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vacuum() and the APFS-cloning offline backup path both close and reopen the SQLite connection, which drops all ATTACHed databases -- including the in-memory "indexing" alias used for the fulltextWords scratch table set up in Fulltext.init(). Once the connection is reopened, indexing queries fail with "no such table: indexing.fulltextWords", and indexItems()'s ignoreErrors path routes the error to logError(), so indexing silently stops working for the rest of the session. Add an onConnect() hook on Zotero.DBConnection for per-connection state that doesn't persist across reopens, and use it from Fulltext.init() to re-attach the indexing DB on each reconnect. Regression sources: -67288047f3("Use APFS cloning for file copies on macOS") flips online idle backups to offline-with-clone on APFS, so every idle backup interval (24h default) closes and reopens the connection. Affects Mac users on APFS. -b27c4cb023("Enable SQLite WAL mode and add periodic VACUUM INTO") adds the vacuum path, which closes and reopens on the first idle period in a session that passes the freelist/time gates. Affects all users with sufficient DB churn, roughly once per 14 days. https://forums.zotero.org/discussion/131576/debug-id-d848621212-indexing-of-pdfs-fail-zotero-9-0-3 https://forums.zotero.org/discussion/131718/possible-bug-regression-report-search-unusable-on-macos-zotero-9-0-3-with-large-library (cherry picked from commit70c4cadab1)
400 lines
14 KiB
JavaScript
400 lines
14 KiB
JavaScript
describe("Zotero.FullText", function () {
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describe("Indexing", function () {
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beforeEach(function () {
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Zotero.Prefs.clear('fulltext.textMaxLength');
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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});
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after(function () {
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Zotero.Prefs.clear('fulltext.textMaxLength');
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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});
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describe("#indexItems()", function () {
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it("should index a text file by default", async function () {
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var item = await importFileAttachment('test.txt');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_INDEXED
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);
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})
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it("should skip indexing of a text file if fulltext.textMaxLength is 0", async function () {
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Zotero.Prefs.set('fulltext.textMaxLength', 0);
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var item = await importFileAttachment('test.txt');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_UNINDEXED
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);
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})
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it("should index a PDF by default", async function () {
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var item = await importFileAttachment('test.pdf');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_INDEXED
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);
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})
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it("should skip indexing of a PDF if fulltext.textMaxLength is 0", async function () {
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Zotero.Prefs.set('fulltext.textMaxLength', 0);
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var item = await importFileAttachment('test.pdf');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_UNINDEXED
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);
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})
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it("should skip indexing of a PDF if fulltext.pdfMaxPages is 0", async function () {
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Zotero.Prefs.set('fulltext.pdfMaxPages', 0);
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var item = await importFileAttachment('test.pdf');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_UNINDEXED
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);
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})
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it("should skip indexing of an EPUB if fulltext.textMaxLength is 0", async function () {
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Zotero.Prefs.set('fulltext.textMaxLength', 0);
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var item = await importFileAttachment('recognizeEPUB_test_content.epub');
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_UNINDEXED
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);
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});
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it("should still work after the DB connection is reopened", async function () {
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var item = await importFileAttachment('test.txt');
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await Zotero.DB.vacuum({ force: true });
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await Zotero.Fulltext.indexItems([item.id]);
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assert.equal(
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((await Zotero.Fulltext.getIndexedState(item))),
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Zotero.Fulltext.INDEX_STATE_INDEXED
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);
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});
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describe("Indexing with HiddenBrowser", () => {
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it("should index attachment as its attachmentContentType when supported", async function () {
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// Firefox would normally load this as text/x-shellscript, but we detect text/plain
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let item = await importFileAttachment('test.sh');
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assert.equal(item.attachmentContentType, 'text/plain');
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assert.equal(await Zotero.Fulltext.getIndexedState(item), Zotero.Fulltext.INDEX_STATE_INDEXED);
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});
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it("should index attachment as text/plain when its text/* attachmentContentType is unsupported", async function () {
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// Now we force text/x-shellscript, which the HiddenBrowser would normally refuse to load
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// It should still load, because we fall back to text/plain from an unsupported text/* content type
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let item = await importFileAttachment('test.sh', { contentType: 'text/x-shellscript' });
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assert.equal(item.attachmentContentType, 'text/x-shellscript');
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assert.equal(await Zotero.Fulltext.getIndexedState(item), Zotero.Fulltext.INDEX_STATE_INDEXED);
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});
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it("should not index attachment with non-text attachmentContentType", async function () {
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let item = await importFileAttachment('test.txt', { contentType: 'image/png' });
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assert.equal(item.attachmentContentType, 'image/png');
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assert.equal(await Zotero.Fulltext.getIndexedState(item), Zotero.Fulltext.INDEX_STATE_UNINDEXED);
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});
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});
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});
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describe("#indexPDF()", function () {
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it("should create cache files for linked attachments in storage directory", async function () {
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var filename = 'test.pdf';
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var file = OS.Path.join(getTestDataDirectory().path, filename);
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var tempDir = await getTempDirectory();
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var linkedFile = OS.Path.join(tempDir, filename);
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await OS.File.copy(file, linkedFile);
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var item = await Zotero.Attachments.linkFromFile({ file: linkedFile });
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var storageDir = Zotero.Attachments.getStorageDirectory(item).path;
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assert.isTrue(await OS.File.exists(storageDir));
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assert.isTrue(await OS.File.exists(OS.Path.join(storageDir, '.zotero-ft-cache')));
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assert.isFalse(await OS.File.exists(OS.Path.join(storageDir, filename)));
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});
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});
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});
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describe("#getUnsyncedContent()", function () {
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it("should get content that hasn't been uploaded", async function () {
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var toSync = [];
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var group = await getGroup();
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var add = async function (options = {}) {
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let item = await createDataObject('item', { libraryID: options.libraryID });
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let attachment = new Zotero.Item('attachment');
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if (options.libraryID) {
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attachment.libraryID = options.libraryID;
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}
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attachment.parentItemID = item.id;
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attachment.attachmentLinkMode = 'imported_file';
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attachment.attachmentContentType = 'text/plain';
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attachment.attachmentCharset = 'utf-8';
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attachment.attachmentFilename = 'test.txt';
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if (options.synced) {
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attachment.synced = true;
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}
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await attachment.saveTx();
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await Zotero.Attachments.createDirectoryForItem(attachment);
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let path = attachment.getFilePath();
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let content = new Array(10).fill("").map(x => Zotero.Utilities.randomString()).join(" ");
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await Zotero.File.putContentsAsync(path, content);
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if (!options.skip) {
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toSync.push({
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item: attachment,
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content,
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indexedChars: content.length,
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indexedPages: 0
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});
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}
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};
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await add({ synced: true });
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await add({ synced: true });
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// Unsynced attachment shouldn't uploaded
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await add({ skip: true });
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// Attachment in another library shouldn't be uploaded
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await add({ libraryID: group.libraryID, synced: true, skip: true });
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// PDF attachment
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var pdfAttachment = await importFileAttachment('test.pdf');
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pdfAttachment.synced = true;
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await pdfAttachment.saveTx();
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toSync.push({
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item: pdfAttachment,
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content: "Zotero [zoh-TAIR-oh] is a free, easy-to-use tool to help you collect, "
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+ "organize, cite, and share your research sources.",
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indexedChars: 0,
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indexedPages: 1
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});
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await Zotero.Fulltext.indexItems(toSync.map(x => x.item.id));
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var data = await Zotero.FullText.getUnsyncedContent(Zotero.Libraries.userLibraryID);
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assert.lengthOf(data, 3);
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let contents = toSync.map(x => x.content);
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for (let d of data) {
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assert.include(contents, d.content);
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let pos = contents.indexOf(d.content);
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assert.equal(d.indexedChars, toSync[pos].indexedChars);
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assert.equal(d.indexedPages, toSync[pos].indexedPages);
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}
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});
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it("should mark PDF attachment content as missing if cache file doesn't exist", async function () {
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var item = await importFileAttachment('test.pdf');
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item.synced = true;
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await item.saveTx();
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await Zotero.Fulltext.indexItems([item.id]);
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await OS.File.remove(Zotero.Fulltext.getItemCacheFile(item).path);
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var sql = "SELECT synced FROM fulltextItems WHERE itemID=?";
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var synced = await Zotero.DB.valueQueryAsync(sql, item.id);
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assert.equal(synced, Zotero.Fulltext.SYNC_STATE_UNSYNCED);
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var indexed = await Zotero.Fulltext.getIndexedState(item);
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assert.equal(indexed, Zotero.Fulltext.INDEX_STATE_INDEXED);
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await Zotero.Fulltext.getUnsyncedContent(item.libraryID);
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synced = await Zotero.DB.valueQueryAsync(sql, item.id);
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assert.equal(synced, Zotero.Fulltext.SYNC_STATE_MISSING);
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indexed = await Zotero.Fulltext.getIndexedState(item);
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assert.equal(indexed, Zotero.Fulltext.INDEX_STATE_UNINDEXED);
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});
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})
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describe("#setItemContent()", function () {
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before(() => {
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// Disable PDF indexing
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Zotero.Prefs.set('fulltext.pdfMaxPages', 0);
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});
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after(() => {
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// Re-enable PDF indexing
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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});
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it("should store data in .zotero-ft-unprocessed file", async function () {
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var item = await importFileAttachment('test.pdf');
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var processorCacheFile = Zotero.Fulltext.getItemProcessorCacheFile(item).path;
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var version = 5;
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await Zotero.Fulltext.setItemContent(
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item.libraryID,
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item.key,
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{
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content: "Test",
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indexedPages: 4,
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totalPages: 4
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},
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version
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);
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assert.equal(await Zotero.Fulltext.getItemVersion(item.id), 0);
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assert.equal(
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await Zotero.DB.valueQueryAsync("SELECT synced FROM fulltextItems WHERE itemID=?", item.id),
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Zotero.FullText.SYNC_STATE_TO_PROCESS
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);
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assert.isTrue(await OS.File.exists(processorCacheFile));
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});
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it("should update the version if the local version is 0 but the text matches", async function () {
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var item = await importFileAttachment('test.pdf');
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await Zotero.DB.queryAsync(
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"REPLACE INTO fulltextItems (itemID, version, indexedPages, totalPages, synced) "
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+ "VALUES (?, 0, 4, 4, ?)",
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[item.id, Zotero.FullText.SYNC_STATE_UNSYNCED]
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);
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var processorCacheFile = Zotero.FullText.getItemProcessorCacheFile(item).path;
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var itemCacheFile = Zotero.FullText.getItemCacheFile(item).path;
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await Zotero.File.putContentsAsync(itemCacheFile, "Test");
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var version = 5;
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await Zotero.FullText.setItemContent(
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item.libraryID,
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item.key,
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{
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content: "Test",
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indexedPages: 4,
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totalPages: 4
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},
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version
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);
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assert.equal(await Zotero.FullText.getItemVersion(item.id), version);
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assert.equal(
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await Zotero.DB.valueQueryAsync("SELECT synced FROM fulltextItems WHERE itemID=?", item.id),
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Zotero.FullText.SYNC_STATE_IN_SYNC
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);
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var { indexedPages, total } = await Zotero.FullText.getPages(item.id);
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assert.equal(indexedPages, 4);
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assert.equal(total, 4);
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assert.isFalse(await OS.File.exists(processorCacheFile));
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});
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});
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describe("#rebuildIndex()", function () {
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afterEach(() => {
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// Re-enable PDF indexing
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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});
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it("should process queued full-text content in indexedOnly mode", async function () {
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Zotero.Prefs.set('fulltext.pdfMaxPages', 0);
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var item = await importFileAttachment('test.pdf');
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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var version = 5;
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await Zotero.FullText.setItemContent(
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item.libraryID,
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item.key,
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{
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content: "Test",
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indexedPages: 4,
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totalPages: 4
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},
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version
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);
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var processorCacheFile = Zotero.FullText.getItemProcessorCacheFile(item).path;
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var itemCacheFile = Zotero.FullText.getItemCacheFile(item).path;
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assert.isTrue(await OS.File.exists(processorCacheFile));
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await Zotero.FullText.rebuildIndex(true);
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// .zotero-ft-unprocessed should have been deleted
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assert.isFalse(await OS.File.exists(processorCacheFile));
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// .zotero-ft-cache should now exist
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assert.isTrue(await OS.File.exists(itemCacheFile));
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assert.equal(await Zotero.FullText.getItemVersion(item.id), version);
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assert.equal(
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await Zotero.DB.valueQueryAsync("SELECT synced FROM fulltextItems WHERE itemID=?", item.id),
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Zotero.FullText.SYNC_STATE_IN_SYNC
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);
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var { indexedPages, total } = await Zotero.FullText.getPages(item.id);
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assert.equal(indexedPages, 4);
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assert.equal(total, 4);
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});
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it("should ignore queued full-text content in non-indexedOnly mode", async function () {
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Zotero.Prefs.set('fulltext.pdfMaxPages', 0);
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var item = await importFileAttachment('test.pdf');
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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var version = 5;
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await Zotero.FullText.setItemContent(
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item.libraryID,
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item.key,
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{
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content: "Test",
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indexedPages: 4,
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totalPages: 4
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},
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version
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);
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var processorCacheFile = Zotero.FullText.getItemProcessorCacheFile(item).path;
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var itemCacheFile = Zotero.FullText.getItemCacheFile(item).path;
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assert.isTrue(await OS.File.exists(processorCacheFile));
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await Zotero.FullText.rebuildIndex();
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// .zotero-ft-unprocessed should have been deleted
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assert.isFalse(await OS.File.exists(processorCacheFile));
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// .zotero-ft-cache should now exist
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assert.isTrue(await OS.File.exists(itemCacheFile));
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// Processor cache file shouldn't have been used, and full text should be marked for
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// syncing
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assert.equal(await Zotero.FullText.getItemVersion(item.id), 0);
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assert.equal(
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await Zotero.DB.valueQueryAsync(
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"SELECT synced FROM fulltextItems WHERE itemID=?",
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item.id
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),
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Zotero.FullText.SYNC_STATE_UNSYNCED
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);
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var { indexedPages, total } = await Zotero.FullText.getPages(item.id);
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assert.equal(indexedPages, 1);
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assert.equal(total, 1);
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});
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// This shouldn't happen, but before 5.0.85 items reindexed elsewhere could clear local stats
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it("shouldn't clear indexed items with missing file and no stats", async function () {
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Zotero.Prefs.set('fulltext.pdfMaxPages', 1);
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var item = await importFileAttachment('test.pdf');
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Zotero.Prefs.clear('fulltext.pdfMaxPages');
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var itemCacheFile = Zotero.FullText.getItemCacheFile(item).path;
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assert.isTrue(await OS.File.exists(itemCacheFile));
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var { indexedPages, total } = await Zotero.FullText.getPages(item.id);
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assert.equal(indexedPages, 1);
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assert.equal(total, 1);
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await Zotero.DB.queryAsync(
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"UPDATE fulltextItems SET indexedPages=NULL, totalPages=NULL WHERE itemID=?",
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item.id
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);
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await Zotero.FullText.rebuildIndex();
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// .zotero-ft-cache should still exist
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assert.isTrue(await OS.File.exists(itemCacheFile));
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assert.equal(
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await Zotero.DB.valueQueryAsync(
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"SELECT COUNT(*) FROM fulltextItems WHERE itemID=?",
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item.id
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),
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1
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);
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});
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});
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})
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