits by maintainers enabled on the PR (the default). When they have disabled it, the workflow fails loud with a 👎 reaction and an explanation comment.

Re-invoking /autofix after a successful apply is a safe no-op — the workflow detects the already-applied state via git apply --check --reverse and reacts without pushing.

Sensitive paths. The apply workflow refuses any patch that touches .github/ (workflow files, CODEOWNERS, dependabot config). A malicious PR could ship a custom prettier or ESLint config that reformats workflow YAML; if accepted, those edits would be pushed under contents: write without human review. Apply formatter changes to files under .github/ manually in a normal commit so they get the same review every other workflow change gets.

Vendored tree-sitter grammars

.github/vendored-grammars.json is the single source of truth for the vendored tree-sitter grammar set and each grammar's policy hold (the ones shipped from gitnexus/vendor/<name> rather than installed from npm). It lists each grammar's name, upstream coords (npm or github), and any hold. The monitor resolves upstreams from it; the readiness report keeps its own upstream-drift coords and reads vendored ABIs from gitnexus/vendor/. Two workflows read it:

  • grammar-update-monitor.yml (.github/scripts/update-vendored-grammars.mjs) — weekly; opens auto-PRs re-vendoring ABI-compatible upstream updates.
  • tree-sitter-upgrade-readiness.yml (.github/scripts/check-tree-sitter-upgrade-readiness.py) — daily; renders the tree-sitter-0.25 readiness report (issue #858), reading each vendored grammar's ABI from gitnexus/vendor/<name>/src/parser.c.

Sharing the manifest keeps the two aligned: a consistency-guard test asserts the manifest set equals the gitnexus/vendor/tree-sitter-* directories. When you vendor a new grammar (or remove one), update .github/vendored-grammars.json in the same change — otherwise that guard fails CI and the readiness report regresses to ? placeholders.

AI-assisted contributions

If you use coding agents, follow project context files (e.g. AGENTS.md, CLAUDE.md) and avoid drive-by refactors unrelated to the issue. Prefer incremental, test-backed changes.

Releases

One workflow ships gitnexus to npm — .github/workflows/publish.yml. It routes between two modes based on the triggering event:

  • Stable mode — triggered by pushing any v<X.Y.Z> tag (no -rc.* suffix; RC tags are excluded at trigger via a negative glob). Publishes to the latest dist-tag with a changelog-backed GitHub release. Maintainers are expected to tag from main as a convention; the workflow itself does not enforce branch reachability. No Docker build (RC-only). Before cutting a stable release, keep gitnexus/package.json, gitnexus-claude-plugin/.claude-plugin/plugin.json, .claude-plugin/marketplace.json, and the matching CHANGELOG.md entry in lockstep — the always-on gitnexus unit suite now fails if those manifest versions drift.

  • Release-candidate mode — runs on every push to main (typically a merged PR) plus manual workflow_dispatch. Docs-only changes are skipped via paths-ignore. Publishes to the rc dist-tag with version X.Y.Z-rc.N and a GitHub prerelease, where:

    • X.Y.Z is selected automatically. On push (and on dispatch with bump: auto, the default) the workflow continues the active rc cycle: if the registry already has X.Y.Z-rc.* versions with X.Y.Z > current latest, it reuses the highest such base; otherwise it patch-bumps from latest. Dispatching with bump: patch|minor|major resets the cycle from latest.
    • N is auto-incremented against existing X.Y.Z-rc.* entries on the registry. First rc for a given base is rc.1.
    • After the npm publish succeeds, the workflow calls docker.yml as a reusable workflow to build and push the corresponding RC Docker images (e.g. ghcr.io/abhigyanpatwari/gitnexus:1.7.0-rc.1, mirrored to docker.io/akonlabs/gitnexus:1.7.0-rc.1). The images are signed with Cosign; the OIDC identity is docker.yml@refs/heads/main (the caller's ref — see README.md § Docker for the verify command).

    Idempotency: the workflow pushes an rc/<HEAD_SHA> marker tag and a v<RC> release tag atomically, before calling npm publish. The RC guard refuses to re-run once the marker exists, so a post-publish failure will not mint a duplicate rc for the same commit. The v<RC> tag points at a detached release commit whose package.json matches the npm tarball exactly (traceable releases). The RC tag is excluded from this workflow's push: tags: filter, so it does not re-trigger publishing — preventing the double-publish failure mode tracked in #1609. Recovery after a partial failure: the workflow's if: failure() cleanup step in the publish job auto-deletes the v-tag and marker on most post-publish failures, so the typical retry is just:

    gh workflow run publish.yml --ref main -f force=true
    # or push a new commit to main, which will cut a fresh RC
    

    If auto-cleanup didn't run (e.g. the cleanup step itself failed, or the failure happened in the route/rc-guard phase before the marker was pushed), manual cleanup is:

    git push --delete origin rc/<HEAD_SHA> v<RC>
    # then redispatch with force: true
    

    Release-PR-skip subject pattern. The rc-guard job recognizes a squash-merged release commit by matching the commit subject against ^chore: release vX.Y.Z (optionally followed by (#NNNN) for the squash-merge PR-number suffix). Match is case-insensitive — Chore: Release v1.2.3 works too. PRs that should suppress the RC build must either use this subject shape, or carry the release label so the label-based fallback fires. Other release-style subjects (chore(release): v1.2.3, release: v1.2.3) will NOT trigger the skip — please name the release PR exactly chore: release vX.Y.Z to keep the dedup deterministic.

    Docker-only partial failure: if publish succeeds (npm tarball + tags are live) but the docker job subsequently fails (e.g. GHCR flakiness), the npm RC is already published and the rc/<HEAD_SHA> marker is in place. Recovery without cutting a new RC:

    # Re-run only the failed docker job from the original workflow run:
    gh run rerun <run-id> --failed
    

    Find the run ID via gh run list --workflow=publish.yml --branch main. docker.yml intentionally has no workflow_dispatch trigger (images are tag-driven by design), so the gh-run-rerun path is the supported recovery.

    GitHub Release transient failure (npm publish succeeded, Release step failed): the npm artifact is live but no GitHub Release page exists. Recover by either re-running the failed job (gh run rerun <run-id> --failed), or creating the Release manually:

    gh release create v<RC> --prerelease --generate-notes        # RC
    gh release create v<X.Y.Z> --notes-file gitnexus/CHANGELOG.md # stable
    

The rc workflow never moves latest. To verify after a change, inspect dist-tags:

npm view gitnexus dist-tags