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2099 commits
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2ff1bf76db
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chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#3345)
Bumps [@babel/generator](https://github.com/babel/babel/tree/HEAD/packages/babel-generator) from 8.0.5 to 8.0.6. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.6/packages/babel-generator) --- updated-dependencies: - dependency-name: "@babel/generator" dependency-version: 8.0.6 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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3f2a06a2bd
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chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#3344)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.5 to 8.0.6. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.6/packages/babel-traverse) --- updated-dependencies: - dependency-name: "@babel/traverse" dependency-version: 8.0.6 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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f6d3891f3f
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chore(deps)(deps): bump onnxruntime-common in /gitnexus (#3343)
Bumps [onnxruntime-common](https://github.com/Microsoft/onnxruntime) from 1.29.0 to 1.30.0. - [Release notes](https://github.com/Microsoft/onnxruntime/releases) - [Changelog](https://github.com/microsoft/onnxruntime/blob/main/docs/ReleaseNotesWorkflow.md) - [Commits](https://github.com/Microsoft/onnxruntime/compare/v1.29.0...v1.30.0) --- updated-dependencies: - dependency-name: onnxruntime-common dependency-version: 1.30.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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5be80b1fc3
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fix(lbug): self-heal read-only opens refused by an interrupted checkpoint (#3340)
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* fix(lbug): self-heal read-only opens refused by an interrupted checkpoint Homelab repro 2026-09-19 (image 1.6.10-20260917, @ladybugdb/core 0.19.x): a wiki pod killed mid-CHECKPOINT left the engine's checkpoint artifacts on disk (lbug.wal.checkpoint / lbug.shadow / checkpoint intent+apply locks), and every later READ-ONLY open refused with 'Cannot open database in read-only mode while checkpoint is in progress' — permanently, until a writable open (any gitnexus analyze) happened to run. Two defects, both fixed: 1. The refusal was unclassified. ensureReadOnlyConnectionUsable (direct adapter) and openReadOnlyDatabase (pool) recovered missing-shadow and shadow-replay errors but rethrew this one raw, so 'LadybugDB unavailable for __wiki__' repeated forever. Add isReadOnlyCheckpointInProgressError (LADYBUGDB-CONTRACT, live-verified against 0.19.1) and route it through the same writable-open recovery — including at OPEN time, where the refusal fires before any probe can run (pool: init() moved inside the try; direct: doInitLbug catch). 2. The existing shadow-replay recovery was not durable. Reproduction matrix on 0.19.1: the writable probe replays the WAL in MEMORY only — without an explicit CHECKPOINT the engine drops the pages at close and the follow-up read-only open silently serves the pre-checkpoint state. Both recovery paths now CHECKPOINT after the probe, which applies the replay, consumes the sidecars, and clears the checkpoint locks. Verified end-to-end: real engine 0.19.1, killed-mid-CHECKPOINT state → exact refusal → pool adapter self-heals → 80,800 rows intact, sidecars consumed. The planted-signature integration test runs on any engine version (refusal asserted only where the engine emits it, 0.19+). * docs(architecture): list checkpoint-in-flight artifacts and the read-path self-heal * fix(lbug): address review findings — shared cursor closer, tighten structural guard Both findings from the gitnexus-check review on this PR: 1. pool-adapter.ts: the recovery CHECKPOINT closed its cursor with a bare unawaited result.close?.(). Use the shared best-effort closer (closeQueryResults) the repo already funnels both adapters through, so a cursor-close failure stays cleanup and cannot escape as an unhandled rejection. 2. sidecar-recovery.test.ts: the structural regex omitted the leading negation, so as a substring match it also accepted the inverted predicate (recover ONLY shadow-replay, exclude checkpoint) — the exact regression the guard exists to prevent. Pin the full '!isReadOnlyShadowReplayError(err) && !isReadOnlyCheckpointInProgressError(err)' throw-through shape. * test(lbug): wire the recovery plant into lbug-db/LBUG_NATIVE; force the refusal on any engine pin Address the tri-review findings (all four): P1 — the planted-signature integration test was collected by the parallel 'default' project and never by the serialized 'lbug-db' project, and Windows/macOS CI never ran it: register it next to its sibling in vitest.config.ts (lbug-db include + default exclude) and in cross-platform-tests.ts LBUG_NATIVE, per TESTING.md's rule for native @ladybugdb/core suites. Verified via 'vitest list --project lbug-db'. P2 — on the committed 0.18.3 pin the plant passes as 'pool opens and count(n)=300' without ever exercising the new classifier or recovery CHECKPOINT. Add forced-refusal behavioral tests for BOTH adapters: a mocked native layer whose first read-only Database refuses with the canonical 0.19 message, asserting the exact self-heal shape (ro-refused -> writable open -> CHECKPOINT -> ro retry) and that a healthy db never triggers a writable open. The direct adapter is lazy, so its refusal is scripted at the first probe query rather than init(). P2 — the LADYBUGDB-CONTRACT header on isReadOnlyCheckpointInProgressError claimed '^0.18.0' like its siblings; only 0.19.x emits this string (0.18.3 tolerates the state). State the first-observed version so a bump reviewer validates the right binary. P2 — the pool's writable replay recovery quarantined on missing-shadow even when the error came from the post-probe CHECKPOINT, where the main file has already changed: mirror the direct adapter's probeSucceeded guard (replaySucceeded) and fail closed instead of parking a live sidecar. Also assert walBuffer.byteLength > 0 in the plant so the fixture cannot silently degrade into an empty shell on tolerant engines. * test(lbug): fix hosted-CI failures — Windows handle release, version-gated plant, prettier Address the CHANGES_REQUESTED review of the hosted run: Windows blocker (Win32 Error 33, locked file region at the pooled reopen): the fixture now makes handle release explicit — waitForFixtureRelease probe-reads the db and its residual WAL with bounded retries after every native close (plant, raw refusal probe, pool close), mirroring the adapter's own Windows handle-release probing. The WAL is re-planted from the captured bytes instead of renamed: a close-time auto-checkpoint can consume the live .wal out from under the rename (ENOENT, second flake). Version-gate the plant itself: on < 0.19 engines that tolerate the planted signature, its synthetic sidecars are not a consistent staging state for the old engine (double-apply replays surfaced as 'Person already exists in catalog' — the third flake), and no refusal can be forced there anyway. The plant now skips below 0.19 with that rationale in-file; the behavioral contract on every pin stays with the forced-refusal units, and this native suite remains registered in lbug-db + LBUG_NATIVE so Win/macOS exercise it as soon as the pin moves off 0.18.3. Also: prettier on the two flagged files (format gate). * fix(lbug): keep failed checkpoint heals from re-entering CHECKPOINT Wrap recovery failures without repeating native refusal text, skip already-wrapped errors in doInitLbug, and pin constructor-time heal plus the Windows reopen skip. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3340) - Clean each forced-heal tmpDir in afterEach so earlier cases do not leak - Compare major.minor when version-gating the interrupted-checkpoint plant Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3340) Reset the pool forced-refusal mock Database sequence in native.reset() so later tests can still script the first construction as the checkpoint victim. * Address PR review feedback (#3340) Count every MATCH on the pool forced-refusal mock and assert the writable replay probe so CHECKPOINT-without-probe cannot stay green. --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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7376347058
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feat(ingestion): add tRPC procedure detection and MCP chain/route surfacing (#3339)
* feat(ingestion): tRPC pattern detection — procedures, curried calls, route extraction
Three changes to properly index tRPC router files:
1. HOC-in-pair patterns: detect procedures like
'create: procedure.mutation(async ({ input }) => {...})'
as named Function nodes (pair > call_expression > arguments > arrow_function)
2. Curried call detection: capture 'workflow(db)(input)' chained calls
where call_expression.function is itself a call_expression
3. tRPC route extraction: new route-extractors/trpc.ts detects
.query()/.mutation()/.subscription() procedures, maps to /trpc/* routes
with prefix inference from router variable names
4. Function/Const dedup: structural check skips Const nodes when
variable_declarator value is arrow_function/function_expression
5. Process-route linking: match by (filePath, methodName) instead of
filePath only, preventing shared flows across procedures in same router
(cherry picked from commit eced15e60a39a181a48bff8c5bbe278d26aa53b8)
* fix(route-extractors): line-by-line scanner for chained tRPC procedures
Original regex only matched direct patterns (list: proc.query()) but not
chained patterns (create: proc.input(z.object({...})).mutation()). Only
41/256 routes were detected on Jurialis.
Rewrote extractTrpcRoutes() as a line-by-line scanner that:
- Detects procedure keys starting with *Procedure builders
- Tracks currentProcedure forward until terminal .query()/.mutation()
- Handles .input() chaining naturally
- Deduplicates via seen Set on procedurePath
Result: 245 routes from 30 routers (was 41), 256 total after re-index.
(cherry picked from commit 49edf953e93e6b67b77932e866fcbfb8d089b1f3)
* feat(mcp): expose tRPC chains via context/query tools
Eight fixes to make the tRPC route->procedure->workflow->sub-workflow chain
visible through the standard MCP tools (context, query) that AI agents use,
instead of requiring raw Cypher queries.
- A context: order incoming/outgoing CALLS test-last, raise LIMIT 30->100
- B query: batched ENTRY_POINT_OF lookup, surface route URL on processes
- C query: mark process_symbols entry point with is_entry_point=true
- D entry-point-scoring: skip UTILITY_PATTERNS (get*/set*) penalty for
symbols in tRPC router files so framework boost (3.0x) is preserved
- E fts-schema: index Route nodes so /trpc/* URLs are keyword-searchable
- F tools: bump max_symbols default 10->25 to fit procedure->workflow chain
- G context: optional chain_depth (0-3) param walks CALLS edges in both
directions and returns layered chain field
- H LadybugDB bug workaround: WHERE r.type IN [...] silently drops edges
on relationship properties; replace with OR chains (7 occurrences in
local-backend.ts, pdg-impact.ts, graph-queries.ts)
Validated on Jurialis: setProviderCap procedure now appears as caller of
setProviderCapWorkflow, /trpc/cabinet.setProviderCap Route is searchable,
chain_depth=3 returns the layered call graph.
(cherry picked from commit c24df0adce91e80f191a5c5d2e8b14e9da677366)
* feat(mcp): surface is_entry_point + routes in context, raise query limit
context() is the mandatory pre-edit tool (AGENTS.md). Until now an agent
had to issue a separate query() call just to learn whether its symbol is
a process entry point or which HTTP route it handles. These two fields
make context() self-sufficient for the bmad-dev flow.
- context: query STEP_IN_PROCESS now returns p.entryPointId; new
ENTRY_POINT_OF lookup attributes routes only from processes where the
symbol is the entry point (middle steps do not own the route) plus any
direct Route->symbol handler edge (tRPC procedures outside any Process)
- context: new top-level is_entry_point (true only) and routes[] fields
({url, method?}), emitted only when non-empty to keep the diff additive
- query: raise default limit 5->10 so dense domains (tRPC action router
with 20 chains, data-export with 9 flows) surface more of their flow
set without an explicit param
(cherry picked from commit 004f5b0ba985fcef3dfac5e67a2f2f7262184215)
* docs(mcp): document chain_depth, routes, and entry-point flag; neutralize examples in comments
* fix(mcp): address code-review findings on tRPC entry points, queries, and dispatch
- entry-point scoring: optional-chain framework detection and normalize
path separators before router-pattern matching (P1 crash on .js routers)
- tRPC extractor: emit controllerName as null (callers resolve via
lookupClassByName; a router object stringified as name corrupted lookups)
- route dedup: key seenRoutes by method:url so GET/POST pairs survive
- legacy TS queries: drop curried-call patterns (arity-corrupting for
overload resolution) and require non-array callee on pair member calls
- registry-primary TS query: mirror the non-array-callee predicate on the
new pair member-expression patterns (fixes query compile error)
- group tool port: forward chain_depth into per-tool context args
* fix(mcp): nested tRPC router paths, controller-less route binding, query chain_depth
- trpc extractor: brace-depth nesting stack composes sibling router paths (bare router() import style included); merge-prefix dot normalization; strict publicProcedure allowlist gate; drop phantom router metadata
- call-processor: bind controller-less tRPC routes to same-file handlers via exact single-match symbol lookup; ambiguous or missing handlers skipped
- query/group query: optional chain_depth (0-3) enriches ranked processes with their context chain; fix _computeContextChain layer docstring
- tree-sitter TS/JS scope queries capture string-key function declarations; tRPC pattern scoring narrowed to server router files
- parse-cache schema bump to v103 for extractor and route-binding changes
- add trpc route extractor regression tests (9 cases incl. sibling nesting and merge prefix)
* Address PR review feedback (#3339)
Close remaining review threads: compact tRPC keys, comment-safe terminals,
quoted-key identifier HOC captures, group-query default alignment, and
LadybugDB label scalars on context chains.
* chore(autofix): apply prettier + eslint fixes via /autofix command
* test: pin PARSE_CACHE schema bump to 103 (PR #3339 review fixes)
* fix(ingestion): bind same-name tRPC handlers and surface HANDLES_ROUTE
Same-name procedures resolve by startLine, the extractor keeps nested paths
through multiline schemas, and context/query UNION HANDLES_ROUTE for leaf
procedures that never become Process entries.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Clamp group query bounds, drop HOC pair false positives, emit tRPC
terminal lines and hyphenated quoted keys, cap chain BFS concurrency,
and restrict the router utility exemption to accessor names.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Score JS/JSX tRPC routers like TypeScript, ignore inner db.query and
unrelated .merge calls, mask regex braces, and assert clamp tests invoke
the query mock.
Co-authored-by: Cursor <cursoragent@cursor.com>
* chore(autofix): apply prettier + eslint fixes via /autofix command
* fix(ingestion,mcp): emit-side HOC callback guards + MCP schema prettier (PR #3339 round 2)
* Address PR review feedback (#3339)
Treat `/` after return-style keywords as a regex, drop the synthetic
appRouter path prefix, and bind the create mutation via an inline callback.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Qualify query() docs so is_entry_point is promised only when the entry
symbol is among the search hits.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Emit tRPC terminals only at procedure paren depth, drop the filename
prefix on bare appRouter = router(), mask regex after if (), and cap
groupQuery member fan-out.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
De-duplicate context-chain BFS nodes reached through multiple frontier
edges, and bind tRPC identifier callbacks (`.mutation(handler)`) to the
handler symbol instead of the procedure key.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Apply LIMIT 50 after DISTINCT neighbors in the context-chain BFS, and
treat the official lowercase `procedure` builder as a tRPC procedure key.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Keep the later duplicate tRPC object-literal key so route binding matches
the handler JavaScript actually ships.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Compose same-file identifier-mounted tRPC subrouters so admin: adminRouter
emits the live admin.list path instead of an unprefixed /trpc/list.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Memoize tRPC identifier-mount paths so a depth-N chain stays linear, and
gate it with the build-free measure.mjs / baselines.json harness.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Compose identifier mounts without phantom /trpc URLs, bind wrapped and
multiline handlers, fail-close missing bench budgets, and reject query
page bounds before search.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Reject advertised MCP query bounds in group mode and chain_depth
instead of clamping or accepting non-integers.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Reject invalid groupContext chain_depth and ignore non-callable
same-file tRPC handler candidates.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Memoize live tRPC mount paths so the depth-N chain bench stays linear,
and render invalid group/MCP bounds without throwing.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Keep t.merge('prefix.', namedRouter) procedures live by recording a
zero-hop mount so the unmounted-router drop does not hide them.
Co-authored-by: Cursor <cursoragent@cursor.com>
* Address PR review feedback (#3339)
Recognize type-annotated `const adminRouter: AppRouter = t.router(`
bindings so identifier mounts still compose.
Co-authored-by: Cursor <cursoragent@cursor.com>
---------
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
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620fd18a5c
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feat(cli): reclaim leftover per-branch indexes after branch delete (#3338)
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* feat(storage): classify leftover per-branch index slots Operators need a shared enumerator for deleted-branch leftovers before clean --stale or doctor can reclaim or report them. Co-authored-by: Cursor <cursoragent@cursor.com> * feat(storage): reclaim a per-branch slot and empty branches/ Named clean --branch now shares one rm-then-registry helper so the last leftover slot can drop the empty branches directory, and a failed rm still keeps the retryable summary. Co-authored-by: Cursor <cursoragent@cursor.com> * feat(cli): add clean --stale to reclaim leftover branch indexes Operators can drop per-branch slots whose recorded branch is gone without remembering each name, while a git-list failure stays a no-op. Co-authored-by: Cursor <cursoragent@cursor.com> * feat(cli): report leftover branch indexes in doctor Operators can see cwd orphaned per-branch slots and their size, then reclaim them with clean --stale, without doctor deleting anything. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): keep unreadable branch slots out of stale reclaim A stat error other than ENOENT/ENOTDIR must not look like a missing directory, or clean --stale --force drops the registry row and leaves the slot on disk. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(cli): keep leftover-slot display helpers in the CLI layer Preview and doctor share one size formatter and an i18n path for registry-only rows, so storage no longer owns display copy. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): keep leftover reclaim moving after a registry drop failure Catch removeBranchIndex rejections so --stale continues, match doctor registry rows through canonicalizePath, and size leftover slots sequentially. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): match leftover-slot registry rows with canonicalizePath Use the repo-manager path contract so clean --stale and --branch still see registry-only leftover rows when cwd and the stored path differ. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): contain leftover-slot deletes and re-check live heads Refuse symlink and junction escapes under branches/, unlink slot links instead of removing through them, and skip --stale --force when a name is a local head again. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3338) - Bound listLocalHeads spawnSync with GIT_PATH_LIST_MAX_BUFFER. - Clarify that doctor leftover reporting is cwd-only, not registry-wide. - Drop the MCP/serve assumption from clean --stale delete failures. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3338) - Describe disk-only leftover slots in --stale help, not only recorded branches. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): stop doctor reclaim copy when heads cannot be listed Doctor was naming clean --stale for leftover rows even when git cannot list local heads, which is a no-op. Print the retry-git message instead (#3337). Co-authored-by: Cursor <cursoragent@cursor.com> * revert: drop Unreleased changelog notes from this branch Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): keep live branch pins when a tag shares the name %(refname:short) disambiguates against tags, so clean --stale treated still-local heads as leftover. Fail closed on obstructed slots and unlistable branches/ directories. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3338) Bound leftover-slot listing, revalidate paths immediately before delete, and keep registry rows when a stray disk-only directory claims a recorded branch. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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b888260a86
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Update project title in README.md
Removed the 'Akon Labs' reference from the project title in README. |
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5d32e345bb
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feat(web): drop a folder onto the analyzer to upload it (#3315)
* feat(web): drop a folder onto the analyzer to upload it The Local Folder panel of RepoAnalyzer is now a drop target. A dropped folder is walked with the File and Directory Entries API (DataTransferItem.webkitGetAsEntry), directories on the shared exclusion list are pruned before they are read, and the resulting File objects are handed to the existing filterRepoFiles -> uploadFolder -> trackJob path with webkitRelativePath set to <folder>/<rest>, so the server receives the same manifest shape the webkitdirectory picker produces. Compared with the picker, the walk never enumerates node_modules or .git, stops at the server's 20000 file cap and 64 path segments, skips unreadable entries instead of failing, and reports progress while it runs. Loose files and several folders at once are refused with a message (the server accepts one top-level folder). The walk runs under the request controller, so a mode switch or unmount aborts it; Analyze and the picker are blocked while it runs. The panel-wide target also stops the browser from navigating to a file dropped a few pixels off the button. New strings in en and zh-CN; browsers without webkitGetAsEntry keep the picker button and get an explanation. * Address PR review feedback (#3315) Clear readingCount only when this drop still owns the request controller, and skip oversized files before they count toward the 20k drop cap. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3315) Count oversized files the drop walk skips in the summary droppedCount, and correct the 250-file batch-read comment. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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ee2feb7a5b
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fix(cli): announce explicit registry alias changes (#3334)
* fix(cli): announce explicit registry alias changes * fix: handle async rename observer failures * Address PR review feedback (#3334) - Invoke onRename after withRegistryLock releases so observer I/O cannot stall the registry - Spy the rejecting observer and prove lock release via re-entrant registerRepo Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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dcb2eb5cb4
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fix(swift): resolve imports from Package.swift targets, not path segments (#3105)
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* fix(swift): match repeated SPM target prefixes * test(swift): cover repeated SPM target prefixes * test(swift): cover valid prefix before later partial match * docs(swift): clarify target grouping parity scope * docs(swift): clarify target grouping parity scope * docs(swift): clarify target grouping parity scope * fix(swift): resolve imports from Package.swift targets, not path segments Stop fabricating IMPORTS from import Foundation onto a same-named folder. Declare modules from Package.swift when the manifest is usable; keep Sources/* for grouping and fail-open folder resolve minus SDK names. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): keep empty Package.swift declarations and nested .target() deps external An inferred Sources/* folder is grouping-only. A dependency .target(name:) is not a module. Treat both as unresolved so import Foundation cannot bind to a decoy folder. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): keep implicit IMPORTS intra-group and gate linear Package.swift resolve @_exported must not paint sibling files as implicit imports. A dedicated bench pins declaration-only resolve and (t_4n/t_n)/4 linearity. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Honor member-only @_exported imports, skip comments while scanning Package.swift factories, fail-open mixed helper-built target lists, and block CoreData/CoreGraphics decoy folders on the inferred path. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Match path: "." as the package root, skip block-commented Package.swift factories, read import kind from the clause only, and skip capture tests when the optional Swift grammar is missing. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): scan Swift import-kind without nested regex backtracking CodeQL js/redos flagged the comment-skipping IMPORT_KIND_RE; a linear walk keeps the same kind tokens. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): linear Package.swift factory scan and gate Swift context parseSwiftPackageManifest re-walked every prefix for comments (O(n²) in factory count). Resume the scan and cover nested factories in one pass. Wire Swift into the import-target context arm now that resolveImportTarget is 5-arg. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Tighten Package.swift and import-text scanners: skip comments/strings, reject escapes, treat ident + [ as incomplete, and drop the unused factory-comment wrapper. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): prettier the @_exported availability fixture Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Judge Package.swift completeness from Package(...)'s own targets: argument instead of raw-text regexes, nest block comments when reading an import kind, and strip leading ./ from declared target paths. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Collect Package.swift factories only from Package(targets: [...]), fail-open on computed array elements, and treat // after a label colon as a comment. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Ignore stray factories when Package() exists but omits targets:. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3105) Require the Package-scan seen box so the always-true undefined guard goes away. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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a578747455
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fix(swift): resolve nested constructors in extensions (#3308)
* fix(swift): resolve nested constructors in extensions * fix(swift): preserve qualified extension owners * Address PR review feedback (#3308) Recover qualified Swift extension owners through public / attribute prefixes, and stop last-dot-guessing when source text is present. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): keep attribute text from stealing extension owners Bound header recovery so @available messages cannot rekey a fragment, and still inject nested types when the Class scope has no bindings. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): nest comments and keep the public extension fixture valid Review follow-up: skip nested /* */ in the header scan, put the Inner.Entry decoy in a parsed file, and mark Outer/Container/Entry public so the live fixture is valid Swift. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): recover Unicode identifiers as extension owners The header regex was ASCII-only, so extension Café.Container keyed as Caf and dropped nested-type siblings. Match ID_Start/ID_Continue segments instead. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(swift): skip raw strings and decode UTF-8 scope columns Header recovery treated #"..."# as an ordinary quote and sliced Tree-sitter byte columns as JS offsets, so a same-line Café prefix or a raw attribute message could steal or drop the extension owner. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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8fcc54e15f
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chore(deps): bump the uv group across 1 directory with 2 updates (#3330)
Bumps the uv group with 2 updates in the /eval directory: [anyio](https://github.com/agronholm/anyio) and [pygments](https://github.com/pygments/pygments). Updates `anyio` from 4.12.1 to 4.14.2 - [Release notes](https://github.com/agronholm/anyio/releases) - [Commits](https://github.com/agronholm/anyio/compare/4.12.1...4.14.2) Updates `pygments` from 2.19.2 to 2.20.0 - [Release notes](https://github.com/pygments/pygments/releases) - [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES) - [Commits](https://github.com/pygments/pygments/compare/2.19.2...2.20.0) --- updated-dependencies: - dependency-name: anyio dependency-version: 4.14.2 dependency-type: indirect dependency-group: uv - dependency-name: pygments dependency-version: 2.20.0 dependency-type: indirect dependency-group: uv ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> |
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795cf0e151
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fix(swift): resolve inherited protocol extension calls (#3309)
* fix(swift): resolve inherited protocol extension calls * fix(scope): gate inherited implicit receiver lookup * fix(swift): resolve call result types by exact callee * test(swift): align cache and local call expectations * fix(scope): reconcile replay diagnostics * fix(swift): preserve exact callable return types * fix(swift): capture throwing async call results * test(swift): refresh capture golden * test(swift): refresh scope capture baseline * fix(swift): require explicit callable returns * fix(scope): preserve duplicate return metadata * chore(scope): align index documentation * Address PR review feedback (#3309) Stamp only protocol/class-extension members (nested QN + SPM buckets), arity-narrow implicit-this across MRO, and keep Swift type peeling out of shared workspace-index via stripTypePreservingDecoration. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3309) Stamp extension members even when the extension declares a nested type, keep inherited class members ahead of protocol-extension defaults, and report replay-only interface-dispatch fan-out drops. Note: pre-existing failure in gitnexus tsc against an older gitnexus-shared dist not addressed by this PR. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3309) Walk inherited implicit-this owners nearest-first so a nearer override wins, and tighten Swift owner-stamp tests. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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f465f6fb92
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chore(deps)(deps): bump proxy-addr from 2.0.7 to 2.0.8 in /gitnexus (#3329)
Bumps [proxy-addr](https://github.com/jshttp/proxy-addr) from 2.0.7 to 2.0.8. - [Release notes](https://github.com/jshttp/proxy-addr/releases) - [Changelog](https://github.com/jshttp/proxy-addr/blob/master/HISTORY.md) - [Commits](https://github.com/jshttp/proxy-addr/compare/v2.0.7...v2.0.8) --- updated-dependencies: - dependency-name: proxy-addr dependency-version: 2.0.8 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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ba39d5c009
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feat(analyze): expose process-detection budget overrides (#3324)
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* feat(analyze): expose process-detection budget overrides (#3313) Operators can raise or lower process count, branching, trace depth, and the entry-point candidate pool via CLI, .gitnexusrc, or GITNEXUS_* without changing shipped defaults. A budget-only change re-detects flows on the next analyze without --force. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): say invalid budget flags still honor env A rejected --max-processes value was described as falling back to the built-in default even when GITNEXUS_MAX_* still won the next precedence tier. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(analyze): share process-detection defaults and skip unused walks Keep DEFAULT_CONFIG aligned with the budget resolver and count symbols only when maxProcesses is still dynamic. Co-authored-by: Cursor <cursoragent@cursor.com> * style(analyze): wrap process-detection budget files for prettier Co-authored-by: Cursor <cursoragent@cursor.com> * docs(analyze): name the real process-detection default formula Co-authored-by: Cursor <cursoragent@cursor.com> * docs(analyze): stop calling maxProcesses*2 a hard trace quota Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): say invalid env budget tokens fall back to defaults Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): recertify process-detection after in-place FTS abort (#3324) Persist processDetection.uncertified on the in-place FTS dirty stamp when the budget mismatched so a flagless retry cannot keep rewritten flows. Qualify .gitnexusrc fail-fast copy and tighten related tests. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): skip live dirty stamp on atomic incremental (#3324) POSIX atomic incremental mutates a staging copy, so stamping live incrementalInProgress before swap made a crash force-rebuild a healthy index. Align analyze --help with CLI > .gitnexusrc > env > default. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(changelog): drop the atomic-incremental dirty-stamp note The code fix stays; Unreleased no longer lists that recovery change. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): survive FTS SIGSEGV in --limit e2e CREATE_FTS_INDEX can kill the setup analyze on some WSL hosts (status null). Rebuild with --skip-fts and skip BM25-only query --limit cases unless GITNEXUS_REQUIRE_FTS=1. Refs #3324 Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): mark update-check child at import Writing refresh-started from fetch() raced a 30s poll against cold tsx boot on a loaded default-project worker. Refs #3324 Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3324) Isolate default-budget FTS crash-marker tests from GITNEXUS_MAX_* env, assert uncertify-before-FTS order and deferred flow detection on park recovery, drop the dangling "then" from entry-point help, and correct stale streamGraphEmit docs without skipping the process-detection stamp. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(changelog): drop Unreleased process-detection notes Keep the #3313 / #3322 code; Unreleased changelog matches main until release. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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9d95af9fc3
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refactor(analyze): move detected-branch sanitization off CLI config (#3325)
* refactor(analyze): load detected-branch sanitization from core git-ref Keep the never-throw helper next to validateBranchName so run-analyze no longer imports CLI config parsing. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): warn once when a checkout name cannot label the index After the write lock settles, emit a single onLog warning and keep writing the workspace slot. Pin that run-analyze does not import CLI analyze-config. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): escape hidden checkout names in the detect-reject warning Keep the rejected ref visible in onLog without replaying bidi or quote characters, and document that sanitizeDetectedBranch rethrows unexpected errors. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): keep detect-reject warnings on one line (#3325) Git-legal U+2028/U+2029 checkout names were rejected as whitespace but left raw in the new onLog warning, so the message split across two lines. Escape those code points in the formatter without changing validateBranchName. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * fix(analyze): keep C1 and Unicode spaces in detect-reject warnings Escape NEL and remaining whitespace as \uXXXX so stripControlCharacters cannot drop or disguise the rejected checkout name. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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9a68183c99
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chore(deps)(deps): bump react and @types/react in /gitnexus-web (#3299)
* chore(deps)(deps): bump react and @types/react in /gitnexus-web Bumps [react](https://github.com/react/react/tree/HEAD/packages/react) and [@types/react](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/react). These dependencies needed to be updated together. Updates `react` from 19.2.8 to 19.3.0 - [Release notes](https://github.com/react/react/releases) - [Changelog](https://github.com/react/react/blob/main/CHANGELOG.md) - [Commits](https://github.com/react/react/commits/v19.3.0/packages/react) Updates `@types/react` from 19.2.18 to 19.3.0 - [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases) - [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/react) --- updated-dependencies: - dependency-name: "@types/react" dependency-version: 19.3.0 dependency-type: direct:development update-type: version-update:semver-minor - dependency-name: react dependency-version: 19.3.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * chore(deps): align react-dom and @types/react-dom to 19.3.0 react-dom@19.2.8 peers react@^19.2.8, which excludes 19.3.0. Pair the remaining packages so the Dependabot bump is installable. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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e3f8fefd5f
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chore(deps)(deps-dev): bump vite from 8.1.5 to 8.3.0 in /gitnexus-web (#3320)
Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 8.1.5 to 8.3.0. - [Release notes](https://github.com/vitejs/vite/releases) - [Changelog](https://github.com/vitejs/vite/blob/main/packages/vite/CHANGELOG.md) - [Commits](https://github.com/vitejs/vite/commits/create-vite@8.3.0/packages/vite) --- updated-dependencies: - dependency-name: vite dependency-version: 8.3.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> |
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9a692d4957
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chore(deps)(deps): bump lucide-react in /gitnexus-web (#3319)
Bumps [lucide-react](https://github.com/lucide-icons/lucide/tree/HEAD/packages/lucide-react) from 1.31.0 to 1.44.0. - [Release notes](https://github.com/lucide-icons/lucide/releases) - [Commits](https://github.com/lucide-icons/lucide/commits/1.44.0/packages/lucide-react) --- updated-dependencies: - dependency-name: lucide-react dependency-version: 1.44.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> |
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4efe3e34f5
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chore(deps)(deps-dev): bump @testing-library/jest-dom in /gitnexus-web (#3318)
Bumps [@testing-library/jest-dom](https://github.com/testing-library/jest-dom) from 7.0.0 to 7.0.1. - [Release notes](https://github.com/testing-library/jest-dom/releases) - [Changelog](https://github.com/testing-library/jest-dom/blob/main/CHANGELOG.md) - [Commits](https://github.com/testing-library/jest-dom/compare/v7.0.0...v7.0.1) --- updated-dependencies: - dependency-name: "@testing-library/jest-dom" dependency-version: 7.0.1 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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4fd0e8c5d1
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chore(deps)(deps-dev): bump @playwright/test in /gitnexus-web (#3317) | ||
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56feb85c97
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chore: compile first-party packages with TypeScript 7 (#3311)
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* fix(web): drop TypeScript 7-incompatible tsconfig paths Remove baseUrl and the dead ../shared include so web project references typecheck under TypeScript 7. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): parse TypeScript with a TypeScript 6 API package Keep AST guards working after the named typescript package becomes 7, which no longer ships the Compiler API. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(lint): pin root TypeScript to the 6 API package Give typescript-eslint a TypeScript 6 peer so syntax-only lint still installs after CLI and web move to TypeScript 7. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(deps): compile first-party packages with TypeScript 7.0.2 Unify CLI and web on the same native compiler line as gitnexus-shared so typecheck and emit no longer split 5.x versus 7.x. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(ci): describe parent TypeScript 7 as the shared compiler Stop saying web compiles shared with TypeScript 5 now that the parent lockfile is 7. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): compile shared from parent TypeScript on Vercel and skill-evolution Stop isolated npm installs in gitnexus-shared so those paths do not pull a second TypeScript 7 optional-platform tree. Co-authored-by: Cursor <cursoragent@cursor.com> * docs: record TypeScript 7 typecheck and Dependabot major-split policy Keep contributor typecheck commands, and stop Dependabot from bumping shared onto a different TypeScript major than CLI and web. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lint): pin root TypeScript to 5.9 so npm ci satisfies eslint peers typescript-eslint 8 peers typescript below 6.0.0, so the typescript6 alias made quality lint npm ci fail with ERESOLVE. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): drop the TypeScript 6 Compiler API package TypeScript 7.0 has no classic createProgram surface, so parse-only guards now use Babel and Mode 4 uses the TypeScript 7 Checker. Co-authored-by: Cursor <cursoragent@cursor.com> * docs: align contributor setup with parent TypeScript 7 compile Stop telling clones to npm-install gitnexus-shared; CI and Vercel already emit that package from a parent lib/tsc.js shim. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(web): typecheck React JSX on TypeScript 7 with explicit DOM libs TypeScript 7 no longer implies DOM or auto-includes @types, so the web app must declare React/JSX settings while Vite keeps plugin-react. Co-authored-by: Cursor <cursoragent@cursor.com> * test: pin Vercel --include=dev and share parse-only string helpers Production npm ci omits the web TypeScript unless --include=dev is on that install. Move staticStringValue next to the other Babel walk helpers so CLI help and contract tests share one source. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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a2e1710ac0
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fix(embeddings): stop Caching embeddings OOM on large incremental analyze (#3310)
* fix(embeddings): spill cached vectors to a Float32 temp file Keep restore metadata in RAM and write embeddings once the in-memory row limit is exceeded so incremental analyze can survive large caches without a full-table number[] heap (#3306). Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): stream CodeEmbedding cache under the connection lock Spill vectors once the in-memory limit is crossed and fail the load instead of adopting an empty snapshot, so incremental analyze cannot OOM or quietly drop the restore cache (#3306). Co-authored-by: Cursor <cursoragent@cursor.com> * fix(analyze): restore cached embeddings from a streamed spill snapshot Hold row metadata across wipe, materialize 200-row batches, and treat cache-load failures as warn-and-continue so incremental analyze can preserve vectors without a full-table heap (#3306). Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3310) Loop spill writes until the full vector lands, keep materialize failures out of the insert catch and the Phase 4 hash skip-set, and assert spilled restore subsets by node id instead of scan order. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3310) Discard only this analyze run's embedding spills so a concurrent analyze on another index keeps its restore file, and isolate the default in-memory limit test from inherited env. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3310) Mark a node stale when any restore batch fails so leftover chunks are deleted and rembedded, and exercise a full-length bad-magic spill header. --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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d2a43e33df
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chore(deps): bump the codeql-action group with 3 updates (#3305)
Bumps the codeql-action group with 3 updates: [github/codeql-action/init](https://github.com/github/codeql-action), [github/codeql-action/analyze](https://github.com/github/codeql-action) and [github/codeql-action/upload-sarif](https://github.com/github/codeql-action). Updates `github/codeql-action/init` from 4.37.9 to 4.38.0 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits]( |
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a67e74cdb6
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chore(deps)(deps): bump js-yaml from 5.4.1 to 5.4.2 in /gitnexus (#3304)
Bumps [js-yaml](https://github.com/nodeca/js-yaml) from 5.4.1 to 5.4.2. - [Changelog](https://github.com/nodeca/js-yaml/blob/master/CHANGELOG.md) - [Commits](https://github.com/nodeca/js-yaml/compare/5.4.1...5.4.2) --- updated-dependencies: - dependency-name: js-yaml dependency-version: 5.4.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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f90ae7dcb2
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chore(deps)(deps): bump @langchain/google-genai in /gitnexus-web (#3303)
Bumps [@langchain/google-genai](https://github.com/langchain-ai/langchainjs) from 2.2.0 to 2.3.1. - [Release notes](https://github.com/langchain-ai/langchainjs/releases) - [Commits](https://github.com/langchain-ai/langchainjs/compare/@langchain/google-genai@2.2.0...@langchain/google-genai@2.3.1) --- updated-dependencies: - dependency-name: "@langchain/google-genai" dependency-version: 2.3.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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a7606021c9
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chore(deps)(deps): bump @langchain/openai in /gitnexus-web (#3302)
Bumps [@langchain/openai](https://github.com/langchain-ai/langchainjs) from 1.5.3 to 1.5.13. - [Release notes](https://github.com/langchain-ai/langchainjs/releases) - [Commits](https://github.com/langchain-ai/langchainjs/compare/@langchain/openai@1.5.3...@langchain/openai@1.5.13) --- updated-dependencies: - dependency-name: "@langchain/openai" dependency-version: 1.5.13 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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d2f10f3924
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chore(deps)(deps-dev): bump @types/node in /gitnexus-web (#3300)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 26.0.1 to 26.5.1. - [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases) - [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node) --- updated-dependencies: - dependency-name: "@types/node" dependency-version: 26.5.1 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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72556b0f79
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chore(deps)(deps-dev): bump @babel/types in /gitnexus-web (#3298) | ||
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8b21ce3b95
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feat(auto-sync): preserve PDG indexes across updates (#3290)
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* feat(auto-sync): preserve PDG indexes across updates * docs(auto-sync): document durable PDG synchronization * Address PR review feedback (#3290) - Correct requestedPdg state docs for threshold-skipped syncs - Defer coalesced follow-up and skip failure-threshold counts for leftover-worker / retryable lock waits - Document the pdg tri-state and caveat the 30m/5m example Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): raise Windows Ladybug #605 hang budget off the CI tail Windows 3/3 typically finishes this native race in ~15s but has a 56s tail; 60s false-positives as deadlock. Keep the POSIX 60s detector and the completion/.shadow/row-count contract. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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0ede6ae501
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fix(rust): respect Cargo target boundaries in name fallback (#3294)
* fix(rust): respect Cargo target boundaries in name fallback * fix(rust): read Cargo sources through validated file descriptors * fix(rust): require matching imports for crate-root guesses * fix(rust): require Cargo root identity for cross-target imports * fix(rust): enforce Cargo identity across fallback imports * fix(rust): keep Cargo membership on typical derive/macros (#3294) Abort only genuine unknown expansion, ignore Cargo artifact layouts instead of every `target` path segment, and require a covering import for unanswered crate-root name fallback so #3253 still holds on ordinary Rust sources. Co-authored-by: Cursor <cursoragent@cursor.com> * test(rust): gate Cargo target membership in CI (#3253) Add a parse-dispatch-rounds-style bench so derive/macro abort, target-path globs, and superlinear membership walks fail in CI instead of staying graph-invisible. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(rust): verify Cargo macro and re-export evidence * style(bench): format Cargo membership benchmark * fix(rust): require imports for cross-file root guesses --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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ebbcd5b0b4
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fix(mcp): name the indexed ref on hot read tool staleness (#3291) (#3293) | ||
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66421ef42f
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chore(deps)(deps-dev): bump @types/node in /gitnexus (#3297) | ||
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ac9a4e9abd
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fix(embeddings): keep ONNX off the install and analyze critical path (#3287)
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* fix(embeddings): isolate local ONNX inference in a child_process sidecar The analyze parent must not load onnxruntime-node. Fork a sidecar for vectors only and reap it on worker exit; keep Ladybug writes in-process. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(embeddings): share the sidecar client across MCP, serve, and sync Query hosts now use the core façade instead of a second in-process ONNX embedder. Search skips an empty table, sync reaps beside closeLbug, and ready means the stack is resolvable rather than a warm singleton. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(embeddings): refuse Intel Mac and unloadable prefix before npm heal Analyze, sync, install, and the sidecar client now consult the platform blocker before forking or downloading the optional stack. HTTP stays the escape hatch; wasm is not treated as a rescue. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(embeddings): take the ONNX stack off default npm install Pins live in gitnexusEmbeddingStack. embeddings install writes prefix overrides before npm spawn. Leftover 1.6.12 package-first trees are residual. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(publish): drop grammar source from the published tarball Every vendored grammar has 6/6 prebuilds, so files ships those plus Leiden and FTS instead of parser.c. First ship stays above 80 MiB. Co-authored-by: Cursor <cursoragent@cursor.com> * test(embeddings): match MCP missing-stack warn to the R20 copy Default install no longer calls the stack optional, so the once-per-backend stderr assertion must look for the new lead line. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): bound sidecar death, cancel writes, and publish-file guards Init-time native crashes no longer respawn a child on every query. Local embedBatch honors AbortSignal after sidecar return, MCP query() surfaces vector-lane degradation, disconnect always reaps, and the grammar prepack guard checks files globs instead of on-disk prebuilds. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(embeddings): share runtime preflight and sidecar reap helpers Analyze and embeddings-sync used the same blocker/prefix/install gate with different error routing. One assessment keeps those paths aligned without changing CLI vs thrown-error behavior. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3287) Keep a reaped sidecar from resetting its replacement, wait for dispose, tighten the publish-files guard, and stop assuming a leftover ONNX tree in CI. Co-authored-by: Cursor <cursoragent@cursor.com> * Address remaining PR review feedback (#3287) Clear the sidecar reap timeout, add init IPC slack, and isolate embeddings-sync tests from HTTP-mode env. Co-authored-by: Cursor <cursoragent@cursor.com> * test(embeddings): unstub globals after sidecar HTTP-mode tests Keep a leaked fetch stub from failing assertions out of later tests in the same file. Co-authored-by: Cursor <cursoragent@cursor.com> * test(embeddings): pin sidecar success cases off darwin/x64 The runtime blocker reads the real process platform before the fork mock, so local-success tests must not inherit an Intel Mac host. Co-authored-by: Cursor <cursoragent@cursor.com> * Address remaining PR review feedback (#3287) Keep vector degradation per query, treat leftover Intel-Mac stacks as not ready, and document that the CLI image no longer ships ONNX. Co-authored-by: Cursor <cursoragent@cursor.com> * Simplify embedding sidecar shutdown and search hot paths Drop redundant sidecar reaps and unused child helpers, and run FTS alongside semantic search. Co-authored-by: Cursor <cursoragent@cursor.com> * Address remaining PR review feedback (#3287) Share HF attempt parsing with the sidecar init deadline, abort embed waits without killing the child, and restore last init options on recreate. Co-authored-by: Cursor <cursoragent@cursor.com> * Address remaining PR review feedback (#3287) Treat sub-1 HF attempt env values as invalid, and drop leaked sidecar waiters when IPC send throws. Co-authored-by: Cursor <cursoragent@cursor.com> * Address remaining PR review feedback (#3287) Keep sidecar init on a shared chain; each waiter can abort only its own wait. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): declare embedding-table existence probe as unordered LIMIT The empty-table skip in semanticSearch is existence-only; declare it so the #2787 determinism guard stops failing coverage shard 3/3. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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dcf980581c
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chore(deps)(deps-dev): bump @types/node in /gitnexus (#3289)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 26.4.1 to 26.5.0. - [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases) - [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node) --- updated-dependencies: - dependency-name: "@types/node" dependency-version: 26.5.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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41fa74cd84
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chore(deps)(deps): bump zod from 4.4.3 to 4.5.4 in /gitnexus-web (#3282)
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Bumps [zod](https://github.com/colinhacks/zod) from 4.4.3 to 4.5.4. - [Release notes](https://github.com/colinhacks/zod/releases) - [Commits](https://github.com/colinhacks/zod/compare/v4.4.3...v4.5.4) --- updated-dependencies: - dependency-name: zod dependency-version: 4.5.4 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> |
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e9469f2149
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chore(deps)(deps-dev): bump @babel/types in /gitnexus (#3285)
Bumps [@babel/types](https://github.com/babel/babel/tree/HEAD/packages/babel-types) from 8.0.4 to 8.0.5. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-types) --- updated-dependencies: - dependency-name: "@babel/types" dependency-version: 8.0.5 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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29f4ce0592
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chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#3284)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.4 to 8.0.5. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-traverse) --- updated-dependencies: - dependency-name: "@babel/traverse" dependency-version: 8.0.5 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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dcf6bbc11d
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chore(deps)(deps-dev): bump @babel/parser in /gitnexus (#3283)
Bumps [@babel/parser](https://github.com/babel/babel/tree/HEAD/packages/babel-parser) from 8.0.4 to 8.0.5. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-parser) --- updated-dependencies: - dependency-name: "@babel/parser" dependency-version: 8.0.5 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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8a10383563
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chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#3281)
Bumps [@babel/generator](https://github.com/babel/babel/tree/HEAD/packages/babel-generator) from 8.0.0 to 8.0.5. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-generator) --- updated-dependencies: - dependency-name: "@babel/generator" dependency-version: 8.0.5 dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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9ac303ad14
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chore(deps)(deps): bump dompurify from 3.4.13 to 3.4.15 in /gitnexus-web (#3280)
Bumps [dompurify](https://github.com/cure53/DOMPurify) from 3.4.13 to 3.4.15. - [Release notes](https://github.com/cure53/DOMPurify/releases) - [Commits](https://github.com/cure53/DOMPurify/compare/3.4.13...3.4.15) --- updated-dependencies: - dependency-name: dompurify dependency-version: 3.4.15 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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57e36560af
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chore(deps)(deps): bump react-zoom-pan-pinch in /gitnexus-web (#3279)
Bumps [react-zoom-pan-pinch](https://github.com/BetterTyped/react-zoom-pan-pinch) from 4.0.3 to 4.2.0. - [Release notes](https://github.com/BetterTyped/react-zoom-pan-pinch/releases) - [Changelog](https://github.com/BetterTyped/react-zoom-pan-pinch/blob/master/CHANGELOG.md) - [Commits](https://github.com/BetterTyped/react-zoom-pan-pinch/compare/v4.0.3...v4.2.0) --- updated-dependencies: - dependency-name: react-zoom-pan-pinch dependency-version: 4.2.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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fd270fdbf5
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chore(deps)(deps-dev): bump jsdom from 29.1.1 to 30.0.1 in /gitnexus-web (#3277)
Bumps [jsdom](https://github.com/jsdom/jsdom) from 29.1.1 to 30.0.1. - [Release notes](https://github.com/jsdom/jsdom/releases) - [Commits](https://github.com/jsdom/jsdom/compare/v29.1.1...v30.0.1) --- updated-dependencies: - dependency-name: jsdom dependency-version: 30.0.1 dependency-type: direct:development update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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ed2dd6b0ad
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chore(deps)(deps): bump langchain from 1.5.4 to 1.5.11 in /gitnexus-web (#3276)
Bumps [langchain](https://github.com/langchain-ai/langchainjs) from 1.5.4 to 1.5.11. - [Release notes](https://github.com/langchain-ai/langchainjs/releases) - [Commits](https://github.com/langchain-ai/langchainjs/compare/langchain@1.5.4...langchain@1.5.11) --- updated-dependencies: - dependency-name: langchain dependency-version: 1.5.11 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
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21a52af1d4
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fix(lbug): ship FTS per-platform and recover in-place native aborts (#3274)
* fix(lbug): pin Ladybug core so Dependabot cannot ship a skewed FTS artifact The extension version is a separate upstream constant. Ignore daily core bumps and fail the pairing gate when the committed manifest does not name the installed core. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): make doctor and CI FTS gates resolve the packaged artifact Doctor and the REQUIRE_FTS file gates still treated an empty ~/.lbdb as unavailable, which would turn three CI jobs red once analyze stops installing into that tree. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): name native-abort and tuple-missing so analyze cannot mis-advise The CLI summary's trailing else treated every unknown skip reason as a missing extension. New crash and platform causes must get their own remedies, not a network-install hint. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): delete the dead read-path FTS index create ensureFTSIndex had no production callers and swallowed read-only CREATE_FTS_INDEX failures, which hid the only signal that a reader tried to write. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): vendor per-platform FTS artifacts so analyze needs no host install Keyword search depended on a CDN fetch into ~/.lbdb. Shipping the five published tuples inside the package makes air-gapped and ignore-scripts installs load the same artifact the publish gate checksums. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): load the packaged FTS artifact before any network install Analyze still required a CDN fetch into ~/.lbdb even when the package already shipped the file. FTS now path-loads the vendored tuple first and records source labels so a later truncated home copy cannot steal the diagnosis. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): diagnose a core/extension version skew instead of a missing runtime A structurally valid FTS artifact whose path version disagrees with the packaged pin must name both versions, not prescribe VC++ or OpenSSL. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): stamp an FTS phase so repair stays usable after an in-place abort A native CREATE_FTS_INDEX abort leaves no skip reason; the next run infers it from the dirty flag, and --repair-fts must not treat that phase as a half-written graph. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): park an in-place FTS crash WAL without wiping the graph An FTS abort after a successful checkpoint must reopen the live index on macOS, Windows, and Linux. Staging never parks the live WAL; readers keep today's large-WAL refusal. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): refuse read-only opens of an FTS-poisoned WAL MCP and serve cannot repair a leftover in-place abort. Fail before the native open and name --repair-fts, on macOS, Windows, and Linux. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): name a vendor-neutral Windows OpenSSL prerequisite OQ1 is unanswered here so GitNexus does not ship OpenSSL DLLs. Windows FTS now asks for a system OpenSSL 3 runtime instead of Git Bash PATH. Co-authored-by: Cursor <cursoragent@cursor.com> * test(lbug): inject the FTS vendor root and redact it on HTTP and MCP Path-loaded artifacts no longer vary with HOME. Tests pass an injected vendor tree and assert search warnings never leak a filesystem path. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(lbug): document load-only as the global FTS install default Analyze still overrides to auto. Packaged per-platform artifacts load before any network install on macOS, Windows, and Linux. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(lbug): format the FTS install-policy README table Prettier does not run on Markdown in pre-commit, so the U10 table wrap needs its own formatting commit. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): skip FTS CREATE after a persisted native abort A recovered analyze run was retrying CREATE_FTS_INDEX from skipReason alone. Keep that skip until --repair-fts, fail closed on unsupported tuples, and honor the checkpoint warrant for park/repair. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): honor checkpoint flushed warrant and align FTS tests with packaged vendor A no-op CHECKPOINT must not satisfy the FTS park warrant, and CI still asserted HOME-only FTS isolation after analyze started path-LOADing the packaged artifact. Co-authored-by: Cursor <cursoragent@cursor.com> * test(lbug): accept a nonempty incremental write set in the #2790 recovery check FTS-phase recovery can incremental-add files (changed=0, added=1). That is not the #2790 empty-diff wipe skip. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): compare FTS home versions to the core pin and tighten the publish filename gate Ladybug's ~/.lbdb/extension directory is the runtime/core version; treating it as the artifact version false-diagnosed skew. The publish guard now rejects a path-escaping filename the same way the fetch script does. Co-authored-by: Cursor <cursoragent@cursor.com> * test(lbug): seed FTS e2e fixtures from the packaged vendor artifact A machine with no ~/.lbdb copy should still run the vendor-survivorship cases; the seed no longer depends on HOME or a network install. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3274) Keep in-place FTS abort evidence after persist so a second CREATE abort cannot fail-open readers, and close the CLI, loader, embed, and e2e gaps the review called out. Note: full npm test hit Ladybug worker-pool startup failures under memory pressure; tsc and 180 targeted unit tests passed. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3274) Run the vendored-path symlink guard on the OS matrix, put e2e HOME fixtures on Ladybug's real extension layout, pin the embed crash-WAL gate before the writable open, and let analyze writers park through missing-shadow recovery. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(lbug): keep --repair-fts CI green after vendored-first FTS Never-installed warning fixtures must not inspect a packaged vendor binary, and a failed dirty restamp must not abort an otherwise successful --repair-fts run. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): give the #1169 analyze e2e the same 90s Windows budget as its sibling The first #1169 persist-meta case was still on a 60s spawn/it budget and was killed banner-only on windows-latest after the FTS warning fixture no longer failed the shard first. Co-authored-by: Cursor <cursoragent@cursor.com> * test(ci): reweight Windows shards after the FTS e2e grew Vendored-first HOME fixtures pushed fts-extension-e2e to ~6 minutes on windows-latest, so the old 146s weight packed it with skills-e2e and blew the 20-minute watchdog. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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c4ecf398de
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chore: release v1.6.12 (#3272)
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79543c8f83
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feat(storage): add configurable index storage and content retention tiers (#3060)
* feat(storage): add configurable index storage and content retention tiers Rebase #3060 onto current origin/main. Keep GITNEXUS_STORAGE_PATH, GITNEXUS_STORAGE_ROOT, and GITNEXUS_CONTENT_RETENTION, and fold in main's FTS skip, embed-session, and help-text updates. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3060) Keep legacy registry rows on the local storage fallback, resolve symlinks before the destructive-path guard, and align hook lookup with CLI branch slugs, branch-slot metadata, and longest-path match. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3060) Only list swept upload directories after a successful removal so callers cannot treat a permission or transient rm failure as gone. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3060) Document that getStoragePath may consult registered storage while this module still does not mutate the global registry. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(storage): close review findings for external indexes and retention Re-inspect ownership under the analyze lock, fail-closed when the registry file is missing, and keep skip-git hook discovery plus retention fields on HTTP/MCP list surfaces. /api/file stays 410 unless contentRetention is full. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * Address PR review feedback (#3060) Treat lock-only index dirs as empty, honor HTTP --force storage policy, and prefer registered plus branch-aware slots in hooks and augment. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3060) Keep hook fallbacks inside the current worktree, compare foreign-local slots canonically, and make storage fixtures survive ownership validation. Co-authored-by: Cursor <cursoragent@cursor.com> * Fix macOS hook test expecting realpath'd registry paths. resolveHookRepo returns the written registry path, not a filesystem realpath, so the assertion must match that. * Address gitnexus-check warnings on hook install docs and slot tests. The Cursor troubleshooting list omitted registry-query.cjs, and the writable-slot test only checked that isDirectory exists instead of that the path is a directory. * Align the HTTP catalog source-scan with skippable resolveRepo validation. resolveRepo lists fresh repos with validate: options.validateStorage !== false so DELETE can skip prune; the test still required a literal validate: true. * Harden storage path sinks so CodeQL path-injection and ReDoS alerts clear. Contain every filesystem probe inside the resolved storage slot with the inline path.relative idiom, reject filesystem-root slots, and trim slot basenames in linear time. * Settle bridge stamps before writing so CI size/mtime matches stay stable. LadybugDB can still flush into bridge.lbug after close+rename; persist whole-millisecond mtimes and wait for consecutive stats to agree so a freshly written pair matches. * Type the settled bridge stat as fs.Stats so tsc does not see bigint. Awaited<ReturnType<typeof fsp.stat>> collapsed the bigint overload and broke prepare/typecheck on CI. * Keep the bridge mtime stamp exact so same-size swaps still fail the pair check. Co-authored-by: Cursor <cursoragent@cursor.com> * Wrap the bridge stamp predicate so prettier --check stays green. Co-authored-by: Cursor <cursoragent@cursor.com> * Require a quiet interval before stamping a settled bridge file. Co-authored-by: Cursor <cursoragent@cursor.com> * Reuse shared storage and settle helpers instead of local copies. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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a8736a07d0
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fix(lbug): checkpoint race in pool-adapter.ts + pin @ladybugdb/core to 0.18.3 (#3189)
* fix(lbug): await evict-then-reopen so it can't race the checkpoint
closeOne() closed the evicted repo's shared Database with a
fire-and-forget `db.close().catch(() => {})` (no await). Both call
sites that evict-then-reopen — evictLRU() right before doInitLbug
opens the new connection, and the "idle & changed" path in initLbug —
proceeded to open the next repo's connection immediately after,
without waiting for the evicted repo's close (and the checkpoint it
triggers) to finish. On the real engine the new open can then collide
with that still-in-flight checkpoint, surfacing on any read as:
Runtime exception: Cannot open database in read-only mode while
checkpoint is in progress. Please retry later.
This reproduces reliably once more than MAX_POOL_SIZE (5) distinct
repos are queried within a short window (self-hosted deployments with
more than a handful of active repos hit it routinely), and gets worse
under genuinely concurrent requests for different repos, since nothing
serialized pool mutations across callers either.
Fix:
- closeOne / evictLRU are now async and await their internal work
(closeOne's own close() call; evictLRU's call to closeOne), closing
the race within a single initLbug call.
- The exported initLbug is wrapped in a small async mutex
(initLbugInner does the real work) so concurrent initLbug calls for
different repos serialize instead of each racing their own
evict-then-reopen against the others.
- closeLbug's two closeOne() calls are now awaited too — closeOne
becoming async meant closeLbug could resolve before pool.delete()
had actually run, which a repo-pinning test caught (isLbugReady()
briefly still true right after a resolved closeLbug()).
- closeOne now deletes the pool entry (and clears its pin, and
notifies pool-close listeners) BEFORE the awaited db.close(), not
after. Review caught that the previous order left a "zombie" entry
reachable via pool.get(repoId) — closed=true, available emptied, but
still present — for the duration of that await; a same-repo
query/init landing in that window would see isLbugReady() as true
and hit a "Connection pool integrity error" in checkout() instead of
just reopening. Deleting first removes the entry entirely, so a
concurrent caller takes the normal fresh-open path instead.
Verified two ways:
- Against the compiled bundle (`ghcr.io/abhigyanpatwari/gitnexus`,
1.6.10/1.6.11 — pool-adapter.js is byte-identical between them): an
A/B docker build with 7 tiny local repos and genuinely concurrent
(parallel, not sequential) /api/graph requests goes from 7/7 failing
to 7/7 succeeding on a freshly-analyzed pool.
- Unit tests here (mocks @ladybugdb/core the same way as
lbug-pool-pinning.test.ts): one asserts the evicted repo's close()
completes before the initLbug call that triggered the eviction
settles; another asserts closeLbug's own promise doesn't resolve
before the underlying close() does. Both gate their mock's close()
on a real short delay and were confirmed to fail against code that
drops the corresponding await.
Note: a second, deeper issue was also observed in the docker A/B
setup — repeated rounds of concurrent access show a repo that has
gone through one evict+reopen cycle can become permanently unable to
reopen for reads, identically with and without this fix. That did not
reproduce with mocks and isn't understood yet; filed separately as
#3186, which stays open and untouched by this PR — this fix closes a
real, root-caused bug on its own but does not resolve #3186 by itself.
Second review round caught a follow-up: the idle-timeout sweep calls
closeOne(repoId) directly, outside of initLbug's poolLock. Now that
closeOne deletes the pool entry before its awaited close(), an
unsynchronized idle close racing a same-repo initLbug could let that
initLbug treat the repo as absent while the idle close (and its
checkpoint) is still in flight — reopening the same class of race this
PR exists to close, just via the idle path instead of LRU eviction.
Routed the idle sweep's closeOne call through withPoolLock too, so it
serializes against initLbug the same way evictLRU already does.
(Tried to add a mocked regression test for this specific interleaving;
dropped it — the mock's dbCache-reuse path masks the difference
regardless of the fix, so it could not be made to discriminate
reliably. Fixed by direct code review instead, same as the note below
already does for the native-engine-specific checkpoint collision.)
Also removed the initLbugInner per-repoId initPromises dedup map: with
every initLbug call now serialized through poolLock, a second call for
a repoId already being initialized cannot observe a pending promise in
initPromises (the first call always fully completes, including its
finally-block cleanup, before the lock releases) — the branch was dead
code the bot correctly flagged twice.
Third review round caught two more follow-ups on the same theme (both
introduced by making the idle sweep route through poolLock):
- closeLbug()'s no-arg ("close everything") branch still calls closeOne
directly in a loop over a snapshotted pool.keys(), without the lock —
an initLbug racing that loop could register a fresh entry the
snapshot never saw, leaving it resident after a call meant to empty
the pool. Wrapped the snapshot+loop in withPoolLock.
- The idle timer callback can now sit queued behind an in-progress
initLbug before its turn arrives, and that init (or a concurrent
touchRepo()) can refresh lastUsed in the meantime — so the pre-lock
idleness check taken when the timer fired can be stale by the time
it actually runs. Re-check lastUsed/checkedOut again inside the lock,
right before closing, instead of trusting the outer snapshot.
* fix(deps): pin @ladybugdb/core back to 0.18.3
Bisected the "checkpoint is in progress" symptom (root cause #2, not
touched by the pool-adapter.ts fix in the previous commit) down to a
single dependency-version-bump commit with zero application code
changes:
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ceaff27c1e
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fix(parse-cache): retire a chunk whose durable generation could not be reset (#3271)
* fix(parse-cache): retire a chunk whose durable generation could not be reset #3200 skipped the parse-cache write when `prepareDurableParsedFileChunk` failed, but the chunk hash was already in `usedKeys` from the lookup. When a previous generation existed on disk — reachable because the coherence gate re-dispatches a chunk whose `.v8` shard is live but whose durable shards are unreadable — `saveParseCache` copied that old shard forward, and the durable prune, which keeps exactly the saved keys, retained the mixed directory. The next run then served a warm hit out of a directory the previous run had already decided it could not account for. Retire the hash instead of only skipping the write: - `ParseCache.staleKeys` is a transient set that `saveParseCache` filters out of its key list. Filtering at save is what makes it survive the post-parse key merges in run-analyze (#2106 sibling fold, unreadable-meta retention), and it reaches both stores at once because the durable prune keeps exactly the keys `saveParseCache` returns. - The hash is retired at the reset-failure site, which runs unconditionally. The parse-cache write branch sits behind `rawResults.length > 0`, so a chunk whose worker round returns nothing would never have been retired there. - Worker-quarantined chunks get the same treatment for the same reason: they also reach the save with no in-memory entry, which is what triggers the copy-forward. That branch was previously unreachable when the worker died on the chunk and returned no results. - Guard the durable prune's non-survivor `fs.rm`. The causes that break the reset break that delete too, and it sat outside the validation try — one undeletable directory aborted the loop and cost every remaining chunk its index entry. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> * fix(review): apply review findings Retire a chunk only when a generation nobody cleared is still on disk. `prepareDurableParsedFileChunk` is rm-then-mkdir, and the catch could not tell the two apart: an rm that succeeded before a failing mkdir leaves NO directory, so the workers recreate it and write a clean generation. Retiring there discarded a good `.v8` for no safety gain — and under a correlated failure (an empty durable index turns every chunk into a re-dispatched miss, then a descriptor burst rejects the resets en masse) it would have wiped both shared stores for every branch, where the pre-#3204 posture cost only the writes. `durableChunkHasStaleShards` is the discriminator. Finish the delete guard on the path that runs before it. The staged→live overlay in `mergeStagedDurableParsedFileStore` awaited `replaceDurableChunkDir` unguarded, so on the cold-rebuild path one undeletable directory threw out of the merge before the prune ever ran — the durable index was never rewritten and a retired chunk kept its directory. Same log-and-continue treatment, plus best-effort handling of the two `.replacing` backup removals. Aggregate the prune's delete-failure warning: a store-wide cause hits every non-survivor, and one line per directory buries the message that matters. Tests: - Guard the chmod-based prune test with the repo's `skipIf` for root/Windows and assert the directory survived, so it cannot pass vacuously where the delete succeeds. - Add a two-chunk control: one chunk's reset fails, and the sibling must stay warm through the next run. One chunk plus a global spawn marker could not tell "retires the failing chunk" from "retires everything". - Add the rm-succeeded/mkdir-failed case, which must NOT retire. - Model both post-parse merges in the R4 test (the sibling fold re-adds the key, the unreadable-meta fallback unions `entries`), and move the in-memory `entries` assertion to a direct helper test — the sharded path never populates `entries`, so the old assertion proved nothing. - Type the cache factory as `ParseCache`; the `staleKeys` assertions were TS2339 and `?? false` read as a pass regardless. - Register the store test in the cross-platform filesystem list. Correct two comments that still described a quarantined chunk by the premise this fix disproves. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> * fix(review): stop swallowing the backup removal in replaceDurableChunkDir Swallowing that `fs.rm` manufactured the very hazard this PR removes. When a non-empty `${to}.replacing` survives, the following `fs.rename(to, backup)` cannot overwrite it and is suppressed as "dest was missing", so `backedUp` stays false and the `fs.cp(from, to)` fallback merges the staged generation INTO the live directory — old shards alongside new, which the prune then indexes as one valid survivor. Let it throw; the per-entry guard added to `mergeStagedDurableParsedFileStore` already stops one such chunk from costing the others their prune. The post-publish backup cleanup stays best-effort, where an undeletable leftover really is litter. Also: - Make the sibling-isolation test perform the run its title claims. It asserted index membership and stopped; an index entry does not exercise the warm-hit path, so it would have passed even if the sibling re-dispatched. Each chunk now runs alone so the single spawn marker names which one re-parsed. - Correct two comments that outran the implementation: retirement is gated on shards actually surviving, and an undeletable directory is dropped from the index rather than removed from disk. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com> |
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3f5ca8cdb7
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fix(storage): guard stale file-lock reclamation (#3234)
* fix(storage): guard stale file-lock reclamation * fix(storage): close lock recovery failure paths * Address PR review feedback (#3234) - Flush the lock-child stderr diagnostic before process.exit - Treat explicit NaN timeouts as the default ceiling - Document non-retryable guard timeouts on the worker IPC contract Co-authored-by: Cursor <cursoragent@cursor.com> * fix(storage): stop mislabeling live lock waits as orphan recovery A brief peer inspect must not attach guardPath or send operators to RUNBOOK delete steps. Refuse lock-free embeddings sync, stop --watch only on a true guard timeout, and drop an unreadable self-created guard before failing closed. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * Address PR review feedback (#3234) - Verify lock/guard absence before degrading a denied main-lock create - Launch the third contender from unlinkSync, not the dead rename path - Document group-lock timeouts for unrecoverable guard leftovers Co-authored-by: Cursor <cursoragent@cursor.com> * style: prettier index-lock reclaim guard tests Co-authored-by: Cursor <cursoragent@cursor.com> * fix(storage): treat O_EXCL as the lock-file presence check CodeQL flagged existsSync-then-wx on analyze.lock. Create with wx first and only reclaim unreadable leftovers after grace, so a successor is never unlinked from a lost race. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |