GitNexus/AGENTS.md
Copilot 26ff700e37
refactor(pipeline): DAG-based phase architecture + container-logic extraction to LanguageProvider (#809)
* Initial plan

* refactor: move language-specific container node logic into LanguageProvider

- Add resolveEnclosingOwner hook to LanguageProviderConfig
- Add staticOwnerTypes to MethodExtractionConfig
- Implement Ruby resolveEnclosingOwner (singleton_class → class/module)
- Replace hardcoded STATIC_OWNER_TYPES with config.staticOwnerTypes
- Move Ruby static types to rubyMethodConfig
- Move Kotlin static types to kotlinMethodConfig
- Remove Ruby singleton_class branch from findEnclosingClassInfo
- Collapse seqFindEnclosingClassNode/seqFindRawEnclosingContainerNode
  into single provider-aware seqFindEnclosingOwnerNode
- Update worker path to pass provider.resolveEnclosingOwner

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/bc9f9d4d-f749-4872-9ff2-17fc86e08787

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* test: add regression tests for config-driven staticOwnerTypes and resolveEnclosingOwner hook

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/bc9f9d4d-f749-4872-9ff2-17fc86e08787

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* refactor: implement DAG-based pipeline architecture with phase extraction

Restructure the ingestion pipeline from a ~1800-line monolithic orchestrator
into a DAG (Directed Acyclic Graph) of named phases with explicit dependencies.

New files under pipeline-phases/:
- types.ts: PipelinePhase, PipelineContext, PhaseResult contracts
- runner.ts: DAG runner with topological sort validation
- scan.ts, structure.ts, markdown.ts, cobol.ts: early phases
- parse.ts + parse-impl.ts: chunked parse + resolve (the core)
- routes.ts, tools.ts, orm.ts: post-parse enrichment phases
- cross-file.ts + cross-file-impl.ts: cross-file binding propagation
- mro.ts, communities.ts, processes.ts: graph analysis phases
- index.ts: barrel export

pipeline.ts reduced from ~1960 lines to ~184 lines:
- DAG phase array declaration
- runPipelineFromRepo as thin orchestrator
- topologicalLevelSort retained for backward compat

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/136bf9c3-2f4f-449b-9fff-001332c8371c

* test: add DAG runner unit tests, update ARCHITECTURE.md with phase DAG docs

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/136bf9c3-2f4f-449b-9fff-001332c8371c

* fix: address code review - pass resolutionContext through parse output, fix worker URL path

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/136bf9c3-2f4f-449b-9fff-001332c8371c

* fix: declare transitive parse dependency explicitly in mro/communities/processes phases

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/136bf9c3-2f4f-449b-9fff-001332c8371c

* refactor: improve pipeline-phases clean code and folder structure

- Extract synthesizeWildcardImportBindings to wildcard-synthesis.ts
- Extract extractORMQueriesInline to orm-extraction.ts
- Create shared constants.ts for AST_CACHE_CAP
- Fix inline type import in orm.ts (use proper top-level import)
- Add comprehensive JSDoc to getPhaseOutput explaining type safety
- Move isDev to module level in cross-file.ts (consistency)
- Improve module-level documentation across files
- Organize barrel exports in index.ts with section comments

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/2bd6d4aa-6271-4009-8dd2-332ea8ec73ab

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* address review feedback: fix circular dep, allFetchCalls mutation, progress bugs, remove DAG naming, extract isDev, fix _item naming, fix O(n²) line calc

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/6cf53c9b-d55d-4c6f-bf3d-7bfb82d512b6

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* improve JSDoc on lineNumberAtOffset binary search

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/6cf53c9b-d55d-4c6f-bf3d-7bfb82d512b6

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* address review: filter deps in runner, move totalFiles to ctx, fix cycle JSDoc, centralize isDev, remove DAG naming

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/b388424f-b939-4a94-97de-3855f9465564

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* fix doc consistency in graph-sort.ts module-level and function-level JSDoc

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/b388424f-b939-4a94-97de-3855f9465564

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* fix(pipeline): wrap phase errors with phase name and emit terminal error progress event

Restores phase diagnostics at CLI/MCP boundary. runPipeline now wraps
phase.execute() in try/catch and rethrows with 'Phase <name> failed: ...'
preserving the original via { cause }. Also emits a terminal
{ phase: 'error' } progress event so subscribers see the failure before
the rejection propagates. Handler errors during error reporting are
swallowed to keep the original cause authoritative.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U1)

* fix(pipeline): move bindingAccumulator dispose into crossFile try/finally; make single-use

crossFile.execute() now wraps its body in try/finally so the accumulator
is released on both the happy path and when runCrossFileBindingPropagation
throws. Dev-mode telemetry stays inside the try block before dispose (all
three counters return 0 after dispose clears internal maps).

BindingAccumulator becomes single-use: appendFile after dispose now throws
'BindingAccumulator: use after dispose' instead of silently re-animating
via the old _disposed auto-clear. Docs updated; the only production
construction site (parse-impl) always creates a fresh instance per run,
so no caller relied on the re-use contract.

Residual risk documented in crossFile module JSDoc: a future phase
inserted between parse and crossFile that throws would still leak the
accumulator. Any such phase must manage accumulator lifetime explicitly.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U2)

* docs(pipeline): explain why importCtx teardown is safe before crossFile

Investigation (plan U3) confirms: `importCtx` (ImportResolutionContext)
is a scratch workspace with no downstream consumer after parse.
`resolutionContext` (returned to crossFile) is a distinct object that
owns importMap / namedImportMap / packageMap / moduleAliasMap / model,
and never closes over importCtx. cross-file-impl consumes only that
ctx via processCalls. The two confusingly-similar "context" names
were the root of the adversarial reviewer's concern — comment locks
in the invariant so the next reader sees it.

No behavioral change.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U3)

* refactor(pipeline): remove ctx.totalFiles side-channel; promote to ParseOutput

totalFiles was a hidden mutable field on PipelineContext written by
parse and read by mro/communities/processes — five reviewers flagged
this as a violation of the immutable-context invariant. Removed from
PipelineContext, which is now fully readonly, and made the implicit
temporal dep explicit: mro/communities/processes now declare 'parse'
as a dep and read totalFiles via getPhaseOutput<ParseOutput>(...).

No behavior change. Topo-sort unchanged because parse was already a
transitive dep through crossFile.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U4)

* feat(method-extractor): runtime staticOwnerTypes guard at factory chokepoint

createMethodExtractor now rejects MethodExtractionConfigs that list
companion_object / singleton_class / object_declaration in
typeDeclarationNodes but omit the matching entry from staticOwnerTypes.
Fails loudly at provider construction time instead of producing
silent isStatic=false on the 50000th file analyzed.

Opt-out convention preserved: an explicit `new Set()` (empty Set)
signals intentional exclusion and passes the guard (memory obs #30588).

All 13 existing language configs pass the guard; the new negative test
fails without it. Test-first.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U5)

* fix(pipeline): wrap sequential-fallback in try/finally so cleanup survives throws

The sequential-fallback block in runChunkedParseAndResolve now runs
inside a try/finally that guarantees astCache.clear(), accumulator
finalize, and enrichExportedTypeMap execute even if readFileContents
or processCalls throws mid-fallback. Cleanup failures are caught
inside the finally so they can't mask the original error.

Accumulator disposal ownership remains with crossFile (U2) — U6 only
adds astCache cleanup and preserves finalize ordering on the error
path.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U6)

* test(pipeline): direct unit coverage for wildcard-synthesis and cross-file-impl

Both modules previously had zero direct unit coverage — branches were
exercised only through integration tests' happy paths.

wildcard-synthesis.test.ts covers: Go graph-IMPORTS fallback, Python
moduleAliasMap build, MAX_SYNTHETIC_BINDINGS_PER_FILE cap, dedup
against existing namedImportMap entries, and empty-exportedSymbols
early return.

cross-file-impl.test.ts covers: gapRatio below threshold no-op,
MAX_CROSS_FILE_REPROCESS cap, graph-only exportedTypeMap fallback,
and empty namedImportMap short-circuit.

Tests assert current behavior — any future regression flips them.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U7)

* test(pipeline): golden-file graph-parity regression guard on mini-repo fixture

Pins the current post-P1/P2 graph output (57 symbols, 92 relationships,
4 processes, deterministic edge digest) so future silent refactors
cannot drift behavior unnoticed. If any count changes or any edge
rewires, the test fails with a readable diff listing what changed
and a copy-pasteable UPDATE_GOLDEN=1 regen command.

Edge digest keyed by symbolic (label, name, filePath) triples rather
than raw generateId output — stays meaningful across id-encoding
refactors while still catching real semantic rewiring.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U8)

* fix(pipeline): minimal cycle reporting + resolveEnclosingOwner loop safeguards

U9: runner cycle detection now reports only the SCC members via DFS
back-edge trace ('Cycle detected: A -> B -> C -> A') rather than
everything with inDegree > 0 (which mixed cycle members with blocked
dependents). Also emits the 'error' progress event for graph-
validation failures, symmetric with U1's runtime-error path.

U16: findEnclosingClassInfo now defends against language-provider
hooks that return non-container nodes — visitedContainers Set breaks
repeat-visit loops, MAX_ENCLOSING_WALK_ITERATIONS is belt-and-braces.
Documented the hook contract invariant so future provider authors
know the walk-continues-upward expectation.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U9, U16)

* refactor(pipeline): type hygiene, dead code cleanup, shared allPathSet, graph-sort naming

Bundles plan units U10, U11, U12, U14, U15:

U10 — Type hygiene: readonly ParseOutput arrays (allExtractedRoutes,
allDecoratorRoutes, allToolDefs, allORMQueries, allPaths); removed
redundant 'as string[] | undefined' cast in routes.ts and 'as URL' in
parse-impl.ts; WorkerPool is now 'import type'. Readonly contract
propagated into processORMQueries (only iterates).

U11 — Dead code & shims: deleted constants.ts shim (AST_CACHE_CAP
inlined into its sole real consumer cross-file-impl.ts; isDev
consumers now import directly from ../utils/env.js). Removed internal
utility re-exports from pipeline-phases/index.ts (no external
consumers). Removed topologicalLevelSort re-export from pipeline.ts;
updated topological-sort.test.ts to import from the canonical
utils/graph-sort.js. Stripped 'Phase 3+4:' stale JSDoc from
parse-impl.ts.

U12 — Perf: StructureOutput now carries allPathSet (ReadonlySet<string>)
built once; cobol, markdown, and cross-file-impl consume the shared
set instead of allocating their own. Parse forwards it via
ParseOutput.allPathSet; processCobol/processMarkdown widened to
ReadonlySet<string>.

U14 — graph-sort.ts: renamed local 'inDegree' to
'pendingImportsPerFile' with expanded JSDoc explaining the reverse-
graph Kahn's formulation and warning future maintainers not to
'correct' it to standard in-degree semantics. Added self-edge test.

U15 — Unconditional worker-fallback logging: removed isDev guard on
the worker-pool-creation-failure console.warn so operators can
diagnose perf degradations in production.

No behavior change. U8 golden-file test confirms pipeline output is
byte-identical.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U10, U11, U12, U14, U15)

* docs: fix ARCHITECTURE.md table integrity; bump AGENTS.md/CLAUDE.md to 1.3.0

U13 — documentation fixes:

ARCHITECTURE.md: the prior insertion of the 'Pipeline Phase DAG'
section orphaned 7 rows from the 'Where to change what' header.
Moved those 7 rows back up under their header so the table reads
contiguously; DAG section now follows the completed table.

AGENTS.md + CLAUDE.md: bumped version 1.2.0 -> 1.3.0, updated Last
reviewed to 2026-04-13, added matching Changelog row documenting
the GitNexus index stats refresh after the DAG refactor. Stat
bumps (symbols/relationships/execution flows) that were sitting
uncommitted in the working tree are now landed under a proper
changelog entry per each file's own documented schema.

Plan: docs/plans/2026-04-13-001-fix-pipeline-dag-refactor-review-findings-plan.md (U13)

* refactor(pipeline): drop spurious parse deps, true-readonly ParseOutput.exportedTypeMap, skip redundant wildcard synth

- mro/communities/processes: switch redundant `parse` dep to `structure` —
  totalFiles originates in structure, so depending on parse for it was a
  spurious data dep that obscured the real DAG.
- ParseOutput.exportedTypeMap: typed as truly ReadonlyMap<...,ReadonlyMap>>;
  graph→exports enrichment moved into parse-impl so the snapshot is
  fully populated at parse return. crossFile builds its own local mutable
  working copy for per-file re-resolution writes — no cast at the boundary.
- parse-impl: hasSynthesized flag guards the unconditional final
  synthesizeWildcardImportBindings call when per-chunk/fallback synthesis
  already ran (graph-global + idempotent across chunks).
- cross-file-impl: documented the intentional `phase: 'parsing'` progress
  label so telemetry bucketing stays consistent with the parse phase.
- cross-file-impl test: replaced the now-moved fallback-enrichment
  assertion with a stronger one — crossFile must not mutate the
  parse-supplied map.

Addresses PR #809 review pass 5 carry-overs.

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>
Co-authored-by: Gergo Magyar <gergomagyar@icloud.com>
2026-04-13 20:31:05 +01:00

205 lines
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Markdown

<!-- version: 1.3.0 -->
<!--
Metadata: version, last reviewed, scope, model policy, reference docs, changelog.
Last updated: 2026-03-22
-->
Last reviewed: 2026-04-13
**Project:** GitNexus · **Environment:** dev · **Maintainer:** repository maintainers (see GitHub)
This file uses a standard agent header (version, scope, model policy, reference docs, changelog), adapted for this **TypeScript/JavaScript monorepo**.
## Scope
| | |
|--|--|
| **Reads** | Repository tree as needed for the task: `gitnexus/`, `gitnexus-web/`, `eval/`, plugin packages, `.github/`, `.gitnexus/` when present, and docs. |
| **Writes** | Only paths required for the requested change; keep diffs minimal. Update lockfiles when dependencies change. |
| **Executes** | `npm`, `npx`, `node` under `gitnexus/` and `gitnexus-web/`; `uv run` for Python under `eval/` when applicable; shell utilities for documented CI/dev workflows. |
| **Off-limits** | User secrets (e.g. real `.env`), production deployment credentials, unrelated repositories, destructive git history operations without explicit human confirmation. |
## Model Configuration
- **Primary:** Pin in **Cursor** (Settings → model). Use a **named** model (e.g. GPT-5.2, Claude Sonnet 4.x). Avoid relying on **Auto** when reproducibility or audit trail matters.
- **Fallback:** As configured in Cursor or your organization (do not encode `latest` or wildcards in automation configs).
- **Notes:** The open-source GitNexus CLI indexer does not call an LLM. Optional Nexus AI in the web UI uses end-user provider keys and models.
## Execution Sequence (complex tasks)
Long sessions dilute instructions. For **multi-step** work, state up front:
1. Which rules in this file and **[GUARDRAILS.md](GUARDRAILS.md)** apply (and any relevant Signs).
2. Current **Scope** boundaries (Reads / Writes / Off-limits).
3. Which **validation commands** you will run (e.g. `cd gitnexus && npm test`, `npx tsc --noEmit`).
On very long threads, the human may add *“Remember: apply all AGENTS.md rules”* to re-weight rule tokens against context dilution.
## Claude Code hooks
Hooks enforce gates that prompts cannot. In **Claude Code**, **PreToolUse** hooks can block tools such as `git_commit` until checks pass. Adapt to this repo: e.g. `cd gitnexus && npm test` before commit.
## Context budget (Cursor / standards)
Generic “core standards” playbooks are often long and stack-specific. For this monorepo, commands and gotchas live under **Cursor Cloud specific instructions** below and in **[CONTRIBUTING.md](CONTRIBUTING.md)**. If always-on rules grow, split domain rules into **`.cursor/rules/*.mdc`** (globs). **Cursor:** project-wide rules live in **`.cursor/index.mdc`** (YAML frontmatter with `alwaysApply: true`). **Claude Code:** optionally load a **`STANDARDS.md`** only when needed (e.g. *“When writing new code, read STANDARDS.md”*) to save context.
## Reference Documentation
- **This repository:** **[ARCHITECTURE.md](ARCHITECTURE.md)**, **[CONTRIBUTING.md](CONTRIBUTING.md)**, **[GUARDRAILS.md](GUARDRAILS.md)**.
- **Cursor:** `.cursor/index.mdc` (always-on rules); optional `.cursor/rules/*.mdc` (glob-scoped). Legacy `.cursorrules` is deprecated — see `.cursor/index.mdc`.
- **Optional local files:** `NOTES.md` (short vendor-neutral project snapshot). For handoffs, keep notes local (e.g., a scratch file outside the repo) rather than committing `HANDOFF.md`.
- **GitNexus:** skills under `.claude/skills/gitnexus/`; machine-oriented rules in the `gitnexus:start``gitnexus:end` block below.
## Changelog
| Date | Version | Change |
|------|---------|--------|
| 2026-04-13 | 1.3.0 | Updated GitNexus index stats after DAG refactor. |
| 2026-03-24 | 1.2.0 | Fixed gitnexus:start block duplication (was inlined in Reference Docs bullet). |
| 2026-03-23 | 1.1.0 | Updated agent instructions (sections, references, Cursor layout). |
| 2026-03-22 | 1.0.0 | Added structured agent header and changelog. |
---
<!-- gitnexus:start -->
# GitNexus — Code Intelligence
This project is indexed by GitNexus as **GitNexus** (4325 symbols, 10556 relationships, 300 execution flows). Use the GitNexus MCP tools to understand code, assess impact, and navigate safely.
> If any GitNexus tool warns the index is stale, run `npx gitnexus analyze` in terminal first.
## Always Do
- **MUST run impact analysis before editing any symbol.** Before modifying a function, class, or method, run `gitnexus_impact({target: "symbolName", direction: "upstream"})` and report the blast radius (direct callers, affected processes, risk level) to the user.
- **MUST run `gitnexus_detect_changes()` before committing** to verify your changes only affect expected symbols and execution flows.
- **MUST warn the user** if impact analysis returns HIGH or CRITICAL risk before proceeding with edits.
- When exploring unfamiliar code, use `gitnexus_query({query: "concept"})` to find execution flows instead of grepping. It returns process-grouped results ranked by relevance.
- When you need full context on a specific symbol — callers, callees, which execution flows it participates in — use `gitnexus_context({name: "symbolName"})`.
## When Debugging
1. `gitnexus_query({query: "<error or symptom>"})` — find execution flows related to the issue
2. `gitnexus_context({name: "<suspect function>"})` — see all callers, callees, and process participation
3. `READ gitnexus://repo/GitNexus/process/{processName}` — trace the full execution flow step by step
4. For regressions: `gitnexus_detect_changes({scope: "compare", base_ref: "main"})` — see what your branch changed
## When Refactoring
- **Renaming**: MUST use `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` first. Review the preview — graph edits are safe, text_search edits need manual review. Then run with `dry_run: false`.
- **Extracting/Splitting**: MUST run `gitnexus_context({name: "target"})` to see all incoming/outgoing refs, then `gitnexus_impact({target: "target", direction: "upstream"})` to find all external callers before moving code.
- After any refactor: run `gitnexus_detect_changes({scope: "all"})` to verify only expected files changed.
## Never Do
- NEVER edit a function, class, or method without first running `gitnexus_impact` on it.
- NEVER ignore HIGH or CRITICAL risk warnings from impact analysis.
- NEVER rename symbols with find-and-replace — use `gitnexus_rename` which understands the call graph.
- NEVER commit changes without running `gitnexus_detect_changes()` to check affected scope.
## Tools Quick Reference
| Tool | When to use | Command |
|------|-------------|---------|
| `query` | Find code by concept | `gitnexus_query({query: "auth validation"})` |
| `context` | 360-degree view of one symbol | `gitnexus_context({name: "validateUser"})` |
| `impact` | Blast radius before editing | `gitnexus_impact({target: "X", direction: "upstream"})` |
| `detect_changes` | Pre-commit scope check | `gitnexus_detect_changes({scope: "staged"})` |
| `rename` | Safe multi-file rename | `gitnexus_rename({symbol_name: "old", new_name: "new", dry_run: true})` |
| `cypher` | Custom graph queries | `gitnexus_cypher({query: "MATCH ..."})` |
## Impact Risk Levels
| Depth | Meaning | Action |
|-------|---------|--------|
| d=1 | WILL BREAK — direct callers/importers | MUST update these |
| d=2 | LIKELY AFFECTED — indirect deps | Should test |
| d=3 | MAY NEED TESTING — transitive | Test if critical path |
## Resources
| Resource | Use for |
|----------|---------|
| `gitnexus://repo/GitNexus/context` | Codebase overview, check index freshness |
| `gitnexus://repo/GitNexus/clusters` | All functional areas |
| `gitnexus://repo/GitNexus/processes` | All execution flows |
| `gitnexus://repo/GitNexus/process/{name}` | Step-by-step execution trace |
## Self-Check Before Finishing
Before completing any code modification task, verify:
1. `gitnexus_impact` was run for all modified symbols
2. No HIGH/CRITICAL risk warnings were ignored
3. `gitnexus_detect_changes()` confirms changes match expected scope
4. All d=1 (WILL BREAK) dependents were updated
## Keeping the Index Fresh
After committing code changes, the GitNexus index becomes stale. Re-run analyze to update it:
```bash
npx gitnexus analyze
```
If the index previously included embeddings, preserve them by adding `--embeddings`:
```bash
npx gitnexus analyze --embeddings
```
To check whether embeddings exist, inspect `.gitnexus/meta.json` — the `stats.embeddings` field shows the count (0 means no embeddings). **Running analyze without `--embeddings` will delete any previously generated embeddings.**
> Claude Code users: A PostToolUse hook handles this automatically after `git commit` and `git merge`.
## CLI
| Task | Read this skill file |
|------|---------------------|
| Understand architecture / "How does X work?" | `.claude/skills/gitnexus/gitnexus-exploring/SKILL.md` |
| Blast radius / "What breaks if I change X?" | `.claude/skills/gitnexus/gitnexus-impact-analysis/SKILL.md` |
| Trace bugs / "Why is X failing?" | `.claude/skills/gitnexus/gitnexus-debugging/SKILL.md` |
| Rename / extract / split / refactor | `.claude/skills/gitnexus/gitnexus-refactoring/SKILL.md` |
| Tools, resources, schema reference | `.claude/skills/gitnexus/gitnexus-guide/SKILL.md` |
| Index, status, clean, wiki CLI commands | `.claude/skills/gitnexus/gitnexus-cli/SKILL.md` |
<!-- gitnexus:end -->
## Cursor Cloud specific instructions
### Repository structure
This is a monorepo with two main products and supporting config packages:
| Component | Path | Purpose |
|-----------|------|---------|
| **GitNexus CLI/Core** | `gitnexus/` | Main product — TypeScript CLI, indexing pipeline, MCP server. Published to npm. |
| **GitNexus Web UI** | `gitnexus-web/` | React/Vite browser app — graph explorer + AI chat. Runs entirely in WASM. |
| Claude Plugin | `gitnexus-claude-plugin/` | Static config for Claude marketplace (no build). |
| Cursor Integration | `gitnexus-cursor-integration/` | Static config for Cursor editor (no build). |
| SWE-bench Eval | `eval/` | Python evaluation harness (optional; needs Docker + LLM API keys). |
### Running services
- **CLI/Core**: `cd gitnexus && npm run dev` (tsx watch mode) or `npm run build && node dist/cli/index.js <command>`
- **Web UI**: `cd gitnexus-web && npm run dev` (Vite on port 5173)
- **Backend mode**: `cd <indexed-repo> && node /workspace/gitnexus/dist/cli/index.js serve` (HTTP API on port 3741 by default)
### Testing
**CLI / Core (`gitnexus/`)**
- **Unit tests**: `cd gitnexus && npm test` (vitest, ~2000 tests)
- **Integration tests**: `cd gitnexus && npm run test:integration` (vitest, ~1850 tests). Two LadybugDB file-locking tests (`lbug-core-adapter`, `search-core`) may fail in containerized environments due to `/tmp` locking limitations — this is a known environment issue, not a code bug.
- **TypeScript check**: `cd gitnexus && npx tsc --noEmit`
**Web UI (`gitnexus-web/`)**
- **Unit tests**: `cd gitnexus-web && npm test` (vitest, ~200 tests)
- **E2E tests**: `cd gitnexus-web && E2E=1 npx playwright test` (Playwright, 5 tests — requires `gitnexus serve` + `npm run dev` running)
- **TypeScript check**: `cd gitnexus-web && npx tsc -b --noEmit`
No separate lint command is configured; TypeScript strict checking serves as the primary static analysis.
### Gotchas
- `npm install` in `gitnexus/` triggers `prepare` (builds via `tsc`) and `postinstall` (patches tree-sitter-swift). Native tree-sitter bindings require `python3`, `make`, and `g++` to be present.
- `tree-sitter-kotlin` and `tree-sitter-swift` are optional dependencies — install warnings for these are expected and non-blocking.
- The Web UI uses `vite-plugin-wasm` and requires `Cross-Origin-Opener-Policy`/`Cross-Origin-Embedder-Policy` headers for `SharedArrayBuffer` (handled automatically by Vite dev server).
- There is no ESLint/Prettier configuration in this repo.