Commit graph

1229 commits

Author SHA1 Message Date
Gergő Magyar
9d61fd137b
Merge branch 'main' into feat/cfg-layer-m1 2026-06-10 08:15:36 +01:00
Gergő Magyar
e46651e42c
fix(embeddings): create VECTOR index via conn.query, not the prepared path (#2114)
`gitnexus analyze` silently failed to create the LadybugDB VECTOR/HNSW index because `CALL CREATE_VECTOR_INDEX(...)` was run through the prepared `conn.prepare()` path, which rejects multi-statement procedures — degrading semantic search to exact-scan. Route index creation through `conn.query()` via a new adapter-owned `createVectorIndex` (mirrors `createFTSIndex`), make the previously-swallowed error visible (`{ err }` logging), add an in-process idempotency cache, and add real-`@ladybugdb/core` regression coverage.

Fixes #2114.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-10 07:59:37 +01:00
Gergő Magyar
113b7ca899
Merge branch 'main' into feat/cfg-layer-m1 2026-06-10 06:34:16 +01:00
dependabot[bot]
43e6a3f688
chore(deps)(deps): bump js-yaml from 4.1.1 to 4.2.0 in /gitnexus (#2097)
Bumps [js-yaml](https://github.com/nodeca/js-yaml) from 4.1.1 to 4.2.0.
- [Changelog](https://github.com/nodeca/js-yaml/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nodeca/js-yaml/commits)

---
updated-dependencies:
- dependency-name: js-yaml
  dependency-version: 4.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-10 06:33:39 +01:00
dependabot[bot]
581943bbe5
chore(deps)(deps-dev): bump @types/node in /gitnexus (#2128)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 25.9.1 to 25.9.2.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node)

---
updated-dependencies:
- dependency-name: "@types/node"
  dependency-version: 25.9.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-06-10 06:32:57 +01:00
Gergő Magyar
1cf65b339c
chore: release v1.6.7 (#2126)
Bump gitnexus 1.6.6 -> 1.6.7, add the 1.6.7 CHANGELOG section (14 PRs since v1.6.6), and sync the Claude plugin manifests (plugin.json + marketplace.json) to 1.6.7.
2026-06-09 21:37:33 +01:00
gitnexus-release-bot[bot]
d0452d26a1
chore(vendor): rebuild native prebuilds (tree-sitter-c,tree-sitter-dart,tree-sitter-proto,tree-sitter-kotlin,tree-sitter-swift) (#2125)
Built by https://github.com/abhigyanpatwari/GitNexus/actions/runs/27230510159

Co-authored-by: gitnexus-release-bot[bot] <gitnexus-release-bot[bot]@users.noreply.github.com>
2026-06-09 20:57:37 +01:00
Gergő Magyar
247ea431de
fix(ci): make the prebuild PR push re-run-safe (--force-with-lease -> --force) (#2123) 2026-06-09 20:28:08 +01:00
Gergő Magyar
4682a477d8
feat(mcp): paginate list_repos to avoid client token truncation (#2119) (#2120)
* feat(mcp): paginate list_repos to avoid client token truncation (#2119)

list_repos returned every indexed repository in one unpaginated array,
which large/LLM MCP clients truncate by token limit — so agents with
hundreds of indexed repos could not enumerate them all (the data
transmits fully; the consuming client drops it).

Add bounded limit/offset pagination to the list_repos tool:
- result changes from a bare array to
  { repositories, pagination: { total, limit, offset, returned,
  hasMore, nextOffset } }; default page 50, max 200 (shared constants)
- reject malformed limit/offset; clamp limit above the max
- deterministic order (lower-cased name, then path) over one registry
  snapshot per call, so paging never skips or duplicates an entry
- covers both stdio and remote /api/mcp (shared createMCPServer/callTool)

The internal listRepos() method (5 callers), GET /api/repos, and the
`gitnexus list` CLI are unchanged. The array->object tool-result shape
is a deliberate contract change, documented in CHANGELOG.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(mcp): reject list_repos limit above the max instead of clamping (#2119)

parseListReposPagination silently clamped limit>max to the maximum while
throwing on every other out-of-bounds value (limit<1, offset<0, non-integer,
NaN). A client that advanced offset by its requested limit (rather than
pagination.nextOffset) then silently skipped repositories and saw
hasMore:false — defeating the "never skips" guarantee. Reject an over-max
limit too, so validation is symmetric and a caller never gets a smaller page
than it asked for without a clear error. Updates the schema/description, the
helper + ListReposPagination JSDoc, the guide note, and the two clamp tests.

Resolves the cross-engine-corroborated P2 (Codex + adversarial lane) and the
maintainability lane's clamp-vs-throw inconsistency from the PR #2120 review.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(mcp): name the list_repos return type and mark the parser @internal

Extract the inline listRepos() element shape into an exported RepoListing
interface and use it for both listRepos() and listReposPage().repositories,
replacing the opaque Awaited<ReturnType<LocalBackend['listRepos']>> expression
the maintainability review flagged. Tag parseListReposPagination @internal
(it is exported only for unit testing). Pure type/JSDoc change; no behavior.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(eval-server): type formatListReposResult to the paginated shape

Narrow formatListReposResult's parameter from `any` to
{ repositories: RepoListing[]; pagination?: ListReposPagination } and drop the
dead bare-array branch — after #2119 callTool('list_repos') always returns the
paginated object, so the Array.isArray shim was unreachable. Add a list_repos
continuation hint to the eval-server's getNextStepHint (parity with the MCP
server), and cover the previously-untested non-empty + hasMore:false formatter
branch. Migrates the two bare-array formatter tests to the object shape.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(mcp): harden list_repos pagination coverage

- Exercise the #2054 sibling-clone guarantee through the real callTool tool
  path (in the #2054 describe, which has temp-dir cleanup), proving siblings
  and remoteUrl survive listReposPage's sort+slice — not only listRepos().
- Assert total + limit on the middle-page test (a total miscalculation at a
  non-zero offset would otherwise slip past it).
- Cover the benign boundaries: negative-zero offset (accepted as page 0) and a
  MAX_SAFE_INTEGER offset (empty page).
- Replace the integration test's '\n\n---' split with a string-aware brace
  scan, so a repo path containing braces can never truncate the JSON parse.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(skills): sync the list_repos pagination example to the guide mirrors

The .claude and gitnexus-claude-plugin guide mirrors only carried the one-line
table note; add the full "Paginating list_repos" section (shape + multi-page
traversal example + notes) so all three guide copies are byte-consistent with
the canonical gitnexus/skills/gitnexus-guide.md.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore: drop list_repos CHANGELOG entries from this PR

Restore gitnexus/CHANGELOG.md to match main so this PR contributes no
changelog change; the changelog is curated separately from feature PRs.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 19:59:54 +01:00
Gergő Magyar
bd90d5bf90
fix(ci): green the tree-sitter prebuild matrix (npm-bundled prebuilds + arm64 runtime) (#2122)
First real dispatch of build-tree-sitter-prebuilds failed every job from two
independent root causes:

1. `c` (kind:'npm'): tree-sitter-c's npm tarball bundles prebuilds/ for all 6
   tuples, so the post-build `find ... -print -quit` picked a non-host tuple
   (win32-x64 on a linux runner) and the "built X, expected Y" assertion failed.
   Clear $pkgdir/prebuilds before prebuildify so only the freshly-built host
   tuple remains. (kotlin is npm too but ships no prebuilds, so it dodged this.)

2. every linux-arm64: validate installed tree-sitter@0.21.1 with
   --ignore-scripts, but that tarball ships no linux-arm64 prebuild, so
   require("tree-sitter") threw "No native build was found ... arch=arm64". The
   grammar's own arm64 .node loaded fine. Drop --ignore-scripts and add node-gyp
   + node-addon-api so the runtime source-builds where upstream ships no prebuild;
   prebuild-covered tuples still use the prebuild. The grammar-vs-runtime ABI
   check still fires at setLanguage.
2026-06-09 19:39:10 +01:00
Gergő Magyar
6ab3f64443
fix(ci): drop the broken -t 22 from prebuildify (build-tree-sitter-prebuilds) (#2121)
The native build step ran `prebuildify --napi --strip -t 22`, but prebuildify
parses the bare `-t 22` as the NUMBER 22 and crashes in resolveTargets
(`TypeError: v.indexOf is not a function`) — so every matrix job (c/dart/proto/
kotlin × 6 tuples) failed on its first real run. N-API prebuilds are
Node-version-agnostic, so `-t <node-version>` is both wrong and the cause; drop
it. Verified locally: `prebuildify --napi --strip` builds the vendored c source
cleanly into prebuilds/<tuple>/tree-sitter-c.node and exports
napi_register_module_v1.
2026-06-09 19:02:06 +01:00
Gergő Magyar
cef63dd044
feat(install): toolchain-free tree-sitter via vendored prebuilds (#2113)
* feat(install): toolchain-free tree-sitter via vendored GitNexus-built prebuilds

Eliminate the C/C++-toolchain requirement at install for the at-risk grammars
(dart, proto, kotlin) by generating + vendoring native prebuilds, mirroring the
existing vendored tree-sitter-swift. The 10 grammars that already ship 6 upstream
prebuilds stay npm dependencies (toolchain-free AND dependency-review-tracked).

- .github/workflows/build-tree-sitter-prebuilds.yml: a registry-parameterized
  workflow that builds {dart,proto,kotlin} x {linux,darwin,win32}-{x64,arm64}
  prebuilds natively, validates each loads + parses on its arch, and opens a PR
  vendoring them. A `guard` job gates the heavy matrix to run ONLY on dispatch
  or a real grammar-version change — ordinary code PRs cost zero matrix minutes.
- dart/proto: prefer a committed prebuild; fall back to today's source build
  when none matches (no behavior change until prebuilds are vendored).
- kotlin: vendor it (Swift parity) instead of compiling the third-party
  optionalDependency from source at the user's install — supersedes #2110's
  optionalDependency mechanism. The ~23 MB parser.c is NOT vendored (the
  workflow builds from the published package); only node-types + bindings +
  prebuilds are. Removed from optionalDependencies; lock regenerated; probe,
  parser-loader note, README/.devcontainer docs, and the #2110 tests updated.

DO NOT MERGE until vendor/tree-sitter-kotlin/prebuilds/ is populated by the
build-tree-sitter-prebuilds workflow: until then Kotlin is unavailable (vendored
with no source-build fallback). dart/proto remain fully functional throughout.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(install): guard 6/6 N-API prebuild coverage for every grammar

Regression guard so a toolchain-less install can never silently lose a tree-sitter
language on a supported platform-arch:

- Vendored grammars (vendor/tree-sitter-*): every one MUST ship a loadable N-API
  prebuild for all 6 tuples {linux,darwin,win32}-{x64,arm64}. Asserts the
  napi_register_module_v1 entry symbol in each .node (cross-platform, no need to
  run the binary). Currently RED for dart/proto/kotlin until the
  build-tree-sitter-prebuilds workflow populates their prebuilds/ — this is the
  must-fill-before-merge gate (swift already passes 6/6).
- npm-dependency grammars: asserts upstream ships 6/6 N-API too, catching a
  future platform drop. tree-sitter-c is allow-listed at 4/6 (missing
  linux-arm64/win32-arm64) pending #2116; the guard also fails if that gap is
  silently closed (prompting allow-list removal).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(install): vendor tree-sitter-c at 0.21.4 with GitNexus-built prebuilds (#2116)

tree-sitter-c is the one grammar dependency upstream ships incomplete prebuilds
for (4/6 — no linux-arm64/win32-arm64), AND it is a REQUIRED grammar: its own
`install` (node-gyp-build) compiles from source when no prebuild matches and
exits non-zero, so on a toolchain-less ARM host `npm install gitnexus` HARD-FAILS
at the c step — during npm's dependency phase, before any GitNexus postinstall
runs (so a postinstall "supplement" can't help).

Fix: vendor c prebuild-only at the pinned 0.21.4 (Kotlin pattern), with all six
prebuilds GitNexus-cross-built, and drop it from `dependencies`:
- vendor/tree-sitter-c/ (bindings + node-types + manifest + prebuilds); build
  probe scripts/build-tree-sitter-c.cjs; added to the build workflow registry
  (kind 'npm' — built from c@0.21.4 source).
- materialize-vendor-grammars.cjs: c is REQUIRED, so it is always materialized,
  even under GITNEXUS_SKIP_OPTIONAL_GRAMMARS (it needs no toolchain).
- Removed from package.json dependencies + lockfile (nothing else needs npm c —
  tree-sitter-cpp's dep on c is dev-only and not installed). Preserves the #1242
  ABI pin: vendoring 0.21.4 keeps the good ABI while closing the ARM gap.
- parser-loader note + the prebuild-coverage guard + a cli-commands assertion
  updated; c moves from the npm-gap allow-list into the vendored 6/6 cohort.

Verified: tsc clean, 31 unit tests pass, c loads/parses; the guard is RED for
c/dart/proto/kotlin until the workflow populates prebuilds (the must-fill gate).
Closes the operational risk in #2116.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ci): source-build fallback for vendored c/kotlin so CI is healthy pre-prebuilds

The vendored prebuild-only grammars (c, kotlin) had empty prebuilds/ until the
build-tree-sitter-prebuilds workflow runs, so they could not load in CI — and
C is hard-required by cross-platform tests (tree-sitter-languages/parsing on
ubuntu+macos+windows), which I cannot pre-build for macos/windows locally. The
robust fix is a source-build fallback that works on every CI runner (all have a
toolchain), mirroring dart/proto:

- Vendor the grammar source (binding.gyp + src/) for c and kotlin; their build
  scripts now PREFER a committed prebuild (toolchain-free) and fall back to
  `node-gyp rebuild` from the vendored source when no prebuild matches. Verified
  both compile against the hoisted node-addon-api@^8 and the runtime loads.
- prebuild-coverage guard is now bootstrap-tolerant: a grammar that vendors its
  source (binding.gyp) may have an incomplete prebuild set (the workflow fills
  it); a prebuild-only grammar (swift) still must ship all six. Any present
  prebuild must still be N-API. Guard goes green; it re-tightens per-grammar as
  the workflow populates prebuilds.
- actionlint: silence a false-positive SC2016 (JS template literals inside the
  single-quoted `node -e` validate block).

Note: kotlin's generated parser.c is large (~23 MB on disk; compresses heavily
in git). Once the workflow populates all six kotlin prebuilds, the source serves
only as the fallback and could be slimmed if desired.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(docker): re-materialize+rebuild vendored grammars after npm prune

`npm prune --omit=dev` in the gitnexus CLI image drops anything not in
package.json's dependency tree — including the VENDORED tree-sitter grammars
(materialized by postinstall, not declared deps) and their built bindings. The
`serve` image analyzes/parses repos at runtime, so re-run the grammar postinstall
after the prune (in the toolchain-equipped builder) to restore them. Load-bearing
for tree-sitter-c, a core REQUIRED grammar now vendored (#2116): as a former
dependency it survived prune; vendored, it would not. Also restores
swift/dart/proto/kotlin, which were silently pruned from the image before.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(grammars): unify tree-sitter-swift with the vendored-source build pipeline

Swift was the last grammar handled differently — it shipped only upstream
prebuilds, while c/dart/proto/kotlin vendor their grammar source and use a
prefer-prebuild -> source-build-fallback activation script. Vendor swift's
source so all five are handled identically (one uniform build path).

- vendor/tree-sitter-swift: add binding.gyp (win-hardened), bindings/node/
  binding.cc, src/parser.c (ABI-14 default, ~18 MB), src/scanner.c, and
  src/tree_sitter/ headers. The 6/6 prebuilds are retained. The legacy
  parser_abi13.c alternate is intentionally not vendored.
- build-tree-sitter-swift.cjs: rewrite the prebuild probe into the dart-style
  prefer-prebuild then source-build fallback (keeps the GITNEXUS_SKIP gate and
  the never-exit-non-zero postinstall invariant).
- build-tree-sitter-prebuilds.yml: register swift (kind 'vendored'); add its
  package.json to the version-gated pull_request paths and a validate snippet.
- prebuild-coverage guard auto-moves swift into the source-fallback cohort
  (binding.gyp now present); refresh the stale "swift is prebuild-only" comments.
- tests: add build-tree-sitter-swift-probe.test.ts; fix the pre-existing
  build-tree-sitter-kotlin-probe.test.ts breakage (it still asserted the old
  probe strings after kotlin's dart-style conversion); assert swift's vendored
  source in cli-commands.test.ts.
- docs: README / .devcontainer / kotlin vendor README — swift's prebuilds are
  now GitNexus-cross-built from vendored source like the rest, not upstream-only.

Verified: swift source-builds against node-addon-api@8 -> N-API binary -> loads
against the pinned tree-sitter@0.21.1 (ABI 14) -> parses cleanly.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(publish): gate a lean prebuilds-only npm tarball behind a coverage guard

Vendoring grammar source (parser.c) alongside the prebuilds means the npm
tarball now carries ~50 MB of generated source it almost never compiles (every
supported platform-arch has a prebuild). Prepare to drop it from the published
package once all prebuilds exist — safely.

- .npmignore: add a GATED, commented-out "lean publish" block that excludes the
  source-build inputs (parser.c/scanner.c/tree_sitter/binding.gyp/binding.cc) but
  keeps prebuilds/ + the runtime files. Uncommenting ships prebuilds-only.
- scripts/assert-publish-grammar-coverage.cjs: a prepack guard that refuses to
  pack/publish if the source exclusion is active while any vendored grammar still
  lacks 6/6 prebuilds (which would ship a grammar with no loadable binding). Wired
  into `prepack` (runs on npm pack + publish, incl. the publish.yml dry-run) and
  exposed as `npm run assert-publish-coverage`.
- test: pure-core decision cases + a real-repo publish-safety check that fails CI
  if .npmignore is activated prematurely.

Net: the prebuilds already publish today (files: ["vendor"]); this makes the
future switch to a prebuilds-only tarball a one-line uncomment that can't ship a
dead grammar. The guard currently reports "source + prebuilds" (only swift has
6/6 prebuilds so far) and passes.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(grammars): consolidate the 5 build-tree-sitter-*.cjs into one

The per-grammar activation scripts (c/dart/proto/swift/kotlin) were ~95%
identical — same prefer-prebuild → source-build → never-fail flow, differing only
in name, target_name, required-vs-optional, and the display label in warnings.

- scripts/build-tree-sitter-grammars.cjs: one registry-driven script. Bare call
  builds all (postinstall); `... <name>` builds only the named grammars (so the
  probe test can isolate one). c is `required: true` (ignores the opt-out gate);
  the rest honor GITNEXUS_SKIP_OPTIONAL_GRAMMARS. Per-grammar try/catch + a final
  process.exit(0) preserve the postinstall never-exit-non-zero invariant.
- package.json: postinstall is now `materialize && build-tree-sitter-grammars.cjs`
  (was five chained `build-tree-sitter-<name>.cjs` calls).
- tests: replace the two near-identical *-probe.test.ts files with one
  parameterized build-tree-sitter-grammars-probe.test.ts that also covers the
  required-vs-optional opt-out split and an unknown-grammar arg.
- update cli-commands.test.ts postinstall assertions + the vendor c/kotlin/swift
  README + swift provenance to reference the consolidated script.

Behavior is preserved (warnings normalized to one consistent format). Removes 5
scripts + 1 test file; adds 1 script + 1 test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ingestion): lazy-load tree-sitter-c to prevent module-load crash

tree-sitter-c is now vendored prebuild-only (#2116) with 0/6 committed
prebuilds, so on a toolchain-less or `--ignore-scripts` install C has no native
binding. Three modules loaded it via a hard top-level `import C from
'tree-sitter-c'`, which throws ERR_MODULE_NOT_FOUND at module-load — crashing
`analyze` before parser-loader's optional/severity:error degradation can run.
This is the #2091/#2093 bug class (previously fixed for swift/dart/kotlin); C was
left static because it used to be an always-present npm dependency.

- languages/c/query.ts: load via the lazy guarded getLanguageGrammar(C), mirroring
  swift/query.ts; the main-thread isLanguageAvailable filter ensures the getters
  are reached only when C is present.
- workers/parse-worker.ts: guarded `_require('tree-sitter-c')` + conditional
  languageMap spread, like swift/dart/kotlin.
- group/extractors/include-extractor.ts: guarded `_require`; getLanguageForFile
  returns null for .c/.h when absent, so C include-extraction degrades to a no-op
  (C++ unaffected).
- extend the registry-import-closure regression test (#2091/#2093) to assert C
  also loads lazily at registry static-import time.

* fix(ci): repin attest-build-provenance to the real v2.4.0 SHA

The workflow pinned actions/attest-build-provenance@bd77c077… commented
`# v2.4.0`, but v2.4.0 is e8998f94… (verified via the GitHub API); bd77c077…
is an untagged mid-stream commit, so the SLSA-attestation step ran unvetted
action code and the comment misrepresented what runs. Repin to the real
v2.4.0 commit and drop the `# PLACEHOLDER-PIN` markers on both this line and
the setup-python pin (a26af69b… is already the correct v5.6.0 — only its
comment was stale). Update the header NOTE accordingly.

* fix(ci): skip the prebuild-PR aggregate when release App secrets are absent

The aggregate job mints a GitHub App token as its first step; with
RELEASE_APP_ID/RELEASE_APP_PRIVATE_KEY unset it hard-failed AFTER a full
(up-to-6-runner) native build. Since the `secrets` context isn't available in
a job-level `if:`, the guard job now computes a `release_app` boolean output
(a step can read secrets) and emits an actionable `::notice::`; aggregate
gates on it and skips cleanly, while the build job's artifacts still upload
(run with open_pr=false for artifacts-only).

* chore(ci): drop package-lock.json from the prebuild paths filter; widen build timeout

`gitnexus/package-lock.json` changes on nearly every dependency PR, so it
fired the prebuild workflow's guard job on unrelated churn (the matrix stayed
correctly skipped — `gitnexus/package.json` already covers the transition-window
pin, so removing the lock only drops guard noise). Also bump the native build
job timeout 30 -> 45 min for headroom compiling the 23 MB kotlin / 18 MB swift
parser.c, especially under arm emulation.

* fix(ci): event-gate the aggregate open-PR condition explicitly

`inputs.open_pr` is null on pull_request events, and the prior
`inputs.open_pr != false` leg relied on GHA's direction-ambiguous null
coercion (Codex F4) to decide whether to open the prebuild PR. Gate
explicitly on the event: a non-fork pull_request that bumped a grammar
version opens the prebuild PR (the documented flow), and `open_pr` is only
consulted on workflow_dispatch — so a manual run with open_pr=false stays
artifacts-only and no event's behavior rests on coercion.

* fix(publish): validate the effective npm-pack contents in the coverage guard

The publish guard inferred "is source shipped?" from a single .npmignore toggle
line, which a partial/out-of-order edit could defeat (exclude binding.gyp but
leave parser.c → unbuildable yet "source-shipping"). It now inspects the
EFFECTIVE tarball via `npm pack --dry-run --ignore-scripts --json` (the
--ignore-scripts avoids re-entering this guard through prepack): a grammar
"ships source" only when EVERY on-disk source-build input (binding.gyp +
binding.cc + parser.c + scanner.c when present + a tree_sitter header) is
actually in the packed file list.

This also surfaced that the gated lean-publish .npmignore block was inert:
package.json's `files: ["vendor"]` allow-list overrides .npmignore for the
vendored subtree, so those exclusion lines never dropped anything. Replace the
dead toggle with documentation of the real mechanism (narrow the `files` field)
and note the guard enforces safety on the effective pack regardless of how the
slim is done.

* test(prebuild): hard-gate declared-fully-prebuilt grammars on 6/6 coverage

The strict 6/6 prebuild assertion was dormant whenever a grammar vendors source
(binding.gyp) — which is every grammar — so a dropped prebuild passed CI
silently. Add a FULLY_PREBUILT allowlist of grammars GitNexus has committed 6/6
for (today: swift); those must keep all six even with a source fallback, so
losing one now fails CI. Grammars graduate into the set as the
build-tree-sitter-prebuilds workflow lands their binaries. (The static-import
degradation smoke is covered by the registry-import-closure regression test
extended in the C lazy-load commit.)

* chore(deps): promote node-gyp-build/node-addon-api to regular dependencies

Every vendored grammar's index.js does `require("node-gyp-build")` at runtime
to load even a prebuilt .node, so node-gyp-build is runtime-load-critical (and
node-addon-api is needed for the source-build fallback). They were
optionalDependencies, surviving `--omit=optional` only via the required
tree-sitter's transitive edge — correct today but fragile. Promote both to
regular dependencies so the contract is explicit (optionalDependencies is now
empty and removed). Lock the contract with a cli-commands assertion.

* chore(vendor): add Windows cflags parity block to tree-sitter-c/binding.gyp

c's binding.gyp used an unconditional `cflags_c: ["-std=c11"]`, while
kotlin/swift gate MSVC flags behind an `OS=='win'` condition (/std:c11 /utf-8).
Inert today (no non-ASCII bytes in c's parser.c, and node-gyp ignores cflags_c
on MSVC anyway), but align the three so a future source-build fallback on
Windows behaves consistently.

* docs(agents): correct stale optional-grammar / postinstall notes

AGENTS.md still said postinstall "patches tree-sitter-swift, builds
tree-sitter-proto" and that only kotlin/swift are "optional". Update to the
vendored-uniform model: postinstall materializes the vendored grammars and
prefers a committed prebuild (source-build only when none matches); c is
required while dart/proto/swift/kotlin are optional + skippable via
GITNEXUS_SKIP_OPTIONAL_GRAMMARS=1, with non-fatal warnings only on a
toolchain-less host with no matching prebuild.

* fix(install): preserve the backup and warn loudly on a failed materialize rollback

If renameSync(partial, dest) failed AND the rollback renameSync(backup, dest)
also failed, the grammar was left unmaterialized (node_modules/<name> missing)
with only a generic "could not materialize" warning — the recoverable backup at
<dest>.materialize-bak was unmentioned. Emit a CRITICAL warning naming the
backup path and the recovery command on that double-failure, and document that
the fail-soft catch removes only the scratch `partial`, never the `backup`
(which may be the sole recoverable copy). Never-throw / exit-0 contract intact.

* fix(publish): make the coverage guard's npm-pack inspection script-safe

The prepack guard shelled out to `npm pack --dry-run --ignore-scripts --json`,
but the `--ignore-scripts` flag is not reliably honored by npm pack's
prepare/prepack lifecycle on the CI npm — so build.js ran, polluted the --json
stdout with `[build] …`, and the guard's JSON.parse threw. That broke every
`npm pack` (packaged-install-smoke on ubuntu+windows) and failed the guard's own
real-repo unit test (the only coverage-job failure). Force script-skipping via
the reliable `npm_config_ignore_scripts` env config (also removes the prepack
re-entry/recursion risk) and parse defensively from the JSON-array start.

* fix(publish): make the coverage guard deterministic — read `files`, not `npm pack`

The npm-pack-based guard timed out in CI: `npm pack`'s prepare/prepack lifecycle
is not skipped by `--ignore-scripts` (flag or env config) on the CI npm, so the
inner pack ran the full build (~20s+) — fine for the slow smoke job, but it blew
past vitest's 30s test timeout in the coverage job (and risked re-entering this
prepack guard).

Replace it with a deterministic, fast (~0.1s) check that needs no subprocess:
since `files: ["vendor"]` OVERRIDES `.npmignore` for the vendored subtree (so
`.npmignore` can never drop vendored source — verified), the ONLY lever that can
exclude source is narrowing the package.json `files` field. The guard now reads
`files` directly: a grammar "ships source" iff `files` includes the vendor
subtree AND the grammar carries a buildable source set on disk. A lean publish
that narrows `files` while a grammar lacks 6/6 prebuilds still fails the gate.

* feat(ci): vendored tree-sitter grammar update monitor

Adds a weekly (+ dispatchable) workflow that checks each vendored grammar against
its source-of-origin (npm for swift/kotlin, the GitHub default branch for
dart/proto; c is excluded — held at 0.21.4 for ABI safety) and opens a PR
re-vendoring any update that is ABI-COMPATIBLE with the pinned tree-sitter@0.21.1
(LANGUAGE_VERSION 13-14).

ABI awareness is the point: most upstreams have moved to ABI 15 (newer
tree-sitter), so a blind "bump to latest" would open PRs that can't build. The
monitor fetches the candidate source, reads its parser.c LANGUAGE_VERSION, and
only re-vendors 13/14 — incompatible updates are reported (notice + job summary),
never applied. (Confirmed live: dart/proto upstreams are ABI 15 today and are
correctly held; swift/kotlin are current.)

The re-vendor refreshes only the source-build inputs + runtime entrypoints,
preserving the GitNexus-hardened binding.gyp / README / prebuilds; the version
bump then triggers build-tree-sitter-prebuilds.yml, whose ABI-validation is the
final safety net so a subtly-wrong re-vendor can't silently ship. PR creation is
gated on the RELEASE_APP secret (skips with a notice if absent), mirroring the
build aggregate. Unit test locks the ABI gate; the script is import-safe.

* feat(ci): monitor tree-sitter-c too (report-only, ABI-pinned)

c was excluded from the update monitor, so an upstream c update went unnoticed.
Include it, but as report-only via a `hold`: c is ABI-pinned at 0.21.4
(#1242/#858) and must not auto-bump without a tree-sitter runtime upgrade, so an
available c update is detected + surfaced (notice + job summary) but never
auto-PR'd — even if it were ABI-13/14. `--apply c` refuses defensively. (Live:
upstream c is 0.24.1 / ABI 15 today, so c is doubly held — reported, not applied.)

* fix(ci): drop the shell in the grammar monitor's github fetch (CodeQL)

CodeQL flagged the GitHub-tarball fetch — it used `bash -c "gh api …/tarball/$ref
> src.tgz && tar xzf src.tgz"`, interpolating the API-derived ref into a shell
command (the shell-command-injection family: "this shell command depends on an
uncontrolled file name"). Replace it with a shell-free path: capture `gh api`'s
binary tarball as a Buffer via execFileSync, write it to a fixed file, and
extract with execFileSync('tar', …). No shell, no injection surface. Verified the
dart/proto fetch + ABI read still work.

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 18:16:24 +01:00
Nilotpal Kashyap
1716bf7c1e
feat(cli): add gitnexus uninstall to reverse setup (#2060) (#2062)
* feat(cli): add `gitnexus uninstall` to reverse setup (#2060)

`gitnexus uninstall` was documented in #168 but never implemented, so the
CLI rejected it with "error: unknown command 'uninstall'" (#2060).

Add an `uninstall` command that reverses `gitnexus setup` target-by-target:
removes the GitNexus MCP server entries (Cursor, Claude Code, Antigravity,
OpenCode, Codex), the installed skill directories, and the Claude Code /
Antigravity hook entries plus their bundled hook scripts. Edits are surgical
and idempotent — only gitnexus-owned keys/entries/dirs are touched, and JSONC
comments/indentation are preserved. Defaults to a dry-run preview; `--force`
applies. Per-repo indexes and the global npm package are left alone with
printed hints, since both are destructive in ways setup never caused.

Adds i18n entries (en + zh-CN), help wiring, README/CHANGELOG docs, and unit
tests covering MCP/hook/skill/Codex-TOML removal, dry-run, corrupt-file
safety, and the no-op case.

* changelog changes

* changelog changes

* fix(cli): harden uninstall against data-loss edge cases (review #2062)

Address review findings on the uninstall command:

- Empty derived skill name no longer wipes the whole skills dir: a bare
  '.md' source file would make basename() return '', resolving to the
  skills dir itself. Skip empty names in derivation and reject
  empty/'.'/'..'/separator names in removeSkillsFrom.
- Corrupt settings.json no longer orphans the hook: gate the hook-script
  dir removal on status !== 'corrupt' so we don't delete a script while a
  still-registered entry points at it (Claude + Antigravity blocks).
- Hook removal is now element-granular: delete only the gitnexus command
  inside an entry's hooks[], removing the whole entry only when it becomes
  empty. Preserves a user command co-located in the same entry.
- Fallback TOML stripper: also remove descendant sub-tables
  ([mcp_servers.gitnexus.env]), track multiline strings so a bracketed
  line inside a value isn't treated as a header, and stop reflowing
  unrelated blank lines.
- Set process.exitCode=1 on partial failure; add a 10s timeout to
  'codex mcp remove'.

Tests expanded 7 -> 17: empty-skill guard, corrupt-settings hook
preservation, shared-entry hook removal, OpenCode MCP keyPath,
Antigravity MCP + AfterTool hooks, codex-remove success path, TOML
sub-table + multiline-string cases, dry-run for hooks/skills, and the
directory-layout skill branch.

* refactor(cli): share setup/uninstall target map + harden TOML fallback (review #2062)

Maintainer review follow-ups:

- Extract editor target identities into editor-targets.ts (MCP paths/keyPaths,
  Codex TOML section, skill dirs, hook settings/events/needles/script dirs,
  shared detectIndentation). Both setup.ts and uninstall.ts consume it, so a
  target change updates both sides — killing the silent drift hazard.
- Add a setup -> uninstall round-trip integration test that iterates
  getEditorTargets(): setup writes every target, uninstall removes all of them,
  and a co-located user MCP server + user hook survive. Drift tripwire in both
  directions.
- Preview now prints the exact paths it would remove; command output + README
  state skills are matched by bundled gitnexus skill name. (Provenance marker
  deferred to a tracked follow-up.)

Hardening of the hand-rolled Codex TOML fallback (found in code review):
- Strip a section header that has a trailing inline comment (was matched as a
  header but failed the exact classify check -> section left behind while
  reported removed).
- Preserve CRLF line endings instead of rewriting the whole file to LF.
- Fix multiline-string scan: a line with an odd count of BOTH """ and '''
  no longer mis-picks the delimiter and desyncs the scanner (left->right scan).
- removeSkillsFrom guard also rejects absolute names.

Regression tests added for each. Full setup/uninstall suite green.

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-09 10:50:18 +01:00
Gergő Magyar
895c16f35b
Merge branch 'main' into feat/cfg-layer-m1 2026-06-09 09:04:12 +01:00
Gergő Magyar
f1151660b9
fix(install): graceful Kotlin optional-grammar install + accurate toolchain docs (#2110)
Some checks are pending
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* fix(install): document Kotlin optional-grammar toolchain behavior + graceful install probe

tree-sitter-kotlin is a third-party npm optionalDependency that ships
source-only (no upstream prebuilds) and compiles its native binding via
node-gyp at install. It was the only optional grammar without a GitNexus
install-time probe, and the README's GITNEXUS_SKIP_OPTIONAL_GRAMMARS
"no toolchain needed" note omitted Kotlin entirely. This adds a fail-soft
probe (mirroring the Swift one) that warns clearly and always exits 0 so
install never breaks, wires it into postinstall, and corrects the
optional-grammar docs in README.md and .devcontainer/README.md. Shipping
prebuilt .node binaries (the literal request) needs an upstream/CI build
matrix and is intentionally left as follow-up.

Refs #2107

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix: address PR #2110 tri-review findings (Kotlin optional-grammar install)

Addresses the four P2 findings from the PR #2110 tri-review:

- F1: docs no longer imply GITNEXUS_SKIP_OPTIONAL_GRAMMARS=1 skips Kotlin's
  toolchain. npm compiles tree-sitter-kotlin via its own node-gyp-build step
  regardless of that variable; point to `npm install --omit=optional` as the
  real lever (README.md + .devcontainer/README.md).
- F2: the install probe now surfaces its "Kotlin unavailable" guidance on the
  dir-absent branch — the dominant toolchain-less case, where npm prunes the
  failed optional dependency so the package dir is gone at postinstall. Gated on
  npm_config_omit so a deliberate `--omit=optional` stays silent. Still never
  throws or exits non-zero.
- F3: add a behavioral test that executes the probe across its skip /
  dir-absent-warn / dir-absent-omit-silent paths and asserts exit code 0
  (guards the postinstall "never exit non-zero" invariant a static assertion
  cannot).
- F4: reframe prebuilt Kotlin as deferred Swift-parity follow-up — GitNexus
  already vendors its own self-built Swift prebuilds and could do the same for
  Kotlin — tracked in #2107, not an upstream-only blocker.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 09:04:01 +01:00
Gergő Magyar
cf62aa7fa2
Merge branch 'main' into feat/cfg-layer-m1 2026-06-09 08:47:20 +01:00
Gergő Magyar
288b96f3e5
fix: batch query enrichment, bake FTS extension into CLI image, add FTS memory repro (#2108)
* perf(query): batch per-symbol process/cohesion/content lookups (N+1 -> 2-3)

Port of the local-backend query-batching from gitnexus-enterprise PR #222
into the OSS local MCP backend. The query tool traced each matched symbol
to its processes + cohesion (+ content) with up to 3N sequential pool
round-trips; batch them into 2-3 'WHERE n.id IN $nodeIds' queries keyed
back to each symbol by a prepended 'n.id AS nodeId' column. Output is
identical: the aggregation loop is unchanged, iterates merged in the same
order, and reads pre-fetched maps instead of issuing a query per symbol.

Adaptations over a blind cherry-pick (would otherwise change output):
- per-nodeId first-row community pick replaces the per-symbol LIMIT 1, so
  each symbol keeps its own community (not one for the whole batch);
- batched rows regrouped to the originating merged item by nodeId so the
  JS-side RRF item.score still drives process ranking;
- positional fallbacks shift +1 (process row[1..6], cohesion [1]/[2],
  content [1]); CodeRelation{type:...} relation form kept; IN-list chunked
  at 100 like the impact path.

Adds a regression test asserting per-node community/content association
(func:login keeps comm:auth; func:validate inherits no community).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(docker): bake LadybugDB FTS extension into the CLI/serve image

The container runs `serve` under the default `load-only` extension policy
(the read pool pins {policy:'load-only'}), so a runtime LOAD EXTENSION fts
never INSTALLs. Dockerfile.cli copied the extension installer but never ran
it, so the runtime user's HOME had no FTS extension: keyword search
silently degraded (no FTS indexes written, ranking falls back to
vector-only with only a warning field). Same class of footgun fixed for
the Hub image in gitnexus-enterprise PR #222.

Run install-duckdb-extension.mjs as the `node` user with the runtime HOME
so INSTALL fts materializes the extension under $HOME/.lbdb/extension where
the runtime LOAD resolves it offline. Pin ENV HOME=/home/node because
Docker does not derive HOME from USER — without it the build-install and
runtime-load would resolve different paths. Verified locally: INSTALL lands
in $HOME/.lbdb/extension/0.17.0 and a fresh offline load-only
`LOAD EXTENSION fts` resolves it. Dockerfile.web is unaffected (static
frontend, no @ladybugdb backend).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(lbug): FTS evict->reload RSS repro + inert pool RSS tracing

Settles the gitnexus-enterprise PR #222 root-cause hypothesis for OSS:
does re-running LOAD EXTENSION fts on every pool evict->reload strand the
native FTS arena (unbounded RSS growth in long-lived MCP serve), or does
db.close() reclaim it (bounded by MAX_POOL_SIZE)? Static read could not
decide — the native lbugjs.node binary documents no close->extension-unload
contract.

Adds gitnexus/scripts/bench/fts-evict-reload-rss.mjs: a NATIVE mode that
reproduces the exact native sequence doInitLbug()+closeOne() perform
(open Database -> Connection -> LOAD EXTENSION fts -> QUERY_FTS_INDEX ->
close) across K self-built FTS fixtures, and a --via-pool mode that drives
the real compiled pool (initLbug/executeParameterized/closeLbug) against an
existing analyzed repo. Plus a behavior-neutral GITNEXUS_POOL_RSS_TRACE=1
stderr trace on pool init/close (stdout reserved for MCP JSON-RPC; single
env read when disabled).

RESULT (native, 24 and 40 cycles x 6 fixtures, --expose-gc): PLATEAU. RSS
warms up to ~400 MB then flattens (40-cycle: +36 MB over cycles 1-10, +3 MB
over 30-40; decelerating), not the linear climb a per-reload arena leak
would produce (240 reloads x stranded arena = multi-GB). db.close()
reclaims the FTS arena. The unbounded-leak hypothesis is NOT reproduced for
the OSS path: the pool's LRU eviction + close-on-evict BOUNDS the footprint,
which is exactly the protection the enterprise Hub supervisor lacked (it
opened bridge DBs in-process without eviction -> 15 GB). => plan U4
(worker/process isolation) is NOT justified by this evidence; U1 + U2 are
the only OSS-shared changes. Caveat: small fixtures + awaited close; a
--via-pool run against a large analyzed repo over a long session is the
production-faithful follow-up (instrumentation is in place for it).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(review): apply ce-code-review autofix feedback (#222 migration)

Adversarial review found the U3 bench PLATEAU->no-leak conclusion was
over-claimed from a 600-row fixture: a size-proportional FTS-arena leak
would be sub-threshold at that scale. Strengthen the bench and make its
verdict honest:
- scale the fixture (--rows, UNWIND batch insert), probe ALL 5 FTS indexes
  in --via-pool (not 2 of 5), add a --no-await-close variant (the pool
  fire-and-forget close shape), and replace the absolute-delta gate with a
  SLOPE-DECELERATION 3-way verdict (PLATEAU / CLIMB / INCONCLUSIVE) plus
  step-discontinuity detection. At production-representative scale the
  synthetic runs are noisy/INCONCLUSIVE (deceleration argues against an
  UNBOUNDED leak but does not prove bounded), so plan U4 stays GATED on a
  --via-pool run against a real large analyzed repo -- not closed.
- Dockerfile.cli: source the scratch-DB size from ENV GITNEXUS_LBUG_MAX_DB_SIZE
  (single source of truth) and add a build-time verify-only LOAD gate
  that fails the build on a HOME/extension-dir mismatch instead of silently
  degrading runtime keyword search.
- install-duckdb-extension.mjs: additive verify-only mode (LOAD-only in a
  fresh process) + robust size parse; back-compatible with the runtime
  positional-size caller (validated).
- tests: wire func:validate into a second process (proc:beta-flow) so the
  batched STEP_IN_PROCESS row[1..6] positional shift is exercised by a
  genuine multi-process symbol, and assert process ranking. No blast radius
  (75 seed-consuming tests pass).
- pool-adapter.ts: trim the traceRss narrated-code comment (DoD 2.3).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(bench): classify a sustained sub-floor RSS slope as INCONCLUSIVE, not PLATEAU

Tri-review P2: the FTS evict->reload verdict short-circuited to PLATEAU
whenever secondHalfSlope < SUSTAIN_FLOOR, BEFORE the deceleration check —
so a sustained (non-decelerating) linear leak below 0.5 MB/cycle was
labeled PLATEAU ("no leak"), the label that would wrongly close plan U4.

Extract median/slopeMbPerCycle/classifyVerdict into a pure, side-effect-free
fts-rss-verdict.mjs (zero imports) so it is unit-testable without loading the
native addon or running the bench, and fix the classifier:
- epsilon-first gate: a truly flat tail (< 0.1 MB/cycle) is PLATEAU regardless
  of decelRatio (guards against over-correcting a real negative into
  INCONCLUSIVE);
- a sustained sub-floor positive slope (>= epsilon, < floor, decelRatio >= 0.6)
  is INCONCLUSIVE — a slow creep RSS cannot distinguish from noise at this
  scale, so the honest label is "not resolved", never a clean PLATEAU;
- the noise floor now scales with the WORKING-SET growth (peak-baseline), not
  the pre-DB baseline RSS (which is interpreter/addon overhead, larger in
  --via-pool mode, and would inflate the floor and HIDE leaks).

Reconcile the stale "per-row-relative delta floor" docstring; add floor +
decelRatio to the MACHINE line. New fts-rss-verdict.test.ts pins all label
boundaries (flat->PLATEAU, sustained-sub-floor->INCONCLUSIVE,
decelerated->PLATEAU, sustained-linear->CLIMB, step->INCONCLUSIVE,
working-set floor, no import side effects). U1 does NOT add detection power
for sub-floor leaks (RSS cannot attribute that magnitude) — it stops the
false PLATEAU and routes that regime to the --via-pool run.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(query): signal partial/warning on a real enrichment failure (not benign missing-table)

Tri-review P2: when a batched enrichment query (process/cohesion/content)
threw, it was caught + logged and the chunk's symbols silently fell back to
`definitions` with no signal — the caller could not tell "genuinely
standalone" from "enrichment failed".

Track an `enrichmentDegraded` flag in the three enrichment catch blocks and,
at response build, compose a single `warning` (FTS-missing and/or the
enrichment message, so neither overwrites the other) plus `partial: true`.
Both fields are omitted on the clean path, so the success-path response shape
is byte-identical.

Crucially, the flag fires ONLY for a REAL failure (timeout / lock / native
fault), NOT the benign "no Process/Community table" prepare error — a repo
analyzed without processes/communities is a normal config, and firing
`partial` on every such query would desensitize callers
(isBenignMissingTableError gates it).

New unit test test/unit/query-degraded-signal.test.ts (vi.mock pool-adapter,
override hybrid search to feed one matched symbol, route STEP_IN_PROCESS ->
throw): real failure -> warning+partial+symbol still returned; benign
missing-table -> no signal; FTS-missing + enrichment failure -> both messages
in one warning. Plus a success-path no-warning/no-partial assertion in the
calltool integration test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 08:46:46 +01:00
Gergő Magyar
7a45df0ab9
Merge branch 'main' into feat/cfg-layer-m1 2026-06-09 07:23:12 +01:00
Gergo Magyar
b51152c05d fix(ingestion): address tri-review + CFG-expert findings (#2081)
Corroborated findings from the tri-review (Codex + CE personas + GitNexus swarm
+ a CFG/program-analysis domain-expert lane). The OFF-path stays byte-identical;
all fixes are within the --pdg path or the benchmark.

- [Codex+CFG-expert] Exceptional `throw` edges now wire EVERY block in a try's
  protected region to the handler, not just the body ENTRY. A branched try body
  (`try { if (x) { use(t); } } catch`) previously left interior blocks with no
  path to `catch` — a taint false-negative into the handler for the M2 PDG pass.
- [Codex+CFG-expert] An unresolved labeled jump (a stacked outer label or a
  labeled non-loop block) now routes to the function EXIT instead of leaving a
  dangling sink — restores the single-exit invariant post-dominator/PDG
  computation needs.
- [Codex] computeChunkHash now folds pdgMaxFunctionLines/pdgMaxEdgesPerFunction
  into the chunk key (not just the pdg boolean), so a warm cache built under one
  cap is never served to a run with a different cap (#2038 class, extended to
  the budgets). Adds PdgCacheKey; boolean form kept for back-compat.
- [perf] visitTry resolves catch/finally in a single namedChild pass (the double
  `namedChildren.find` allocated two throwaway arrays).
- [adversarial] The bench `straight-line` scenario now runs at 2000->8000:
  output is a constant 4 blocks so disk/heap can't see the concat path, and at
  the old N a genuine O(n²) was masked by V8 cons-strings. Verified at the new N:
  the array-join impl ~1.0, a rope-optimized `+=` ~1.0 (correctly not flagged),
  a real O(n²) (re-join-every-append) ~3.8 — budget tightened 2.0->1.5.
- [adversarial+Codex] The bench `--check` now FAILS LOUDLY when run without
  `--expose-gc` instead of silently skipping the retained-heap gate.
- Doc: re-labeled the finally-bypass as a SOUNDNESS (false-negative) limitation
  tracked for M2, not mere "precision."

3 new regression tests (branched-try interior→handler, stacked-label→EXIT,
cap-fold key). 99 CFG tests pass; build clean; bench gate green.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 06:11:26 +00:00
azizur100389
3a4247ec36
feat(cpp): resolve inheritance-lattice member lookup (#2077)
* feat(cpp): resolve inheritance-lattice member lookup

* fix(cpp): harden inheritance-lattice lookup

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-09 06:53:11 +01:00
Gergo Magyar
ebfb62c1a9 perf(ingestion): add memory + disk growth gates to the CFG benchmark (#2081)
Extend bench/cfg/measure.mjs beyond wall-time to the two other scalability
dimensions that matter at kernel scale:

- DISK growth: utf8 byte size of the serialized cfgSideChannel — exactly what a
  --pdg run writes onto every ParsedFile shard (durable store + parse cache).
- MEMORY growth: retained JS heap of the cfgSideChannel payload, measured by the
  release-delta method (heap held minus heap after dropping it) — robust to
  pre-existing garbage and dead-stable run-to-run. Needs `node --expose-gc`;
  without it the heap metric is null and its gate is skipped (local runs still
  work). ci-tests.yml now passes --expose-gc so the heap gate runs in CI.

Both gated on linear scaling in baselines.json (disk_bytes_budget / heap_budget
1.2-1.3). Measured: disk ~1.0-1.04, retained heap ~0.87-1.0 — both linear
(~1KB/function each; ~2MB heap / 1.6MB disk at 2000 functions, --pdg only).
Bumped REPS 7->15 to stabilize the noisier time signal and widened the coarse
time tripwire budgets (the disk/heap gates carry the tight regression detection).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 05:28:17 +00:00
Gergő Magyar
e6f04fae7b
Merge branch 'main' into feat/cfg-layer-m1 2026-06-09 06:14:01 +01:00
dependabot[bot]
774cd4d568
chore(deps)(deps): bump @ladybugdb/core in /gitnexus (#2098) 2026-06-09 05:59:57 +01:00
Gergo Magyar
f427a6dff8 perf(ingestion): benchmark CFG construction + O(n) block-text accumulation (#2081)
Closes the M1 review's requires_verification perf gap ("no benchmark for
collectFunctionCfgs; a wall-time + cfgSideChannel byte-size regression gate
would catch the extendBlock concatenation before kernel scale").

- bench/cfg/measure.mjs (new): build-free tsx harness timing collectFunctionCfgs
  (parse once, reuse the tree) across three scaling scenarios — straight-line
  (extendBlock path), many-functions (collect walk), branchy (block/edge growth)
  — at 500→2000. Reports a wall-time scaling ratio AND a cfgSideChannel
  byte-size ratio, plus an order-independent sha256 over the emitted blocks/edges
  as the behavior gate. `--check` compares both ratios + the fingerprint against
  bench/cfg/baselines.json; mirrors the scope-capture / python-scope harnesses.
- .github/workflows/ci-tests.yml: run the gate on every test job (build-free,
  alongside the existing scope-capture guards) so an O(n^2) re-regression fails CI.
- cfg-builder.ts: structural fix for the one real hotspot the bench surfaced —
  accumulate basic-block text as fragments joined once in finish(), instead of
  concatenating onto a growing string per coalesced statement (O(n^2) → O(n)).
  Behavior-identical (the CFG fingerprint + the AC1 snapshot are unchanged).

Measured (post-fix): time ratios straight-line ~1.3, many-functions ~1.0,
branchy ~1.1 (all sub-quadratic; a true O(n^2) would be ~4.0). cfgSideChannel
bytes scale linearly (~1.0-1.04). 60 CFG tests green; build clean.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 04:19:06 +00:00
Gergő Magyar
4de4d205dd
fix(ingestion): lazy-load optional grammars so analyze never crashes when one is missing (#2091, #2093) (#2101) 2026-06-09 04:58:01 +01:00
Gergo Magyar
e3d4cb6a87 fix(review): apply ce-code-review autofix feedback (#2081)
Review (10 reviewers) confirmed OFF-path byte-identity (adversarial + golden)
and found defects all within the --pdg path. Fixes:

- P1 same-line BasicBlock id collision: add a start-column disambiguator to
  FunctionCfg + the id (`BasicBlock:<file>:<line>:<col>:<idx>`) so two functions
  sharing a start line no longer collide under first-writer-wins addNode.
- P1 worker crash-cascade: per-file try/catch around collectFunctionCfgs so a
  CFG-build throw cannot escape to the language-group catch and silently drop
  every remaining file in the group.
- P2 edge-cap drop now logs unconditionally (input.onWarn is validator-gated/
  silent in prod) — upholds the no-silent-truncation guarantee.
- P2 Array.isArray guard before the cfgSideChannel cast in run.ts.
- P2 maxFunctionLines default: worker applies DEFAULT_PDG_MAX_FUNCTION_LINES=2000
  when unset; caps forwarded through run-analyze AnalyzeOptions (closes the
  server-path drop).
- P3 README duplicate paragraph removed; `0`-vs-default docstrings corrected;
  CLI --pdg flag made language-neutral; reachableBlocks JSDoc corrected.
- Documented the break-through-finally + stacked-label CFG limitations.
- Tests: same-line id-collision regression, standalone throw→EXIT, dead-code-
  after-return, async/generator/method coverage, strengthened labeled-continue.

Refuted: the HTTP-500 getNodeQuery finding — M0 already shipped the BasicBlock
branch + name-floor (R12/web-safety handled).

CFG + analyze-config suites: 95 tests green; golden parity (AC4) byte-identical.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 20:18:02 +00:00
Gergo Magyar
c57bbb05a0 test(ingestion): drop unused helper in cfg-snapshot test (#2081)
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:55:05 +00:00
Gergo Magyar
d19b4ca639 test(ingestion): U7 — CFG acceptance fixtures, parity, end-to-end + docs (#2081)
Acceptance criteria for the M1 CFG layer:
- AC1: a 10-function TS fixture's CFG node/edge set matches a committed snapshot
  (cfg-snapshot.test.ts).
- AC2: every BasicBlock is reachable from its function ENTRY (property test over
  the emitted graph; the fixture has no dead code).
- AC3: hazard fixtures lock the classic-bug coverage — try/throw/finally
  post-domination + labeled break/continue resolution.
- AC4: the existing pipeline-graph-golden test stays byte-identical with --pdg
  off (verified; no UPDATE_GOLDEN), proving the opt-in adds zero default-run
  drift.
- End-to-end (pipeline-pdg.test.ts): runPipelineFromRepo({ pdg: true }) on a
  tiny repo emits BasicBlock nodes + CFG edges with both endpoints present —
  the true both-sinks proof (worker builds → store → scope-resolution emits);
  the default run emits zero.

Docs: CHANGELOG M1 entry, ARCHITECTURE "Optional CFG/PDG emission" subsection
(why emit is in-phase, not post-mro), README CFG language-support note.

Full CFG suite (U1–U7): 56 tests green.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:53:53 +00:00
Gergo Magyar
416bbcbbae feat(cli): U5 — --pdg opt-in plumbing (CLI + .gitnexusrc → both sinks) (#2081)
Expose the CFG/PDG substrate as an opt-in and thread it from CLI/.gitnexusrc to
the single source of truth (PipelineOptions.pdg), which fans out to BOTH sinks
already wired in U3/U4: the worker build gate (workerData.pdg) and the
scope-resolution emit gate. Off by default (R7).

- cli/index.ts: `--pdg` commander flag.
- cli/analyze.ts: AnalyzeOptions.pdg + pass `pdg` into runFullAnalysis options.
- cli/analyze-config.ts: KEY_SPECS `pdg` (boolean) so `.gitnexusrc { "pdg": true }`
  normalizes and a non-boolean value fails closed with GitNexusRcError.
- core/run-analyze.ts: AnalyzeOptions.pdg → runPipelineFromRepo({ pdg }).

(The internal PipelineOptions/WorkerPoolOptions/workerData fields + the
parse-cache key fold landed in U3/U4; this unit adds the user-facing surface.
The budget knobs stay at internal defaults for M1.)

Tests: analyze-config pdg normalization + non-boolean rejection; opt-in.test.ts
covers the CLI/file merge precedence and that pdg perturbs the chunk-dispatch
key. The full worker-build + main-emit round-trip is the U7 integration test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:43:10 +00:00
Gergo Magyar
d8b14cfa7f feat(ingestion): U4 — emit BasicBlock + CFG within scope-resolution (#2081)
Emit persisted BasicBlock nodes + CFG edges from each ParsedFile's worker-built
cfgSideChannel, INSIDE scope-resolution's Phase-4 graph emission — the last
point where the worker-built CFGs are loaded (emitParsedFiles carries the
channel; the disk store is cleared right after the orchestrator returns). This
is the architecture the doc-review corrected to: a standalone post-`mro` phase
(the issue's literal subtask) provably reads empty data (KTD1).

- cfg/emit.ts (new): pure emitFileCfgs(graph, cfgs, maxEdgesPerFunction, onWarn).
  BasicBlock id = `BasicBlock:<filePath>:<functionStartLine>:<blockIndex>`
  (KTD3 — funcStart disambiguates blocks across functions in one file; no
  `name` column). CFG edge = CodeRelation type 'CFG' with the edge KIND
  (seq/cond-true/…) in `reason` (kinds can't be their own edge type). Per-
  function edge cap stops at the cap and warns with the dropped count — no
  silent truncation (R6/KTD6).
- run.ts: pdg-gated emit pass over emitParsedFiles after emitPostResolutionEdges
  (store still live); RunScopeResolutionInput gains pdg + pdgMaxEdgesPerFunction.
- phase.ts: thread ctx.options.pdg / pdgMaxEdgesPerFunction into the call.
- pipeline.ts: PipelineOptions.pdgMaxEdgesPerFunction.

6 tests: node/edge shape (KTD3 id, no name, type='CFG', kind in reason),
cross-function id uniqueness, AC2 reachability-from-ENTRY property, the edge
cap's no-silent-truncation contract, and empty-input no-op. Flag-off
byte-identity + full runPipelineFromRepo round-trip land in U7. Build clean.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:37:48 +00:00
Gergo Magyar
15bb02abbc feat(ingestion): U3 — worker CFG build + cfgSideChannel + cache coherence (#2081)
Run the CFG visitor in the parse worker (where the AST lives), serialize the
per-function CFG onto a new ParsedFile.cfgSideChannel, and keep it coherent
across the disk-backed store and the warm/durable parse cache (R3, R4).

- gitnexus-shared parsed-file.ts: add `cfgSideChannel?: unknown` as a DISTINCT
  field from captureSideChannel (different producer/consumer/lifecycle; plain
  JSON data — blocks/edges deliberately lack the `nodeId` the store's interning
  reviver keys on, so no mis-interning).
- cfg/types.ts + visitors/typescript.ts: add CfgVisitor.isFunction so the worker
  enumerates functions (and applies the line budget) by a cheap node-type test.
- cfg/collect.ts (new): collectFunctionCfgs walks the tree, builds one CFG per
  function (nested included), applies maxFunctionLines (over-cap = skipped).
- language-provider.ts: add `cfgVisitor?: CfgVisitor<SyntaxNode>` hook;
  typescript.ts attaches it to both the TS and JS providers (shared grammar).
- parse-worker.ts: read pdg + pdgMaxFunctionLines from workerData (read once at
  init — the worker never sees PipelineOptions), gate the build, attach
  cfgSideChannel alongside captureSideChannel.
- parse-cache.ts: bump SCHEMA_BUMP 4→5 (ParsedFile shape changed) and fold the
  pdg flag into computeChunkHash so a pdg-off cached chunk is NOT reused on a
  --pdg run (the #2038-class warm-cache trap). Default path keeps its keys.
- worker-pool.ts + parse-impl.ts + pipeline.ts: thread pdg/pdgMaxFunctionLines
  PipelineOptions → WorkerPoolOptions → workerData, and into the chunk-hash key.

9 boundary tests: collect contract, JSON round-trip identity (no AST leakage),
the pdg cache-key guard, the line-cap skip, and the no-visitor gate. Full CFG
suite (U1+U2+U3) green; build clean.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:26:58 +00:00
Gergo Magyar
d33c69f799 feat(ingestion): U2 — TS/JS CFG visitor over tree-sitter AST (#2081)
Add the TS/JS CfgVisitor that walks a function's tree-sitter AST and drives
the U1 CfgBuilder to produce a serializable FunctionCfg. One visitor covers
both languages (shared grammar family).

Handles the classic CFG hazards explicitly (R2, R10):
- loops allocate a dedicated loop-exit block so `break` has a concrete target
  before the loop's successor is known; `continue`/back-edge close the loop
  (while, do-while, C-for with init-once + increment-as-continue-target,
  for-in, for-of)
- switch fallthrough falls out naturally: a non-breaking case yields exits we
  wire to the next case as `fallthrough`; a breaking case wires to the switch
  exit via ControlFlowContext
- try/catch/finally: normal completion AND exceptional flow both route through
  finally (post-domination); a conservative exceptional edge models that the
  protected region may raise to its handler (not just explicit `throw`)
- labeled break/continue resolve against the labeled loop's frame
- early return/throw wire to EXIT/handler and terminate their block

19 hazard tests (one per construct) + AC1 10-function fixture; all green.
No change to the committed U1 core or ControlFlowContext.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 19:16:48 +00:00
Gergo Magyar
6e0c1e1e7f feat(cfg): language-agnostic CFG construction core (#2081)
U1 of M1 (CFG layer). Plain JSON-serializable CFG data model (BasicBlockData/
CfgEdgeData/FunctionCfg — must survive the worker→main boundary + ParsedFile
store), a CfgBuilder accumulator (leaders→blocks→edges, synthetic ENTRY/EXIT,
idempotent edges), a ControlFlowContext (break/continue/switch + labeled-jump
target stacks), and a TraversalResult ({entry, dangling exits}). AST-agnostic
and unit-tested on the classic control-flow topologies (if/else, while back-edge,
mid-block return, labeled break/continue) the S2 spike validated; reachability
helper backs the R9 property test.
2026-06-08 18:36:40 +00:00
Gergő Magyar
f2c9e69792
feat(ingestion): M0 — taint/PDG substrate (schema + seams + spikes) (#2080) (#2092) 2026-06-08 18:56:10 +01:00
Copilot
689e6ef1f8
chore: Sync Claude plugin manifests with the 1.6.6 release (#2090)
* Initial plan

* fix: sync Claude plugin manifest versions

* test: fold manifest sync check into existing node suite

* chore(autofix): apply prettier + eslint fixes via /autofix command

* test: run manifest sync guard in always-on suite

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-06-08 16:50:09 +01:00
Gergő Magyar
2cf7e7fa88
chore: release v1.6.6 (#2075)
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Bump gitnexus 1.6.5 -> 1.6.6 and add the 1.6.6 CHANGELOG section
covering ~190 PRs merged since v1.6.5 (range v1.6.5..main).

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 09:44:28 +01:00
xianzuyang9-blip
1ca4f15267
fix: declare onnxruntime-common runtime dependency (#2074)
* Declare onnxruntime-common runtime dependency

* Declare onnxruntime-common runtime dependency

* Declare onnxruntime-common runtime dependency

* Declare onnxruntime-common runtime dependency

* Declare onnxruntime-common runtime dependency

* Remove package metadata unit test

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-08 08:44:05 +01:00
Gergő Magyar
df5ce1f49b
fix(ingestion): close remaining open language parsing-layer coverage gaps (#1919) (#2072)
* fix(c): skip computed #include MACRO instead of emitting a garbage import source (F5)

* fix(cpp): emit a Variable per name for structured-binding declarations (F9)

* fix(dart): extract static const/final class fields (F26)

* fix(dart): capture old-style function typedefs (F28)

* fix(dart): read real top-level variable shape instead of a dead type field (F29)

* fix(kotlin): capture callable references (F47)

* fix(kotlin): anchor infix-call capture to the operator only (F49)

* fix(kotlin): extract secondary constructors as members (F48)

* fix(kotlin): capture destructuring declarations (F51)

* fix(kotlin): index companion-object properties as fields (F52)

* test(kotlin): assert callable-reference coverage runs on the worker path (F47)

* fix(swift): extract protocol property requirements (F75)

* fix(swift): recognize enum_class_body as a method body node (F79)

* test(ingestion): rebaseline swift captures-golden + scope-capture fingerprints (#1919)

* fix(kotlin): attribute secondary-constructor body calls to the Constructor node (#1919 review CF1)

A Kotlin secondary constructor's body executes statements like a method body,
but the registry-primary scope-resolution path had no Function scope or
Constructor def for it. A call inside the body resolved its caller anchor up to
the enclosing Class scope, mis-attributing the CALLS edge to the class rather
than the Constructor.

Add `(secondary_constructor) @scope.function` to the Kotlin scope query so the
body becomes its own scope, and synthesize a `@declaration.constructor` (named
`constructor`, qualified `<Class>.constructor`, with parameter metadata) so the
scope owns a Constructor def that bridges to the structure-phase Constructor node.

Also add an arity-disambiguating lookup key for overloadable callables: two
same-name secondary constructors of different arity (e.g. a zero-arg vs a 2-arg)
share the qualified key whose first-write-wins assignment is source-order-
dependent — so a zero-arg overload could resolve to a sibling. The structure
node id encodes `#<arity>`; mirror that in the bridge keyspace and match by the
def's parameterCount. Same-arity overloads collapse onto one arity key exactly
as before, so no regression there.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(kotlin): do not own function-local property bindings under the enclosing class (#1919 review CF3)

Kotlin emits destructuring / loop bindings (`val (a,b) = pair`,
`for ((k,v) in m)`) as `@definition.property` to dodge the block-scope
local-symbol pruner. When such a binding sits inside a method body of a class,
the structure-phase owner walk found the enclosing class and emitted a spurious
HAS_PROPERTY edge (e.g. `C -> k`), treating a function-local as a class member.

Guard the Property owner resolution: if a function-like ancestor is reached
before any class container, the property is function-local and gets no owner
edge (it falls back to a File DEFINES edge). Language-agnostic — genuine class
fields sit directly in the class body with no intervening function, so they
keep their HAS_PROPERTY owner edge.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(kotlin): guard non-companion property isStatic=false (#1919 review CF4)

Add a field-extraction case for a plain non-companion class
`class C { val x: Int = 1 }` asserting the property `x` has isStatic=false,
guarding the `isInsideKotlinCompanion` walk against false-positives.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(kotlin): dedup type_identifier lookup in extractOwnerName (#1919 review CF5)

The `node.namedChildren.find(c => c.type === 'type_identifier')?.text` lookup was
duplicated across the companion and non-companion branches of the Kotlin
field-extractor's extractOwnerName. Hoist it into a single local, preserving the
existing behavior (anonymous companion falls back to "Companion"; other nodes
prefer the `name` field, else the type_identifier text, else undefined).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(dart): capture generic old-style function typedefs (#1919 review CF2)

* test(dart): guard multi-name field count and top-level-var labels (#1919 review CF4)

* docs(swift): correct isStatic comment re multi-modifier hasKeyword (#1919 review CF5)

* test(ingestion): rebaseline dart+kotlin scope-capture fingerprints after review remediation (#1919)

* fix(ingestion): correct CF3 owner-strip boundary set for accessor/init bodies and Dart signatures (#1919 review)

The CF3 property-ownership guard used FUNCTION_NODE_TYPES, which (a) includes
Dart bare signatures (function_signature/method_signature) — over-stripping
every Dart class getter/setter's HAS_PROPERTY owner — and (b) omits Kotlin
anonymous_initializer/getter/setter and Swift computed accessors — under-
stripping destructuring/locals inside init{} and accessor bodies, emitting
spurious Class->local HAS_PROPERTY edges. Introduces a guard-specific
LOCAL_SCOPE_BODY_NODE_TYPES set (signatures excluded, accessor/init bodies
included). Adds Dart accessor-ownership + Kotlin init/accessor destructuring
regression fixtures. Both confirmed on the worker pipeline; no cross-language
regression (1597 cross-language tests green).

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-08 08:09:43 +01:00
Gergő Magyar
3963c497dd
fix(parse): correct worker-pool docs drift + surface worker-side stack on crash (#2068) (#2070) 2026-06-08 07:20:12 +01:00
Gergő Magyar
4fc2ffa5d0
refactor(ingestion): delete shadow-mode parity harness (RING4-3, #944) (#2071)
Ring 4 retires the legacy call-resolution DAG. With the legacy resolver
gone (RING4-1 #942, RING4-2 #943), shadow mode has nothing to dual-run
against, so the remaining shadow-mode artifacts are dead code.

- Delete gitnexus-shared/src/scope-resolution/shadow/{diff,aggregate}.ts
  (pure parity comparison logic) and its gitnexus-shared barrel exports.
- Delete the static parity dashboard (gitnexus/shadow-parity-dashboard/),
  which also removes the last GITNEXUS_SHADOW_MODE reference in the repo.
- Delete the shadow-mode unit tests (gitnexus/test/unit/shadow/).
- Scrub stale doc comments referencing the shadow harness / parity
  dashboard / removed legacy run (csharp/php/python/typescript index.ts,
  evidence.ts, module-scope-index.ts).

Already removed by RING4-1/-2 (verified): the shadow harness source and
GITNEXUS_SHADOW_MODE env handling; no CI job published dashboard artifacts.

Historical parity records preserved per acceptance: the CHANGELOG entry
(#918, #923, #951, #972) and the ci.yml RING4-1 note remain. Last
documented parity state is that historical coverage — no live
.gitnexus/shadow-parity/ run data exists in-tree (runtime output only).

Closes #944.

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-07 20:06:42 +01:00
Abhigyan Patwari
f0c292f9e7
perf(ingestion): prune inert local value symbols (#2065) 2026-06-07 14:47:51 +01:00
Gergő Magyar
2dc0cc6398
fix(mcp): prevent sibling-clone repo ID collisions and correct generated MCP tool names (#2067) 2026-06-07 10:57:15 +01:00
dependabot[bot]
2b4d6e742b
chore(deps)(deps): bump @ladybugdb/core in /gitnexus (#2056)
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Bumps [@ladybugdb/core](https://github.com/LadybugDB/ladybug) from 0.16.1 to 0.17.0.
- [Release notes](https://github.com/LadybugDB/ladybug/releases)
- [Commits](https://github.com/LadybugDB/ladybug/compare/v0.16.1...v0.17.0)

---
updated-dependencies:
- dependency-name: "@ladybugdb/core"
  dependency-version: 0.17.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-07 06:31:45 +01:00
Sparsh
baca749e0b
fix(vue): F89 JSDoc fix, F90 dual-script merge, F92 lang plumbing (#1936) (#2050)
* fix(vue): F89 JSDoc fix, F90 dual-script merge, F92 lang plumbing (#1936)

* fix(vue): reviewer fixes — P1 lang routing, P2 lineOffset, P2/P3 pipeline tests

* fix(vue): add jsx to lang routing condition

* fix(vue): update F90/F92 fixtures and test assertions for CI

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-07 06:02:30 +01:00
azizur100389
9a40af3d79
fix(java): dedupe inherited RequestMapping prefixes (#2057) 2026-06-07 05:28:10 +01:00
Gergő Magyar
95f87fc12a
perf(ingestion): Linux-kernel-scale analysis — worker-pool parse + finalize O(n²) + scope-resolution memory wall (#1983) (#2038)
* fix(ingestion): reduce parse-phase memory for huge repos (#1983)

Stop retaining full parse-cache chunks in RAM alongside the merged graph,
slim on-disk shards, defer worker ParsedFile emission for scope-resolver
languages, and add GITNEXUS_DEBUG_HEAP probes for OOM diagnosis.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ingestion): address #2038 tri-review findings (parse-phase memory)

Resolves the confirmed review findings on PR #2038:

- P1: thread exportedTypeMap through the sequential parse path
  (processParsingSequential) so a no-worker run over a partially-warm
  cache no longer silently drops the sequential-miss files' exported
  types. Cache hits made exportedTypeMap.size > 0, suppressing the
  end-of-loop buildExportedTypeMapFromGraph rebuild, but the sequential
  path never populated the map. Regression test added (fails on the
  pre-fix tree, passes after) plus a fully-sequential differential oracle.
- P2: saveParseCache builds its on-disk index from hashes actually
  written/copied (writtenKeys), never a usedKeys hash whose shard write
  or copy was skipped — no more phantom index entries.
- P2: add a unit test asserting SCOPE_RESOLUTION_LANGUAGES stays in sync
  with SCOPE_RESOLVERS (asymmetric drift would lose a language's ParsedFile).
- Backfill cache coverage: loadParseCacheChunk missing/corrupt -> undefined,
  pruneCache onDiskKeys branch, slim preserves nodes, saveParseCache
  copy-evicted-shard round-trip.
- Cleanups: single-source heap-probe gating via isDebugHeapEnabled();
  hoist the per-chunk mkdir in persistParseCacheChunk behind a
  process-scoped Set; gate COBOL's unused worker-side ParsedFile
  extraction (graph nodes still come from cobolPhase) while keeping
  fileCount/progress unconditional.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(ingestion): remove dead worker-side ParsedFile extraction

After #2038 gated worker `ParsedFile` emission behind `!isScopeResolutionLanguage(language)`, and with all 16 SupportedLanguages registered in SCOPE_RESOLVERS, that gate was structurally always true — the worker already produced no ParsedFiles and scope-resolution re-extracts each file from source on the main thread (run.ts). Remove the now-dead machinery:

- Drop both worker `extractParsedFile` call-sites (tree-sitter processFileGroup + the standalone-provider branch) and the `result.parsedFiles.push`. The standalone branch keeps fileCount/onFileProcessed per file. `result.parsedFiles` stays declared but empty (field removal deferred).
- Remove the now-orphaned `scopeSourceKind` var + `ScopeCaptureSourceKind`/`extractParsedFile`/`isScopeResolutionLanguage` imports.
- Delete the consumerless `migrated-languages.ts` (isScopeResolutionLanguage + SCOPE_RESOLUTION_LANGUAGES) and its drift-guard test — parse-worker was their only importer. Also improves AGENTS.md "shared ingestion code must not name languages" compliance.

`extractParsedFile` and the scope-extractor-bridge stay (scope-resolution/run.ts + Vue resolver use them). Behavior-preserving: worker-sequential-parity passes before and after; tsc/eslint clean; no baseline/golden drift.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(ingestion): worker-pool-only parsing; remove sequential parser (#1983)

Completes the #1983 huge-repo parse-OOM effort by making the worker pool
GitNexus's sole parse path.

Parallel serialization (the perf core): workers serialize their ParsedFiles to
a disk store in parallel and stream them back to scope-resolution, so the main
thread no longer re-parses every file (the tree-sitter native-memory leak that
caused the OOM). Adds chunk merge-pipelining + work-proportional chunk sizing so
the pool stays saturated.

Remove the sequential parser: `--workers 0`, `GITNEXUS_WORKER_POOL_SIZE=0`, and
`skipWorkers` now hard-error (no silent degrade — #1741); the small-repo
threshold no longer selects an in-process path; pool creation stays lazy /
cache-miss-gated so warm all-hit runs never spawn workers.

Worker-path parity fixes — removing sequential surfaced two pre-existing gaps
that tiny-fixture tests had masked by running below the worker threshold, both
fixed by carrying per-file metadata as DATA across the worker boundary (never
re-parsing on the main thread, preserving the OOM fix):
  - C++: templateConstraints wired into worker node identity (SFINAE overload
    disambiguation) + ADL / inline-namespace capture side-channel serialized
    onto the ParsedFile.
  - Kotlin: companion-scope side-channel serialized the same way (companion /
    static dispatch).

Validation: tsc + build clean; full suite green (10,190 pass — the only
deterministic failures were the now-fixed C++/Kotlin worker-path gaps; the 2
remaining full-run failures are pre-existing load flakiness, green in
isolation); cpp-pipeline benchmark stays linear on a 1-worker pool.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ingestion): wire C static-linkage side-channel + ADL O(1) collect + tri-review cleanups (#1983)

Follow-up to the worker-pool-only refactor, from a tri-review of the parse path.

- C static-linkage side-channel (P1): cProvider had no collect/applyCaptureSideChannel,
  so on the now-sole worker path C `static` file-local marks were lost across the worker
  boundary -> false cross-file CALLS edges + over-broad #include wildcard visibility on
  every C analysis (the Linux kernel is C). Mirror the C++/Kotlin wiring: serialize
  `staticNames` per file onto ParsedFile.captureSideChannel and restore it on the main
  thread (no re-parse). + a worker-path regression test (the existing c-static-isolation
  fixture passed vacuously — its collision resolves via #include before the global
  free-call fallback ever consults static-linkage).

- captureSideChannel `kind` discriminant: add `kind:'cpp'`/`kind:'c'` tags + guards
  (Kotlin already had one) now that C/C++/Kotlin share the single generic field.

- Perf: collectCppAdlSideChannel scanned the whole argInfoBySite/noAdlSites maps per file
  (O(F^2) per sub-batch, ~100M parseSiteKey calls at kernel scale). Add per-filePath
  lockstep indexes -> O(1) collect; serialized snapshot byte-identical.

- Cleanups: inline the one-line processParsingWithWorkers wrapper into processParsing;
  drop the always-empty WorkerExtractedData.calls/assignments/constructorBindings fields;
  remove the voided astCache param from processParsing; refresh stale "sequential
  fallback" JSDoc.

Validation: tsc + build clean; cpp 297/297, c 8/8 (incl. the new worker-path
static-linkage guard), typescript + parsedfile-store green; cpp ADL benchmark stays linear.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(scope-resolution): index C/C++ #include resolution in finalize (O(n²)→O(n))

Kernel-scale C/C++ analysis ground in finalizeScopeModel because three
per-#include operations each did a full O(F) scan with no index — the
finalize O(n²) that surfaced once the #1983 parse-phase OOM was fixed:

- expand{C,Cpp}WildcardNames: parsedFiles.find() per wildcard edge → O(R·F)
- resolveImportTarget: new Set(allFilePaths) rebuilt per #include
- resolveCImportTarget: suffix-match scanned all workspace paths

Each is replaced with a WeakMap-per-pass index keyed on the stable
parsedFiles/allFilePaths references that scope-resolution run.ts passes
once per pass:

- Map<ScopeId,ParsedFile> for wildcard expansion (c/static-linkage.ts +
  cpp/file-local-linkage.ts)
- memoized augmented header set (c/scope-resolver.ts + cpp/scope-resolver.ts)
- basename-bucketed suffix index in resolveCImportTarget (c/import-target.ts),
  shared by C and C++ since resolveCppImportTarget delegates to it

Collapses the C/C++ finalize from O(R·F) to O(R+F). Pure-perf, byte-identical
edge output: 962 targeted tests green (490 C + 472 C/C++ scope-resolution);
the basename index preserves the exact endsWith('/'+target) match and the
fewest-path-components-then-lexicographic tie-break.

The kernel's ~25-30k .h headers are classified C++, so both providers must
be fixed. Proven on the Linux kernel: the C finalize completed
(sr-post-finalize lang=c → sr-end lang=c), which the pre-fix run never
reached in 16+ min of grinding.

Build-independent follow-ups (separate from this finalize fix), documented
for later: emitFreeCallFallback same-name buckets (emit phase),
buildGraphNodeLookup + precount global setup, the ParsedFile store-load,
the dart/go/ruby expand-wildcards .find siblings, and the ~26GB
scope-resolution memory floor (full kernel completion needs >~40GB RAM).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(bench): regenerate C scope-capture baseline for the #1983 c-static-linkage-worker fixture

bench/scope-capture/measure.mjs fingerprints emitCScopeCaptures over the
lang-resolution/c-* fixture corpus. The #1983 PR added the
c-static-linkage-worker fixture (caller.c/lib.c/lib.h/local.c — the
worker-path static-linkage side-channel test) but did not regenerate the C
baseline, so `--check` has been red on this branch (main, lacking the
fixture, still matches 0de009b).

Pure fixture-corpus drift — no c/captures.ts or query change branch-vs-main,
existing fixtures' captures byte-identical (c-captures.test.ts 45/45),
scaling stays linear (~0.97). Regenerated: 0de009b -> 39f3a83. Bench now
PASS (14 languages). Unrelated to the finalize O(n²) fix.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(scope-resolution): lower kernel-scale resident memory floor + setup cost

Reduce the scope-resolution resident-memory floor and setup throughput on
huge repos (Linux kernel), the wall that remains after #1983 (parse OOM) and
the finalize O(n^2) fix (b71c77b8). Five units; all preserve byte-identical
edge output (C fixture 177n/255e + c/cpp/cross-file/php/static-linkage suites
green, 619 tests).

U1 (src/cli/analyze.ts): RAM-aware auto heap-cap. Replace the hardcoded
16384MB cap with computeHeapCapMb = max(16384, floor(0.75*effectiveRAM)),
where effectiveRAM = min(os.totalmem(), process.constrainedMemory()) with the
unconstrained-sentinel guard. Add --max-semi-space-size=128 on the respawn.
A user-supplied NODE_OPTIONS heap still wins (no re-exec). Verified: 23973MB
on a 31964MB box, 16384 floor on small machines, cgroup-aware, sentinel safe.

U2 (src/storage/parsedfile-store.ts, .../pipeline/phase.ts): export forceGc()
and call it at the per-language eviction boundary, so a finished language's
ParsedFiles are reclaimed before the next language's store-load instead of
collected lazily under the next pass's allocation pressure (which at cap>=RAM
degrades into swap-thrash). Measured on a real drivers/net/ethernet run:
C 2113->894MB and C++ 1754->1057MB reclaimed at the boundary (no fragmentation
defeat). Answers the plan's Open Question 1.

U3 (src/storage/parsedfile-store.ts): intern def objects by nodeId in the load
reviver so a SymbolDefinition's three serialized copies (localDefs /
scope.ownedDefs / scope.bindings[].def) collapse to one shared object on load.
Per-shard def pool (a def's copies are shard-local). Measured ~42% off the
def-object retained heap (3->1; 1.8M->600k distinct objects on 600k defs).

U4 (.../passes/free-call-fallback.ts): memoize pickUniqueGlobalCallable's
post-filter candidate list per (name, callerFilePath), only when no per-caller
visibility filter applies (the list is then a pure function of name+file), so
repeated free calls of one name from a file reuse the same-name-bucket scan
instead of re-walking a potentially huge bucket per site. The cached array is
read-only-consumed by the .filter()-based arity/overload narrowers. Exported
pickUniqueGlobalCallable + buildGlobalCallableIndex and added an equivalence
test (memoized == un-memoized reference for every (name, file, arity),
including warm-cache repeats and cross-file file-local exclusion).

U5 (.../pipeline/phase.ts): replace the O(L*F) per-language precount + repeated
scannedFiles.filter() with a single O(F) partition-by-language pass; bracket
buildGraphNodeLookup with scope-setup-nodeLookup heap probes so the long setup
is no longer silent.

Plan: docs/plans/2026-06-06-001-perf-kernel-scope-resolution-memory-plan.md
(U6 out-of-core global index deferred). Note: the kernel's full C++ pass floor
(~20k headers + the 8.8GB graph) likely still exceeds 24GB by itself, which is
why U6 remains the only unit that clears the wall.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(test): match OOM-guidance e2e assertions to the U1 reworded hint

The analyze-heap-oom-e2e real-child-OOM test still asserted the pre-U1
wording ('...out of memory.' + a hardcoded 24576 cap). U1 reworded the hint
to mention the auto heap-cap and use a <MB> placeholder, so the three
toContain substrings no longer matched (the assertion at line 62 failed on
all platforms). Update them to the current message. The unit twin
(analyze-heap-respawn) was already updated in 85bfc216; this integration
test was missed by the targeted local run.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(lbug): U6a — deterministic id-sorted graph output behind GITNEXUS_SORT_GRAPH_OUTPUT

First increment of U6 (out-of-core scope-resolution). Adds an optional
deterministic ordering of node + relationship CSV rows by their unique graph
id, behind GITNEXUS_SORT_GRAPH_OUTPUT (default OFF = today's graph-insertion
order, byte-identical — the iterator is returned untouched). With the flag ON
the CSV becomes a pure function of the node/edge SET rather than of emit order.

This is the structural enabler for the windowed/out-of-core resolve (U6b-U6d):
csv-generator.ts:518 currently iterates graph.iterRelationships() in insertion
order with NO terminal sort, so any deviation from parsedFiles-order emit would
change bytes. With U6a on, a windowed emit need only reproduce the same edge
SET, not the global insertion order — removing the single largest byte-identical
hazard from every later windowing step.

Verified: default off keeps the existing csv-pipeline suite byte-identical; on,
node rows are id-sorted and output is independent of graph insertion order
(set-build) with the same node/edge set.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(storage): U6d foundation — disk-backed scope store + lazy ScopeTree

Adds scope-index-store.ts: persistScopeShards (per-file scope shards via the
proven mapReplacer + def-interning reviver) + DiskBackedScopeTree, a lazy
ScopeTree that serves getScope from a bounded LRU of decoded shards plus a small
resident skeleton (scopeId -> {shard, childIds, parent}). Exports
makeInterningReviver from parsedfile-store for reuse.

This is the contained, highest-risk mechanism of U6d (out-of-core scope
resolution): the emit passes reach the heavy per-Scope binding payload
(~17-20GB on the kernel) ONLY through scopeTree.getScope (a point lookup) and
getChildren — they never read parsed.scopes directly — so moving that payload to
disk behind getScope is transparent. Every consumer reads a Scope BY VALUE, so a
value-faithful disk round-trip is byte-identical to resolution.

Proven in isolation: DiskBackedScopeTree is value-identical to buildScopeTree
for getScope/getChildren/getParent/getAncestors/has/size across multiple files
and after LRU eviction, and preserves the def-identity collapse (ownedDefs[i]
=== binding.def). Nothing wires it yet (the resolution-pipeline integration is
the next increment) — zero production impact; default off.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(scope-resolution): U6d integration — seal scopeTree to disk before emit (GITNEXUS_DISK_SCOPE_INDEX)

Wires the U6d out-of-core scope index into the live pipeline behind
GITNEXUS_DISK_SCOPE_INDEX (default OFF = byte-identical). When on:

- finalize-orchestrator builds a TransitionalScopeTree (validated, fully
  resident) instead of buildScopeTree, so finalize/propagate/resolve are
  unchanged.
- After resolve, before emit, run.ts seals it: persists the scopes to a
  file-sharded scope-index-store, swaps the model's scopeTree to disk-backed
  serving from the inside (the frozen bundle can't be reassigned, but the
  wrapper nulls its own resident backing), and drops the heavy Scope.bindings
  payload from all THREE holders — the model's tree (seal), the caller's
  preExtractedParsedFiles, and run.ts's own parsedFiles (scope-stripped copies
  for emit). Emit reads scopes only via scopeTree.getScope (a point lookup,
  now disk-backed + LRU) — verified it never reads parsed.scopes.

Purpose: lower the per-language resident PEAK (kernel C pass ~20→~12 GB by
moving the ~8-9 GB scope payload to disk) so the analysis fits on smaller-RAM
machines. At >=24 GB the full kernel already fits with U1-U5 (U2's 8.7 GB
inter-language forceGc reclaim keeps each pass under cap) — empirically
confirmed — so this is the sub-24 GB lever, not needed at 24 GB.

Byte-identical evidence: DiskBackedScopeTree/TransitionalScopeTree return
value-identical scopes vs buildScopeTree (getScope/getChildren/getParent/
getAncestors, across files + after LRU eviction + post-seal); emit reads only
getScope + referenceSites; flag-off (394 tests) and flag-on-resident (91 tests)
resolver suites stay green; an end-to-end A/B on a 212-file C+cpp+rust subset
produced identical 17,444 nodes / 31,343 edges with the seal firing per language
(c: 410→141 MB reclaimed). Kernel-scale peak-drop measurement pending the
in-flight verdict run freeing memory.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(scope-resolution): U6d — id-back workspaceIndex so the disk seal can reclaim scopes

The kernel run revealed the contained scopeTree seal didn't lower the heap:
WorkspaceResolutionIndex held Scope OBJECTS (classScopeByDefId / moduleScopeByFile),
built from every ParsedFile and live through emit, so the ~28k module + class
scopes stayed pinned past the seal (sr-seal-pre 17,583 -> sr-seal-post 17,771 MB,
no drop). It was the sole residual Scope-object holder (SemanticModel holds none).

Fix: classScopeByDefId / moduleScopeByFile become id-backed ScopeByKeyView
instances — a ReadonlyMap<K, Scope> facade over a K->ScopeId map + the scopeTree,
whose .get fetches via scopeTree.getScope(id). The index now pins only ids, so
once the tree seals to disk the scopes become collectible. Byte-identical: the
view returns the same Scope the resident tree holds (or a value-identical revived
one in disk mode), and iteration keeps the old insertion order. buildWorkspace
ResolutionIndex takes an optional scopeTree (live pipeline passes it); without it
(unit tests) the legacy direct Scope-object maps are returned unchanged.

Verified byte-identical: 733 tests across workspace-index / imported-return-types
/ c / cpp / cross-file / go / java. Kernel peak-drop re-measurement to follow.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* perf(scope-resolution): U6d — precompute exportedCallableByName (fix disk-getScope thrash)

The workspaceIndex id-backing freed the kernel scopes but exposed a throughput
collapse: findExportedDefByName's workspace fallback (walkers.ts:1019) scanned
EVERY module scope's bindings per unresolved free call, and under the U6d
disk-backed scopeTree each module-scope access faulted a shard in from disk —
lib ON went ~1min -> ~7.5min.

Fix: precompute the fallback result once into
WorkspaceResolutionIndex.exportedCallableByName (simpleName -> first module-local
callable def, first-file-wins — the exact semantics the scan returned), built
from the resident module-scope bindings at index-build time. findExportedDefByName
now does an O(1) lookup with zero disk reads.

Result: lib ON ~7.5min -> 21s (cache-warm), byte-identical 17,444/31,343; 758
tests green across workspace-index + c/cpp/cross-file/go/python.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs: rename cryptic U-unit codes to descriptive names in comments

The plan-unit shorthand (U3/U4/U6a/U6d/...) was meaningless in the code.
Renamed in comments + test descriptions (no behavior change, byte-identical):
  out-of-core scope index   (was U6)
  deterministic output      (was U6a)
  disk-backed scope seal    (was U6d)
  def-object interning      (was U3)
  free-call candidate cache (was U4)
Also renamed throughout the PR title/summary. Pushed commit messages keep
their original U-codes as historical record.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ingestion): durable ParsedFile shards for warm-cache coverage (#2038)

On a warm re-analyze where every chunk is a parse-cache HIT, no parse worker
runs, the run-scoped ParsedFile store is cleared at parse start, and the cached
ParseWorkerResult carries no ParsedFiles (the worker writes them to the store
and empties them from the message). Scope-resolution then found an empty store
and fell back to main-thread extractParsedFile — re-opening the #1983
tree-sitter native-leak OOM the disk store closes (abhigyanpatwari review on
parse-cache.ts).

Fix: workers ALSO write their ParsedFiles to a durable, content-addressed store
(parsedfile-cache/) keyed by chunk hash, mirroring the parse cache's lifecycle
(version-gated by PARSE_CACHE_VERSION, pruned in lockstep to the surviving
keys). On a warm hit the chunk's durable shards are byte-COPIED into the
run-scoped store (no re-parse, no re-serialize -> byte-identical), so
scope-resolution streams them exactly as on a cold run. A coherence gate
re-dispatches the worker whenever a cached chunk's durable shards are missing
(migration / pruned / version-stale) -- never the main-thread extract.

- worker-pool/parse-worker: thread chunkHash through dispatch->job->flush
  (incl. split/requeue) so the worker tags its durable shard by content
- parsedfile-store: durable persist / restore / index / prune API (sibling
  dir, never cleared per run); content-addressing makes stale reuse impossible
- parse-impl: load durable index, gate the cache hit on durable coverage,
  restore on hit, dispatch chunkHash on miss
- run-analyze: prune+save the durable store to the parse cache's surviving keys
- saveParseCache returns its written keys (the durable keepKeys)

Verified on linux/lib: warm preExtractedHits = full coverage (520/207/1, zero
main-thread re-parse), byte-identical cold==warm (17,456n/31,353e), warm 8.5x
faster. New two-run + mixed-mode + coherence-gate regression test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ingestion): clear stale scope-index-store shards on each seal (#2038)

The disk-backed scope index writes sequential s<n>.json shards into a shared
<storagePath>/scope-index-store/ dir, with the index resetting per
persistScopeShards call. A seal that writes fewer shards than a previous one
(a later language with fewer files, or a re-run of a shrunken repo) left stale
tail shards on disk indefinitely -- never read by the disk-backed tree, but
multi-GB on kernel-scale repos.

Add clearScopeIndexStore() and clear at the start of persistScopeShards: the
previously sealed language has finished emit and been released before the next
seal runs, so its DiskBackedScopeTree never reads those shards again. Unit
tests: a stale prior-run shard is removed, a fewer-files re-seal leaves no tail
shards, and the helper is idempotent.

Addresses abhigyanpatwari review on run.ts (disk hygiene for the
GITNEXUS_DISK_SCOPE_INDEX path).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 22:46:34 +01:00
evolution
3b43eb8b47
fix(go): capture multi-name declarations (#2032)
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2026-06-06 04:47:17 +01:00
Sparsh
bb3642ad5f
fix(rust): F70 — replace struct_expression name:(_) with three specific patterns (#2051)
* fix(rust): F70 — replace struct_expression name:(_) with 3 specific patterns

* fix(rust): F70 — cover scoped+turbofish struct literals (foo::Bar::<T> {})

The three patterns enumerate struct_expression.name as type_identifier /
scoped_type_identifier / generic_type_with_turbofish, but
generic_type_with_turbofish.type can itself be a scoped_identifier
(e.g. foo::Bar::<i32> {}), which the turbofish pattern — requiring
type:(type_identifier) — did not match. That dropped the constructor
reference entirely (verified: emitRustScopeCaptures returns 0 ctors for
foo::Bar::<i32> {} and a:🅱️:Bar::<i32> {}).

Add a fourth pattern that captures the trailing identifier of the scoped
turbofish path (scoped_identifier.name is an identifier, not a
type_identifier), and correct the comment that claimed all cases were
covered.

Strengthen rust-f70.test.ts: assert exactly one constructor per case, add
negative assertions guarding against the old full-path capture, and add
the scoped+turbofish and crate:: cases.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar@icloud.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-05 17:46:07 +01:00
Anton Fedotov
782f70cc07
feat(wiki): add opencode local provider (#2039)
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* feat(wiki): add opencode local provider

* style(wiki): format local cli client

* fix(wiki): harden opencode event parsing

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-06-05 09:24:00 +01:00
jwcrystal
22304cd4a4
fix(mcp): prevent orphan processes by handling stdin close/end and startup race condition (#2049)
* fix(mcp): prevent orphan processes by handling stdin close/end and startup race condition

Three gaps in stdin EOF handling:

1. Startup race: parent can die before `process.stdin.on("end", ...)` is
   registered, so the event is missed entirely.
2. Missing "close" event: when pipe is forcibly closed (parent SIGKILL),
   "close" fires without "end" on some platforms.
3. Transport layer did not propagate stdin termination to its onclose
   callback.

Fixes:
- Check readableEnded/destroyed in start() before registering listeners.
- Register stdin end+close listeners in CompatibleStdioServerTransport.
- Add _closed guard for idempotent close().
- Throw if start() is called after close().
- Add process.stdin.on("close") in server.ts alongside existing handlers.
- Add 5 regression tests.

* fix(mcp): register stdin shutdown before server connect
2026-06-05 08:36:28 +01:00