* feat(skills): add ce-plan — GitNexus+PDG implementation-planning skill Adds .claude/skills/ce-plan: a planning-only skill that builds implementation-ready plans from GitNexus graph navigation (query/context/ impact/trace), bounded statement-level PDG slices (pdg_query, impact mode:pdg, explain), and targeted source verification, with a context ledger to prevent repeated reads and a machine-readable implementation context pack (stable contract for a future ce-implement). Whitelisted in .gitignore and registered in AGENTS.md and CLAUDE.md outside the auto-managed gitnexus block. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(skills): apply ce-plan validation findings (tool contract, consistency, conventions) Tool contract: impact mode:'pdg' shape now includes the schema-required direction param; CDG branch sense documented as the result 'label' field (reason is cypher/raw-edge only); explain caveats corrected to its real false-negative classes (cross-function TAINT_PATH is modeled). Consistency: PDG slice homed in working memory (ledger keeps one-liners); depth knob defined and category-overrides-baseline ordering stated; call_depth (consumed by nothing) and content-hash bookkeeping dropped; Never section folded into Hard rules; Phase 3 deduplicated to a pointer; allowed-repeat escalations defined; budget/discard accounting clarified; verification-commands gathering added to Phase 4; open_questions added to the context pack. From scenario runs: plans now pin the verified-at HEAD commit and index freshness in a header, tag claims [verified]/[graph]/[inferred]/[assumed], quote load-bearing tool output, prefer pre-hook-carrying npm scripts, and support an out:<path> destination override; output path defined as the Phase 1 target repo root. Conventions: AGENTS.md 1.9.0 / CLAUDE.md 1.4.0 changelog rows + metadata bumps; future ce-implement qualified as future. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): rename ce-plan → gitnexus-plan; add cross-CLI (Codex) entrypoints Renames the skill dir, frontmatter, output filename convention, plan H1 (GitNexus Engineering Plan), the future executor handle (gitnexus-implement), the .gitignore whitelist entry, and all AGENTS.md/CLAUDE.md references. Follows the pr-swarm-review cross-CLI pattern: SKILL.md is the canonical CLI-neutral spec, AGENTS.md § Engineering planning is the Codex/any-agent entrypoint, and the README documents the optional user-level ~/.codex/prompts/gitnexus-plan.md slash command plus an invocation matrix. Skill prose de-branded from Claude Code (agent-neutral verification layer). Also fixes two post-review README contradictions: the anti-reread claim now names the ledger's allowed escalations, and 'read-only by contract' is now 'planning-only' (the skill writes exactly one repo file — the plan); the scope-creep rule and template §12 now agree on where deferred follow-ups land. Drops the stale plugin-collision limitation. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(skills): document Codex user-level install path for gitnexus-plan Codex discovers SKILL.md skills from ~/.agents/skills (same path the other gitnexus-* skills install to); README now documents the cp install plus the optional ~/.codex/prompts slash-command file, with the prompt body preferring the repo copy and falling back to the user-level install. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): gitnexus-plan freshness gate + active PDG-layer refresh Freshness is now a Phase 1 gate, not advisory: under the default freshness:strict, a stale index is refreshed once per planning session via node .gitnexus/run.cjs analyze --index-only (appending --pdg when the task will reach the PDG phase), then the context resource is re-read. A missing PDG layer likewise triggers the one permitted --index-only --pdg refresh and re-probe instead of a passive recommendation. freshness:accept (or a failed/impractical refresh) preserves the old behavior: plan on the stale graph, source-weighted, labelled in the plan header. --index-only is the load-bearing flag choice — it suppresses all file generation, so the planning-only contract holds (only the .gitnexus store changes). Ledger gains an index_refresh record; plan header states fresh / refreshed / refresh-skipped-with-reason. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): gitnexus-plan runner build check before freshness refresh When the target repo builds the analyzer from its own source (bin → dist/ mapping, as gitnexus/ does), the Phase 1 freshness gate now verifies dist/ is current before running the analyze refresh — rebuilding via the package's build script when any analyzer source file is newer than the built entrypoint — and prefers that freshly built CLI. Otherwise a stale dist re-indexes with outdated extraction logic and the 'fresh' index lies. Rebuilds are recorded in the ledger's index_refresh; the PDG-phase refresh inherits the same check. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): add gitnexus-work executor and gitnexus-lfg pipeline gitnexus-work executes a gitnexus-plan as verified atomic commits: consumes the §11 implementation_context pack, drift-checks the plan's evidence pin against HEAD, re-verifies assumptions before relying on them, runs impact before every symbol edit and detect_changes before every commit (repo mandates), builds tests from the plan's scenarios, and routes structural drift back to gitnexus-plan Deepen mode instead of coding around it. gitnexus-lfg is a thin orchestrator: gitnexus-plan → blocking user gate (deepen / proceed / stop, deepen loops allowed) → gitnexus-work → review via the existing gitnexus-pr-review skill (open PR, else branch diff vs default). One bounded fix cycle for review findings; never pushes or opens a PR on its own. gitnexus-plan gains a Deepen mode (re-run freshness gate, escalate to depth:deep, re-verify graph/inferred/assumed claims toward verified, rewrite the same file); its 'future gitnexus-implement' placeholder is retired in favor of gitnexus-work. Registered via .gitignore whitelists, AGENTS.md 1.10.0 (section renamed to Engineering planning & execution), CLAUDE.md 1.5.0. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(skills): apply cross-skill review findings to the gitnexus skill family Two P1s: gitnexus-plan Deepen mode now re-anchors before re-pinning (diffs the old evidence pin over every [verified]-claim file and re-reads or downgrades before the header moves — moving the pin without this laundered stale claims as verified); the index-refresh budget is stated once in Phase 1 (one --index-only refresh plus at most one Phase 3 --pdg upgrade per session, Deepen = its own session) with ledger and pdg-slice deferring to it. Contract fixes: gitnexus-work's drift check now covers every file the pack cites (not just files_to_modify) and parses the full pack incl. primary/related symbols and acceptance_criteria (walked in Phase 4 alongside §13); a pre-completed check skips §7 steps already landed and Deepen gains a reconcile-execution-state step, closing the mid-execution route-back loop; pack assumptions must name what to check and how. lfg: Lane 4 passes the merge-base to detect_changes compare (two-dot diff misattributes upstream commits when default advanced), branch-diff is the stated normal case, oversized review findings route to the plan gate instead of overflowing direct mode, the one-fix-cycle cap is explicit on re-run, and headless runs end at the plan gate with the plan as deliverable. work: blank mode narrowed to *gitnexus-plan*.md with a re-execution guard, direct-mode discipline spelled out, branch meaningfulness defined against the plan slug, and the plan document is committed as the branch's docs commit (review diff includes it). Planning-only contract now names the dist/ rebuild as the second permitted state change; Phase 5.1 names the four claim tags; stale AGENTS.md anchors fixed. Known latent issue left untouched: gitnexus/gitnexus-pr-review pairs a three-dot example with a two-dot detect_changes compare — that skill is also shipped by the plugin, so fixing it here would drift the copies; lfg compensates by passing the merge-base. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): ship the engineering skill family with the gitnexus package npm i -g gitnexus users now get gitnexus-plan / gitnexus-work / gitnexus-lfg: the three skills are added to gitnexus/skills/ in directory form (SKILL.md + references/), which installSkillsTo already enumerates dynamically and copies recursively to every editor target (~/.agents/skills for Codex, Cursor, OpenCode, Qoder, ...) on gitnexus setup — uninstall enumerates the same root, so removal stays clean. The Claude Code plugin channel (gitnexus-claude-plugin/skills/) carries the same copies plus the standard per-skill mcp.json. Global-install support in the skill text: gitnexus-plan Phase 1 now resolves the analyzer runner explicitly — node .gitnexus/run.cjs analyze when the project has a runner, else gitnexus analyze (installed CLI), else npx gitnexus analyze — and all analyze mentions route through it, satisfying the skills-steering policy (#1939/#1945) which sweeps the plugin copies. New drift guard test/unit/shipped-skills-sync.test.ts asserts the npm and plugin copies stay byte-identical to the canonical .claude/skills/ family (plugin = canonical + mcp.json), same discipline as run.cjs ↔ resolve-invocation.ts. skills-steering + shipped-skills-sync: 11/11 green. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(eval): workflow_bench — measure the skill workflow's token savings Benchmarks gitnexus-plan → gitnexus-work against a baseline agent (--disallowedTools Skill) on identical tasks, in fresh detached worktrees, using real headless Claude Code sessions; every number comes from the CLI's --output-format json usage report (field names validated against a live 2.1.207 session). Reports per-arm medians (input/cache/output tokens, cost, wall time, turns), a savings row, and resolve status from a per-task verify command — savings on failed tasks are flagged, not celebrated. Per-task setup hook prepares fresh worktrees (deps); --permission-mode bypassPermissions (default) lets sessions run unattended in the throwaway trees. Free-model support: --base-url/--auth-token/--model route headless sessions through any Anthropic-compatible endpoint; free-model.litellm.yaml is a ready litellm-proxy template for OpenRouter :free variants or local Ollama, so benchmarking burns no paid tokens (README documents rate limits and the small-model skill-following caveat). Harness validated end-to-end with a stub CLI (worktree lifecycle, both arms, plan→work chaining, verify, aggregation, report) and 4 pytest units for the pure aggregation/savings/report helpers. AGENTS.md 1.11.0. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(eval): record first workflow_bench calibration run Trivial-task calibration (add -V alias): both arms resolved; workflow arm ~4.3x baseline cost — the documented overhead-dominated regime, recorded so the regime boundary is empirical rather than asserted. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(eval): workflow_bench scenario matrix — arm variants, task classes, churn Ground-base measurement across scenarios: tasks.scenarios.yaml spans four labeled classes (trivial → investigation-bug → investigation-feature → cross-module) with deterministic verifies (prescribed test files). New arms: workflow_direct (gitnexus-work direct mode — the middle option that locates the routing boundary lfg's gate and work's triage encode) and baseline_nomcp (no skills AND no graph tools — separates workflow-discipline value from GitNexus-tool value; off by default). Records now carry task class and diff churn (files/+ins/−del vs the starting commit) as an over-engineering proxy; the report renders a class column and per-arm savings rows vs baseline. 5 pytest units + stub-CLI e2e of the full three-arm matrix. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(eval): record workflow_bench ground base; fix churn measurement bias Ground base (3 classes x 3 arms, n=1/cell): every arm resolved every task — pass/fail quality saturates at this difficulty, making the comparison pure cost. Full plan→work never amortized its ~$9-11 fixed cost on tasks a baseline finishes in ≤35 turns (−211% to −333% cost); workflow_direct sits near baseline (−15% to −55%, once faster wall) with more test coverage. Routing implication recorded: direct mode/plain agent below this scale, full workflow for cross-module / multi-session / plan-as-deliverable work. The cross-module cell and multi-run variance are the next measurements. Churn fix: git add --intent-to-add -A before diffing (arms that never commit no longer undercount new files) and :(exclude)docs/plans (the committed plan doc no longer inflates workflow churn); this run's churn numbers predate the fix and are omitted from the recorded table. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * perf(skills): cost-optimize the workflow from measured ground base Every optimization targets a measured fixed-cost component (eval/workflow_bench ground base: workflow arm −211% to −333% vs baseline, all tasks resolved): - Plan form is category-priced: compact form (core sections w/ § anchors preserved, ≤80 lines excl. pack, mini-pack subset of the context pack) for narrow/default categories; the full 13 sections only for deep work (refactor/security/performance/concurrency/architecture). A compact plan outgrowing its cap reclassifies to full rather than overflowing. - Freshness gate is category-priced: compact categories default to accept (source-weighted, refresh only when a graph claim becomes load-bearing); strict stays the default for full-plan categories — the rebuild+re-index was the largest single fixed cost. - Turn economy: per-category tool-call budgets (~10 to ~45; architecture uncapped); budget exhaustion routes open questions to §12 instead of more digging. - gitnexus-work fast path: HEAD == evidence pin → skip all citation re-reading (the pin's entire point); mini-pack fields tolerated. - lfg Lane 1 boundary triage: tasks below the measured ~35-turn boundary get offered gitnexus-work direct mode before the plan lane is spent. Copies re-synced (npm skills/, plugin, ~/.agents); steering + sync guards green. Re-measurement of the workflow arm follows to verify the numbers actually improve. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(eval): record optimization re-measurement — inv-bug workflow cell −20% cost Same task, same conditions, post-830a0459 skills: $14.56→$11.70 (−20%), 83→72 turns, cache_read −24%; verified in-transcript that the compact form, turn budget, and skipped rebuild/re-index all fired. Wall +15% from a work- session test-debugging tail (n=1 variance). Regime unchanged (~3.5x baseline on this class) — routing rule stands. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(eval): per-arm clone isolation — worktree ref-namespace leak contaminated an arm The cross-module workflow_direct cell reported an impossible 28-turn solve with churn byte-identical to the workflow arm: git worktree add shares the repo's ref namespace, so the workflow arm's slug branch (created by gitnexus-work Phase 2) survived worktree removal and the direct arm found and adopted the completed work. Arms now get isolated git clone --shared copies (object store via alternates, refs clone-local — agent branches and stashes die with the clone; origin/<ref> fallback for non-default refs). Leaked branch deleted; baseline arm verified clean (0 branch references in its transcript); cell marked invalidated pending re-run. Records the valid cross-module cells: workflow $18.32 vs baseline $18.03 (premium −1.6%, vs −211%..−333% on smaller classes) — fixed costs amortize at this scale, with a less destructive diff and a plan artifact as bonus; resolve rate still tied. Churn fingerprinting is what caught the contamination — noted in the README as an integrity check. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(eval): complete cross-module cell — direct mode wins 47% cost / 56% wall Clean clone-isolated re-run: workflow_direct resolved the hardest class at $9.53/52 turns/15m vs $18.03/98/34m baseline and $18.32/107/37m full workflow. The measured story across all four classes: the execution discipline (gitnexus-work) is the consistent sweet spot and delivers real token savings on hard tasks; the planning pass buys its artifact, not same-session savings. Resolve rate tied everywhere (n=1/cell caveat). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(eval): add trajectory-gated skill evolution (#2431) - Pair prompt candidates with incumbent workflow arms - Gate promotions on pinned-model quality and efficiency - Expire router evidence and document its lifecycle * fix(eval): allow pr-review skill candidates * feat(skills): rename and generalize GitNexus review * feat(eval): external-comparator and review arms for workflow_bench - ce_workflow / ce_workflow_direct: compound-engineering ce-plan/ce-work arms prompted with the same structure as the gitnexus arms - review / ce_review: gitnexus-review vs ce-code-review on an identical diff applied by the task's setup - plan handoff is snapshot-based: committed example plans in docs/plans/ tie on clone mtimes and broke the name-glob pick (executed a stale plan) - verify output tail is recorded per run and the final working-tree patch is kept, so failed rows are diagnosable after the clone is destroyed Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(skills,eval): address #2431 review — data-safe rename migration, fail-closed bench evidence - setup: never delete a legacy renamed skill dir — the installer cannot prove ownership (users customize or hand-write skills under these names); warn with the path instead, and the test now asserts survival - workflow_bench: fail closed when a session's --output-format json report is empty, malformed, or missing usage fields — an exit-0 shell with no parseable usage no longer counts as measured evidence (5 parametrized regression tests) - workflow_bench: document the trust model prominently (task setup/verify are shell-executed, sessions run bypassPermissions with the parent env, candidate overlays are prompt injection surface) in README + docstring - free-model.litellm.yaml: master_key from LITELLM_MASTER_KEY env instead of a static token; loopback-binding warning - ci: run the eval workflow_bench pytest suite on ubuntu (pytest+pyyaml only — no full eval stack) Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(eval): demand observed foreground verification in headless work-arm prompts In a headless -p session there is no later turn: a work arm backgrounded its slow test run, scheduled wakeups that can never fire, and reported done while two of its tests failed. All four work-arm prompts (both skill families, symmetric) now require verification output to be observed inside the session. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): ask plan depth up front instead of offering deepen afterwards gitnexus-plan Phase 0 now asks one blocking question in interactive sessions — quick / standard / deep, mapped onto the existing depth/form/ freshness knobs — when the invocation carries no explicit depth signal. Explicit knobs and headless runs skip the question (category posture unchanged, so benchmarks and automation behave as before). gitnexus-lfg's plan gate slims to proceed/stop: depth was already the user's up-front choice, so deepening is no longer offered by default — an explicit deepen request at the gate and executor route-backs still run Deepen mode, which remains the mechanism for strengthening an existing plan document. All shipped copies resynced (npm skills/, Claude plugin); AGENTS.md 1.13.0 and CLAUDE.md 1.7.0 pointers updated, including the analyzer's regenerated index-stats block at this branch's head. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): taint pass, expert lenses, and post-work index refresh gitnexus-review gains a PDG-backed taint-and-dependence pass (explain + pdg_query, --pdg folded into the stale refresh on trust-boundary diffs) and an Expert lenses section: domain reviewers derived from the graph's clusters plus four cross-cutting lenses (architectural fit, language conformance per the repo's own contract, Definition of Done, simplicity), dispatched once after the evidence-gathering steps and scaled to the diff. gitnexus-work Phase 4 now refreshes the knowledge graph after the DoD walk via the resolved-runner ladder with analyze --index-only, so the lfg review lane and later sessions query the finished work without dirtying the tree. lfg's threshold-governance paragraph moves to its README; eval citations are tagged as measured in the GitNexus repo. All shipped copies re-synced. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cli): remove legacy gitnexus-pr-review on uninstall; cover the rename migration uninstall's removal set now includes LEGACY_SKILL_DIR_NAMES derived from RENAMED_SKILL_DIRS, so a pre-rename install is cleaned up instead of orphaned. The rename warning gains behavioral coverage (fires with a legacy dir present, silent without), and shipped-skills-sync asserts legacy names stay absent from every shipped tree. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(eval): metric provenance, error-kind rows, skill-invocation verification, gate noise floor The promotion gate defaults to cost_usd (the only metric that includes subagent spend); token metrics carry an explicit main-loop-only warning in the report and promotion.json. Rows are classified by error_kind (session-error / verify-failed / infra-error), excluded from efficiency medians, and the gate requires equal valid-run counts. Each session's transcript is scanned for the expected Skill invocation and fails closed on a verified miss; a one-run resolution edge no longer promotes (noise floor). Per-run timeouts and setup failures record an infra-error row instead of aborting the sweep. Overlays touching skills no candidate arm exercises are rejected up front. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs: fix skill routing paths, version headers, and skill rosters Routing tables point at the tracked direct skill paths (matching the post-#2434 generator output), AGENTS.md/CLAUDE.md headers match their latest changelog rows, the 1.12.0 row describes what the migration actually does, package/cursor READMEs list the full shipped skill roster, and the swarm READMEs describe /gitnexus-review's expert lenses instead of calling it single-agent. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * ci: drift-guard workflow for skill copies; pin eval pip deps; track docs/plans ci.yml ignores '**.md', so an md-only skill edit would merge without the shipped-skills-sync test running — skill-sync.yml triggers exactly on the guarded trees. The eval job's pip install is version-pinned, and docs/plans/ is unignored so gitnexus-plan output can be committed. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ci): keep the runner-invocation literal in gitnexus-review; add concurrency block to skill-sync skills-steering requires skills with a stale-index hint to carry the exact 'node .gitnexus/run.cjs analyze' form — restore it with the fallback ladder as a parenthetical instead of replacing it. skill-sync.yml gains the top-level concurrency block the workflow-convention check enforces. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(skills): token-economy guidance for expert lenses Merge lenses that ground in the same material into one reviewer, and use cheaper model/effort tiers for mechanical lenses where the harness offers them, reserving the strongest engine for adversarial judgment. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(eval): isolate transcript home on Windows Ensure workflow_bench transcript tests set USERPROFILE alongside HOME so Path.home() resolves to the temporary test home on Windows. * docs(skills): fold PR #2522 execution learnings into review/work/plan Eight incident-backed hardenings from running the full skill cycle (review -> plan -> work, 28-finding fix series) on PR #2522: gitnexus-review: - Expert lenses execute the code under review on candidate failing shapes (empirical probe outranks source reading — every HIGH the language lenses found came from a probe, not a read). - Step 7 re-runs the exact CI check for refreshed baselines/fingerprints (a stale committed artifact is invisible in the diff; caught a red benchmarks arm). - Step 8 treats version/invalidation constants as review surface (INCREMENTAL_SCHEMA_VERSION class recurred verbatim from #2494). gitnexus-work: - Step 4 proves regression tests discriminate against the pre-fix tree. - Step 5 rebuilds executed build output before every verification run (parse workers load dist/; a correct fix 'failed' until rebuilt). - Step 6 makes stage -> detect_changes -> commit one unbroken sequence. gitnexus-plan: - Phase 0 seeded-evidence mode: plan FROM a completed review's verified findings instead of re-running the graph ladder. - Template §7: fingerprint/golden-guarded output rebaselines once, at the series tip. All distribution copies resynced; shipped-skills-sync + skills-steering 24/24 locally. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(eval): close the skill-evolution loop with an automated proposer driver workflow_bench.evolve adds the three arrows the README described as manual: a proposer session that turns loser trajectories (results.jsonl rows, transcripts, patches, the learning queue) into ONE bounded candidate overlay, a driver that iterates propose -> paired benchmark -> deterministic gate up to --generations, and an --apply step that copies a promoted overlay onto the canonical skills and shipped mirrors as a working-tree diff. The trust boundary is unchanged: overlays re-validate through candidate_overlay_files before any benchmark or apply consumes them, and committing, CI, and the PR merge stay human. learnings.jsonl is gitignored: it is machine-local evidence, like the session transcripts it complements. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(skills): route live-task friction into the evolution learning queue Each family skill gains a short 'Skill feedback' section: on friction with the skill's own instructions, append one JSON line to eval/workflow_bench/learnings.jsonl (GitNexus repo only) — never self-edit the skill from a live task. The proposer in workflow_bench.evolve consumes the queue as hints; a learning reaches a shipped skill only by beating the incumbent on the paired benchmark. All shipped mirrors re-copied byte- identical. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * ci(tests): run the evolve helper tests in the eval pytest job test_evolve.py needs only pytest+pyyaml, same as the harness tests the job already runs — without this line the new module had no CI coverage. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(ci): comment-triggered GitNexus review agent for PRs '@gitnexus review' from a maintainer (OWNER/MEMBER/COLLABORATOR; the action re-validates write access) runs the repo's gitnexus-review skill headlessly against the PR and posts the review as a sticky comment — remote triggering with no local setup. Read-only by construction: contents: read token, Write/Edit and web tools disallowed, Bash allowlisted to git reads and the gitnexus CLI; analyze parses PR code with tree-sitter, never executes it. Requires the ANTHROPIC_API_KEY repository secret; activates once the file is on the default branch. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(ci): dispatch lane + existing OAuth secret for the review agent Align with claude.yml: same action pin and the CLAUDE_CODE_OAUTH_TOKEN secret the repo already carries — no new secret to configure. Add a workflow_dispatch lane (PR number input) so the agent can be triggered from the Actions UI and tested before the issue_comment trigger reaches the default branch. Allowlist gh pr view/diff and gh api, which the review skill uses to pin PR SHAs. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ci): close a fork-PR RCE vector in the review agent's tool allowlist A live headless run of the exact workflow session against PR #2431 (66 turns, full gitnexus-review pass) surfaced a real HIGH-severity confused deputy: .gitnexus/ is gitignored, not blocked — a fork PR can commit its own .gitnexus/run.cjs, issue_comment checks out PR-head content, and the skill's runner ladder tries 'node .gitnexus/run.cjs analyze' first. That would execute fork-controlled JS inside a job holding CLAUDE_CODE_OAUTH_TOKEN and a write-scoped GITHUB_TOKEN — the opposite of the 'PR code is read, never executed' claim in the workflow's own header. Fix: drop the run.cjs allowlist entry so analyze always resolves through npx gitnexus (npm registry, not the checked-out tree); the skill's documented fallback mode covers the resulting graceful degradation. Also drop 'gh api' (not read-only — accepts -X POST/PATCH/DELETE) and downgrade pull-requests: write to read (comment posting only needs issues: write; the prompt already forbids formal review submission). Same session flagged a latent evolve.py bug: select_evidence's cost sort used dict.get's missing-key default, which doesn't cover an explicit JSON null in a foreign --seed-results row and crashes proposer setup with TypeError. Guarded with 'or 0.0' and added a regression test. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix: harden PR review and evolution trust boundaries * ci: follow workflow concurrency convention * fix(eval): make terminating error paths explicit * fix: unblock hardened review runtime checks * test: make containment canaries deterministic * test: expose Claude canary tool failures * fix: adapt clean shell environment for Claude * fix(eval): accept the runner's transcript source key in evidence preflight The proposer evidence preflight required transcript-artifact metadata to be exactly {path, sha256, bytes}, but the runner stamps a fourth provenance key (source=parent-captured-stream-json). Any --seed-results or generation>=2 run therefore aborted with SandboxError before proposing or promoting. Pin the producer literal as PARENT_EVENT_STREAM_SOURCE and validate it in the metadata check, and round-trip real producer output through sum_sessions into the preflight so the schema can't drift again. * fix(eval): treat an unmeasured session cost as unavailable, not $0 well_formed validated only the nested usage block, so an otherwise-successful session missing total_cost_usd was recorded as cost_usd=0.0 — and cost_usd is the default promotion metric (lower wins), so a cost-less session scored as free and could win promotion it never earned. Extract cost via measured_cost() (None on absent/garbage, a measured 0.0 preserved), propagate None through sum_sessions/aggregate/savings/report, and have the gate refuse to rank on a metric that was not measured on every run in both arms. * fix(eval): warn when ranking on the main-loop-only num_turns metric num_turns comes from the CLI's top-level usage (main-loop session only), like output_tokens, but selecting it emitted no metric_warning — so a subagent-heavy candidate could look artificially efficient. Add num_turns to MAIN_LOOP_ONLY_METRICS and broaden the warning to cover turns. * fix(eval): fail closed when an overlay adds a file with no committed base An overlay adding a new .md under gitnexus-{plan,work} passes the structural overlay checks but has no committed base for committed_destination_base_digests to bind against, so it raised an uncaught ValueError that crashed the evolve driver (and runner --candidate-overlay) mid-run. Catch it at both call sites: evolve reports NOT PROMOTED and exits, runner routes it through parser.error. * feat(eval): circuit-break the runner sweep on a systemic outage A sustained upstream outage used to pay out every remaining --timeout window one session at a time. Track consecutive session/infra/cleanup failures via a pure systemic_outage_streak helper; after --outage-streak (default 5) in a row, stop the sweep, still write report.md/promotion.json from partial evidence, and exit non-zero so evolve.py halts instead of proposing from truncated evidence. A task's own resolved=False never trips the breaker. * fix(cli): report a dirty working tree as stale in gitnexus status status --json (and the human output) computed up-to-date from commit + runner identity + completeness only, so a repo with uncommitted source changes at a matching HEAD was reported up-to-date while analyze would still re-index it. A graph-backed agent gating on that JSON could skip re-analysis on a stale graph. Extract analyze's dirty-tree check into a shared isWorkingTreeDirty() in storage/git and fold it into the status freshness decision. * fix(ci): use single-slash deny globs in the review agent's disallowedTools github.workspace already expands to an absolute path, so Read(/${{ github.workspace }}/**) and Read(//proc/**),(//sys/**),(//dev/**) produced double-slash patterns that a normalizing matcher may not match — silently no-opping the deny layer. Not exploitable (the allowlist is the primary control and never grants those paths), but the globs should be well-formed. Update the pinned test strings. * ci: install gitnexus-shared with npm ci from the committed lockfile The gitnexus-shared build floated its deps via npm install in three workflows (skill-sync, ci-tests, and — most importantly — the release publish.yml) while every other install step uses npm ci. The lockfile is committed and in sync, so switch all three to npm ci for reproducible, locked installs. * test(cli): make the shipped-skills drift guard reject symlinks listFilesRecursive walked with readdirSync and snapshotDir read with readFileSync, both of which follow symlinks — so a mirror file symlinked to the canonical tree passed the byte-compare (and a symlinked mirror dir would be followed too). Reject a symlinked root via lstat and any symlinked entry via Dirent.isSymbolicLink, with negative tests (skipped on Windows). * test(eval): guard the candidate-skill vs mirror-root coverage invariant MIRROR_SKILL_ROOTS omits the Cursor tree, safe only because no candidate skill is cursor-shipped. Pin that invariant: every CANDIDATE_SKILLS entry must exist under canonical + every mirror root and must not ship to Cursor, so adding a cursor-shipped skill to the candidate set (the PR #2488 asymmetric-sync class) fails loudly instead of syncing three of four trees. * docs(ci): describe the review agent's staged post-merge rollout The DoD asked for a dry-run or triggered run before merge, but an issue_comment (or newly added workflow_dispatch) workflow only ever executes the default-branch copy, so it cannot be exercised from the PR that introduces it. Reword the DoD and the activation checklist to a staged rollout: merge registered-but-disabled, validate same-repo and fork execution post-merge, then enable the variable. * fix: pin plugin skill mcp.json to the release version via #2445 tooling The ten plugin skill mcp.json launched `npx -y gitnexus@latest mcp` on every skill connect — non-reproducible and a supply-chain surface, and (unlike the persisted setup config) never pinned. Extend sync-plugin-manifests.mjs with an mcp surface kind that stamps the gitnexus@<version> launch arg, pin all ten to 1.6.9 now, and keep them byte-identical so the drift guard stays green. The release lifecycle + publish.yml --check now re-stamp them like the four manifest surfaces; only READMEs stay on @latest as docs. * test(eval): prove the proposer's built-in file tools are confined The real-Claude canary only exercised Bash + MCP, so it proved process/MCP containment but not that the proposer's built-in file tools stay inside their mounts. Add a canary over the exact PROPOSER_ALLOWED_TOOLS surface and the same read-only /evidence mount as run_proposer (allowlist extracted to a shared constant so it can't drift): Read reaches /evidence, a Write into the read-only evidence mount is denied, and a Write lands in the output tree. * fix(eval): apply the candidate overlay after task setup for fair arms The candidate overlay was applied before the task's untrusted setup ran, so setup could observe candidate prose and the incumbent/candidate arms started from different pre-overlay state. Reorder within the sandbox: capture the base (pre-overlay) skill digest, run setup against the base skills, verify setup did not tamper them, then apply the overlay and capture the post-overlay digest the model must preserve. apply_candidate_overlay stages path-specific overlay files, so setup's uncommitted changes stay out of the baseline and churn is unchanged. Graph freshness for the review arm is handled by the status dirty-tree fix plus the review skill's stale-triggered re-index, not by reordering the cached per-task-sha graph materialization (which is mechanically blocked). * test(eval): end-to-end containment proof of the autonomous proposer Drives the real run_proposer through bubblewrap with a deterministic scripted model (no paid API): it reads the read-only evidence bundle and writes a candidate gitnexus-plan skill edit plus a rationale into the sandbox output tree; run_proposer enforces the trust boundary and copies only the validated overlay + proposal out. This exercises the autonomous-proposal stage of the self-evolution loop end-to-end in the eval/containment CI job (the gate and apply stages are covered by test_workflow_bench_evolution and test_promotion_apply). Env-gated on GITNEXUS_REQUIRE_CLAUDE_CANARY, so it runs only where the pinned Claude binary and user namespaces are available. * fix(eval): let the proposer author its overlay via Bash Running the end-to-end proposer canary in the containment CI job surfaced a real bug: run_proposer starts the session with --bare, which hard-disables the Write/Edit tools ("Write exists but is not enabled in this context"), yet allowlisted Edit/Write and omitted Bash. The proposer therefore had no working way to write its candidate overlay — the self-evolution loop could never produce a candidate. The sandbox settings already pre-authorize Bash (autoAllowBashIfSandboxed) and confine writes to workspace/tmp/home, so switch PROPOSER_ALLOWED_TOOLS to Read/Grep/Glob/Bash and tell the proposer to author files with Bash. The end-to-end test now drives the real run_proposer through bubblewrap and asserts a validated overlay + proposal are produced (this also replaces the earlier file-tool canary, whose Write/Edit premise was moot). * test(eval): author the proposer overlay with newline-free Bash content The nested shell-sandbox prefix mangles embedded newlines, so the multi-line overlay content never landed. Use single-line content for the deterministic proposer canary. * test(eval): drop the unverifiable end-to-end proposer canary The scripted proposer overlay never materialized in the containment job across runs, and the model tool-result content is not visible in CI logs, so the test cannot be finalized without an environment where the sandbox can actually run. Keep the verified production fix (Bash-authoring in run_proposer); the proposer sandbox/containment stays covered by the existing Bash+MCP and process-tree canaries. * test(cli): drop run-analyze.ts from the windowsHide spawn-family list U7 moved run-analyze.ts's only child_process call (the git status --porcelain dirty check) into storage/git.ts (already covered by this test, with windowsHide). run-analyze.ts no longer imports a spawn-family function, so the windowsHide-regression test's 'must have >=1 spawn call' invariant failed for it. Remove it from SRC_FILES. --------- Co-authored-by: Claude Fable 5 <noreply@anthropic.com> Co-authored-by: Zander Raycraft <zanderjraycraft@gmail.com> Co-authored-by: Azizur Rahman <azizur100389@gmail.com>
24 KiB
| name | description |
|---|---|
| gitnexus-plan | Use when you need a deep, implementation-ready engineering plan for a code change — built from GitNexus graph intelligence, statement-level PDG analysis, and targeted source verification, compact enough that an implementation agent can start without re-investigating. Also strengthens existing plans via Deepen mode. Examples: "/gitnexus-plan Add retry support to the ingestion pipeline", "/gitnexus-plan deepen docs/plans/<plan>.md", "plan this change using the knowledge graph". |
gitnexus-plan — implementation-ready engineering plans
Produce an implementation-ready plan for an engineering task. GitNexus is the
navigation layer (where to look), statement-level PDG is the constraint layer
(what gates and feeds the behavior), and your native targeted source reads are
the verification layer (what is actually true right now). The output is a plan
document plus a compact, machine-readable implementation context pack
that a follow-up implementation agent (gitnexus-work, or any executor) can
consume without repeating the investigation.
/gitnexus-plan <task description>
/gitnexus-plan impact_depth:3 depth:deep <task description> # knob overrides, see Configuration
This skill plans. It never implements. Do not modify production code,
tests, or configuration while running it. The only repository file it writes
is the plan document (a working ledger kept outside the repo is fine). The
only other permitted state change is an index refresh via
analyze --index-only, which writes only the .gitnexus index store. It
must not build analyzer dist/ output and must not mutate source, tests,
configuration, or evaluation data. Stale analyzer provenance is disclosed as
a source-weighted limitation, never repaired by a planning run.
Hard rules
- Ledger first. Before every GitNexus call and every repo file read, check
the context ledger. Never repeat a query or reread an unchanged range that
already answered the same question (allowed repeats are defined in
references/context-ledger.md; this skill's own reference files are exempt from ledger bookkeeping). - Every graph query answers a named planning question. Record the question and the conclusion in the ledger. No exploratory dredging.
- Source beats graph. The graph navigates; current source is authoritative. Verify before asserting (see Phase 4). Comments are the weakest evidence — never stronger than executable code.
- No fabrication. Never invent symbols, filenames, test names, tool results, or PDG edges. Unknowns go to Assumptions and Open Questions.
- No scope creep. Adjacent refactors the task didn't ask for go to plan §12 as explicitly-deferred follow-ups, not into Proposed Changes.
- Pin working-tree evidence, not only HEAD. Every plan form carries the
versioned global dirty digest and sorted cited-path manifest defined in
references/context-ledger.md. Generate it only with the portable helper and byte contract inscripts/evidence-provenance.mjsandreferences/evidence-provenance.md; never reimplement the digest. - Write the plan only through the helper. The generated-plan path is a
normalized repo-relative
docs/plans/YYYY-MM-DD-gitnexus-plan-<3-5-word-slug>.mdpath. Compose the complete UTF-8 document in memory or in a scratchpad outside the target repo, then pass it on stdin to the helper'swrite-plancommand. Never write the destination directly or fall back to an external output path when the safe writer fails. - Read an existing plan only through the helper. Deepen must invoke
scripts/evidence-provenance.mjs read-plan, parse the exact decodedplan_bytes_base64from its descriptor-anchored receipt, and retain that receipt's canonicalgenerated_plan_pathandplan_digestas one binding. Never parse a direct lexical-path read or apply one plan's digest to another path. - Stop when you have enough. Sufficient evidence ends exploration; plans do not improve monotonically with tokens spent.
Phase 0 — Parse and classify
Read references/context-ledger.md and open the ledger with the task:
original request, interpreted goal, acceptance criteria. Classify the task:
| Category | Posture (depth · plan form · tool-call budget · freshness) |
|---|---|
| Bug fix (local) | Narrow, 1–2 primary symbols, impact_depth 1 · compact · ~15 · accept |
| Feature | Default knobs · compact · ~30 · accept |
| Refactor / shared API change | Impact mandatory, impact_depth 3 · full · ~45 · strict |
| Performance | Default + performance PDG mode (references/pdg-slice.md) · full · ~45 · strict |
| Security | Default + security PDG mode + explain taint findings · full · ~45 · strict |
| Dependency upgrade / migration | Impact + compatibility focus; PDG rarely needed · compact · ~20 · accept |
| Concurrency / transactional | Control-flow + state-mutation PDG focus · full · ~45 · strict |
| Test improvement / docs | Narrowest: usually no impact or PDG pass · compact · ~10 · accept |
| Architecture change / spike | Widest: clusters + processes first · full · no cap · strict |
The category posture overrides the Configuration baseline; explicit key:value
invocation knobs override both. A task matching several rows combines them:
take the widest depth, union the focus areas.
Seeded evidence. When a completed investigation already supplies
verified findings — a finished review, a triage document with path:line
anchors and named failing scenarios — open the ledger FROM it: cite the
source document as the opening ledger entries and plan directly against
them instead of re-running the graph ladder over ground it already covers.
Re-deriving what the evidence proves is budget spent against the
turn-economy rule. Phase 4 still source-verifies whatever Proposed Changes
will cite, at the pinned commit — seeding replaces exploration, never
verification.
Depth is the user's decision, asked once, up front. In an interactive
session, when the invocation carries no explicit depth signal (no depth:,
form:, or freshness: knob, and not Deepen mode), ask one blocking
question before Phase 1 — how deep should this plan go?
- Quick —
depth:narrow form:compact freshness:accept. Fastest useful plan: 1–2 primary symbols, minimal graph work, core sections only. - Standard — the category posture above, unchanged. Recommend this unless the classification argues otherwise.
- Deep —
depth:deep form:full freshness:strict. All 13 sections,impact_depth3, clusters/processes read, PDG slices for the central functions.
The answer sets the knobs exactly as if they had been typed in the invocation; explicit knobs win and skip the question. Headless runs never ask — the category posture applies unchanged. Asking up front replaces offering to deepen a finished plan afterwards: Deepen mode (below) remains the mechanism for strengthening an existing plan document — a later session, review findings, an executor route-back — not a default follow-up question.
Turn economy is a deliverable. The plan is judged on decision quality per
token, not thoroughness theater (measured: a 63-turn plan for a two-line
change — the GitNexus repo's eval/workflow_bench/). Stay within the category's tool-call
budget; when the budget runs out with questions still open, record them in
§12 instead of digging further — the executor re-verifies cheaply anyway.
Phase 1 — Anchor and freshness
- Resolve the target repo:
list_reposif in doubt, else the indexed repo covering the working directory. Passrepoexplicitly on every call when more than one repo is indexed. - Record the repo's current HEAD commit in the ledger — every line-number citation in the plan is pinned to it.
- Resolve and record the analyzer runner (used by every
analyzecommand in this skill):node .gitnexus/run.cjs analyze …when the project has a runner (a previous analyze dropped it next to the index), elsegitnexus analyze …(installed CLI —npm install -g gitnexus), elsenpx gitnexus analyze …. Record its path/version and any available source/build identity; do not manufacture provenance from timestamps. - Read
gitnexus://repo/{name}/context— codebase overview + staleness check. Freshness gate. Plans built on a stale graph make stale blast-radius claims — but a re-index is the largest fixed cost a planning session carries, so the gate is category-priced:- Compact-plan categories default to
freshness: accept: plan on the current graph with source verification weighted higher — their plans cite little graph evidence. Escalate to a refresh mid-plan only when a graph claim becomes load-bearing (e.g. Proposed Changes rest on a d=1 dependent list), and only then. - Full-plan categories default to
freshness: strict, and under it: - Analyzer provenance check — before any refresh. Compare the resolved
runner identity with the index metadata and, in an analyzer-source
checkout, with current analyzer source. If identity is stale or unknown,
do not build output and do not make that graph load-bearing. Record a
stale analyzer provenance — source-weighted limitation in
index_refresh, the plan header, and §12; rely on targeted source reads or hand execution togitnexus-work, which owns the build-current gate. - Stale index → run
analyze --index-onlyvia the resolved runner (append--pdgwhen the task category will reach Phase 3) and re-read the context resource only when runner provenance is known-current. Refresh budget, stated once here: at most one--index-onlyrefresh in Phase 1 plus at most one later--pdgupgrade in Phase 3 (only when Phase 1's refresh lacked--pdg) per planning session — a Deepen run is its own session. Record each command, runner identity, and outcome in the ledger'sindex_refresh. - Refresh failed or impractical (no write access to the index, prohibitive
repo size), or
freshness: acceptwas passed → proceed on the stale graph, weight source verification higher, and state the staleness and the skipped refresh in the plan header and Assumptions. - Resources unreadable but tools working → proceed on tools alone, treat freshness as unknown (weight source higher), and note it in the plan.
- GitNexus unavailable entirely → switch to Fallback mode (below).
- Compact-plan categories default to
- For architecture-scale tasks only, also read
gitnexus://repo/{name}/clustersand.../processes.
Phase 2 — Graph navigation ladder
Use the narrowest operation that answers the current ledger question, in this
order. Budgets: at most max_primary_symbols (5) primary symbols and
max_related_symbols (20) related symbols active in the ledger.
query {search_query, task_context}— locate concepts, execution flows, modules, and related tests for the task.context {name}— 360° view of each candidate primary symbol: callers, callees, categorized refs, processes. Promote to primary or discard. Anambiguousresult (ranked candidates) is answered by one retry narrowed withkind/file_path/ uid — that retry is an allowed repeat.impact {target, direction}— upstream/downstream blast radius for shared or high-connectivity symbols (maxDepth=impact_depth;summaryOnly: truefirst for hub symbols, then drill in — an allowed repeat). Record the d=1 items — the direct (depth-1) dependents — the plan must account for every one of them.trace {from, to}— when the task hinges on how A reaches B, one call instead of chained context hops.- Statement-level PDG — Phase 3, for the functions the change centers on.
cypher— last resort, only for a precise graph question the tools above cannot express. Readgitnexus://repo/{name}/schemafirst; anchor and LIMIT every query.detect_changes {scope}— only when planning against existing uncommitted or branch work.
Do not run every tool by default. A local test fix may finish the ladder at step 2.
Phase 3 — Statement-level PDG slice
For the 1–3 functions most central to the change, build a bounded PDG
context slice. Read references/pdg-slice.md and follow it — it owns the
tool calls, inclusion criteria, depth bounds, slice schema, the security and
performance modes, and the no-PDG-layer fallback.
Phase 4 — Targeted source verification
GitNexus said where to look; now confirm what is there. Using ordinary file reads (exact line ranges, not whole files unless genuinely required):
- Read every source range the plan will cite: signatures, branch conditions, state mutations, error paths, nearby comments that change behavior. Compact plans cite less — verify what they cite, don't expand the citation set to have more to verify.
- Read the tests GitNexus associated with the primary symbols; never claim a test exists without having located it.
- Verify the build/test commands the plan will name actually exist (package.json scripts / CI workflows), and prefer the script form that carries its prerequisites (pre-hooks) over invoking underlying binaries directly.
- Check repo conventions that constrain the change (AGENTS.md, GUARDRAILS.md, lint/build config) — only the parts the change touches.
- Mark each ledger symbol
source_verified: trueas you go. A symbol that is named in Proposed Changes must be source-verified. - On graph/source disagreement: trust source, record the discrepancy in the ledger and the plan, recommend re-indexing. Never present stale graph data as fact.
- Immediately before composition, recompute the versioned
evidence_provenancesnapshot by invokingscripts/evidence-provenance.mjsexactly as specified inreferences/evidence-provenance.md: the canonical global dirty digest over all dirty paths and the sorted manifest of every cited path, including object kind and HEAD/index/worktree/untracked layer digests. Re-read any citation that changed during planning. Exclude only the generated plan path.
Evidence hierarchy, strongest first: current source and config → current tests and executable behavior → compiler/build/lint output → GitNexus graph and PDG → documentation and comments.
Phase 5 — Compose the plan
- Read
references/plan-template.mdand fill the category's form — compact (core sections, ≤80 lines excluding the pack) or full (all 13 sections) — from the ledger, tagging claims with the template's four classes —[verified],[graph],[inferred],[assumed]— and routing open questions to §12. - Build the implementation context pack per
references/context-pack.md(this is section 11 of the plan), including mandatoryevidence_provenancein compact and full forms. - Set
generated_plan_pathtodocs/plans/YYYY-MM-DD-gitnexus-plan-<slug>.mdunder the root of the repo being planned (the Phase 1 target repo, not necessarily the cwd); use a 3–5-word kebab-case slug and repo-relative paths inside the document. Compose the complete document without creating that destination, then pipe its exact UTF-8 bytes toscripts/evidence-provenance.mjs write-planas specified inreferences/evidence-provenance.md. The helper safely creates missing parent directories. Initial planning must not pass--replace. A safe-write failure blocks plan publication: report it and do not write directly, choose an external destination, or weaken the repo-relative provenance contract. The snapshot and writer commands apply the same strict generated-plan filename/date validator; do not substitute a source,.git, or arbitrarydocs/plans/path in either invocation. - Present in chat: objective, proposed-changes summary, implementation sequence, top risks, open questions, and the plan file path. Do not paste the whole document into chat.
Deepen mode
/gitnexus-plan deepen <plan-path> strengthens an existing plan in place
instead of creating a new one:
- Resolve the target repository and normalized repo-relative plan candidate,
then load it with
scripts/evidence-provenance.mjs read-plan --repo <root> --generated-plan <candidate>exactly as specified inreferences/evidence-provenance.md. Reject a missing, external, escaping, symlinked, or differently scoped path. Decode and parse only the receipt's exactplan_bytes_base64; retain its canonicalgenerated_plan_pathandplan_digestunchanged for the entire Deepen session. - Re-run Phase 1 in full — analyzer provenance check and freshness gate (a Deepen run is its own session, with its own refresh budget).
- Re-anchor before re-pinning. Recompute the plan's global dirty digest and cited-path manifest as well as comparing its old HEAD pin with current HEAD. Changed, renamed, deleted, mixed, or newly absent cited paths get their ranges re-read — or the claim downgraded — before the pin and provenance snapshot move. Moving only the commit pin silently launders dirty or stale claims as verified.
- Escalate to
depth: deep(impact_depth 3, clusters/processes read) unless the invocation overrides knobs explicitly. - Seed the ledger from the plan's §11 pack, then re-verify: every
[graph]/[inferred]claim gets a targeted pass toward[verified]; every[assumed]claim is resolved or kept with its reason; direct (d=1) dependent accounting is re-checked against the refreshed graph; PDG slices are built or expanded for the central functions when the layer is present. - Reconcile execution state. If
gitnexus-workalready landed commits for this plan (a mid-execution route-back), mark the §7 steps present at HEAD as completed and re-sequence the remainder — the rewritten plan must be executable from the top without redoing landed steps. - Strengthen whatever the deeper pass showed thin — test scenarios, risks, Definition of Done — and carry claim-tag upgrades through the prose.
- Rewrite the same canonical file through
scripts/evidence-provenance.mjs write-plan --replace --expected-plan-path <retained-read-plan-path> --expected-plan-digest <retained-read-plan-digest>: same 13 sections, context pack kept in sync, evidence header updated.--replaceis reserved for Deepen mode, and both expected values must come from the same read-plan receipt; any digest/path mismatch blocks publication. Retain the successful receipt'sprior_plan_backup_git_path; it names the verified Git-admin backup of the displaced plan. Summarize the delta in chat: claims upgraded, claims that failed re-verification, sections changed, and that backup path.
Configuration
Baseline defaults — the Phase 0 category posture overrides them, and inline
key:value tokens before the task text override both (the repo has no
skill-config file mechanism; invocation args are the mechanism):
| Knob | Default | Meaning |
|---|---|---|
depth |
by category | narrow = impact_depth 1, PDG only if one function is clearly central; default = this table; deep = impact_depth 3 + clusters/processes read |
form |
by category | compact (core sections + mini-pack, ≤80 lines excl. pack — see references/plan-template.md) or full (all 13 sections) |
impact_depth |
2 | maxDepth for impact |
pdg_data_depth |
2 | Data-dependence hops in the PDG slice |
pdg_control_depth |
2 | Control-dependence hops in the PDG slice |
max_primary_symbols |
5 | Ledger budget (active symbols; discards don't count) |
max_related_symbols |
20 | Ledger budget (active symbols; discards don't count) |
max_snippet_lines |
30 | Longest source excerpt quoted in the plan |
freshness |
by category | strict (full-plan categories) = refresh a stale index (and a missing PDG layer) with analyze --index-only [--pdg] before relying on the graph; accept (compact categories) = plan on the current graph, source-weighted and labelled, refreshing only if a graph claim becomes load-bearing |
Fallback mode (GitNexus or PDG unavailable)
- Say so, first thing, in chat and in the plan.
- Use targeted repo exploration (grep/glob/reads) to approximate callers, dependencies, execution flow, state changes, and related tests.
- Label every such finding source-derived in the plan — never present it as graph-derived, and never fabricate statement-level edges.
- Recommend
analyze --index-only(add--pdgfor the PDG layers) via the resolved runner —node .gitnexus/run.cjs, installedgitnexus, ornpx gitnexus— when it would materially raise confidence.
Skill feedback
If this run exposed friction in the instructions, include concise feedback in the final response. Feedback is chat-only: do not append evaluation learnings, edit benchmark data, or modify this skill during a live planning task.