Commit graph

2157 commits

Author SHA1 Message Date
Gergő Magyar
649be2c482
Merge branch 'main' into codex/embedding-checkpoint-3456 2026-10-03 17:55:00 +01:00
Gergő Magyar
c51bad71fa
docs(search): explain model-specific vector cutoff tuning (U1) (#3462) 2026-10-03 15:22:34 +00:00
azizur100389
07b5c27045 fix(embeddings): defer staged checkpoint count until publication 2026-10-03 12:09:27 +01:00
Abhishek B R
a47cd17f27
fix(config): honor nested .gitignore files during repository walks (#3440) 2026-10-03 09:55:47 +00:00
articultur
d1971cf953
fix(communities): omit memberships for filtered singleton communities (#3447) 2026-10-03 08:25:35 +00:00
Ankit Verma
4f298d0ac0
fix(staleness): detect rollback with one Git query (#3445) 2026-10-03 07:42:26 +00:00
articultur
668fac7635
fix(search): report partially missing FTS indexes in query results (#3448) 2026-10-03 07:36:27 +01:00
Gergő Magyar
f99dde8aa3
fix(mcp): discover positional SDK tool registrations (#3450)
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2026-10-02 22:57:23 +00:00
azizur100389
a8f18f00b9
fix(swift): avoid false calls for injected closure properties (#3434) 2026-10-02 23:31:14 +01:00
dependabot[bot]
64fd67388f
chore(deps)(deps): bump fast-xml-parser in /gitnexus (#3454) 2026-10-02 22:47:30 +01:00
Gergő Magyar
dad3b8f6f2
fix(mcp): reject invalid symbol identities before graph reads (#3451) 2026-10-02 21:39:31 +01:00
Gergő Magyar
412446408d
fix(index): guard graph integrity and fail closed on incomplete risk (#3442) 2026-10-02 15:34:26 +01:00
dependabot[bot]
ce79caaf86
chore(deps): bump the uv group across 1 directory with 3 updates (#3443)
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2026-10-01 22:55:13 +03:00
Gergő Magyar
702eb9326a
chore(deps): consolidate pending dependency upgrades (#3441) 2026-10-01 19:16:12 +03:00
dependabot[bot]
74a1af71d4
chore(deps)(deps-dev): bump @types/node in /gitnexus (#3420) 2026-10-01 10:36:42 +00:00
dependabot[bot]
57bf8ee823
chore(deps)(deps): bump smol-toml from 1.8.0 to 1.9.0 in /gitnexus (#3419) 2026-10-01 11:02:29 +01:00
Gergő Magyar
e42122a0f6
feat(go): index gin/echo routes and report them in impact (#3402) (#3417) 2026-10-01 10:22:45 +01:00
azizur100389
acb65b95b6
fix(fastapi): propagate package router mount prefixes (#3408)
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* fix(fastapi): carry package router mount prefixes to child routes

* fix(fastapi): address review feedback on nested router prefixes (#3408)

- Skip unprefixed includes in the parse-impl legacy loop so a bare
  include_router in another file no longer shadows the real prefix.
- Union exact-file prefixes with legacy long/short prefixes via a shared
  mergeMountPrefixes helper in both ingestion and the group extractor.
- Join the parent APIRouter(prefix=...) between the mount prefix and the
  child include prefix.
- Resolve the group layer over every repo path (empty files included) so
  absolute-import ambiguity matches ingestion.
- Memoize (file, prefix) frames so diamond-shaped include graphs stay
  linear; drop the stack.pop() non-null assertion.
- Accept extra keyword arguments and a trailing comma in unprefixed
  include_router calls without double-firing on prefix= calls.
- Document that pass-through is limited to a host named `router`.
- Bump parse-cache SCHEMA_BUMP to 123 for the new capture fields.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(fastapi): seed prefix propagation from bare router mounts (#3408)

- A router mounted without a prefix now seeds traversal with an empty
  prefix (only when no prefixed mount targets the same file), so its own
  APIRouter(prefix=...) reaches unprefixed children on both surfaces.
- An all-empty chain records nothing and leaves the child on its legacy
  fallback.
- The bare-mount integration test no longer asserts that the test app's
  unprefixed mount is absent; it pins only that the real prefix survives.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(fastapi): capture include prefixes after nested-call arguments (#3408)

- Let the Shape A/B and unprefixed include_router patterns step over one
  level of nested calls such as dependencies=[Depends(auth)], so a
  prefix= written after them is captured by the worker (the group
  layer's tree-sitter patterns already handled this shape).
- Replace the unit test that pinned the dropped prefix with one that
  pins the captured prefixes and the unprefixed Depends-only edge; add a
  group-layer parity test.
- Correct the diamond test comment to 2^39 root-to-leaf paths.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-29 14:49:44 +01:00
Gergő Magyar
aa0f41e853
fix(python): model restoring helper calls in decorator identity (#3415)
* fix(python): model restoring helper calls in decorator identity (#3414)

A bare module-level call to a same-file helper whose every global
binding of a descriptor name is an unconditional del or builtins import
now restores the builtin at the call site, matching CPython. A nonlocal
rebind nested in the enclosing function now shadows an owned builtins
import, closing a false builtin. Unprovable call orders stay fail-closed
and are pinned against CPython 3.11.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(review): apply review findings

Close three false-builtin paths the review found: a match-pattern
capture now counts as a binding (at any scope, including inside a
restoring helper), a call before the helper's def no longer counts as a
restore, and the helper-name uniqueness check sees match captures.
Pin the helper rejections (conditional restore, async, early and nested
return, wildcard import) against CPython 3.11.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(cache): bump parse-cache schema to v122 for #3414

Python decorator identity verdicts changed, so warm v121 ParsedFiles
would replay stale receiver bindings.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): require an argument-free call to a helper with no required parameters

A call that fails to bind the helper's parameters raises TypeError
before the body runs, so it proves no restore. Keep such calls
fail-closed.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): count only real captures and module bindings for decorator identity

Match value patterns, class names and keyword keys read a name rather
than capture it, so they no longer shadow a builtin descriptor. A local
of the same name as a restoring helper no longer disqualifies the
module-level helper; only a module binding or a global rebind does.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(python): state the fail-closed contract of the descriptor identity table

`false` means the resolver does not prove the builtin, not that CPython
shadows it. Cases where CPython keeps the builtin but the resolver fails
closed carry a comment saying so.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-29 12:37:27 +01:00
dependabot[bot]
c2fab0a8d2
chore(deps)(deps): bump @modelcontextprotocol/sdk in /gitnexus (#3410)
Bumps [@modelcontextprotocol/sdk](https://github.com/modelcontextprotocol/typescript-sdk) from 1.30.0 to 1.30.1.
- [Release notes](https://github.com/modelcontextprotocol/typescript-sdk/releases)
- [Commits](https://github.com/modelcontextprotocol/typescript-sdk/compare/1.30.0...1.30.1)

---
updated-dependencies:
- dependency-name: "@modelcontextprotocol/sdk"
  dependency-version: 1.30.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-29 09:11:28 +00:00
Gergő Magyar
821ffb2fcb
fix(python): resolve decorator identity like CPython (#3411)
* fix(python): resolve decorator identity like CPython

Decorator identity was decided by two different predicates. One read
the raw decorator text, so a trailing comment such as
`@staticmethod  # type: ignore` hid the builtin and turned an explicit
first parameter into a fabricated receiver. The other trusted any
`staticmethod` spelling, including a module-level rebinding and a
`staticmethod(classmethod(f))` stack, which CPython cannot call.

Read the decorator expression node only, and recognize a bare builtin
descriptor only when the file does not rebind that name. Publish subtype
capacity only for a plain function or a single builtin staticmethod or
classmethod wrapper. Drop a no-op coverage guard, move the implicit
classmethod comment next to the code it describes, and bump the parse
cache to v121.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): shadow builtin descriptors only by visible bindings

The whole-file identifier scan counted plain reads (`staticmethod(f)`),
`from builtins import staticmethod`, and bindings that run after the
decorator as rebindings. CPython evaluates a class-body decorator with
LOAD_NAME when the `def` runs, so none of those change which object the
decorator names. Methods decorated with the real builtin lost their
subtype call shape, and static methods lost their first parameter in
arity metadata.

Move decorator identity into builtin-descriptors.ts and count only
binding occurrences (assignment and loop targets, walrus, def/class,
parameters, import aliases, except/with/match captures, del, type
parameters, and wildcard imports) that are visible where the decorator
runs: the class body or module before the definition, a repeating
enclosing loop, any binding in an enclosing function, and any
global/nonlocal rebind.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): model global and del like CPython's symbol table

`global x` and `nonlocal x` bind nothing; they redirect the declaring
function's own bindings of `x` to an outer scope. A bare declaration
was treated as an unconditional rebinding, so `@staticmethod` anywhere
in the file lost builtin recognition.

A module- or class-level `del` restores the outer lookup rather than
binding the name. Treat an unconditional `del` that runs after a
binding and before the decorator as undoing that binding. A `del`
inside control flow may not run, and a `del` inside a function still
makes the name local there.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): order global rebinds and honor builtins re-exports

A function that declares `global staticmethod` and assigns it rebinds
the module name only when called, and it cannot be called before the
top-level statement that defines it runs. Treat such a rebind as
visible only when that statement precedes the decorator, or when the
decorator sits in a deferred class body. `nonlocal` rebinds stay
visible anywhere in the enclosing function.

`from builtins import staticmethod as staticmethod` binds the builtin
to its own name, so it no longer counts as shadowing.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(python): scope the descriptor-identity CPython claim

The wildcard-import case expects the fail-closed resolver verdict, not a
CPython outcome, because the imported module's exports are unknown.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): resolve descriptor names as LOAD_NAME does

Model each binding by its effect on the namespace (Language Reference
4.2.1): an import that binds the `builtins` object itself (plain, aliased
to the same name, or `from builtins import *`) restores the builtin, a
module- or class-level `del` unbinds so lookup falls through, and any
other binding shadows. Resolve the decorator like LOAD_NAME (4.2.2):
the class namespace, then module globals, then builtins, each as it
stands when the `def` runs.

A restoring effect counts only as an unconditional simple statement that
runs before the decorator, so an import or `del` under `if`/`try` or a
loop stays fail-closed. A helper's `global` delete depends on whether
the helper is called, which the resolver does not model, so it keeps the
override.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* refactor(python): simplify decorator descriptor lookup

Derive the descriptor type and name set from one `as const` list,
replace indexed non-null assertions with destructuring, build the scope
chain without an assertion, and skip the enclosing-function owner lookup
when the decorator has no enclosing function. Key the stacked-decorator
verdicts by case name so a failure names its case.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(python): resolve enclosing-function and deferred descriptor lookups

A class body reads a free name from the innermost enclosing function that
binds it (Language Reference 4.2.2). Evaluate that function's namespace
the same way as the class and module ones, so an unconditional
`from builtins import staticmethod` there resolves to the builtin. Any
other binding still shadows, including a local assigned only after the
class, which raises NameError rather than falling back to the builtin.

A class body inside a function runs whenever that function is called,
which can be any time after its top-level statement starts. Read module
state at that statement instead of after the whole module, so an earlier
`del` restores the builtin, and treat any later module override as
possibly visible.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-29 08:12:52 +00:00
Gergő Magyar
0bcddec8e6
fix(python): keep uncertain decorated receivers unresolved (#3405)
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* fix(python): suppress uncertain decorated receivers

* fix(ci): keep uncertain Python receivers out of method arity

Unrecognized decorators now leave the receiver kind unproven, but the
first parameter is still the implicit receiver slot for ordinary bound
calls. Method extraction stopped stripping it, so decorated methods
reported one extra parameter and shifted capture arity metadata.

Share the uncertain-receiver classification between type-binding
synthesis and parameter extraction, then refresh the Python capture
golden and benchmark fingerprint for the intended capture change.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-28 19:22:10 +00:00
azizur100389
4569910c79
fix(process): exclude Dart test entry points (#3407)
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-28 18:29:26 +00:00
Gergő Magyar
0ef3f28d0e
fix(python): avoid receiverless subtype targets
Fixes #3396
2026-09-28 17:34:26 +00:00
Gergő Magyar
b20c8b6ef2
fix(python): guard decorated subtype targets
Fixes #3398
2026-09-28 17:01:22 +00:00
Gergő Magyar
3d09c85ee3
fix(python): record partial subtype dispatch coverage
Fixes #3395
2026-09-28 17:24:41 +01:00
Gergő Magyar
52581cd4e9
test(group): make bridge mtime fixture deterministic
Fixes #3397
2026-09-28 15:52:01 +00:00
Parafee41
2925cfc024
fix(analyze): revisit dirty snapshots after clean revert (#3389)
* fix(analyze): revisit dirty snapshots after clean revert

* test(shared-store): cover clean revert publication

* fix(analyze): clear hidden index flags after clean runs

* fix(analyze): reconcile hidden dirty paths

* fix(analyze): detect newly hidden edits

* test(bench): record hidden-index fixture calls

* fix(analyze): clear restored mode-only receipts

* test(bench): restore receiver baseline after mode fixture

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-28 14:48:07 +01:00
Gergő Magyar
c744ce1dfd
fix(python): resolve mixin calls with CPython C3 order (#3393)
* fix(python): resolve mixin calls with CPython C3 order

Breadth-first MRO bound a diamond mixin call to the wrong base, and dropping the site left the real method out of the graph. Use C3 and take the first compatible method in that order.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(python): correct mixin receiver baseline counts

* fix(python): guard incomplete mixin inheritance

* fix(python): record unresolved MRO tail coverage (#3393)

Track a missing subtype target when the last indexed MRO owner has an unindexed parent, and cover the case with an integration test. Correct the C3 fixture description.

Note: local full npm test timed out amid parse-worker startup failures; focused tests and benchmark baseline passed.

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-28 08:55:13 +00:00
EVA
f6e70016d6
fix(python): resolve mixin self calls to subtype implementations (#3390)
* fix(python): resolve missing mixin self members through subtypes

* fix: honor Python effective MRO and static mixin targets

* fix: bind Python subtype dispatch to receiver provenance

* fix(python): limit mixin fanout to instance receivers

* fix(python): capture call arity and invalidate stale parsed facts

* fix(python): count bound receivers by method context

Preserve static, free, nested and typed variadic parameters; test renamed target receivers without weakening incompatible-arity rejection. Regenerate capture goldens for receiver metadata and eight mixin fixtures. Record the deliberate missing_target coverage outcome: CI measured Python call drops 5->6 and total call drops 113->114; no shape or scaling threshold relaxed.

* test(python): require a call capture before checking unknown arity

* fix(python): bind subtype dispatch to receiver definition

* test(python): include conditional renamed-receiver target

* fix(python): prove positional mixin targets and report partial coverage

Preserve upstream notebook coordinate mapping and maintainer changes. Reject incompatible/implicit-class targets, retain proven targets across ambiguous alternatives, and report capped or unresolved coverage without confusing edge deduplication.

* fix(python): isolate subtype call proof and preserve lookup boundaries

---------

Co-authored-by: Eva <eva@100yen.org>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-28 09:42:56 +05:30
svjack
ccf6b4743d
feat(mcp): add read_file + grep tools (REST parity for /api/file slice + /api/grep) (#3377)
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* feat(mcp): add read_file + grep tools (REST parity for /api/file slice + /api/grep)

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3377)

- Fail read_file and grep when full source is unavailable, matching the HTTP 410 contract instead of an empty grep or a not-found on a missing checkout.
- Reject branch on those tools so a pinned index is not labeled onto checkout bytes, and stop advertising branch in their schemas.
- Point the grep hint at a 0-based read_file window, pass caseSensitive and literal through, and test the handlers.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3377)

- Keep read_file and grep in the multi-repo schema requirement without advertising branch.
- Reject negative maxLines and return integer slice bounds for fractional line positions.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3377)

- Reject a negative read_file endLine before slicing so JavaScript does not treat it as an offset from the end of the file.
- Drop the fractional startLine/endLine claim so the integer schema is the advertised contract.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3377)

- Skip indexed grep paths whose realpath leaves the checkout so a symlink cannot return lines from outside the repo.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(bench): record the 19-tool MCP roster

read_file and grep are real tools, so tools/list and GITNEXUS_TOOLS both
moved from 17 to 19. The timing ratios were already inside budget.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(mcp): share read_file and grep contracts with existing helpers

Boolean grep flags go through isFlagTrue, the whole-file cap is one constant, and checkout tools stay on the per-repo schema without advertising branch.

---------

Co-authored-by: svjack <svjack@example.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-27 13:16:11 +00:00
Sravan Avvaru
86a39202cf
fix(#2965): system headers must not resolve to in-repo files (#3341)
* fix(#2965): system headers must not resolve to in-repo files

C and C++ use two syntactically distinct include forms:
  #include <x.h>   -- angle-bracket: search system include paths only
  #include "x.h"  -- quoted: search relative to the including file first

The old suffix-match fallback in resolveCImportTarget had no awareness
of this distinction, so a repo containing its own stdio.h would capture
every #include <stdio.h> and resolve it to the local file.

Fix:
- Add isSystem?: boolean to the wildcard variant of ParsedImportSyntax
- interpretCImport / interpretCppImport now set isSystem from the
  @import.system tree-sitter capture (present for angle-bracket form)
- resolveImportTarget in both cScopeResolver and cppScopeResolver
  short-circuits to null when context.parsedImport.isSystem is true,
  refusing to suffix-match system headers against workspace files
- Remove C and C++ from KNOWN_GAPS in the conformance test; add proper
  test cases with a parsedImport factory that distinguishes angle-bracket
  (isSystem:true) from quoted (isSystem:false) includes

Test: all 36 external-import-conformance cases pass, including the two
new c/cpp arms that were previously in KNOWN_GAPS.

* fix(#2965): update cpp-imports unit tests for isSystem field

Two test assertions were broken by the interpreter change:

1. Local include: the wildcard ParsedImport now always includes
   isSystem (false for quoted includes). Updated expected object
   to include isSystem:false.

2. System header: the old test asserted interpretCppImport returned
   null for system headers. The refactored design moves the null
   decision to the resolver layer (cppScopeResolver.resolveImportTarget)
   so the call graph and resolution stay separate concerns. The
   interpreter now returns { kind:'wildcard', isSystem:true } and
   the test name/assertion are updated to reflect this.

* fix(#2965): resolve C and C++ includes on search paths

Angle includes follow each translation unit's include roots, so a local
stdio.h no longer captures system headers or another file's -I list.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3341)

- Accept in-repo include roots whose names start with `..` while still rejecting parent escapes.
- Correct the import-target bench comments so CONTEXT_LANGS and newPass match C/C++ header passes.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(c,cpp): read include config per directory for monorepos (#2965)

Angle includes now resolve only against declared search roots, so config
read only at the repo root left monorepo sub-projects with nothing declared.

- compile_commands.json, compile_flags.txt, .ccls, .clangd and
  c_cpp_properties.json are read in every directory; a file takes the
  nearest one, and a nearer database's entry beats a shallower one (clangd).
- CMake include_directories / target_include_directories are read:
  directory-scoped and PRIVATE roots reach their subtree, PUBLIC and
  INTERFACE roots reach every file. ${CMAKE_CURRENT_SOURCE_DIR} and friends
  expand; unresolvable variables and generator expressions are dropped.
- Declared roots win: implicit include/Headers/inc roots apply only when no
  config speaks for the file, and never to a database-listed file.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(c,cpp): give CMake PUBLIC includes only to linked targets (#3341)

target_link_libraries now decides who sees PUBLIC and INTERFACE roots, so an unrelated target no longer resolves another package's headers.

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-27 13:40:54 +01:00
Gergő Magyar
e137daf63b
fix(auto-sync): allow self-hosted remotes via allowed_hosts (#3391)
* fix(auto-sync): allow self-hosted remotes via allowed_hosts

Auto-sync skipped any remote whose host was not github.com, gitlab.com, or gitee.com. Operators can now name exact extra DNS hosts in watch_config.yml without opening the default set.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3391)

- Dial auto-sync DNS names as absolute hosts and store that URL so a later fetch cannot follow a search domain.
- Reject ambiguous numeric host spellings; an exact dotted IPv4 the operator listed stays opt-in.
- Document allowed_hosts on the root auto-sync contract.

Note: pre-existing failure in unit tests that require dist/cli/index.js and parse-worker.js (this worktree has no build); not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-27 10:18:57 +01:00
Gergő Magyar
274ec3df6e
feat: index Jupyter notebooks as Python (#3381) 2026-09-27 05:54:37 +00:00
Gergő Magyar
51fb64c976
fix(swift): model Swift modules like the compiler (nested packages, Xcode targets, linear visibility) (#3387)
* fix(swift): discover nested Package.swift manifests for module grouping

A Swift monorepo laid out as Core/<pkg>/Package.swift has no root manifest
and no root Sources/, so every Swift file fell into one __default__ module.
The Swift resolver now walks the repo (bounded, skipping dot, ignored, and
Xcode bundle directories) and adds each nested package's targets, keyed by
repo-relative directory and ordered deepest-first so first-match grouping
picks the most specific target. Import resolution keeps the root view.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(swift): bound implicit IMPORTS edges by a total budget

Implicit same-module IMPORTS are n*(n-1) edges per module, and the graph
keeps every relationship in one Map capped by V8 at 2^24 entries. Emission
now fills a 4M-edge budget smallest module first and skips, with a warning,
any module that does not fit, so no module layout can crash analyze.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(swift): skip pairwise sibling passes for oversized modules

The target-siblings and sibling-type-bindings passes copy every file's
declarations into every other file of a module, so heap grows as n^2:
about 3.8 GB at 1,000 files with 15 defs each, about 15 GB at 2,000.
Modules over 1,000 files now skip both passes with a warning and resolve
through the global name fallback. GITNEXUS_SWIFT_MAX_MODULE_FILES changes
the ceiling.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(swift): cover nested SwiftPM packages end to end

A fixture with three nested Package.swift manifests (two declaring a target
named Net) and no root manifest. Each target gets its own implicit IMPORTS,
none cross packages, and Config() resolves to the caller's own package.
The Swift capture golden and scope-capture fingerprint grow with the new
fixture corpus only.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(review): apply review findings

- Rebase nested target paths with the existing Zig path helpers, which also
  reject Windows drive paths and paths that resolve to the repo root (whose
  empty prefix would group every file into one target).
- Document GITNEXUS_SWIFT_MAX_MODULE_FILES in the README env table.
- State that skipped modules resolve through lower-confidence fallback edges,
  why nested-type fragments still run for oversized modules, and fix a stale
  loader name in the target-grouping header.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(swift): cover every skipped Xcode bundle suffix in the package walk

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(swift): model modules the way the compiler does

Replace the caps from the first round with representations that stay
linear, and derive module identity from the same sources the compiler uses.

- Same-module visibility is one File -> Module IMPORTS edge per file
  (reason `module-membership`) instead of an edge per ordered file pair.
  Incremental importer expansion treats files sharing a Module hub as
  importers of each other. The 4M edge budget is gone.
- Sibling declarations and type bindings live in one shared table per
  module in the namespace channel C# uses since #1871, instead of being
  copied into every file. The 1,000-file ceiling and
  GITNEXUS_SWIFT_MAX_MODULE_FILES are gone.
- Modules come from root and nested SwiftPM manifests (Sources, Source,
  src, srcs; plugins under Plugins; the newest Package@swift-X.Y.swift)
  and from Xcode native targets in project.pbxproj, including Xcode 16
  synchronized folders. Target paths are matched from the repo root, so
  a vendored copy of the same layout is no longer grouped into a root
  target (this reverses #2931's floating match).
- `import X` resolves to the modules named X instead of any folder named
  X. A name no module carries is external when every manifest and
  project was read completely.
- The global-name-fallback veto uses the same membership, so test
  targets, custom-path targets and Xcode targets have module identity.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(bench): move the Swift package bench to module grouping

The bench still imported the removed groupSwiftFilesBySpmTarget. Its
first-wins probe keeps its meaning under root-anchored grouping: the
clash file sits under Sources/Mod0, and the Sources/Mod1 further down its
path is a vendored copy.

Plugins are now non-importable modules under Plugins/, so parse_targets
counts importable source targets (still 3) and parse_binary_skipped also
checks that the plugin is recorded that way. Baseline values unchanged;
the notes say why the definitions moved.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(swift): match compiler module names, manifests, and target filters

- Module names follow the compiler's c99 mangling (`my-lib` imports as
  `my_lib`); Xcode targets use a literal PRODUCT_MODULE_NAME or
  PRODUCT_NAME when the project sets one.
- Package manifests are one-file modules, as SwiftPM compiles them. Files
  outside every target are one-file modules once every manifest and
  project was read; otherwise they keep the shared __default__ module.
- Xcode 16 synchronized-folder exceptions add a file to a target that
  does not list the folder, and remove it from one that does.
- SwiftPM `sources:` / `exclude:` narrow a target; a computed list marks
  the manifest unreadable.
- The default target folder is chosen once per package, as SwiftPM does,
  instead of per target.

Refs #3355

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Address PR review feedback (#3387)

- Inferred Swift folders keep SwiftPM's first predefined parent when a
  target name repeats (Sources before srcs).
- The pbxproj parser rejects a \U escape without four hex digits instead
  of decoding garbage, so the project reads as incomplete.
- Extension owners are stamped in every Xcode membership of a shared file.
- A plugin name never reaches a plugin: neither the fallback veto nor the
  folder-index fallback treats a known non-importable module as imported.
- A file an Xcode target compiles keeps that membership even when it also
  lies under a SwiftPM target directory.
- The workspace scan bounds the queue, not only the directories read.
- Integration tests require each module hub to exist before comparing.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-27 06:24:35 +01:00
Gergő Magyar
0261982d9a
fix(analyze): make --memory-budget set the real heap and report rebuild reasons once (#3386)
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* feat(analyze): --memory-budget flag with heap-limit override and worker-pool degradation (#3137)

Adds an explicit `--memory-budget <mb>` CLI flag that overrides the
RAM/cgroup auto-sized main-thread heap ceiling for the parse phase:

- CLI validation (integer >= 200 MB) before bar.start(), matching the
  --workers pattern
- Threaded CLI → runFullAnalysis → PipelineOptions → parse-impl as
  memoryBudgetBytes
- parse-impl resolves the heap limit as budget ?? v8.heap_size_limit, so
  both the preflight projection warning and the #2649 mid-loop abort
  probe honor the budget
- Graceful degradation: when the projected heap need exceeds the budget
  at the computed pool size, the pool shrinks (never below 1, never
  above the operator's --workers) before sub-batch math and pool
  construction, so all downstream consumers see the degraded size

Omitting the flag keeps the auto-sizer path byte-identical.

Refs #3137

* feat(analyze): collapse rebuild-gate log into one summary + persist needsFullRebuild verdict (#3137)

The nine meta-mismatch rebuild gates (pdg mode, content retention,
schema fingerprint, graph-write collapse, analysis features, Spring
vendor prefixes, runner identity, FTS CJK mode, embedding dims) each
logged individually and set force:true independently. An upgrade that
trips several at once printed a scattered wall of near-identical
warnings.

- Gates now collect into rebuildReasons[]; a single summary block
  prints them (inline for one, numbered for many) and sets force once.
  Per-gate Tip text is preserved verbatim inside the entries.
- The verdict persists to meta (needsFullRebuild: {reasons, recordedAt})
  BEFORE the rebuild starts. If the rebuild is interrupted, the next
  run announces the recorded reasons up front instead of quietly
  attempting an incremental write on a half-rebuilt index — the gates
  may not all re-fire against a wiped DB.
- The verdict is cleared on the next successful completion (the final
  meta does not carry the field forward).

Semantics unchanged: every gate was already evaluated (none
early-returns), force is idempotent, and a rebuild happens iff at
least one reason fired.

Refs #3137

* refactor(cli): share one integer flag parser across analyze, watch, and wiki

Replace the duplicated Number.isInteger checks for --workers, --embeddings,
the positive env-backed analyze flags, the watch interval flags, and wiki's
--timeout/--retries with parseIntegerOption (per-flag minimum, optional
scale for the safe-integer bound). User-facing messages are unchanged.

* fix(analyze): make --memory-budget set the real V8 heap through the respawn

The budget now drives ensureHeap's existing respawn instead of a parse-phase
override, so the #2649 preflight, mid-loop abort, remedy text, and GC pacing
all see one heap limit. The respawn sizes old space plus three semi-spaces to
equal the budget, the child resolves as already at the budget (no second
respawn), and GITNEXUS_HEAP_LIMIT_SOURCE drives budget-aware OOM advice.
Budget validation moves to the preAction hook so analyze and watch reject a
bad value before any respawn. Removes the pool-shrink block and the
memoryBudgetBytes plumbing through PipelineOptions and run-analyze.

* docs(analyze): describe --memory-budget accurately and translate its help

The help text claimed graceful worker-pool degradation, which no longer
exists; it now says the flag sets the main-thread V8 heap and that parse
workers keep their own caps. Wires the option through the help i18n map
with en and zh-CN strings, and documents it in both READMEs and the
out-of-memory troubleshooting section.

* feat(analyze): add a pure rebuild-reason collector

One collector per run holds keyed rebuild reasons, merges by key, flattens
reasons stored by an interrupted rebuild into one recovery entry, validates
stored reasons on read, and formats the single up-front summary plus one
follow-up line for reasons added after the pipeline.

* fix(analyze): route every forced rebuild through one reason collector

Every path that forces a full rebuild (the nine meta gates, --force,
--skills, --no-parse-cache, --drop-embeddings, --repair-fts retention,
Spring Actuator, AsyncAPI, shared-store graph gaps, dirty-flag recovery,
the post-pipeline capability gate, and the #2409 escalation) now adds a
keyed reason to one collector. The rebuild decision is applied from the
collector at fixed checkpoints, one summary prints right before the
pipeline, and late reasons print one follow-up line. The escalation stays
non-forcing. runFullAnalysis returns the collected keys, which replaces the
runner-identity source-regex test with a behavior test. Removes the separate
needsFullRebuild field and its announcement, and stops folding --skills and
--no-parse-cache into --force.

* fix(analyze): persist rebuild reasons on the existing crash marker

Every incrementalInProgress writer (the full-rebuild stamp before the wipe,
the incremental pre-write, saveIncrementalDirtyState including the #2409
escalation, and buildFtsDirtyStamp) now carries the collected reasons into
the active slot's metaDir, so an interrupted rebuild explains itself on the
next run through one merged recovery entry. A successful run still clears
the marker and its reasons; the FTS-park recovery clears them without
forcing.

* test(analyze): cover every rebuild-reason key through runFullAnalysis

Add a coverage table that the typechecker keeps complete: every
RebuildReasonKey maps to a test file that drives it through
runFullAnalysis and asserts the returned key. Adds the missing
graph-write-collapse and drop-embeddings drivers, asserts the key in the
existing pdg-mode, spring-vendor-prefixes, cjk-segmentation, and
embedding-dims tests, and removes plan-local IDs from test names and
comments.

* fix(review): apply review findings

- A --max-old-space-size pin equal to --memory-budget no longer counts as
  the exact budget heap (V8 adds the young generation on top); only the
  budget-respawned child skips the respawn, so the limit really equals the
  budget.
- Snapshot the analyze env before ensureHeap and restore
  GITNEXUS_HEAP_LIMIT_SOURCE, so a kept process does not leak its heap
  source into a later programmatic analyzeCommand call.
- --skills and --no-parse-cache keep the forced storage requirements they
  had before force stopped being folded from them.
- Merge the duplicated follow-up announcement into one helper and fix a
  stale --drop-embeddings comment.
- The rebuild-reason coverage table no longer greps driver files for the
  key string; add tests for a programmatic invalid budget and the
  multi-cause interrupted-rebuild text.

* fix(review): don't announce the escalated write as a full rebuild

The #2409 escalation is a non-forcing reason, but its follow-up line used
the 'Full rebuild also required' lead. A follow-up that carries only
non-forcing reasons now leads with 'Write plan changed'.

* docs(analyze): document GITNEXUS_HEAP_LIMIT_SOURCE in the env table

CONTRIBUTING requires every new GITNEXUS_* variable to have a row; this one
is internal (set by analyze itself) and exists so OOM advice points at
--memory-budget.

* fix(review): address GitNexus review threads on #3386

- heapPressureRemedy measures pressure against the real auto-sized cap
  (heapCapMbFor) instead of a flat 0.75 x RAM, and no longer tells a
  GITNEXUS_MEMORY=off run with no pin to drop a pin that does not exist.
- toStored() persists the interrupted rebuild's reasons first, as documented.
- ensureHeap's doc names which paths leave GITNEXUS_HEAP_LIMIT_SOURCE unset.
- The heap-respawn suite restores the caller's GITNEXUS_MEMORY.
- The non-forcing follow-up test rejects any 'full rebuild' wording.

* fix(review): require both budget flags and check key coverage at runtime

- A budget-respawned child is recognized only when the inherited heap-source
  marker comes with both the budget's old-space and semi-space flags; the
  marker alone is an inherited env var, not proof. The old-space parser is
  generalized to any V8 size flag instead of copying its regex.
- REBUILD_REASON_KEYS is exported and RebuildReasonKey derives from it, so the
  coverage table is checked at runtime (CI does not type-check test files).

* fix(review): don't claim a full rebuild in a non-forcing summary

formatSummary and formatFollowUp now share one leadFor helper, so a block
of only non-forcing reasons reads 'Write plan changed' in both.

---------

Co-authored-by: ChunxueLi <mecoloud@users.noreply.gitee.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
2026-09-26 18:14:36 +01:00
azizur100389
5fc518d2cb
fix(dart): resolve package imports by pubspec identity (#3369)
* fix(dart): resolve package imports by pubspec identity

* fix(dart): keep package-identity edges out of the cycle check

Pubspec identity edges invalidate importers when a manifest changes. They cannot form an init cycle, so the cycle query excludes them before the row cap. Discovery reads each manifest once, with a size bound, and resolution shares one package-URI parser with those edges.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3369)

- Reject package URIs with an empty library path so they do not emit identity edges
- Skip the pubspec permission test where chmod cannot deny reads
- Document that the Dart heap probe is not a uniqueTarget spelling

Note: pre-existing failure in test/unit/incremental-index-extension-dml-gate.test.ts not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): list package directories through a no-follow descriptor

A directory replaced by a symlink between the parent listing and the next visit must not be traversed. The walk opens it with O_DIRECTORY|O_NOFOLLOW and lists that inode.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(mcp): keep the Dart identity reason out of MCP startup

The cycle query still excludes the same reason string. The constant now lives with the other non-initializing import reasons, so MCP startup does not load a language provider.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3369)

Open discovered pubspecs and child directories through the parent directory inode on Linux, so replacing that directory with a symlink cannot redirect the walk.

Note: pre-existing failure in test/unit/incremental-index-extension-dml-gate.test.ts (worker pool startup timeout) not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): reject Windows junctions during pubspec walk

* Address PR review feedback (#3369)

Refuse pubspec discovery that cannot set O_NOFOLLOW, and verify macOS child opens against the pinned directory chain instead of reopening a mutable path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): bound live pubspec descriptors and close the macOS check-then-open

A deep directory chain held one descriptor per level until open failed with EMFILE, and macOS child opens statted the path before using it. Refuse the next directory at 64 live handles, and stat only the descriptor opened with O_NOFOLLOW.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): open pubspecs non-blocking so a FIFO cannot hang discovery

A listed pubspec can be replaced by a FIFO before open. O_RDONLY alone waits inside open for a writer, so the file-type check never runs. O_NONBLOCK returns immediately and the walk rejects the non-regular file.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): cap names read from each pubspec directory

readdir kept every entry before the visit budget could run, so one huge directory could allocate without bound. Read the listing one name at a time and fail closed past 100,000 entries.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(dart): reject a pubspec that grows while its descriptor is read

The size cap was taken from the stat before the read, so a file that grew in that window could be parsed from a short prefix. Re-stat the same descriptor afterward and fail closed when the size no longer matches the bytes captured.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): rebaseline the Dart scope-capture fingerprint for package-import fixtures

The benchmark hashes every dart-* fixture. The new package-import corpus adds six Dart files and 33 capture groups. Parking that directory restores the previous fingerprint, so this is corpus growth, not a capture change.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-26 13:21:09 +01:00
dependabot[bot]
4d262dd7d4
chore(deps)(deps): bump mnemonist from 0.40.4 to 0.40.5 in /gitnexus (#3384) 2026-09-26 07:22:00 +01:00
dependabot[bot]
06ce60beb6
chore(deps)(deps): bump ignore from 7.0.9 to 7.0.10 in /gitnexus (#3383)
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Bumps [ignore](https://github.com/kaelzhang/node-ignore) from 7.0.9 to 7.0.10.
- [Release notes](https://github.com/kaelzhang/node-ignore/releases)
- [Commits](https://github.com/kaelzhang/node-ignore/compare/7.0.9...7.0.10)

---
updated-dependencies:
- dependency-name: ignore
  dependency-version: 7.0.10
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-25 22:59:32 +01:00
Gergő Magyar
e06c2dd13e
fix(impact): fail closed on id-less targets and follow ??/||/?: callable values (#3354) (#3373)
* fix(impact): fail closed on id-less targets and follow ??/||/?: callable values (#3354)

#3354 reports `impact` returning a byte-identical 1037/CRITICAL/`exact`
result for three unrelated targets, with only `target.name` differing.
The reporter's `target` had no `id` and no `filePath`, which the traversal
path always emits, and a synthetic reproduction of their monorepo (pnpm,
Cloudflare worker-configuration.d.ts in five packages, Hono, a Durable
Object) resolves every target correctly on main. So the identical result
was not reproduced. The repro did surface two real gaps and one hardening
point:

- `_runImpactBFS` now throws when the target has no node id. Every
  caller already catches, so impact reports `impactedCount: null,
  risk: UNKNOWN` instead of a normal-looking blast radius that cannot be
  about this symbol.
- Callable-value flow followed only a single designator on the RHS, so
  `const sweep = env.__sweep ?? runSweep; await sweep(env)` produced no
  flow and `scheduled` was missing as a caller of `runSweep`, while the
  result still claimed `epistemic: exact`. Each branch of `??`, `||`,
  `or`, and `?:` now flows into the binding (language-neutral: operator
  and field names, no language checks). Parse cache bumped 104 -> 112
  (105-111 are claimed by open PR #3326).
- A whitespace-only `target_uid` (strict adapters materialize omitted
  optional strings) is treated as omitted and falls back to the name.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(mcp): treat a non-string uid as omitted instead of throwing (#3354)

Review follow-up on #3373. `query.uid?.trim()` called `.trim()` on a
client-supplied value, and the MCP envelope is not type-validated, so
`context({uid: 42})` threw a TypeError that `context()` does not catch.
Before #3373 the same input ended as a structured not_found.

A non-string uid now counts as omitted, which matches how
normalizeToolParams already treats a non-string `target_uid`. The impact
and trace not-found messages print a trimmed uid only when it is a
non-blank string, so a strict adapter sending " " sees the name it
searched for instead of `' '`.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(ingestion): expand ??/?:/ternary branches through a provider hook (#3354)

Review follow-up on #3373. The shared value-alternatives rule keys on
tree-sitter field names, and several grammars spell the same construct
differently, so the expansion never fired for them:
- Kotlin `elvis_expression` has no fields.
- Swift uses `value`/`if_nil` and `if_true`/`if_false`.
- Dart uses `first`/`second`, and its conditional has no `condition` field.
- Python `a if c else b` has no fields.
The `'?:'` operator entry was dead, since no bundled grammar emits it.

Add an optional `valueAlternatives` hook to CallableFlowCaptureOptions,
consulted before the shared rule, and implement it in the Kotlin, Swift,
Dart, Python and Ruby providers. Shared code still names no language.

Ruby's statement-bodied `if`/`unless`/`elsif` also carries
`condition`/`consequence`/`alternative`, so the shared ternary rule dug
an identifier out of an arbitrary statement (`g = h; 0` flowed `h`) and
produced a wrong CALLS edge. The Ruby hook now keeps a multi-statement
branch as one opaque source, as before #3373.

Tests: new provider fixtures for Python, Kotlin, Swift, Dart and Ruby
(including a Ruby negative), and TS chain, parenthesized, callable-left
and `&&` negative cases. Captures goldens gain one entry each for the
new fixtures. SCHEMA_BUMP stays 112 (same unreleased PR).

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(ingestion): keep long ||/??/?: chains linear in callable-flow capture (#3354)

Expanding value-selecting sources into per-branch flows made long chains
super-linear and, past a few thousand operands, a stack overflow. A
generated `w === "k0" || w === "k1" || ...` keyword table took 6.7 s at
1000 operands and 48 s at 2000, and threw RangeError at 8000.

Two causes, both fixed without changing any emitted capture:

- valueAlternatives recursed once per operator level and spread the
  partial results at every level. It is now an explicit stack that
  writes to one output array. The left-to-right order, the paren
  unwrapping, and the provider-hook contract (`[node]` means opaque) are
  unchanged.
- Every alternative ran its visibility walks from its own leaf, which
  can be as deep as the chain is long, all the way to the root. Also,
  tree-sitter's `parent` re-descends from the root, so each step costs
  the node's depth. The walks now jump between "anchor" nodes, the only
  nodes any check can match: region ids and formal owners. The nearest
  anchor is memoized per node across the file, and parents come from a
  map recorded by the one DFS the synthesizer already does.

After the fix: 0.34 s / 0.23 s / 1.6 s at 1000 / 2000 / 8000 operands.
That is within about 1.2x of main without the expansion; what remains
is tree-sitter query time. Capture fingerprints are byte-identical
before and after the fix for all 16 scope-capture bench languages and
for the Python harness.

A `typescript-deep-chain` case added to the scope-capture bench guards
the scaling: 1.11-1.22 now, 7.5-8.0 before. A unit test pins a
10000-operand chain: it must still yield the seed for a callable
operand, the copy for a formal at the deepest leaf, and the invoke.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(kotlin): see through braced if-branches in callable alternatives (#3354)

tree-sitter-kotlin wraps a braced branch as
`control_structure_body > statements > <expr>`, so for any non-empty
block kotlinValueAlternatives saw exactly one named child (`statements`)
and pushed the wrapper itself as the branch value. operandSyntax emits
nothing for a `statements` node, so
`val run = if (c) { ::f } else { ::g }; run()` produced no flow edges,
and the "multi-statement block stays opaque" guard could never fire.

Descend one level through `statements` and require exactly one
non-comment expression there. Empty blocks (`{}` has no named children),
multi-statement blocks, and `if` without `else` still return the whole
`if` as one opaque source. The doc comment now describes that.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(ruby): skip only the multi-statement branch in callable alternatives (#3354)

rubyValueAlternatives returned `[node]` (opaque) as soon as one branch
held more than one statement. Two things went wrong because of that:

- At the top level, `run = if c then g = h; 0 else method(:f) end`
  dropped the single-statement `else`, so `f` got no flow edge.
- In an elsif chain, the outer `if` pushed the `elsif` node as a branch.
  The shared loop called the hook on it again, got `[elsif]` back, and
  used the whole elsif subtree as one source. So in
  `if a then method(:run_a) elsif b then g = h; 0 else method(:run_b) end`
  the `run_b` edge was lost.

The hook now walks the elsif chain itself and skips each multi-statement
branch, while every single-statement branch still becomes an
alternative. This cannot add a wrong edge: each emitted alternative is a
value the conditional really evaluates to, and nothing is taken from the
skipped branch. Before, that branch did not contribute a resolvable
value either. A whole conditional used as a source becomes a
qualified-name seed, which resolves to nothing when it has more than one
identifier leaf. With a single identifier leaf, it could even seed the
condition variable. When no branch is a single statement, the
conditional still stays one opaque source, as before.

Ruby captures golden: ruby-callable-alternatives/app.rb goes from 33 to
58 capture groups. 23 of them come from the new fixture functions
(checked against the old source). The other 2 are the new branch
alternatives, `statement_if -> run_sweep` and `elsif_chain -> run_b`.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(ingestion): flow the right operand of && / and into callable bindings (#3354)

`a && b` / `a and b` yields `a` when it is falsy and `b` otherwise. A
falsy value is never a callable, so the right operand is the only one
that can be invoked later. The capture left `&&` unexpanded, and the
compound source became a qualified seed that resolves to nothing:
`const run = x && f; run()` gained no edge to `f` while impact claimed
`exact`. Python `x and f or g` reached only `g`.

The shared expansion now maps `&&` / `and` to the right branch only.
It recurses, so `x and f or g` reaches both `f` and `g`. Where `&&`
yields a boolean (Java, C#, Go, Rust, C, C++, PHP, Zig), the
destination cannot be invoked, so the flow never meets a call. A
before/after CALLS diff over all 83 lang-resolution fixtures that
contain `&&` or `and` shows exactly one new edge,
logicalAnd -> runAndRight. PHP and Ruby bind low-precedence `and`
looser than `=`, so `$g = $x and $y` never reaches this rule.

The Python golden digest changes only for the extended
python-callable-alternatives fixture.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(ingestion): keep operator branches of a value-selecting source opaque (#3354)

The fan-out sent every branch of `??` / `||` / `or` / `?:` to
emitAssignmentFact on its own, including branches that compute a value.
`Handlers.fallback === run || fb` then emitted the comparison as a seed
whose qualified text sliced to receiver `Handlers`, member `run`, and
resolveBoundMemberCandidates minted a CALLS edge to `Handlers.run`. The
same happened for `this.state !== run ?? this.fallback`,
`this.state + run || this.fallback`, and Python
`self.state != run or self.fallback`. Before the fan-out, the whole
compound source was one opaque seed.

A branch that is a binary operator expression now contributes nothing.
The check uses the field vocabulary valueBranches already reads (a
`left`/`right` pair, or an `operator`/`operators`/`op` token after the
expression start), not grammar type names. Member accesses that field
their `.`/`->` as `operator` (Ruby `call`, C/C++ `field_expression`) also
field a member name through the list memberParts uses, now shared as
memberNameNode, so they stay designators. Unary `&f`/`*fp` lead with
their operator and stay designators. Call results were already dropped
by emitAssignmentFact, and lambdas and callable references are unchanged.

CALLS-edge diff over 87 lang-resolution fixtures (505 -> 501 edges):
only the four false edges above were removed, and none were added.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(ingestion): pin the LEFT operand of ?? / or / elvis per provider (#3354)

The Python, Kotlin, Swift and Dart "override ?? fn" cases put an
unresolvable parameter on the left, so a fan-out that kept only the
last operand still passed them. Each fixture now adds a callableLeft
case with a real function on the left and a parameter on the right
(`run_left or fallback`, `::runLeft ?: fallback`, `runLeft ?? fallback`),
and each language asserts `callableLeft → runLeft`.

Mutation check: dropping the left branch from the shared `??`/`||`/`or`
rule and making the four provider hooks return only their last operand
fails all four new tests, while the existing right-operand tests still
pass.

Capture goldens were regenerated with UPDATE_GOLDEN=1:
- python app.py: 35 -> 85 groups. 35 -> 75 is stale drift from
  8ad0d8db7, which added the comparison cases without regenerating.
  75 -> 85 is the new case: 2 declarations, 2 scopes, the variable,
  the `run()` reference, and 4 callable-flow captures (seed -> run_left,
  copy <- fallback, formal, invoke).
- swift App.swift: 25 -> 36 groups for the same new case, plus
  Swift's type-binding for the fallback parameter.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(bench): re-baseline scope-capture fingerprints for #3354 callable alternatives

This PR makes a callable chosen by a value-selecting source flow every
branch it can yield (??, ||, or, && right operand, ternary, statement
if, elvis). It also keeps an operator branch opaque. Both change
@callable-flow captures, and the PR adds *-callable-alternatives
regression fixtures that these benches glob.

To verify, the BASE (merge-base 233ca2849) and HEAD emitters were run
over the same HEAD fixture corpus plus the synthetic source. Every
added or removed match is an @callable-flow.* match on one of those
sources. The pre-existing corpus is byte-identical for all 16
scope-capture languages and for Python. Emitter delta, then corpus
growth:

- ruby:       +5/-0   app.rb (+1 file, +58 groups)
- swift:      +6/-3   App.swift (+1 file, +36 groups)
- dart:       +6/-3   app.dart (+1 file, +33 groups)
- kotlin:     +8/-2   App.kt (+1 file, +71 groups)
- typescript: +18/-14 4 files (+288 groups)
- python:     +11/-7  app.py (+1 file, +85 groups)

The removed matches are whole-expression seeds and copies that carried
a qualified name of the compound source. They are replaced by one
seed or copy per operand. Synthetic scaling counts are unchanged and
every scaling ratio stays under budget. Per-language notes are in
baselines.json under _rebaselined_3354_callable_alternatives.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* refactor(mcp): share one blank-uid check across impact, trace and symbol lookup (#3354)

The "trimmed uid, or omitted when blank/non-string" rule was inlined four
times, three of them trimming twice. nonBlankUid() owns it now; behaviour is
unchanged. The whitespace and empty target_uid tests collapse into one it.each.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* docs(cfg): correct the Kotlin and Python grammar-field notes (#3354)

The Kotlin CFG visitor claimed no control-flow node has fields; a parse of
the vendored grammar shows if_expression fields condition/consequence/
alternative (when/for/while/do/try/elvis are fieldless). The Python harvest
note listed conditional_expression's children like field names; the node is
fieldless and they are positional. Both notes were misleading reviewers of
the #3354 value-alternatives hooks. Comment-only.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(ingestion): skip optional-grammar suites in callable-alternatives providers test (#3354)

Kotlin, Swift and Dart grammars are optional installs. Guard their describe
blocks with isLanguageAvailable, as swift.test.ts and dart.test.ts do, so an
install without one of them skips instead of failing.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(ingestion): probe the Dart parser before enabling its providers suite (#3354)

isLanguageAvailable only proves the module loaded; tree-sitter-dart can still
fail on setLanguage. Probe loadParser/loadLanguage and skip on failure, the
same guard dart.test.ts uses.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-25 21:43:24 +01:00
Gergő Magyar
6bb99767ff
fix(auto-sync): HTTPS remotes, OpenSSH image, and rc embeddings (#3378)
* fix(docker): install OpenSSH in the CLI runtime image

Auto-sync requires git SSH remotes, but the published image omitted
openssh-client so every clone failed with ssh: not found.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(auto-sync): accept HTTPS remotes and reclone failed checkouts

Allowlisted HTTPS URLs can clone without SSH keys, and a timed-out
clone with no remote.origin is quarantined instead of blocking forever.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(auto-sync): honor .gitnexusrc embeddings and warn on empty vectors

Auto-sync analyze now reads embeddings from the clone's project config,
and query reports when an index has no vectors so keyword fallback is visible.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): warn when CodeEmbedding table is missing (U5)

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): wrap long openssh-client test line for prettier

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(query): keep keyword-only indexes off query.warning

Empty or missing CodeEmbedding is the default index. Put the #3372 notice in a once-per-backend log line so FTS-success query results stay warning-free.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): bound rc reads and quarantine only a missing origin

Drop the implementation plan from the branch. Auto-sync reads .gitnexusrc through the bounded control-file reader, and a git config failure no longer relocates a live checkout. The same allowlisted repo can switch between SSH and HTTPS without a refused pull.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(auto-sync): share repo identity and skip a second origin read

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(auto-sync): clean temp fixtures and cover nested embeddings precedence

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(auto-sync): skip the symlink rc fixture on Windows

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(auto-sync): reject symlink rc files on every platform

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(ci): run auto-sync symlink and clone tests on Windows and macOS

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(git-clone): keep Windows CI on file URLs and POSIX permission checks

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(git-clone): keep the SSH-to-HTTPS origin check offline

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-25 19:42:26 +01:00
Parafee41
233ca28492
fix(ruby): model block-taking class factories (#3376)
* fix(ruby): model block-taking class factories

* fix(ruby): cover braced factory blocks

* handle brace factory blocks

* fix nested Ruby factory ownership

* test(ruby): pin factory ownership by node id

* test(ruby): cover brace factory variants

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-25 12:47:25 +01:00
Gergő Magyar
ad5c7364e1
feat(storage): share one index store across linked worktrees and sibling clones (#3374)
* feat(storage): resolve the shared sibling-store identity and layout (#3352)

Linked worktrees of one repository resolve to one store under
GITNEXUS_HOME/stores/<key>, keyed by the canonical git common dir. The
resolver reads the .git entry directly, so hot paths spawn no git. Slot
naming moves to a leaf module so storage-resolver and shared-store do not
import each other.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(storage): resolve a shared checkout's graph and existing store slot (#3352)

getStoragePaths reads a flat slot's recorded graphPath only for checkout
slots under the stores directory; other paths keep <storagePath>/lbug with
no I/O. A recorded path outside the store's commit graphs is ignored.
resolveStoragePath falls back to an existing store slot for an
unregistered checkout, so reads never move to an empty slot.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(analyze): share one immutable commit graph across clean worktrees (#3352)

A linked worktree writes its own slot in the shared store. A new slot
is seeded with a pointer to the nearest commit graph, so a clean
checkout at an indexed commit takes the up-to-date path and writes no
graph. A checkout with local changes gets a copy-on-write private
graph before its first write. After a successful run, a clean checkout
at HEAD publishes its graph into commits/ under a store lock, or drops
it when that commit graph already exists. Commit graphs are never
written after publish.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(analyze): seed a worktree's graph from the nearest index (#3352)

A new shared slot is seeded from the store's commit graph nearest to
HEAD, else from this checkout's or the main checkout's
repository-local index (copied under that index's lock, source left in
place). The run that follows is up to date or incremental instead of a
full build. If a pointed-at shared graph has been removed, analyze
falls back to a full build instead of an incremental update over a
missing baseline.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(analyze): keep one parse cache per shared store (#3352)

Linked worktrees read and write the parse cache and durable ParsedFile
store under the store's caches/ directory. Before pruning, a run folds
in the chunk keys recorded by every member slot and commit graph, and
the fold, prune and save run under a store-wide cache lock so one
member never evicts another's live chunks.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(clean): remove only what no shared-store member references (#3352)

Deleting a shared checkout slot (clean, clean --all, remove, and the
server delete route) recounts references under the store's publish
lock and deletes commit graphs no member points at, then the store
itself once empty. A graph that cannot be deleted (open on Windows) is
reported and kept for the next pass. clean --gc also drops member slots
whose worktree is gone or no longer resolves to the store.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(analyze): let a clone opt in to a shared store with --share-with (#3352)

An independent clone joins a linked worktree's shared store only with
analyze --share-with <repo>, and only when its normalized origin URL
matches that member's (credentials stripped, as #2054 compares). The
registry remembers the choice. --no-share moves an opted-in clone back
to its own .gitnexus and reclaims its old slot; linked worktrees always
share and are pointed at GITNEXUS_SHARED_STORE=off instead.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): count a shared checkout's commit graph as its code index (#3352)

A clean shared checkout reads a commit graph and owns no graph file, so
the code-index presence check made status report it unindexed and
registry validation skip it. The check now follows the slot's
validated graphPath.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(storage): adopt existing worktree indexes and report shared-store state (#3352)

A shared checkout gets <repo>/.gitnexus/store.json pointing at its store
slot; resolution follows it only when it names that checkout's own slot.
An existing local index seeds the slot and is left in place. status
(text and --json) and doctor report the store, whether the graph is
shared or private, and any leftover local index, which
clean --local-index removes while keeping the pointer. With
GITNEXUS_SHARED_STORE=off a previously shared checkout indexes into its
own .gitnexus again and never writes a commit graph.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(mcp): read the graph a shared checkout points at (#3352)

MCP, the HTTP API, group sync, augmentation, and the Claude hook (all
three byte-identical copies) resolve a flat slot's graph through
resolveGraphPath instead of joining 'lbug' onto the storage path, so
checkouts at one commit share one open database. The embeddings writers
(embeddings sync and the server embed job) take a private copy first
and never write an immutable commit graph. The post-analyze settle
probe accepts fresh metadata that points at an existing commit graph.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* docs: describe the shared worktree index store (#3352)

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* refactor(storage): reuse helpers across the shared-store code (#3352)

One graph-clone helper replaces two copy-then-rename blocks; clean and
status reuse formatSlotSize; leaving a store reuses
removeSharedStorePointer; withStoreLock is imported from its own module
instead of a re-export.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address review findings in the shared store (#3352)

- Never publish a graph whose build saw dirty files, and never trust a
  local-index seed on the up-to-date path; it may hold reverted edits.
- Record slot pointers and reclaim under the publish lock, and reclaim
  right after each publish, so a commit graph is never deleted between
  publish and pointer save and superseded graphs don't pile up.
- clean --gc decides membership from the registry, so opted-in clones
  and a main checkout without worktrees are not dropped.
- Leaving a store re-registers first, so an up-to-date run cannot leave
  the registry pointing at a deleted slot.
- Drop pinned branch summaries when an entry moves into a store slot.
- Keep run.cjs and the AGENTS.md runner path inside the checkout.
- MCP handles follow the slot's current graph, and branch scoping reads
  the slot's own metadata.
- Cache resolveGraphPath by metadata file identity; look up opted-in
  entries with canonical registry paths.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(cli): localize help for the shared-store flags (#3352)

--help renders option text from the i18n catalog, so --share-with,
--no-share, clean --gc and clean --local-index need keys in both
locales, not just index.ts literals.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): lock the embed-job graph copy and skip it on forced rebuilds (#3352)

The server embed job copies a shared checkout's graph under the slot's
index lock, so a CLI analyze in another process cannot interleave. A
forced rebuild with no embeddings to carry over drops the pointer
without copying a graph it would discard unread.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* docs(agents): bump AGENTS.md version for the shared store notes (#3352)

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): keep shared-store file reads inside checked paths (#3374)

Address CodeQL js/path-injection and js/file-system-race on
shared-store.ts: every filesystem read rebuilds its path under a fixed
parent with an inline path.relative barrier, the .git probe is one read
(EISDIR marks a directory) instead of stat-then-read, and the graph
pointer cache stats and reads through one file descriptor.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address review feedback on the shared store (#3374)

- Hold the slot index lock for the whole server embedding job, not
  just the graph copy.
- --no-share re-registers and deletes the old slot under that slot's
  index lock, so a running shared analyze cannot re-register it.
- clean --gc previews without --force, like every other destructive arm.
- status reports a pinned branch index as private.
- Slot names prefix Windows device names that carry an extension.
- A slot or store named ..<name> is a legal direct child.
- Shared-store suites run in the serialized lbug-db vitest project and
  clear an inherited GITNEXUS_SHARED_STORE.
- Doc and test accuracy fixes.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(storage): pin shared-store behavior for worktrees of a bare repository (#3374)

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address second review round on the shared store (#3374)

- Reject --no-share in a linked worktree before taking any lock or
  indexing anything.
- clean --all and remove also delete each shared checkout's pointer.
- Delete an empty store only while also holding its cache lock, and
  re-check emptiness under it.
- A store pointer is trusted only when the slot's own metadata names
  this checkout; the editable pointer file just says where to look.
- Device names with an extension are prefixed on Windows only, so POSIX
  slot names stay stable.
- Test fixtures use the gitnexus-test- prefix the stale-sidecar sweep
  recognizes; help text and the private-graph label are accurate.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address third review round on the shared store (#3374)

- clean --gc never collects a slot whose index lock is held: an analyze
  holds it until it registers the checkout, so a seeded but not yet
  registered slot is busy, not orphaned.
- Reclaim compares absolute paths, so a relative GITNEXUS_HOME does not
  make live commit graphs look unreferenced.
- graphPath is followed only into a published <commit>-<featureKey>
  dir, never .publish-* staging (TS and all three hook copies).
- clean --gc fails on an unreadable stores root instead of reporting
  nothing to collect.
- --no-share help states it is for opted-in clones.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(cli): land the English --no-share help and private-graph label (#3374)

These two strings were meant for e2a9467 and d746675 but were left out
of the commit; the zh-CN side landed.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address fifth review round on the shared store (#3374)

- analyze --no-share leaves the shared store even when routed to a
  branch sub-index (gate on sharedStore, not placement.branch)
- clean --gc aborts a store whose member listing is unreadable instead
  of treating it as empty, and skips non-directory entries under stores/
- reusing an existing commit graph no longer fails a finished analyze
  when the redundant private graph cannot be wiped
- a store pointer holding JSON null, a number, a string, or an array is
  treated as invalid
- clean, remove, and DELETE /api/repo hold the checkout slot's index
  lock while deleting the slot
- the server analyze launcher waits on the checkout slot the worker
  actually writes
- sync the Factory hook copy; isolate hook tests from storage overrides;
  use a junction for the Windows worktree alias; the relative
  GITNEXUS_HOME test now sets a relative home

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address sixth review round on the shared store (#3374)

- clean, remove, and analyze --no-share remove the checkout's store
  pointer while still holding the slot's index lock, so an analyze that
  takes the lock next cannot have its new pointer deleted
- clean --gc does not follow a symlink under stores/ (lstat)
- removing a store pointer keeps the checkout's .gitnexus directory when
  it cannot be listed, instead of treating it as empty

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address seventh review round on the shared store (#3374)

- clean --gc aborts when the registry cannot be read instead of treating
  every member as orphaned; with no registry file it collects only
  members whose checkout directory is gone
- seeding from a repository-local index re-reads its metadata under the
  index lock, so the copied graph and the saved metadata match
- clean --gc skips a store another collector removed meanwhile, and
  reports "no shared stores" when stores/ holds only stray files

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address eighth review round on the shared store (#3374)

- removing a checkout's storage unregisters it and removes its store
  pointer before deleting the slot directory, which the file lock
  backend uses for its lock file; withCheckoutSlotLock becomes
  removeCheckoutStorage, used by remove, clean, and DELETE /api/repo,
  and analyze --no-share follows the same order
- the clean --gc preview skips a slot whose index lock is held, matching
  what --force would drop

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* feat(storage): share the index store between clones automatically (#3352)

Clones of one repository now share like linked worktrees. A clone whose
normalized origin URL matches another registered, still-present clone
joins that clone's store, or founds one (keyed on its own path) that the
sibling joins on its next analyze. A lone clone keeps its own .gitnexus.
Graphs stay keyed by commit and feature key, so clones only ever share a
graph built from the same commit with the same settings.

`analyze --no-share` now records a lasting opt-out (`shareOptOut` on the
registry entry, preserved across re-registration); `--share-with` clears
it. The analyze worker reports the storage it wrote over IPC so the
server settles a clone's first shared slot.

A query-time base-plus-overlay graph stays out: LadybugDB reads one
database per query. Instead, private graph copies record whether the
filesystem cloned them copy-on-write (sharing unchanged pages on disk)
or made a full copy, and `status` reports it.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): never follow a symlinked checkout .gitnexus (#3374)

A checkout whose `.gitnexus` is a symlink (e.g. `.gitnexus -> ..`) made
the shared-store pointer helpers operate on whatever it pointed at:
findLegacyLocalIndex listed the target as a "legacy index", so
`clean --local-index --force` recursively deleted the checkout's
siblings; writeSharedStorePointer wrote store.json/.gitignore there; and
removeSharedStorePointer deleted store.json there and could rm -r the
target directory.

All four now go through probePointerDir, which lstats `.gitnexus` and
accepts it only when it is a real directory whose realpath is
realpath(checkout)/.gitnexus (mirroring stale-branch-slots.ts). Anything
else is left untouched: no legacy index is reported or removed, and no
pointer is written or removed. removeLegacyLocalIndex re-probes after
sizing, just before its delete loop.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): never share a graph from a checkout that hides files (#3374)

Trigger: a sparse checkout, a skip-worktree/assume-unchanged entry, or an
uninitialized submodule leaves `git status` clean, and the run's
indexCoverage.dirtyPaths drops paths with no file hash, so publishSharedGraph
published a graph missing those files as the commit graph. seedSharedSlot
then copied the seed's lastCommit into the new pointer slot, so the next
analyze of a sibling hit the up-to-date fast path without hashing.

Fix: add isWorkingTreePristine (storage/git.ts): the unfiltered
listWorkingTreeDirtyPaths must be empty (null fails closed) and every
gitlink in the index must have a checked-out `.git`. publishSharedGraph
requires it instead of isWorkingTreeDirty. seedSharedSlot keeps the seed's
lastCommit only when the seed is at HEAD and the checkout is pristine, so a
clean sibling still fast-paths onto the shared graph; any other seeded
pointer gets an empty lastCommit, like seedFromLocalIndex, and its next run
hash-diffs, then re-points at the commit graph on publish.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): keep graphs with pending embeddings out of the shared store (#3374)

Trigger: an analyze that finished with embeddings still owed (meta carries
embeddingCheckpoint) was published as the commit graph, because the
feature key ignores the checkpoint and publish never checked it. The
published meta kept the checkpoint while the graph could never change. The
next run healed the embeddings privately, found the commit graph already
there, wiped its own healed graph and pointed back at the partial one.

Fix: publishSharedGraph treats a checkpointed graph as not shareable, so it
stays private and no published commit graph carries a checkpoint. When the
target commit graph exists but records a checkpoint, has fewer
stats.embeddings than the private graph, or has unreadable metadata, the
checkout keeps its private graph instead of re-pointing. The commit graph
is left as is because other checkouts may read it. Embeddings sync and the
server embed job already privatize a pointer slot before writing
(ensurePrivateSharedGraph).

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): rebuild a shared slot whose graph is missing (#3374)

A publish interrupted between moving the checkout's graph into
`.publish-<uuid>` staging and renaming staging onto the commit dir left
slot metadata at HEAD with no graph and no graphPath; the next reclaim
deleted the orphaned staging. The up-to-date fast path never checked that
the graph exists, so every later analyze reported "Already up to date"
over a checkout with no index. A failed restore in publishSharedGraph's
catch had the same outcome, and also deleted the staging dir holding the
only copy of the graph.

- run-analyze: for a shared-store slot, stat the graph the checkout reads
  (resolveGraphPath for the flat slot, the branch slot's own lbug
  otherwise) before the fast path; if it is missing, force a full
  rebuild. An incremental run would diff nothing into a fresh, empty
  database. Private .gitnexus indexes are unchanged: they only lose their
  graph by hand, and metadata-only fast-path fixtures rely on that path.
- publishSharedGraph: when moving the staged graph back fails and it is
  still in staging, keep the staging dir, log its path, and skip this
  run's reclaim, which would otherwise delete it. The next analyze finds
  no graph and rebuilds.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): fail safe on unreadable slot metadata during reclaim (#3374)

Trigger: reclaim counted commit-graph references with loadMeta, which
returns null for a torn or unreadable gitnexus.json as well as for a
missing one. A member whose metadata could not be read therefore
"referenced nothing", and the graph it still used was deleted. Separately,
in `clean --gc` an orphan slot that fs.rm could not delete threw out of
reclaim, aborting the collection of every store after it.

Fix: the reference loop reads slot metadata with a local loadMetaStrict.
Only absent metadata (ENOENT/ENOTDIR, same legacy-mirror fallback as
loadMeta) means no reference; any other read error or a parse failure
throws with the file path, like listDirStrict. Every caller already
treats a reclaim throw as best effort (analyze logs "skipped cleanup",
slot removal ignores it) or surfaces it (clean --gc). A failed orphan
slot delete is now kept: it stays a member, so the graph it names is
kept too, and it is reported in ReclaimResult.keptMembers and by a new
clean --gc line. loadMeta itself is unchanged.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(server): unregister under the slot lock and answer 409 on DELETE /api/repo (#3374)

DELETE /api/repo called removeCheckoutStorage(storagePath) with no
unregister callback and no checkout path, swallowed every error, and
unregistered later outside the slot lock. For a shared-store slot this
left the checkout's store.json pointer behind, let an analyze re-register
between the slot removal and the unregister, and reported {deleted} even
when the slot lock could not be taken because an analyze held it.

The handler now calls removeCheckoutStorage(storagePath,
() => unregisterRepo(entry.path), entry.path), matching `gitnexus remove`
and `gitnexus clean`, so the unregister and the pointer removal run under
the slot lock; non-shared storage is still removed, then unregistered.
The later standalone unregister is gone. An IndexLockTimeoutError answers
409 and leaves the entry registered; any other failure propagates to the
handler's 500, also with the entry kept so the delete can be retried,
instead of unregistering over leftover index files.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): give concurrent sibling clones one deterministic founder key (#3374)

Trigger: two registered clones of one origin, both still on local storage,
analyzing at the same time each saw no sibling store yet and founded a store
keyed on their own checkout path. registeredStore() then kept each clone in
its own store for good, so they never shared a graph.

Fix: when no sibling store exists, siblingCloneStore keys the new store on
the canonical path that sorts first among this clone and its registered
siblings (case-folded on Windows, like registryPathEquals), so every sibling
computes the same key. An existing sibling store still wins. Clones that
already diverged into two stores are not migrated.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): keep subdirectories of a clone out of shared stores (#3374)

Trigger: `analyze --skip-git <clone>/pkg` inside a clone with a registered
sibling of the same origin joined, or founded, a clone store. getRemoteUrl
answers from any subdirectory, so siblingCloneStore saw the enclosing
clone's remote. That broke the shared-store invariant that only tree roots
participate.

Fix: resolveOptedInStore now returns undefined for a path with no `.git`
entry. It uses hasGitDir, which accepts a directory or a linked-worktree
file, the same as resolveSharedStore's readCommonDir gate and run-analyze's
repoHasGit. `--share-with` from such a path throws a clear error.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(hooks): prefix Windows device names with an extension in hook slot names (#3374)

Trigger: on Windows, storage-slot.ts sanitizeSlotBasename prefixes a
device-name basename that has an extension (`CON.txt` -> `repository-CON.txt`),
but the hook's copy in registry-query.cjs only matched the bare device name.
With GITNEXUS_STORAGE_ROOT set, a checkout named e.g. `con.txt` got a
different slot from the hook than from the CLI, so the hook could not see its
index.

Fix: mirror the platform branch (extension form on win32, bare form
elsewhere) in all four byte-identical registry-query.cjs copies, and point
their header comments at storage-slot.ts. Add a hook-vs-TS parity test over
device-name basenames on both stubbed platforms, and fix the byte-identity
test title to say four copies.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* refactor(storage): tidy the shared-store fix series (#3374)

Explain the keptStaging early return where it is checked, reuse the
exported EmbeddingCheckpoint type in the publish test, and drop
review-step labels from test comments. No behavior change.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(storage): address ninth review round on the shared store (#3374)

- removeCheckoutStorage: keep the lock-safe order (unregister and drop the
  pointer under the slot lock, delete the slot last), but when the final
  rm fails, throw an error that says the checkout was already unregistered,
  names the leftover slot, and points at `gitnexus clean --gc --force`.
- clean --gc preview no longer sweeps staging files: acquireIndexLock
  takes `sweep: false`, which the dry-run reclaim passes.
- listStoreMetaRoots reports completeness; a store directory that cannot
  be listed (other than missing) makes the parse-cache prune retain every
  chunk instead of evicting keys other members still use.
- clean.shared.kept says "could not be removed" rather than "still open".
- ARCHITECTURE.md describes the stores/<key>/ layout and store.json
  pointer; README lists every GITNEXUS_SHARED_STORE off value and that it
  also stops clone sharing.
- Tests: close the direct Ladybug connection in finally; fix a fixture
  JSDoc.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* test(storage): pin the publish gate for cone and sparse-index checkouts (#3374)

isWorkingTreePristine already rejects every sparse mode, because each one
marks left-out entries skip-worktree and `git ls-files -v` expands a sparse
index. Only no-cone was tested; cover cone and cone with a sparse index too.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* docs(storage): name the checks that answer recurring review findings (#3374)

Comment-only. The review bot re-derives findings from the code on every
push, so put the refuting fact next to each flagged line: the pristine
check's hidden-path coverage, sparse checkouts being skip-worktree, the
lock-safe unregister-then-delete order, the hook parity test for device
names, and why the stores/ lstat is not a race guard.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-25 11:20:12 +01:00
Joseph Yared
b92c14cdd0
feat: add Factory AI (Droid) integration (#2543)
Some checks are pending
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* feat(setup): add Factory Droid (MCP + skills) to gitnexus setup

Register 'droid' in the editor-targets abstraction so `gitnexus setup -c droid`
writes the MCP server to ~/.factory/mcp.json and installs skills to
~/.factory/skills/ from the single canonical skills/ source (no per-editor
copies). uninstall.ts is target-driven, so removal is covered automatically.
Adds unit + round-trip coverage.

* feat(plugin): add gitnexus-factory-plugin for droid plugin install

* docs: add Factory Droid to editor support table and setup docs

* fix(factory-plugin): guard augment hook against fan-out and DB contention

Reuse the Claude adapter's acquireHookSlot and LadybugDB owner probe
(bundled byte-identical, kept in lockstep by a drift test) instead of
running an unguarded augment. Add direct tests for the hook and manifests.

* docs: align Factory row in editor support table

* fix(factory-plugin): honor GITNEXUS_HOOK_CLI_PATH so augment runs on Windows

* docs(hooks): point bundled guard copies at their drift tests

* docs(factory-plugin): note the Execute tokenizer's quoting limit

* docs(readme): clarify the Full tier and group the Factory row

* docs(hooks): trim drift note to a single line

* test(ci): run factory-plugin tests on the windows cross-platform lane

* refactor(hooks): drop the drift-note comments, the tests already enforce it

* fix(factory-plugin): pin CLI version and parse quoted shell patterns

- Pin mcp.json and the hook's npx fallback to gitnexus@<version> from
  the plugin manifest, registered with the release sync script so a
  mutable @latest can never execute on MCP connect or augment fallback
- Port the #2938 shell tokenizer (tokenizeShellWords + parseRgGrepPattern)
  so quoted, backslash-escaped, --regexp=, -eVALUE, and -- patterns survive
- Add the #2938 regression matrix and pin assertions to factory-plugin.test.ts

* docs: add Factory Droid to published npm README

* fix(factory-plugin): wire marketplace so droid installs the Factory plugin

Add .factory-plugin/marketplace.json sourcing ./gitnexus-factory-plugin.
Droid reads it before .claude-plugin/marketplace.json, so
`droid plugin install` now delivers the Factory plugin (Execute matcher,
pinned mcp.json) instead of the translated Claude plugin (Bash matcher,
gitnexus@latest). Register the surface in the version-sync script and
cover the wiring in the factory and sync test suites.

* fix(factory-plugin): use registry lookup for index resolution

Bundle registry-query.cjs so external indexes resolve (#3060); re-pin to 1.6.12.

* fix(factory-plugin): sync Execute parser with Cursor hook

Fixes echo-rg and -f false positives; tighten test env isolation.

* fix(factory-plugin): stop no-match augment from re-running via npx

A PATH `gitnexus` that finds no match exits 0 with empty stderr, which
fell through to a second `npx -y gitnexus@<pin> augment` with its own 8s
timeout (16s worst case vs the 10s hook budget). Fall through to npx only
when the PATH launcher is missing (ENOENT); any launched PATH binary,
including a timeout or non-zero exit, now ends the augment.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(factory-plugin): filter augment stderr to the [GitNexus] block

runAugment returned raw child stderr, so npm/Node/LadybugDB warnings leaked
into additionalContext and noise-only stderr counted as success. Port the
Claude adapter's extractAugmentContext (verbatim, with isDebugEnabled) and
apply it on every launch tier before the success decision. Adds a drift test
against the Claude copy and PATH-tier noise/noise-only behavior tests.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(factory-plugin): quote DROID_PLUGIN_ROOT in hook command

An unquoted plugin root containing spaces (e.g. a Windows user profile
path) split into multiple argv words, so the PostToolUse hook silently
never ran. Quote it like the Claude plugin does, and pin the exact
quoted command in the hooks.json wiring test.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(release): stage Factory plugin manifests in the release commit

The rc release job stages only the original four manifest surfaces in the
detached release commit, so the v<version> tag tree carried the Factory
plugin.json, mcp.json and marketplace.json at the previous version while
--check (working tree) passed. Stage them too, and guard the git add block
against the synced surfaces in sync-plugin-manifests.test.ts.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* refactor(factory-plugin): simplify hook gates, spawn tiers and tests

- main(): resolve the repo only after the tool-name and pattern gates,
  matching the Claude/Cursor hook order (skips fs/git work on no-op calls).
- runAugment(): share one spawnAugment helper between the
  GITNEXUS_HOOK_CLI_PATH and npx tiers; PATH tier ENOENT logic unchanged.
- factory-plugin test: pre-filter comment lines instead of `continue`.
- sync-plugin-manifests test: hoist EXECUTABLE_MCP_FILES and derive
  TOTAL_SURFACES from its length.
- fnSource(): throw when the function or its closing brace is not found.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(cli): list Factory Droid in localized setup help

`localizeCliHelp` overwrites the `setup` command description with the
`help.command.setup.description` i18n key, so the literal edited in
index.ts never reached `gitnexus setup --help`. Add Factory Droid to the
en and zh-CN keys.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Address PR review feedback (#2543)

- factory hook: run every augment tier under the bundled Unix timeout
  guard (npx tier group-kills), keeping exactly-one-tier fall-through
- hook-db-lock-probe: trim GITNEXUS_HOOK_{LSOF,PS}_PATH once so a padded
  override is used, not silently replaced (all 3 copies)
- hook-lock: evict a stale slot via rename-to-tombstone + identity check,
  so a concurrently recreated fresh lock is never deleted (all 4 copies)
- registry-query: a set-but-invalid storage override resolves no repo
  instead of falling back to the registry storagePath (all 4 copies)
- publish.yml: stage the ten skill mcp.json manifests in the rc release
  commit; the staging test now requires every synced surface

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Address PR review feedback round 2 (#2543)

- hook-lock: replace rename-to-tombstone eviction with an O_EXCL per-slot
  `.evicting` marker plus an identity re-check before unlink, so a live
  lock is never moved, and a crashed evictor leaves only a self-expiring
  marker (all 4 copies)
- hook-db-lock-probe: clamp GITNEXUS_HOOK_PROC_CMDLINE_MAX to a named
  256 KiB ceiling and require an integer, so an oversized override can
  no longer fail the buffer allocation and miss a live owner (all 3 copies)
- registry-query: treat an empty GITNEXUS_STORAGE_PATH/ROOT as set but
  invalid, matching the CLI's `!== undefined` rule (all 4 copies); the
  factory test env now deletes those keys instead of blanking them

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Address PR review feedback round 3 (#2543)

- hook-db-lock-probe: a capped /proc cmdline read stops early only once
  both the GitNexus token and the mcp/serve mode are present (or at EOF,
  the ceiling, or the budget), so a mode word such as `--require mcp`
  before the GitNexus path no longer hides a live owner (all 3 copies)
- registry-query: correct the override comment; a filesystem root is
  invalid only for GITNEXUS_STORAGE_PATH, not GITNEXUS_STORAGE_ROOT
  (all 4 copies, comment only)

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Address PR review feedback round 4 (#2543)

- hook-db-lock-probe: an fd-directory read error other than ENOENT or
  ENOTDIR on an identified server candidate now fails closed ('timeout')
  instead of reporting not-owned (EMFILE/ENFILE/ENOMEM/EINTR)
- hook-db-lock-probe: resolve GITNEXUS_HOOK_TIMEOUT_PATH to an absolute
  path before validating and caching it, so callers that spawn with a
  request cwd can still execute the guard
- hook-db-lock-probe: document the chunked cmdline read's actual stop
  conditions (all 3 copies)

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Harden hook-lock eviction marker lifecycle (#2543)

Per the chosen option (B) for the stale-slot eviction race:
- `.evicting` markers carry a per-call owner token (pid + random hex)
- an evictor re-reads its token immediately before the slot identity
  check and unlink; a stalled evictor whose marker was broken backs off
- `finally` removes the marker only while it still holds our token
- an orphaned marker is broken only if, re-checked just before unlink,
  its bigint identity and token are unchanged from when judged stale
- doc comment states the two remaining two-syscall windows (slot
  lstat->unlink, marker token->unlink); POSIX has no conditional
  unlink, and the worst case is one extra concurrent augment

All four byte-identical hook-lock copies updated.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Fix CodeQL file-system race in hook-lock orphan-marker check (#2543)

breakOrphanedMarker stat'd the marker by path and then read it by path,
which CodeQL flags (js/file-system-race): the file could be replaced
between the two calls. Take the stat and the token from one open
descriptor (readMarkerSnapshot, O_NOFOLLOW where available) for both the
"judged stale" snapshot and the pre-unlink re-check. All four hook-lock
copies updated.

The replaced-marker test injected its swap via a readFileSync(path) spy,
which no longer fires; it now swaps the marker just before its second
open, counting opens of the marker path only (a per-path counter fired
early on slot-0 and let a mutant pass).

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* Unregister hook-lock exit listener on release (#2543)

Each acquireHookSlot registered `release` as a process 'exit' listener
that was never removed, so a long-lived process acquiring and releasing
slots repeatedly would accumulate listeners (MaxListenersExceededWarning)
and retain every closure. release() now removes itself. All four
hook-lock copies updated; a test asserts 12 acquire/release cycles leave
the 'exit' listener count unchanged.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-24 19:12:40 +01:00
dependabot[bot]
3d24743241
chore(deps)(deps): bump lucide-react in /gitnexus-web (#3359)
Bumps [lucide-react](https://github.com/lucide-icons/lucide/tree/HEAD/packages/lucide-react) from 1.44.0 to 1.46.0.
- [Release notes](https://github.com/lucide-icons/lucide/releases)
- [Commits](https://github.com/lucide-icons/lucide/commits/1.46.0/packages/lucide-react)

---
updated-dependencies:
- dependency-name: lucide-react
  dependency-version: 1.46.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-24 08:41:50 +01:00
Gergő Magyar
084ac4514d
fix(query): send hub content once across process_symbols rows (#3356)
* fix(query): send hub content once across process_symbols rows

With include_content, a symbol in several execution flows carried its
full source text on every (id, process_id) row. Keep content on the
first row for each symbol id and omit it from later rows. Membership
fields, is_entry_point, and symbol_count are unchanged.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(query): point agents to the content row and lock the dedup in tests

The query tool text now says content is kept once per symbol id across
the whole process_symbols array, possibly under a different process_id,
and names context({uid, include_content: true}) as the fallback.

Tests: the integration suite asserts func:validate has two rows with
content on exactly one. Unit tests cover a later entry-point row that
is flagged and stripped, a hub in three processes, and that the shaper
does not mutate its input.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

* fix(query): state the content-once rule on include_content and in the query hint

The query tool's include_content property now says content is sent once
per symbol id, on its first process_symbols row, and that
context({uid: "<id>", include_content: true}) returns it for any row.
When a query asked for content, the Next hint adds that same fallback;
without include_content the hint is unchanged. The example call now
uses the "<id>" placeholder style used elsewhere in the tool text.

Tests: pin the property sentence, check the hint with and without
include_content, and cover a max_symbols slice that moves the content
row to a later process and a first row that is also the entry point.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
2026-09-24 07:58:51 +01:00
dependabot[bot]
49c37092da
chore(deps)(deps): bump zod from 4.5.4 to 4.6.5 in /gitnexus-web (#3365)
Bumps [zod](https://github.com/colinhacks/zod) from 4.5.4 to 4.6.5.
- [Release notes](https://github.com/colinhacks/zod/releases)
- [Commits](https://github.com/colinhacks/zod/compare/v4.5.4...v4.6.5)

---
updated-dependencies:
- dependency-name: zod
  dependency-version: 4.6.5
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-24 07:23:28 +01:00
dependabot[bot]
57bd9e5229
chore(deps)(deps-dev): bump tsx from 4.23.13 to 4.23.15 in /gitnexus (#3364)
Bumps [tsx](https://github.com/privatenumber/tsx) from 4.23.13 to 4.23.15.
- [Release notes](https://github.com/privatenumber/tsx/releases)
- [Changelog](https://github.com/privatenumber/tsx/blob/master/release.config.cjs)
- [Commits](https://github.com/privatenumber/tsx/compare/v4.23.13...v4.23.15)

---
updated-dependencies:
- dependency-name: tsx
  dependency-version: 4.23.15
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-24 07:23:15 +01:00
dependabot[bot]
1d79571de9
chore(deps): bump docker/setup-qemu-action from 4.3.0 to 4.4.0 (#3368)
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 4.3.0 to 4.4.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](1f40c72289...9901266195)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-version: 4.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-24 07:09:10 +01:00
dependabot[bot]
63a8dcc9b5
chore(deps)(deps-dev): bump @vercel/node in /gitnexus-web (#3363)
Bumps [@vercel/node](https://github.com/vercel/vercel/tree/HEAD/packages/node) from 5.10.2 to 7.0.0.
- [Release notes](https://github.com/vercel/vercel/releases)
- [Changelog](https://github.com/vercel/vercel/blob/main/packages/node/CHANGELOG.md)
- [Commits](https://github.com/vercel/vercel/commits/7.0.0/packages/node)

---
updated-dependencies:
- dependency-name: "@vercel/node"
  dependency-version: 7.0.0
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-24 07:08:34 +01:00