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dependabot[bot]
2ff1bf76db
chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#3345)
Bumps [@babel/generator](https://github.com/babel/babel/tree/HEAD/packages/babel-generator) from 8.0.5 to 8.0.6.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.6/packages/babel-generator)

---
updated-dependencies:
- dependency-name: "@babel/generator"
  dependency-version: 8.0.6
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-22 07:27:12 +01:00
dependabot[bot]
3f2a06a2bd
chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#3344)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.5 to 8.0.6.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.6/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-version: 8.0.6
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-22 07:26:59 +01:00
dependabot[bot]
f6d3891f3f
chore(deps)(deps): bump onnxruntime-common in /gitnexus (#3343)
Bumps [onnxruntime-common](https://github.com/Microsoft/onnxruntime) from 1.29.0 to 1.30.0.
- [Release notes](https://github.com/Microsoft/onnxruntime/releases)
- [Changelog](https://github.com/microsoft/onnxruntime/blob/main/docs/ReleaseNotesWorkflow.md)
- [Commits](https://github.com/Microsoft/onnxruntime/compare/v1.29.0...v1.30.0)

---
updated-dependencies:
- dependency-name: onnxruntime-common
  dependency-version: 1.30.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-22 07:26:26 +01:00
Nguyễn Đăng Minh Lực
5be80b1fc3
fix(lbug): self-heal read-only opens refused by an interrupted checkpoint (#3340)
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* fix(lbug): self-heal read-only opens refused by an interrupted checkpoint

Homelab repro 2026-09-19 (image 1.6.10-20260917, @ladybugdb/core 0.19.x):
a wiki pod killed mid-CHECKPOINT left the engine's checkpoint artifacts on
disk (lbug.wal.checkpoint / lbug.shadow / checkpoint intent+apply locks),
and every later READ-ONLY open refused with 'Cannot open database in
read-only mode while checkpoint is in progress' — permanently, until a
writable open (any gitnexus analyze) happened to run.

Two defects, both fixed:

1. The refusal was unclassified. ensureReadOnlyConnectionUsable (direct
   adapter) and openReadOnlyDatabase (pool) recovered missing-shadow and
   shadow-replay errors but rethrew this one raw, so 'LadybugDB
   unavailable for __wiki__' repeated forever. Add
   isReadOnlyCheckpointInProgressError (LADYBUGDB-CONTRACT, live-verified
   against 0.19.1) and route it through the same writable-open recovery —
   including at OPEN time, where the refusal fires before any probe can
   run (pool: init() moved inside the try; direct: doInitLbug catch).

2. The existing shadow-replay recovery was not durable. Reproduction
   matrix on 0.19.1: the writable probe replays the WAL in MEMORY only —
   without an explicit CHECKPOINT the engine drops the pages at close and
   the follow-up read-only open silently serves the pre-checkpoint state.
   Both recovery paths now CHECKPOINT after the probe, which applies the
   replay, consumes the sidecars, and clears the checkpoint locks.

Verified end-to-end: real engine 0.19.1, killed-mid-CHECKPOINT state →
exact refusal → pool adapter self-heals → 80,800 rows intact, sidecars
consumed. The planted-signature integration test runs on any engine
version (refusal asserted only where the engine emits it, 0.19+).

* docs(architecture): list checkpoint-in-flight artifacts and the read-path self-heal

* fix(lbug): address review findings — shared cursor closer, tighten structural guard

Both findings from the gitnexus-check review on this PR:

1. pool-adapter.ts: the recovery CHECKPOINT closed its cursor with a bare
   unawaited result.close?.(). Use the shared best-effort closer
   (closeQueryResults) the repo already funnels both adapters through, so a
   cursor-close failure stays cleanup and cannot escape as an unhandled
   rejection.

2. sidecar-recovery.test.ts: the structural regex omitted the leading
   negation, so as a substring match it also accepted the inverted
   predicate (recover ONLY shadow-replay, exclude checkpoint) — the exact
   regression the guard exists to prevent. Pin the full
   '!isReadOnlyShadowReplayError(err) && !isReadOnlyCheckpointInProgressError(err)'
   throw-through shape.

* test(lbug): wire the recovery plant into lbug-db/LBUG_NATIVE; force the refusal on any engine pin

Address the tri-review findings (all four):

P1 — the planted-signature integration test was collected by the parallel
'default' project and never by the serialized 'lbug-db' project, and
Windows/macOS CI never ran it: register it next to its sibling in
vitest.config.ts (lbug-db include + default exclude) and in
cross-platform-tests.ts LBUG_NATIVE, per TESTING.md's rule for native
@ladybugdb/core suites. Verified via 'vitest list --project lbug-db'.

P2 — on the committed 0.18.3 pin the plant passes as 'pool opens and
count(n)=300' without ever exercising the new classifier or recovery
CHECKPOINT. Add forced-refusal behavioral tests for BOTH adapters: a mocked
native layer whose first read-only Database refuses with the canonical
0.19 message, asserting the exact self-heal shape (ro-refused -> writable
open -> CHECKPOINT -> ro retry) and that a healthy db never triggers a
writable open. The direct adapter is lazy, so its refusal is scripted at
the first probe query rather than init().

P2 — the LADYBUGDB-CONTRACT header on isReadOnlyCheckpointInProgressError
claimed '^0.18.0' like its siblings; only 0.19.x emits this string (0.18.3
tolerates the state). State the first-observed version so a bump reviewer
validates the right binary.

P2 — the pool's writable replay recovery quarantined on missing-shadow
even when the error came from the post-probe CHECKPOINT, where the main
file has already changed: mirror the direct adapter's probeSucceeded guard
(replaySucceeded) and fail closed instead of parking a live sidecar.

Also assert walBuffer.byteLength > 0 in the plant so the fixture cannot
silently degrade into an empty shell on tolerant engines.

* test(lbug): fix hosted-CI failures — Windows handle release, version-gated plant, prettier

Address the CHANGES_REQUESTED review of the hosted run:

Windows blocker (Win32 Error 33, locked file region at the pooled reopen):
the fixture now makes handle release explicit — waitForFixtureRelease
probe-reads the db and its residual WAL with bounded retries after every
native close (plant, raw refusal probe, pool close), mirroring the
adapter's own Windows handle-release probing. The WAL is re-planted from
the captured bytes instead of renamed: a close-time auto-checkpoint can
consume the live .wal out from under the rename (ENOENT, second flake).

Version-gate the plant itself: on < 0.19 engines that tolerate the planted
signature, its synthetic sidecars are not a consistent staging state for
the old engine (double-apply replays surfaced as 'Person already exists in
catalog' — the third flake), and no refusal can be forced there anyway.
The plant now skips below 0.19 with that rationale in-file; the behavioral
contract on every pin stays with the forced-refusal units, and this native
suite remains registered in lbug-db + LBUG_NATIVE so Win/macOS exercise it
as soon as the pin moves off 0.18.3.

Also: prettier on the two flagged files (format gate).

* fix(lbug): keep failed checkpoint heals from re-entering CHECKPOINT

Wrap recovery failures without repeating native refusal text, skip already-wrapped errors in doInitLbug, and pin constructor-time heal plus the Windows reopen skip.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3340)

- Clean each forced-heal tmpDir in afterEach so earlier cases do not leak
- Compare major.minor when version-gating the interrupted-checkpoint plant

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3340)

Reset the pool forced-refusal mock Database sequence in native.reset() so later tests can still script the first construction as the checkpoint victim.

* Address PR review feedback (#3340)

Count every MATCH on the pool forced-refusal mock and assert the writable replay probe so CHECKPOINT-without-probe cannot stay green.

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-21 19:18:16 +01:00
Adam B.
7376347058
feat(ingestion): add tRPC procedure detection and MCP chain/route surfacing (#3339)
* feat(ingestion): tRPC pattern detection — procedures, curried calls, route extraction

Three changes to properly index tRPC router files:

1. HOC-in-pair patterns: detect procedures like
   'create: procedure.mutation(async ({ input }) => {...})'
   as named Function nodes (pair > call_expression > arguments > arrow_function)

2. Curried call detection: capture 'workflow(db)(input)' chained calls
   where call_expression.function is itself a call_expression

3. tRPC route extraction: new route-extractors/trpc.ts detects
   .query()/.mutation()/.subscription() procedures, maps to /trpc/* routes
   with prefix inference from router variable names

4. Function/Const dedup: structural check skips Const nodes when
   variable_declarator value is arrow_function/function_expression

5. Process-route linking: match by (filePath, methodName) instead of
   filePath only, preventing shared flows across procedures in same router

(cherry picked from commit eced15e60a39a181a48bff8c5bbe278d26aa53b8)

* fix(route-extractors): line-by-line scanner for chained tRPC procedures

Original regex only matched direct patterns (list: proc.query()) but not
chained patterns (create: proc.input(z.object({...})).mutation()). Only
41/256 routes were detected on Jurialis.

Rewrote extractTrpcRoutes() as a line-by-line scanner that:
- Detects procedure keys starting with *Procedure builders
- Tracks currentProcedure forward until terminal .query()/.mutation()
- Handles .input() chaining naturally
- Deduplicates via seen Set on procedurePath

Result: 245 routes from 30 routers (was 41), 256 total after re-index.
(cherry picked from commit 49edf953e93e6b67b77932e866fcbfb8d089b1f3)

* feat(mcp): expose tRPC chains via context/query tools

Eight fixes to make the tRPC route->procedure->workflow->sub-workflow chain
visible through the standard MCP tools (context, query) that AI agents use,
instead of requiring raw Cypher queries.

- A context: order incoming/outgoing CALLS test-last, raise LIMIT 30->100
- B query: batched ENTRY_POINT_OF lookup, surface route URL on processes
- C query: mark process_symbols entry point with is_entry_point=true
- D entry-point-scoring: skip UTILITY_PATTERNS (get*/set*) penalty for
  symbols in tRPC router files so framework boost (3.0x) is preserved
- E fts-schema: index Route nodes so /trpc/* URLs are keyword-searchable
- F tools: bump max_symbols default 10->25 to fit procedure->workflow chain
- G context: optional chain_depth (0-3) param walks CALLS edges in both
  directions and returns layered chain field
- H LadybugDB bug workaround: WHERE r.type IN [...] silently drops edges
  on relationship properties; replace with OR chains (7 occurrences in
  local-backend.ts, pdg-impact.ts, graph-queries.ts)

Validated on Jurialis: setProviderCap procedure now appears as caller of
setProviderCapWorkflow, /trpc/cabinet.setProviderCap Route is searchable,
chain_depth=3 returns the layered call graph.

(cherry picked from commit c24df0adce91e80f191a5c5d2e8b14e9da677366)

* feat(mcp): surface is_entry_point + routes in context, raise query limit

context() is the mandatory pre-edit tool (AGENTS.md). Until now an agent
had to issue a separate query() call just to learn whether its symbol is
a process entry point or which HTTP route it handles. These two fields
make context() self-sufficient for the bmad-dev flow.

- context: query STEP_IN_PROCESS now returns p.entryPointId; new
  ENTRY_POINT_OF lookup attributes routes only from processes where the
  symbol is the entry point (middle steps do not own the route) plus any
  direct Route->symbol handler edge (tRPC procedures outside any Process)
- context: new top-level is_entry_point (true only) and routes[] fields
  ({url, method?}), emitted only when non-empty to keep the diff additive
- query: raise default limit 5->10 so dense domains (tRPC action router
  with 20 chains, data-export with 9 flows) surface more of their flow
  set without an explicit param

(cherry picked from commit 004f5b0ba985fcef3dfac5e67a2f2f7262184215)

* docs(mcp): document chain_depth, routes, and entry-point flag; neutralize examples in comments

* fix(mcp): address code-review findings on tRPC entry points, queries, and dispatch

- entry-point scoring: optional-chain framework detection and normalize
  path separators before router-pattern matching (P1 crash on .js routers)
- tRPC extractor: emit controllerName as null (callers resolve via
  lookupClassByName; a router object stringified as name corrupted lookups)
- route dedup: key seenRoutes by method:url so GET/POST pairs survive
- legacy TS queries: drop curried-call patterns (arity-corrupting for
  overload resolution) and require non-array callee on pair member calls
- registry-primary TS query: mirror the non-array-callee predicate on the
  new pair member-expression patterns (fixes query compile error)
- group tool port: forward chain_depth into per-tool context args

* fix(mcp): nested tRPC router paths, controller-less route binding, query chain_depth

- trpc extractor: brace-depth nesting stack composes sibling router paths (bare router() import style included); merge-prefix dot normalization; strict publicProcedure allowlist gate; drop phantom router metadata

- call-processor: bind controller-less tRPC routes to same-file handlers via exact single-match symbol lookup; ambiguous or missing handlers skipped

- query/group query: optional chain_depth (0-3) enriches ranked processes with their context chain; fix _computeContextChain layer docstring

- tree-sitter TS/JS scope queries capture string-key function declarations; tRPC pattern scoring narrowed to server router files

- parse-cache schema bump to v103 for extractor and route-binding changes

- add trpc route extractor regression tests (9 cases incl. sibling nesting and merge prefix)

* Address PR review feedback (#3339)

Close remaining review threads: compact tRPC keys, comment-safe terminals,
quoted-key identifier HOC captures, group-query default alignment, and
LadybugDB label scalars on context chains.

* chore(autofix): apply prettier + eslint fixes via /autofix command

* test: pin PARSE_CACHE schema bump to 103 (PR #3339 review fixes)

* fix(ingestion): bind same-name tRPC handlers and surface HANDLES_ROUTE

Same-name procedures resolve by startLine, the extractor keeps nested paths
through multiline schemas, and context/query UNION HANDLES_ROUTE for leaf
procedures that never become Process entries.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Clamp group query bounds, drop HOC pair false positives, emit tRPC
terminal lines and hyphenated quoted keys, cap chain BFS concurrency,
and restrict the router utility exemption to accessor names.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Score JS/JSX tRPC routers like TypeScript, ignore inner db.query and
unrelated .merge calls, mask regex braces, and assert clamp tests invoke
the query mock.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(ingestion,mcp): emit-side HOC callback guards + MCP schema prettier (PR #3339 round 2)

* Address PR review feedback (#3339)

Treat `/` after return-style keywords as a regex, drop the synthetic
appRouter path prefix, and bind the create mutation via an inline callback.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Qualify query() docs so is_entry_point is promised only when the entry
symbol is among the search hits.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Emit tRPC terminals only at procedure paren depth, drop the filename
prefix on bare appRouter = router(), mask regex after if (), and cap
groupQuery member fan-out.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

De-duplicate context-chain BFS nodes reached through multiple frontier
edges, and bind tRPC identifier callbacks (`.mutation(handler)`) to the
handler symbol instead of the procedure key.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Apply LIMIT 50 after DISTINCT neighbors in the context-chain BFS, and
treat the official lowercase `procedure` builder as a tRPC procedure key.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Keep the later duplicate tRPC object-literal key so route binding matches
the handler JavaScript actually ships.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Compose same-file identifier-mounted tRPC subrouters so admin: adminRouter
emits the live admin.list path instead of an unprefixed /trpc/list.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Memoize tRPC identifier-mount paths so a depth-N chain stays linear, and
gate it with the build-free measure.mjs / baselines.json harness.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Compose identifier mounts without phantom /trpc URLs, bind wrapped and
multiline handlers, fail-close missing bench budgets, and reject query
page bounds before search.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Reject advertised MCP query bounds in group mode and chain_depth
instead of clamping or accepting non-integers.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Reject invalid groupContext chain_depth and ignore non-callable
same-file tRPC handler candidates.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Memoize live tRPC mount paths so the depth-N chain bench stays linear,
and render invalid group/MCP bounds without throwing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Keep t.merge('prefix.', namedRouter) procedures live by recording a
zero-hop mount so the unmounted-router drop does not hide them.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Recognize type-annotated `const adminRouter: AppRouter = t.router(`
bindings so identifier mounts still compose.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-21 09:44:42 +01:00
Gergő Magyar
620fd18a5c
feat(cli): reclaim leftover per-branch indexes after branch delete (#3338)
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* feat(storage): classify leftover per-branch index slots

Operators need a shared enumerator for deleted-branch leftovers before clean --stale or doctor can reclaim or report them.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(storage): reclaim a per-branch slot and empty branches/

Named clean --branch now shares one rm-then-registry helper so the last leftover slot can drop the empty branches directory, and a failed rm still keeps the retryable summary.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(cli): add clean --stale to reclaim leftover branch indexes

Operators can drop per-branch slots whose recorded branch is gone without remembering each name, while a git-list failure stays a no-op.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(cli): report leftover branch indexes in doctor

Operators can see cwd orphaned per-branch slots and their size, then reclaim them with clean --stale, without doctor deleting anything.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): keep unreadable branch slots out of stale reclaim

A stat error other than ENOENT/ENOTDIR must not look like a missing
directory, or clean --stale --force drops the registry row and leaves
the slot on disk.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(cli): keep leftover-slot display helpers in the CLI layer

Preview and doctor share one size formatter and an i18n path for
registry-only rows, so storage no longer owns display copy.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): keep leftover reclaim moving after a registry drop failure

Catch removeBranchIndex rejections so --stale continues, match doctor
registry rows through canonicalizePath, and size leftover slots sequentially.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): match leftover-slot registry rows with canonicalizePath

Use the repo-manager path contract so clean --stale and --branch still
see registry-only leftover rows when cwd and the stored path differ.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): contain leftover-slot deletes and re-check live heads

Refuse symlink and junction escapes under branches/, unlink slot links
instead of removing through them, and skip --stale --force when a name
is a local head again.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

- Bound listLocalHeads spawnSync with GIT_PATH_LIST_MAX_BUFFER.
- Clarify that doctor leftover reporting is cwd-only, not registry-wide.
- Drop the MCP/serve assumption from clean --stale delete failures.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

- Describe disk-only leftover slots in --stale help, not only recorded branches.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(cli): stop doctor reclaim copy when heads cannot be listed

Doctor was naming clean --stale for leftover rows even when git cannot
list local heads, which is a no-op. Print the retry-git message instead (#3337).

Co-authored-by: Cursor <cursoragent@cursor.com>

* revert: drop Unreleased changelog notes from this branch

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(cli): keep live branch pins when a tag shares the name

%(refname:short) disambiguates against tags, so clean --stale treated
still-local heads as leftover. Fail closed on obstructed slots and
unlistable branches/ directories.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

Bound leftover-slot listing, revalidate paths immediately before delete, and keep registry rows when a stray disk-only directory claims a recorded branch.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-20 16:03:18 +01:00
Abhigyan Patwari
b888260a86
Update project title in README.md
Removed the 'Akon Labs' reference from the project title in README.
2026-09-20 17:10:40 +05:30
Ahmad Othman Ammar Adi
5d32e345bb
feat(web): drop a folder onto the analyzer to upload it (#3315)
* feat(web): drop a folder onto the analyzer to upload it

The Local Folder panel of RepoAnalyzer is now a drop target. A dropped
folder is walked with the File and Directory Entries API
(DataTransferItem.webkitGetAsEntry), directories on the shared exclusion
list are pruned before they are read, and the resulting File objects are
handed to the existing filterRepoFiles -> uploadFolder -> trackJob path
with webkitRelativePath set to <folder>/<rest>, so the server receives the
same manifest shape the webkitdirectory picker produces.

Compared with the picker, the walk never enumerates node_modules or .git,
stops at the server's 20000 file cap and 64 path segments, skips
unreadable entries instead of failing, and reports progress while it runs.
Loose files and several folders at once are refused with a message (the
server accepts one top-level folder). The walk runs under the request
controller, so a mode switch or unmount aborts it; Analyze and the picker
are blocked while it runs. The panel-wide target also stops the browser
from navigating to a file dropped a few pixels off the button.

New strings in en and zh-CN; browsers without webkitGetAsEntry keep the
picker button and get an explanation.

* Address PR review feedback (#3315)

Clear readingCount only when this drop still owns the request controller, and skip oversized files before they count toward the 20k drop cap.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3315)

Count oversized files the drop walk skips in the summary droppedCount, and correct the 250-file batch-read comment.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-20 10:12:54 +01:00
Parafee41
ee2feb7a5b
fix(cli): announce explicit registry alias changes (#3334)
* fix(cli): announce explicit registry alias changes

* fix: handle async rename observer failures

* Address PR review feedback (#3334)

- Invoke onRename after withRegistryLock releases so observer I/O cannot stall the registry
- Spy the rejecting observer and prove lock release via re-entrant registerRepo

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-20 08:28:28 +01:00
Twisted_Arrow
dcb2eb5cb4
fix(swift): resolve imports from Package.swift targets, not path segments (#3105)
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* fix(swift): match repeated SPM target prefixes

* test(swift): cover repeated SPM target prefixes

* test(swift): cover valid prefix before later partial match

* docs(swift): clarify target grouping parity scope

* docs(swift): clarify target grouping parity scope

* docs(swift): clarify target grouping parity scope

* fix(swift): resolve imports from Package.swift targets, not path segments

Stop fabricating IMPORTS from import Foundation onto a same-named folder.
Declare modules from Package.swift when the manifest is usable; keep
Sources/* for grouping and fail-open folder resolve minus SDK names.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep empty Package.swift declarations and nested .target() deps external

An inferred Sources/* folder is grouping-only. A dependency .target(name:) is not a module. Treat both as unresolved so import Foundation cannot bind to a decoy folder.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep implicit IMPORTS intra-group and gate linear Package.swift resolve

@_exported must not paint sibling files as implicit imports. A dedicated
bench pins declaration-only resolve and (t_4n/t_n)/4 linearity.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Honor member-only @_exported imports, skip comments while scanning
Package.swift factories, fail-open mixed helper-built target lists, and
block CoreData/CoreGraphics decoy folders on the inferred path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Match path: "." as the package root, skip block-commented Package.swift
factories, read import kind from the clause only, and skip capture tests
when the optional Swift grammar is missing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): scan Swift import-kind without nested regex backtracking

CodeQL js/redos flagged the comment-skipping IMPORT_KIND_RE; a linear walk keeps the same kind tokens.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): linear Package.swift factory scan and gate Swift context

parseSwiftPackageManifest re-walked every prefix for comments (O(n²) in factory count). Resume the scan and cover nested factories in one pass. Wire Swift into the import-target context arm now that resolveImportTarget is 5-arg.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Tighten Package.swift and import-text scanners: skip comments/strings, reject escapes, treat ident + [ as incomplete, and drop the unused factory-comment wrapper.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): prettier the @_exported availability fixture

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Judge Package.swift completeness from Package(...)'s own targets: argument instead of raw-text regexes, nest block comments when reading an import kind, and strip leading ./ from declared target paths.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Collect Package.swift factories only from Package(targets: [...]), fail-open on computed array elements, and treat // after a label colon as a comment.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Ignore stray factories when Package() exists but omits targets:.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Require the Package-scan seen box so the always-true undefined guard goes away.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-19 15:50:31 +01:00
azizur100389
a578747455
fix(swift): resolve nested constructors in extensions (#3308)
* fix(swift): resolve nested constructors in extensions

* fix(swift): preserve qualified extension owners

* Address PR review feedback (#3308)

Recover qualified Swift extension owners through public / attribute prefixes, and stop last-dot-guessing when source text is present.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep attribute text from stealing extension owners

Bound header recovery so @available messages cannot rekey a fragment, and still inject nested types when the Class scope has no bindings.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): nest comments and keep the public extension fixture valid

Review follow-up: skip nested /* */ in the header scan, put the Inner.Entry decoy in a parsed file, and mark Outer/Container/Entry public so the live fixture is valid Swift.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): recover Unicode identifiers as extension owners

The header regex was ASCII-only, so extension Café.Container keyed as Caf and dropped nested-type siblings. Match ID_Start/ID_Continue segments instead.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): skip raw strings and decode UTF-8 scope columns

Header recovery treated #"..."# as an ordinary quote and sliced Tree-sitter byte columns as JS offsets, so a same-line Café prefix or a raw attribute message could steal or drop the extension owner.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-19 09:46:53 +01:00
dependabot[bot]
8fcc54e15f
chore(deps): bump the uv group across 1 directory with 2 updates (#3330)
Bumps the uv group with 2 updates in the /eval directory: [anyio](https://github.com/agronholm/anyio) and [pygments](https://github.com/pygments/pygments).


Updates `anyio` from 4.12.1 to 4.14.2
- [Release notes](https://github.com/agronholm/anyio/releases)
- [Commits](https://github.com/agronholm/anyio/compare/4.12.1...4.14.2)

Updates `pygments` from 2.19.2 to 2.20.0
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.19.2...2.20.0)

---
updated-dependencies:
- dependency-name: anyio
  dependency-version: 4.14.2
  dependency-type: indirect
  dependency-group: uv
- dependency-name: pygments
  dependency-version: 2.20.0
  dependency-type: indirect
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-19 09:44:33 +01:00
Parafee41
795cf0e151
fix(swift): resolve inherited protocol extension calls (#3309)
* fix(swift): resolve inherited protocol extension calls

* fix(scope): gate inherited implicit receiver lookup

* fix(swift): resolve call result types by exact callee

* test(swift): align cache and local call expectations

* fix(scope): reconcile replay diagnostics

* fix(swift): preserve exact callable return types

* fix(swift): capture throwing async call results

* test(swift): refresh capture golden

* test(swift): refresh scope capture baseline

* fix(swift): require explicit callable returns

* fix(scope): preserve duplicate return metadata

* chore(scope): align index documentation

* Address PR review feedback (#3309)

Stamp only protocol/class-extension members (nested QN + SPM buckets),
arity-narrow implicit-this across MRO, and keep Swift type peeling out
of shared workspace-index via stripTypePreservingDecoration.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3309)

Stamp extension members even when the extension declares a nested type, keep inherited class members ahead of protocol-extension defaults, and report replay-only interface-dispatch fan-out drops.

Note: pre-existing failure in gitnexus tsc against an older gitnexus-shared dist not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3309)

Walk inherited implicit-this owners nearest-first so a nearer override wins, and tighten Swift owner-stamp tests.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-19 07:44:35 +01:00
dependabot[bot]
f465f6fb92
chore(deps)(deps): bump proxy-addr from 2.0.7 to 2.0.8 in /gitnexus (#3329)
Bumps [proxy-addr](https://github.com/jshttp/proxy-addr) from 2.0.7 to 2.0.8.
- [Release notes](https://github.com/jshttp/proxy-addr/releases)
- [Changelog](https://github.com/jshttp/proxy-addr/blob/master/HISTORY.md)
- [Commits](https://github.com/jshttp/proxy-addr/compare/v2.0.7...v2.0.8)

---
updated-dependencies:
- dependency-name: proxy-addr
  dependency-version: 2.0.8
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-19 07:43:35 +01:00
Gergő Magyar
ba39d5c009
feat(analyze): expose process-detection budget overrides (#3324)
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* feat(analyze): expose process-detection budget overrides (#3313)

Operators can raise or lower process count, branching, trace depth, and the entry-point candidate pool via CLI, .gitnexusrc, or GITNEXUS_* without changing shipped defaults. A budget-only change re-detects flows on the next analyze without --force.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): say invalid budget flags still honor env

A rejected --max-processes value was described as falling back to the built-in default even when GITNEXUS_MAX_* still won the next precedence tier.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(analyze): share process-detection defaults and skip unused walks

Keep DEFAULT_CONFIG aligned with the budget resolver and count symbols only when maxProcesses is still dynamic.

Co-authored-by: Cursor <cursoragent@cursor.com>

* style(analyze): wrap process-detection budget files for prettier

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(analyze): name the real process-detection default formula

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(analyze): stop calling maxProcesses*2 a hard trace quota

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): say invalid env budget tokens fall back to defaults

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): recertify process-detection after in-place FTS abort (#3324)

Persist processDetection.uncertified on the in-place FTS dirty stamp when
the budget mismatched so a flagless retry cannot keep rewritten flows.
Qualify .gitnexusrc fail-fast copy and tighten related tests.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): skip live dirty stamp on atomic incremental (#3324)

POSIX atomic incremental mutates a staging copy, so stamping live incrementalInProgress before swap made a crash force-rebuild a healthy index. Align analyze --help with CLI > .gitnexusrc > env > default.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(changelog): drop the atomic-incremental dirty-stamp note

The code fix stays; Unreleased no longer lists that recovery change.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): survive FTS SIGSEGV in --limit e2e

CREATE_FTS_INDEX can kill the setup analyze on some WSL hosts
(status null). Rebuild with --skip-fts and skip BM25-only
query --limit cases unless GITNEXUS_REQUIRE_FTS=1.

Refs #3324

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): mark update-check child at import

Writing refresh-started from fetch() raced a 30s poll against
cold tsx boot on a loaded default-project worker.

Refs #3324

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3324)

Isolate default-budget FTS crash-marker tests from GITNEXUS_MAX_* env, assert uncertify-before-FTS order and deferred flow detection on park recovery, drop the dangling "then" from entry-point help, and correct stale streamGraphEmit docs without skipping the process-detection stamp.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(changelog): drop Unreleased process-detection notes

Keep the #3313 / #3322 code; Unreleased changelog matches main until release.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-18 13:37:15 +01:00
Gergő Magyar
9d95af9fc3
refactor(analyze): move detected-branch sanitization off CLI config (#3325)
* refactor(analyze): load detected-branch sanitization from core git-ref

Keep the never-throw helper next to validateBranchName so run-analyze no longer imports CLI config parsing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): warn once when a checkout name cannot label the index

After the write lock settles, emit a single onLog warning and keep writing the workspace slot. Pin that run-analyze does not import CLI analyze-config.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): escape hidden checkout names in the detect-reject warning

Keep the rejected ref visible in onLog without replaying bidi or quote characters, and document that sanitizeDetectedBranch rethrows unexpected errors.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): keep detect-reject warnings on one line (#3325)

Git-legal U+2028/U+2029 checkout names were rejected as whitespace but left raw in the new onLog warning, so the message split across two lines. Escape those code points in the formatter without changing validateBranchName.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(analyze): keep C1 and Unicode spaces in detect-reject warnings

Escape NEL and remaining whitespace as \uXXXX so stripControlCharacters cannot drop or disguise the rejected checkout name.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-18 11:03:24 +01:00
dependabot[bot]
9a68183c99
chore(deps)(deps): bump react and @types/react in /gitnexus-web (#3299)
* chore(deps)(deps): bump react and @types/react in /gitnexus-web

Bumps [react](https://github.com/react/react/tree/HEAD/packages/react) and [@types/react](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/react). These dependencies needed to be updated together.

Updates `react` from 19.2.8 to 19.3.0
- [Release notes](https://github.com/react/react/releases)
- [Changelog](https://github.com/react/react/blob/main/CHANGELOG.md)
- [Commits](https://github.com/react/react/commits/v19.3.0/packages/react)

Updates `@types/react` from 19.2.18 to 19.3.0
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/react)

---
updated-dependencies:
- dependency-name: "@types/react"
  dependency-version: 19.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
- dependency-name: react
  dependency-version: 19.3.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* chore(deps): align react-dom and @types/react-dom to 19.3.0

react-dom@19.2.8 peers react@^19.2.8, which excludes 19.3.0. Pair the remaining packages so the Dependabot bump is installable.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-18 07:43:50 +01:00
dependabot[bot]
e3f8fefd5f
chore(deps)(deps-dev): bump vite from 8.1.5 to 8.3.0 in /gitnexus-web (#3320)
Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 8.1.5 to 8.3.0.
- [Release notes](https://github.com/vitejs/vite/releases)
- [Changelog](https://github.com/vitejs/vite/blob/main/packages/vite/CHANGELOG.md)
- [Commits](https://github.com/vitejs/vite/commits/create-vite@8.3.0/packages/vite)

---
updated-dependencies:
- dependency-name: vite
  dependency-version: 8.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-18 06:10:05 +01:00
dependabot[bot]
9a692d4957
chore(deps)(deps): bump lucide-react in /gitnexus-web (#3319)
Bumps [lucide-react](https://github.com/lucide-icons/lucide/tree/HEAD/packages/lucide-react) from 1.31.0 to 1.44.0.
- [Release notes](https://github.com/lucide-icons/lucide/releases)
- [Commits](https://github.com/lucide-icons/lucide/commits/1.44.0/packages/lucide-react)

---
updated-dependencies:
- dependency-name: lucide-react
  dependency-version: 1.44.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-18 06:09:53 +01:00
dependabot[bot]
4efe3e34f5
chore(deps)(deps-dev): bump @testing-library/jest-dom in /gitnexus-web (#3318)
Bumps [@testing-library/jest-dom](https://github.com/testing-library/jest-dom) from 7.0.0 to 7.0.1.
- [Release notes](https://github.com/testing-library/jest-dom/releases)
- [Changelog](https://github.com/testing-library/jest-dom/blob/main/CHANGELOG.md)
- [Commits](https://github.com/testing-library/jest-dom/compare/v7.0.0...v7.0.1)

---
updated-dependencies:
- dependency-name: "@testing-library/jest-dom"
  dependency-version: 7.0.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-18 06:09:21 +01:00
dependabot[bot]
4fd0e8c5d1
chore(deps)(deps-dev): bump @playwright/test in /gitnexus-web (#3317) 2026-09-18 05:30:49 +01:00
Gergő Magyar
56feb85c97
chore: compile first-party packages with TypeScript 7 (#3311)
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* fix(web): drop TypeScript 7-incompatible tsconfig paths

Remove baseUrl and the dead ../shared include so web project references typecheck under TypeScript 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): parse TypeScript with a TypeScript 6 API package

Keep AST guards working after the named typescript package becomes 7, which no longer ships the Compiler API.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(lint): pin root TypeScript to the 6 API package

Give typescript-eslint a TypeScript 6 peer so syntax-only lint still installs after CLI and web move to TypeScript 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(deps): compile first-party packages with TypeScript 7.0.2

Unify CLI and web on the same native compiler line as gitnexus-shared so typecheck and emit no longer split 5.x versus 7.x.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(ci): describe parent TypeScript 7 as the shared compiler

Stop saying web compiles shared with TypeScript 5 now that the parent lockfile is 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): compile shared from parent TypeScript on Vercel and skill-evolution

Stop isolated npm installs in gitnexus-shared so those paths do not pull a second TypeScript 7 optional-platform tree.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs: record TypeScript 7 typecheck and Dependabot major-split policy

Keep contributor typecheck commands, and stop Dependabot from bumping shared onto a different TypeScript major than CLI and web.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lint): pin root TypeScript to 5.9 so npm ci satisfies eslint peers

typescript-eslint 8 peers typescript below 6.0.0, so the typescript6 alias made quality lint npm ci fail with ERESOLVE.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): drop the TypeScript 6 Compiler API package

TypeScript 7.0 has no classic createProgram surface, so parse-only
guards now use Babel and Mode 4 uses the TypeScript 7 Checker.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs: align contributor setup with parent TypeScript 7 compile

Stop telling clones to npm-install gitnexus-shared; CI and Vercel already emit that package from a parent lib/tsc.js shim.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(web): typecheck React JSX on TypeScript 7 with explicit DOM libs

TypeScript 7 no longer implies DOM or auto-includes @types, so the web app must declare React/JSX settings while Vite keeps plugin-react.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test: pin Vercel --include=dev and share parse-only string helpers

Production npm ci omits the web TypeScript unless --include=dev is on that install. Move staticStringValue next to the other Babel walk helpers so CLI help and contract tests share one source.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-17 22:16:00 +01:00
Gergő Magyar
a2e1710ac0
fix(embeddings): stop Caching embeddings OOM on large incremental analyze (#3310)
* fix(embeddings): spill cached vectors to a Float32 temp file

Keep restore metadata in RAM and write embeddings once the in-memory
row limit is exceeded so incremental analyze can survive large caches
without a full-table number[] heap (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): stream CodeEmbedding cache under the connection lock

Spill vectors once the in-memory limit is crossed and fail the load
instead of adopting an empty snapshot, so incremental analyze cannot
OOM or quietly drop the restore cache (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): restore cached embeddings from a streamed spill snapshot

Hold row metadata across wipe, materialize 200-row batches, and treat
cache-load failures as warn-and-continue so incremental analyze can
preserve vectors without a full-table heap (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Loop spill writes until the full vector lands, keep materialize failures out of the insert catch and the Phase 4 hash skip-set, and assert spilled restore subsets by node id instead of scan order.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Discard only this analyze run's embedding spills so a concurrent analyze on another index keeps its restore file, and isolate the default in-memory limit test from inherited env.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Mark a node stale when any restore batch fails so leftover chunks are deleted and rembedded, and exercise a full-length bad-magic spill header.

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-17 16:18:29 +01:00
dependabot[bot]
d2a43e33df
chore(deps): bump the codeql-action group with 3 updates (#3305)
Bumps the codeql-action group with 3 updates: [github/codeql-action/init](https://github.com/github/codeql-action), [github/codeql-action/analyze](https://github.com/github/codeql-action) and [github/codeql-action/upload-sarif](https://github.com/github/codeql-action).


Updates `github/codeql-action/init` from 4.37.9 to 4.38.0
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](cdf488f595...b96794f015)

Updates `github/codeql-action/analyze` from 4.37.9 to 4.38.0
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](cdf488f595...b96794f015)

Updates `github/codeql-action/upload-sarif` from 4.37.9 to 4.38.0
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](cdf488f595...b96794f015)

---
updated-dependencies:
- dependency-name: github/codeql-action/init
  dependency-version: 4.38.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: codeql-action
- dependency-name: github/codeql-action/analyze
  dependency-version: 4.38.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: codeql-action
- dependency-name: github/codeql-action/upload-sarif
  dependency-version: 4.38.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: codeql-action
...

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Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-17 07:44:09 +01:00
dependabot[bot]
a67e74cdb6
chore(deps)(deps): bump js-yaml from 5.4.1 to 5.4.2 in /gitnexus (#3304)
Bumps [js-yaml](https://github.com/nodeca/js-yaml) from 5.4.1 to 5.4.2.
- [Changelog](https://github.com/nodeca/js-yaml/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nodeca/js-yaml/compare/5.4.1...5.4.2)

---
updated-dependencies:
- dependency-name: js-yaml
  dependency-version: 5.4.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2026-09-17 07:06:03 +01:00
dependabot[bot]
f90ae7dcb2
chore(deps)(deps): bump @langchain/google-genai in /gitnexus-web (#3303)
Bumps [@langchain/google-genai](https://github.com/langchain-ai/langchainjs) from 2.2.0 to 2.3.1.
- [Release notes](https://github.com/langchain-ai/langchainjs/releases)
- [Commits](https://github.com/langchain-ai/langchainjs/compare/@langchain/google-genai@2.2.0...@langchain/google-genai@2.3.1)

---
updated-dependencies:
- dependency-name: "@langchain/google-genai"
  dependency-version: 2.3.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2026-09-17 07:05:46 +01:00
dependabot[bot]
a7606021c9
chore(deps)(deps): bump @langchain/openai in /gitnexus-web (#3302)
Bumps [@langchain/openai](https://github.com/langchain-ai/langchainjs) from 1.5.3 to 1.5.13.
- [Release notes](https://github.com/langchain-ai/langchainjs/releases)
- [Commits](https://github.com/langchain-ai/langchainjs/compare/@langchain/openai@1.5.3...@langchain/openai@1.5.13)

---
updated-dependencies:
- dependency-name: "@langchain/openai"
  dependency-version: 1.5.13
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2026-09-17 07:05:30 +01:00
dependabot[bot]
d2f10f3924
chore(deps)(deps-dev): bump @types/node in /gitnexus-web (#3300)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 26.0.1 to 26.5.1.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node)

---
updated-dependencies:
- dependency-name: "@types/node"
  dependency-version: 26.5.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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2026-09-17 07:05:13 +01:00
dependabot[bot]
72556b0f79
chore(deps)(deps-dev): bump @babel/types in /gitnexus-web (#3298) 2026-09-17 05:53:32 +01:00
Matt
8b21ce3b95
feat(auto-sync): preserve PDG indexes across updates (#3290)
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* feat(auto-sync): preserve PDG indexes across updates

* docs(auto-sync): document durable PDG synchronization

* Address PR review feedback (#3290)

- Correct requestedPdg state docs for threshold-skipped syncs
- Defer coalesced follow-up and skip failure-threshold counts for leftover-worker / retryable lock waits
- Document the pdg tri-state and caveat the 30m/5m example

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): raise Windows Ladybug #605 hang budget off the CI tail

Windows 3/3 typically finishes this native race in ~15s but has a 56s tail; 60s false-positives as deadlock. Keep the POSIX 60s detector and the completion/.shadow/row-count contract.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-16 20:12:45 +01:00
Abhinav Pandey
0ede6ae501
fix(rust): respect Cargo target boundaries in name fallback (#3294)
* fix(rust): respect Cargo target boundaries in name fallback

* fix(rust): read Cargo sources through validated file descriptors

* fix(rust): require matching imports for crate-root guesses

* fix(rust): require Cargo root identity for cross-target imports

* fix(rust): enforce Cargo identity across fallback imports

* fix(rust): keep Cargo membership on typical derive/macros (#3294)

Abort only genuine unknown expansion, ignore Cargo artifact layouts instead of every `target` path segment, and require a covering import for unanswered crate-root name fallback so #3253 still holds on ordinary Rust sources.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(rust): gate Cargo target membership in CI (#3253)

Add a parse-dispatch-rounds-style bench so derive/macro abort, target-path globs, and superlinear membership walks fail in CI instead of staying graph-invisible.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(rust): verify Cargo macro and re-export evidence

* style(bench): format Cargo membership benchmark

* fix(rust): require imports for cross-file root guesses

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-16 11:36:07 +01:00
Gergő Magyar
ebbcd5b0b4
fix(mcp): name the indexed ref on hot read tool staleness (#3291) (#3293) 2026-09-16 07:29:04 +00:00
dependabot[bot]
66421ef42f
chore(deps)(deps-dev): bump @types/node in /gitnexus (#3297) 2026-09-16 06:08:57 +01:00
Gergő Magyar
ac9a4e9abd
fix(embeddings): keep ONNX off the install and analyze critical path (#3287)
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* fix(embeddings): isolate local ONNX inference in a child_process sidecar

The analyze parent must not load onnxruntime-node. Fork a sidecar for
vectors only and reap it on worker exit; keep Ladybug writes in-process.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): share the sidecar client across MCP, serve, and sync

Query hosts now use the core façade instead of a second in-process ONNX
embedder. Search skips an empty table, sync reaps beside closeLbug, and
ready means the stack is resolvable rather than a warm singleton.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): refuse Intel Mac and unloadable prefix before npm heal

Analyze, sync, install, and the sidecar client now consult the platform
blocker before forking or downloading the optional stack. HTTP stays the
escape hatch; wasm is not treated as a rescue.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): take the ONNX stack off default npm install

Pins live in gitnexusEmbeddingStack. embeddings install writes prefix
overrides before npm spawn. Leftover 1.6.12 package-first trees are residual.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(publish): drop grammar source from the published tarball

Every vendored grammar has 6/6 prebuilds, so files ships those plus
Leiden and FTS instead of parser.c. First ship stays above 80 MiB.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): match MCP missing-stack warn to the R20 copy

Default install no longer calls the stack optional, so the once-per-backend
stderr assertion must look for the new lead line.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): bound sidecar death, cancel writes, and publish-file guards

Init-time native crashes no longer respawn a child on every query. Local
embedBatch honors AbortSignal after sidecar return, MCP query() surfaces
vector-lane degradation, disconnect always reaps, and the grammar prepack
guard checks files globs instead of on-disk prebuilds.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(embeddings): share runtime preflight and sidecar reap helpers

Analyze and embeddings-sync used the same blocker/prefix/install gate
with different error routing. One assessment keeps those paths aligned
without changing CLI vs thrown-error behavior.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3287)

Keep a reaped sidecar from resetting its replacement, wait for dispose,
tighten the publish-files guard, and stop assuming a leftover ONNX tree in CI.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Clear the sidecar reap timeout, add init IPC slack, and isolate embeddings-sync tests from HTTP-mode env.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): unstub globals after sidecar HTTP-mode tests

Keep a leaked fetch stub from failing assertions out of later tests in the same file.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): pin sidecar success cases off darwin/x64

The runtime blocker reads the real process platform before the fork mock, so local-success tests must not inherit an Intel Mac host.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Keep vector degradation per query, treat leftover Intel-Mac stacks as not ready, and document that the CLI image no longer ships ONNX.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Simplify embedding sidecar shutdown and search hot paths

Drop redundant sidecar reaps and unused child helpers, and run FTS alongside semantic search.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Share HF attempt parsing with the sidecar init deadline, abort embed waits without killing the child, and restore last init options on recreate.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Treat sub-1 HF attempt env values as invalid, and drop leaked sidecar waiters when IPC send throws.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Keep sidecar init on a shared chain; each waiter can abort only its own wait.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): declare embedding-table existence probe as unordered LIMIT

The empty-table skip in semanticSearch is existence-only; declare it so the #2787 determinism guard stops failing coverage shard 3/3.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-15 12:11:47 +01:00
dependabot[bot]
dcf980581c
chore(deps)(deps-dev): bump @types/node in /gitnexus (#3289)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 26.4.1 to 26.5.0.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node)

---
updated-dependencies:
- dependency-name: "@types/node"
  dependency-version: 26.5.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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2026-09-15 07:14:30 +01:00
dependabot[bot]
41fa74cd84
chore(deps)(deps): bump zod from 4.4.3 to 4.5.4 in /gitnexus-web (#3282)
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Bumps [zod](https://github.com/colinhacks/zod) from 4.4.3 to 4.5.4.
- [Release notes](https://github.com/colinhacks/zod/releases)
- [Commits](https://github.com/colinhacks/zod/compare/v4.4.3...v4.5.4)

---
updated-dependencies:
- dependency-name: zod
  dependency-version: 4.5.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2026-09-14 13:19:45 +01:00
dependabot[bot]
e9469f2149
chore(deps)(deps-dev): bump @babel/types in /gitnexus (#3285)
Bumps [@babel/types](https://github.com/babel/babel/tree/HEAD/packages/babel-types) from 8.0.4 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-types)

---
updated-dependencies:
- dependency-name: "@babel/types"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
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2026-09-14 10:58:03 +01:00
dependabot[bot]
29f4ce0592
chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#3284)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.4 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
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2026-09-14 10:57:47 +01:00
dependabot[bot]
dcf6bbc11d
chore(deps)(deps-dev): bump @babel/parser in /gitnexus (#3283)
Bumps [@babel/parser](https://github.com/babel/babel/tree/HEAD/packages/babel-parser) from 8.0.4 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-parser)

---
updated-dependencies:
- dependency-name: "@babel/parser"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
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2026-09-14 10:57:32 +01:00
dependabot[bot]
8a10383563
chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#3281)
Bumps [@babel/generator](https://github.com/babel/babel/tree/HEAD/packages/babel-generator) from 8.0.0 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-generator)

---
updated-dependencies:
- dependency-name: "@babel/generator"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
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2026-09-14 10:57:18 +01:00
dependabot[bot]
9ac303ad14
chore(deps)(deps): bump dompurify from 3.4.13 to 3.4.15 in /gitnexus-web (#3280)
Bumps [dompurify](https://github.com/cure53/DOMPurify) from 3.4.13 to 3.4.15.
- [Release notes](https://github.com/cure53/DOMPurify/releases)
- [Commits](https://github.com/cure53/DOMPurify/compare/3.4.13...3.4.15)

---
updated-dependencies:
- dependency-name: dompurify
  dependency-version: 3.4.15
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2026-09-14 10:57:03 +01:00
dependabot[bot]
57e36560af
chore(deps)(deps): bump react-zoom-pan-pinch in /gitnexus-web (#3279)
Bumps [react-zoom-pan-pinch](https://github.com/BetterTyped/react-zoom-pan-pinch) from 4.0.3 to 4.2.0.
- [Release notes](https://github.com/BetterTyped/react-zoom-pan-pinch/releases)
- [Changelog](https://github.com/BetterTyped/react-zoom-pan-pinch/blob/master/CHANGELOG.md)
- [Commits](https://github.com/BetterTyped/react-zoom-pan-pinch/compare/v4.0.3...v4.2.0)

---
updated-dependencies:
- dependency-name: react-zoom-pan-pinch
  dependency-version: 4.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2026-09-14 10:56:48 +01:00
dependabot[bot]
fd270fdbf5
chore(deps)(deps-dev): bump jsdom from 29.1.1 to 30.0.1 in /gitnexus-web (#3277)
Bumps [jsdom](https://github.com/jsdom/jsdom) from 29.1.1 to 30.0.1.
- [Release notes](https://github.com/jsdom/jsdom/releases)
- [Commits](https://github.com/jsdom/jsdom/compare/v29.1.1...v30.0.1)

---
updated-dependencies:
- dependency-name: jsdom
  dependency-version: 30.0.1
  dependency-type: direct:development
  update-type: version-update:semver-major
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-14 10:56:34 +01:00
dependabot[bot]
ed2dd6b0ad
chore(deps)(deps): bump langchain from 1.5.4 to 1.5.11 in /gitnexus-web (#3276)
Bumps [langchain](https://github.com/langchain-ai/langchainjs) from 1.5.4 to 1.5.11.
- [Release notes](https://github.com/langchain-ai/langchainjs/releases)
- [Commits](https://github.com/langchain-ai/langchainjs/compare/langchain@1.5.4...langchain@1.5.11)

---
updated-dependencies:
- dependency-name: langchain
  dependency-version: 1.5.11
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-14 10:56:17 +01:00
Gergő Magyar
21a52af1d4
fix(lbug): ship FTS per-platform and recover in-place native aborts (#3274)
* fix(lbug): pin Ladybug core so Dependabot cannot ship a skewed FTS artifact

The extension version is a separate upstream constant. Ignore daily core bumps and fail the pairing gate when the committed manifest does not name the installed core.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): make doctor and CI FTS gates resolve the packaged artifact

Doctor and the REQUIRE_FTS file gates still treated an empty ~/.lbdb as
unavailable, which would turn three CI jobs red once analyze stops
installing into that tree.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): name native-abort and tuple-missing so analyze cannot mis-advise

The CLI summary's trailing else treated every unknown skip reason as a
missing extension. New crash and platform causes must get their own
remedies, not a network-install hint.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): delete the dead read-path FTS index create

ensureFTSIndex had no production callers and swallowed read-only
CREATE_FTS_INDEX failures, which hid the only signal that a reader
tried to write.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): vendor per-platform FTS artifacts so analyze needs no host install

Keyword search depended on a CDN fetch into ~/.lbdb. Shipping the five
published tuples inside the package makes air-gapped and ignore-scripts
installs load the same artifact the publish gate checksums.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): load the packaged FTS artifact before any network install

Analyze still required a CDN fetch into ~/.lbdb even when the package
already shipped the file. FTS now path-loads the vendored tuple first
and records source labels so a later truncated home copy cannot steal
the diagnosis.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): diagnose a core/extension version skew instead of a missing runtime

A structurally valid FTS artifact whose path version disagrees with the
packaged pin must name both versions, not prescribe VC++ or OpenSSL.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): stamp an FTS phase so repair stays usable after an in-place abort

A native CREATE_FTS_INDEX abort leaves no skip reason; the next run infers
it from the dirty flag, and --repair-fts must not treat that phase as a
half-written graph.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): park an in-place FTS crash WAL without wiping the graph

An FTS abort after a successful checkpoint must reopen the live index on
macOS, Windows, and Linux. Staging never parks the live WAL; readers keep
today's large-WAL refusal.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): refuse read-only opens of an FTS-poisoned WAL

MCP and serve cannot repair a leftover in-place abort. Fail before the
native open and name --repair-fts, on macOS, Windows, and Linux.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): name a vendor-neutral Windows OpenSSL prerequisite

OQ1 is unanswered here so GitNexus does not ship OpenSSL DLLs. Windows
FTS now asks for a system OpenSSL 3 runtime instead of Git Bash PATH.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): inject the FTS vendor root and redact it on HTTP and MCP

Path-loaded artifacts no longer vary with HOME. Tests pass an injected
vendor tree and assert search warnings never leak a filesystem path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(lbug): document load-only as the global FTS install default

Analyze still overrides to auto. Packaged per-platform artifacts load
before any network install on macOS, Windows, and Linux.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(lbug): format the FTS install-policy README table

Prettier does not run on Markdown in pre-commit, so the U10 table wrap
needs its own formatting commit.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): skip FTS CREATE after a persisted native abort

A recovered analyze run was retrying CREATE_FTS_INDEX from skipReason
alone. Keep that skip until --repair-fts, fail closed on unsupported
tuples, and honor the checkpoint warrant for park/repair.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): honor checkpoint flushed warrant and align FTS tests with packaged vendor

A no-op CHECKPOINT must not satisfy the FTS park warrant, and CI still asserted HOME-only FTS isolation after analyze started path-LOADing the packaged artifact.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): accept a nonempty incremental write set in the #2790 recovery check

FTS-phase recovery can incremental-add files (changed=0, added=1). That is not the #2790 empty-diff wipe skip.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): compare FTS home versions to the core pin and tighten the publish filename gate

Ladybug's ~/.lbdb/extension directory is the runtime/core version; treating it as the artifact version false-diagnosed skew. The publish guard now rejects a path-escaping filename the same way the fetch script does.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): seed FTS e2e fixtures from the packaged vendor artifact

A machine with no ~/.lbdb copy should still run the vendor-survivorship cases; the seed no longer depends on HOME or a network install.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3274)

Keep in-place FTS abort evidence after persist so a second CREATE abort
cannot fail-open readers, and close the CLI, loader, embed, and e2e gaps
the review called out.

Note: full npm test hit Ladybug worker-pool startup failures under memory
pressure; tsc and 180 targeted unit tests passed.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3274)

Run the vendored-path symlink guard on the OS matrix, put e2e HOME
fixtures on Ladybug's real extension layout, pin the embed crash-WAL
gate before the writable open, and let analyze writers park through
missing-shadow recovery.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): keep --repair-fts CI green after vendored-first FTS

Never-installed warning fixtures must not inspect a packaged vendor binary, and a failed dirty restamp must not abort an otherwise successful --repair-fts run.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): give the #1169 analyze e2e the same 90s Windows budget as its sibling

The first #1169 persist-meta case was still on a 60s spawn/it budget and was killed banner-only on windows-latest after the FTS warning fixture no longer failed the shard first.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(ci): reweight Windows shards after the FTS e2e grew

Vendored-first HOME fixtures pushed fts-extension-e2e to ~6 minutes on windows-latest, so the old 146s weight packed it with skills-e2e and blew the 20-minute watchdog.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-14 08:52:24 +01:00
Gergő Magyar
c4ecf398de
chore: release v1.6.12 (#3272)
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2026-09-12 22:16:01 +01:00
mengkaka
79543c8f83
feat(storage): add configurable index storage and content retention tiers (#3060)
* feat(storage): add configurable index storage and content retention tiers

Rebase #3060 onto current origin/main. Keep GITNEXUS_STORAGE_PATH,
GITNEXUS_STORAGE_ROOT, and GITNEXUS_CONTENT_RETENTION, and fold in
main's FTS skip, embed-session, and help-text updates.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Keep legacy registry rows on the local storage fallback, resolve
symlinks before the destructive-path guard, and align hook lookup
with CLI branch slugs, branch-slot metadata, and longest-path match.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Only list swept upload directories after a successful removal so
callers cannot treat a permission or transient rm failure as gone.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Document that getStoragePath may consult registered storage while
this module still does not mutate the global registry.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): close review findings for external indexes and retention

Re-inspect ownership under the analyze lock, fail-closed when the
registry file is missing, and keep skip-git hook discovery plus
retention fields on HTTP/MCP list surfaces. /api/file stays 410
unless contentRetention is full.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3060)

Treat lock-only index dirs as empty, honor HTTP --force storage policy, and prefer registered plus branch-aware slots in hooks and augment.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Keep hook fallbacks inside the current worktree, compare foreign-local slots canonically, and make storage fixtures survive ownership validation.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Fix macOS hook test expecting realpath'd registry paths.

resolveHookRepo returns the written registry path, not a filesystem realpath, so the assertion must match that.

* Address gitnexus-check warnings on hook install docs and slot tests.

The Cursor troubleshooting list omitted registry-query.cjs, and the writable-slot test only checked that isDirectory exists instead of that the path is a directory.

* Align the HTTP catalog source-scan with skippable resolveRepo validation.

resolveRepo lists fresh repos with validate: options.validateStorage !== false so DELETE can skip prune; the test still required a literal validate: true.

* Harden storage path sinks so CodeQL path-injection and ReDoS alerts clear.

Contain every filesystem probe inside the resolved storage slot with the inline path.relative idiom, reject filesystem-root slots, and trim slot basenames in linear time.

* Settle bridge stamps before writing so CI size/mtime matches stay stable.

LadybugDB can still flush into bridge.lbug after close+rename; persist whole-millisecond mtimes and wait for consecutive stats to agree so a freshly written pair matches.

* Type the settled bridge stat as fs.Stats so tsc does not see bigint.

Awaited<ReturnType<typeof fsp.stat>> collapsed the bigint overload and broke prepare/typecheck on CI.

* Keep the bridge mtime stamp exact so same-size swaps still fail the pair check.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Wrap the bridge stamp predicate so prettier --check stays green.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Require a quiet interval before stamping a settled bridge file.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Reuse shared storage and settle helpers instead of local copies.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-12 20:31:55 +00:00
pcaceres-hazloagil
a8736a07d0
fix(lbug): checkpoint race in pool-adapter.ts + pin @ladybugdb/core to 0.18.3 (#3189)
* fix(lbug): await evict-then-reopen so it can't race the checkpoint

closeOne() closed the evicted repo's shared Database with a
fire-and-forget `db.close().catch(() => {})` (no await). Both call
sites that evict-then-reopen — evictLRU() right before doInitLbug
opens the new connection, and the "idle & changed" path in initLbug —
proceeded to open the next repo's connection immediately after,
without waiting for the evicted repo's close (and the checkpoint it
triggers) to finish. On the real engine the new open can then collide
with that still-in-flight checkpoint, surfacing on any read as:

  Runtime exception: Cannot open database in read-only mode while
  checkpoint is in progress. Please retry later.

This reproduces reliably once more than MAX_POOL_SIZE (5) distinct
repos are queried within a short window (self-hosted deployments with
more than a handful of active repos hit it routinely), and gets worse
under genuinely concurrent requests for different repos, since nothing
serialized pool mutations across callers either.

Fix:
- closeOne / evictLRU are now async and await their internal work
  (closeOne's own close() call; evictLRU's call to closeOne), closing
  the race within a single initLbug call.
- The exported initLbug is wrapped in a small async mutex
  (initLbugInner does the real work) so concurrent initLbug calls for
  different repos serialize instead of each racing their own
  evict-then-reopen against the others.
- closeLbug's two closeOne() calls are now awaited too — closeOne
  becoming async meant closeLbug could resolve before pool.delete()
  had actually run, which a repo-pinning test caught (isLbugReady()
  briefly still true right after a resolved closeLbug()).
- closeOne now deletes the pool entry (and clears its pin, and
  notifies pool-close listeners) BEFORE the awaited db.close(), not
  after. Review caught that the previous order left a "zombie" entry
  reachable via pool.get(repoId) — closed=true, available emptied, but
  still present — for the duration of that await; a same-repo
  query/init landing in that window would see isLbugReady() as true
  and hit a "Connection pool integrity error" in checkout() instead of
  just reopening. Deleting first removes the entry entirely, so a
  concurrent caller takes the normal fresh-open path instead.

Verified two ways:
- Against the compiled bundle (`ghcr.io/abhigyanpatwari/gitnexus`,
  1.6.10/1.6.11 — pool-adapter.js is byte-identical between them): an
  A/B docker build with 7 tiny local repos and genuinely concurrent
  (parallel, not sequential) /api/graph requests goes from 7/7 failing
  to 7/7 succeeding on a freshly-analyzed pool.
- Unit tests here (mocks @ladybugdb/core the same way as
  lbug-pool-pinning.test.ts): one asserts the evicted repo's close()
  completes before the initLbug call that triggered the eviction
  settles; another asserts closeLbug's own promise doesn't resolve
  before the underlying close() does. Both gate their mock's close()
  on a real short delay and were confirmed to fail against code that
  drops the corresponding await.

Note: a second, deeper issue was also observed in the docker A/B
setup — repeated rounds of concurrent access show a repo that has
gone through one evict+reopen cycle can become permanently unable to
reopen for reads, identically with and without this fix. That did not
reproduce with mocks and isn't understood yet; filed separately as
#3186, which stays open and untouched by this PR — this fix closes a
real, root-caused bug on its own but does not resolve #3186 by itself.

Second review round caught a follow-up: the idle-timeout sweep calls
closeOne(repoId) directly, outside of initLbug's poolLock. Now that
closeOne deletes the pool entry before its awaited close(), an
unsynchronized idle close racing a same-repo initLbug could let that
initLbug treat the repo as absent while the idle close (and its
checkpoint) is still in flight — reopening the same class of race this
PR exists to close, just via the idle path instead of LRU eviction.
Routed the idle sweep's closeOne call through withPoolLock too, so it
serializes against initLbug the same way evictLRU already does.
(Tried to add a mocked regression test for this specific interleaving;
dropped it — the mock's dbCache-reuse path masks the difference
regardless of the fix, so it could not be made to discriminate
reliably. Fixed by direct code review instead, same as the note below
already does for the native-engine-specific checkpoint collision.)

Also removed the initLbugInner per-repoId initPromises dedup map: with
every initLbug call now serialized through poolLock, a second call for
a repoId already being initialized cannot observe a pending promise in
initPromises (the first call always fully completes, including its
finally-block cleanup, before the lock releases) — the branch was dead
code the bot correctly flagged twice.

Third review round caught two more follow-ups on the same theme (both
introduced by making the idle sweep route through poolLock):
- closeLbug()'s no-arg ("close everything") branch still calls closeOne
  directly in a loop over a snapshotted pool.keys(), without the lock —
  an initLbug racing that loop could register a fresh entry the
  snapshot never saw, leaving it resident after a call meant to empty
  the pool. Wrapped the snapshot+loop in withPoolLock.
- The idle timer callback can now sit queued behind an in-progress
  initLbug before its turn arrives, and that init (or a concurrent
  touchRepo()) can refresh lastUsed in the meantime — so the pre-lock
  idleness check taken when the timer fired can be stale by the time
  it actually runs. Re-check lastUsed/checkedOut again inside the lock,
  right before closing, instead of trusting the outer snapshot.

* fix(deps): pin @ladybugdb/core back to 0.18.3

Bisected the "checkpoint is in progress" symptom (root cause #2, not
touched by the pool-adapter.ts fix in the previous commit) down to a
single dependency-version-bump commit with zero application code
changes: e91ea0ca, "chore(deps): bump @ladybugdb/core in /gitnexus",
0.18.3 -> 0.19.0.

Confirmed both ends independently, on the actual official build
(Dockerfile.cli), no engine-swapping involved:
- v1.6.9 (native 0.18.3, as released): 7 tiny repos, 5 rounds of
  genuinely concurrent /api/graph requests each — 0/35 failures.
- v1.6.10/v1.6.11 (native 0.19.1, as released): same repro — fails
  every round from round 2 onward.
- v1.6.11 completely unmodified (not even this repo's own fix) with
  ONLY @ladybugdb/core downgraded to 0.18.3 (real `npm install
  @ladybugdb/core@0.18.3 --save-exact`, full rebuild, no application
  code touched): 0/56 failures across 8 rounds.

That last point isolates this fully: none of GitNexus's own JS changes
between 1.6.9 and 1.6.11 (including the dbIdentity/rebuild-detection
logic added in #2614, or anything in sidecar-recovery.ts) are
load-bearing for this symptom — the regression lives entirely in the
native engine, introduced somewhere between 0.18.3 and 0.19.0.

Full unit suite green with this pin (14818 passed, same 2
environment-specific flakes present on main regardless of this change
— macOS realpath symlink resolution in analyzer-identity.test.ts and a
subprocess retry-count assertion in review-agent-workflow.test.ts,
neither touches lbug/ladybugdb).

This is a pragmatic pin, not a long-term fix: 0.19.0+ presumably ships
fixes of its own that 0.18.3 lacks, and the actual regression should
still be root-caused and fixed upstream (tracked at
LadybugDB/ladybug#919, which a maintainer is already engaging with).
Recommend re-evaluating this pin once that's resolved.

* fix(lbug): serialize closeLbug's single-repo branch with the pool lock

Review on PR #3189 caught the same class of gap as three earlier
rounds on the previous PR: closeOne now deletes the pool entry before
its awaited db.close() finishes, so an initLbug(repoId, ...) racing
this branch could acquire the lock right after the delete, see no
cached entry, and start opening a fresh connection while this close's
checkpoint is still in flight — reopening the exact race withPoolLock
exists to close. The no-arg ("close everything") branch already went
through the lock; this makes the single-repoId branch consistent with
it.

npx tsc --noEmit clean, full lbug/pool unit suite (19 files, 257
tests) green.

* fix(lbug): address azizur100389's review findings on PR #3189

- pool-adapter.ts: the idle timer's in-lock recheck already re-verified
  lastUsed/checkedOut against a fresh snapshot, but not pinnedRepos —
  pinRepo() can run while the timer callback is queued behind an
  in-progress initLbug, and the timer would then still close a repo the
  caller just pinned, dropping that lease entirely (LOW finding).

- Storage-version mismatches (opening an index written by a different
  @ladybugdb/core build, e.g. after downgrading the pinned dependency)
  surfaced as GitNexus's generic "unavailable, retry later" and were
  retried LOCK_RETRY_ATTEMPTS times for nothing, since the file's
  on-disk version never changes between retries (HIGH/blocking
  finding). Added isStorageVersionMismatchError() to lbug-config.ts and
  wired it into both places that actually open a LadybugDB connection:
  pool-adapter.ts's doInitLbug (used by MCP tools/wiki/group-sync) and
  lbug-adapter.ts's doInitLbug (the separate single-connection path
  /api/graph and /api/query use via withLbugDb). Both now fail fast
  with an actionable "run `gitnexus analyze --force`" message instead.

  In lbug-adapter.ts the check wraps both openLbugConnection and
  ensureReadOnlyConnectionUsable: the native engine's storage-version
  check isn't necessarily enforced until the first real query runs
  (ensureReadOnlyConnectionUsable's own probe), so openLbugConnection
  alone can succeed on a mismatched file.

Verified end-to-end against the real native engine: registered a repo
under the pinned 0.18.3 engine, swapped its .gitnexus/lbug file for one
written by an unmodified v1.6.11 (0.19.1) image, restarted the server
to bypass in-memory connection caching, and queried /api/graph — got
the actionable message instead of the generic retry-later error.
`npx tsc --noEmit` clean; full lbug/pool unit suite (36 tests, 14
files) green.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(test): export isStorageVersionMismatchError from wholesale lbug-config mocks

doInitLbug's catch block (both pool-adapter.ts and lbug-adapter.ts) now
calls isStorageVersionMismatchError() unconditionally on every open
failure, but 5 test files wholesale-mock lbug-config.js without that
export — Vitest rejects access to an undeclared mocked export, so any
test driving an error through that catch block (e.g. the WAL-recovery
and evict-reopen-race suites) breaks (bot finding on PR #3189).

Added isStorageVersionMismatchError (stubbed to always return false —
none of these suites exercise the storage-version path) and
STORAGE_VERSION_MISMATCH_SUGGESTION to each mock, matching the existing
isWalCorruptionError/WAL_RECOVERY_SUGGESTION pattern already there.
analyze-pagesize-error.test.ts was not affected: it mocks lbug-config.js
via importOriginal, so it already re-exports the real function.

Verified: the 6 affected files (48 tests) pass; npx tsc --noEmit clean.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(test): export isStorageVersionMismatchError from remaining lbug-config mocks

The previous commit fixed the 5 test files that wholesale-mock
lbug-config.js via vi.mock(), but missed 4 more that mock it via
vi.doMock() instead (a different Vitest API my earlier grep for
vi.mock(...) didn't match): lbug-adapter-wal-schema.test.ts (8
call sites), lbug-checkpoint-lifecycle.test.ts (12 call sites), and
basicblock-callee-ids-schema.test.ts / convex-metadata-persistence-
contract.test.ts (1 shared mock factory each). All of these exercise
lbug-adapter.ts's doInitLbug, which now also calls
isStorageVersionMismatchError() unconditionally on every open failure
— caught by actually running the full suite rather than trusting the
`-t lbug` name filter, which doesn't match these files' test names.

Verified: all 10 affected files (97 tests) pass; npx tsc --noEmit
clean. Full suite rerun in progress to confirm no other gaps remain.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(lbug): fail-fast storage-version mismatch and unlock pool lock-retry

Incremental analyze was warning through a version mismatch, and lock-retry
sleep held the pool mutex so one analyze-locked repo blocked every other
init. Fail immediately with the rebuild hint on both adapters, and sleep
outside withPoolLock so other repos can open during backoff.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3189)

- Serialize initLbugWithDb on withPoolLock so it cannot attach to a Database
  closeOne is still checkpointing.
- Delete pin leases again after the awaited close so a pin acquired during
  teardown cannot survive onto the next init.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-12 14:49:21 +01:00
Gergő Magyar
ceaff27c1e
fix(parse-cache): retire a chunk whose durable generation could not be reset (#3271)
* fix(parse-cache): retire a chunk whose durable generation could not be reset

#3200 skipped the parse-cache write when `prepareDurableParsedFileChunk`
failed, but the chunk hash was already in `usedKeys` from the lookup. When a
previous generation existed on disk — reachable because the coherence gate
re-dispatches a chunk whose `.v8` shard is live but whose durable shards are
unreadable — `saveParseCache` copied that old shard forward, and the durable
prune, which keeps exactly the saved keys, retained the mixed directory. The
next run then served a warm hit out of a directory the previous run had
already decided it could not account for.

Retire the hash instead of only skipping the write:

- `ParseCache.staleKeys` is a transient set that `saveParseCache` filters out
  of its key list. Filtering at save is what makes it survive the post-parse
  key merges in run-analyze (#2106 sibling fold, unreadable-meta retention),
  and it reaches both stores at once because the durable prune keeps exactly
  the keys `saveParseCache` returns.
- The hash is retired at the reset-failure site, which runs unconditionally.
  The parse-cache write branch sits behind `rawResults.length > 0`, so a chunk
  whose worker round returns nothing would never have been retired there.
- Worker-quarantined chunks get the same treatment for the same reason: they
  also reach the save with no in-memory entry, which is what triggers the
  copy-forward. That branch was previously unreachable when the worker died on
  the chunk and returned no results.
- Guard the durable prune's non-survivor `fs.rm`. The causes that break the
  reset break that delete too, and it sat outside the validation try — one
  undeletable directory aborted the loop and cost every remaining chunk its
  index entry.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* fix(review): apply review findings

Retire a chunk only when a generation nobody cleared is still on disk.
`prepareDurableParsedFileChunk` is rm-then-mkdir, and the catch could not tell
the two apart: an rm that succeeded before a failing mkdir leaves NO directory,
so the workers recreate it and write a clean generation. Retiring there
discarded a good `.v8` for no safety gain — and under a correlated failure
(an empty durable index turns every chunk into a re-dispatched miss, then a
descriptor burst rejects the resets en masse) it would have wiped both shared
stores for every branch, where the pre-#3204 posture cost only the writes.
`durableChunkHasStaleShards` is the discriminator.

Finish the delete guard on the path that runs before it. The staged→live
overlay in `mergeStagedDurableParsedFileStore` awaited `replaceDurableChunkDir`
unguarded, so on the cold-rebuild path one undeletable directory threw out of
the merge before the prune ever ran — the durable index was never rewritten and
a retired chunk kept its directory. Same log-and-continue treatment, plus
best-effort handling of the two `.replacing` backup removals.

Aggregate the prune's delete-failure warning: a store-wide cause hits every
non-survivor, and one line per directory buries the message that matters.

Tests:
- Guard the chmod-based prune test with the repo's `skipIf` for root/Windows
  and assert the directory survived, so it cannot pass vacuously where the
  delete succeeds.
- Add a two-chunk control: one chunk's reset fails, and the sibling must stay
  warm through the next run. One chunk plus a global spawn marker could not
  tell "retires the failing chunk" from "retires everything".
- Add the rm-succeeded/mkdir-failed case, which must NOT retire.
- Model both post-parse merges in the R4 test (the sibling fold re-adds the
  key, the unreadable-meta fallback unions `entries`), and move the in-memory
  `entries` assertion to a direct helper test — the sharded path never
  populates `entries`, so the old assertion proved nothing.
- Type the cache factory as `ParseCache`; the `staleKeys` assertions were
  TS2339 and `?? false` read as a pass regardless.
- Register the store test in the cross-platform filesystem list.

Correct two comments that still described a quarantined chunk by the premise
this fix disproves.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* fix(review): stop swallowing the backup removal in replaceDurableChunkDir

Swallowing that `fs.rm` manufactured the very hazard this PR removes. When a
non-empty `${to}.replacing` survives, the following `fs.rename(to, backup)`
cannot overwrite it and is suppressed as "dest was missing", so `backedUp`
stays false and the `fs.cp(from, to)` fallback merges the staged generation
INTO the live directory — old shards alongside new, which the prune then
indexes as one valid survivor. Let it throw; the per-entry guard added to
`mergeStagedDurableParsedFileStore` already stops one such chunk from costing
the others their prune. The post-publish backup cleanup stays best-effort,
where an undeletable leftover really is litter.

Also:
- Make the sibling-isolation test perform the run its title claims. It asserted
  index membership and stopped; an index entry does not exercise the warm-hit
  path, so it would have passed even if the sibling re-dispatched. Each chunk
  now runs alone so the single spawn marker names which one re-parsed.
- Correct two comments that outran the implementation: retirement is gated on
  shards actually surviving, and an undeletable directory is dropped from the
  index rather than removed from disk.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-09-12 12:16:45 +01:00
azizur100389
3f5ca8cdb7
fix(storage): guard stale file-lock reclamation (#3234)
* fix(storage): guard stale file-lock reclamation

* fix(storage): close lock recovery failure paths

* Address PR review feedback (#3234)

- Flush the lock-child stderr diagnostic before process.exit
- Treat explicit NaN timeouts as the default ceiling
- Document non-retryable guard timeouts on the worker IPC contract

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): stop mislabeling live lock waits as orphan recovery

A brief peer inspect must not attach guardPath or send operators to
RUNBOOK delete steps. Refuse lock-free embeddings sync, stop --watch
only on a true guard timeout, and drop an unreadable self-created
guard before failing closed.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3234)

- Verify lock/guard absence before degrading a denied main-lock create
- Launch the third contender from unlinkSync, not the dead rename path
- Document group-lock timeouts for unrecoverable guard leftovers

Co-authored-by: Cursor <cursoragent@cursor.com>

* style: prettier index-lock reclaim guard tests

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): treat O_EXCL as the lock-file presence check

CodeQL flagged existsSync-then-wx on analyze.lock. Create with wx first and
only reclaim unreadable leftovers after grace, so a successor is never
unlinked from a lost race.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-12 11:47:12 +01:00