featurebase/view.go
Matthew Jaffee 3e222d8771 tweak to locking which should avoid stall/deadlock w/ mutex check
The view.go change is straightforward and fairly obviously more
correct.

The field.go change avoids holding the field read lock for the
duration of the mutex check request. The thinking was that while the
read lock was held something else was attempting to get a write lock,
which blocked all other read locks and something was getting into a
loop. Seebs might have a more detailed explanation, but that's as far
as my understanding goes at the moment. I believe this change is safe
though as we don't read/modify any field level data structures after
grabbing the standard view.
2021-09-16 14:07:31 -05:00

665 lines
17 KiB
Go

// Copyright 2017 Pilosa Corp.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package pilosa
import (
"context"
"fmt"
"math"
"os"
"path/filepath"
"runtime"
"strings"
"sync"
"sync/atomic"
"time"
"github.com/molecula/featurebase/v2/pql"
"github.com/molecula/featurebase/v2/roaring"
"github.com/molecula/featurebase/v2/stats"
"github.com/molecula/featurebase/v2/testhook"
. "github.com/molecula/featurebase/v2/vprint" // nolint:staticcheck
"github.com/pkg/errors"
"golang.org/x/sync/errgroup"
)
// View layout modes.
const (
viewStandard = "standard"
viewBSIGroupPrefix = "bsig_"
)
// view represents a container for field data.
type view struct {
mu sync.RWMutex
path string
index string
field string
name string
qualifiedName string
holder *Holder
idx *Index
fieldType string
cacheType string
cacheSize uint32
// Fragments by shard.
fragments map[uint64]*fragment
broadcaster broadcaster
stats stats.StatsClient
knownShards *roaring.Bitmap
knownShardsCopied uint32
}
// newView returns a new instance of View.
func newView(holder *Holder, path, index, field, name string, fieldOptions FieldOptions) *view {
PanicOn(ValidateName(name))
return &view{
path: path,
index: index,
field: field,
name: name,
qualifiedName: FormatQualifiedViewName(index, field, name),
holder: holder,
fieldType: fieldOptions.Type,
cacheType: fieldOptions.CacheType,
cacheSize: fieldOptions.CacheSize,
fragments: make(map[uint64]*fragment),
broadcaster: NopBroadcaster,
stats: stats.NopStatsClient,
knownShards: roaring.NewSliceBitmap(),
}
}
// addKnownShard adds a known shard to v, which you should only do when
// holding the lock -- but that's probably a given, since you're presumably
// calling it because you were potentially altering the shard list. Since
// you have the write lock, availableShards() can't be happening right now.
// Either it'll get the previous value or the next value of knownShards,
// and either is probably fine.
//
// This means that we only copy the (probably tiny) bitmap if we're
// modifying it after it's been read. If it never gets read, knownShardsCopied
// never changes. If it gets read, then we treat that one as immutable --
// we never modify it again, because the field code might be reading it, so
// we make a fresh copy. Since shards almost never change, the expected
// behavior is that we call addKnownShard a lot during initial startup,
// when knownShardsCopied is 0, and then after that calls to availableShards
// return that bitmap, and set knownShardsCopied to 1, but we rarely modify
// the list.
func (v *view) addKnownShard(shard uint64) {
v.notifyIfNewShard(shard)
if atomic.LoadUint32(&v.knownShardsCopied) == 1 {
v.knownShards = v.knownShards.Clone()
atomic.StoreUint32(&v.knownShardsCopied, 0)
}
_, err := v.knownShards.Add(shard)
PanicOn(err)
}
// removeKnownShard removes a known shard from v. See the notes on addKnownShard.
func (v *view) removeKnownShard(shard uint64) {
if atomic.LoadUint32(&v.knownShardsCopied) == 1 {
v.knownShards = v.knownShards.Clone()
atomic.StoreUint32(&v.knownShardsCopied, 0)
}
_, _ = v.knownShards.Remove(shard)
}
// openWithShardSet opens the view. Importantly, it
// only opens the fragments that have data. This saves
// a ton of time. If you have no data and want a new
// view, call view.openEmpty().
func (v *view) openWithShardSet(ss *shardSet) error {
if v.knownShards == nil {
v.knownShards = roaring.NewSliceBitmap()
}
// Never keep a cache for field views.
if strings.HasPrefix(v.name, viewBSIGroupPrefix) {
v.cacheType = CacheTypeNone
}
shards := ss.CloneMaybe()
var frags []*fragment
for shard := range shards {
frag := v.newFragment(shard)
frags = append(frags, frag)
v.fragments[frag.shard] = frag
}
nGoro := runtime.NumCPU()
if v.idx.holder.txf.TxType() != "roaring" {
nGoro = nGoro / 4
}
if nGoro < 4 {
nGoro = 4
}
pj := newParallelJobs(nGoro)
for i := range frags {
// create a new variable frag on each time through
// the loop (instead of i, frag := range frags)
// so that the closure run on the
// goroutine has its own variable.
frag := frags[i]
accepted := pj.run(func(worker int) error {
if err := frag.Open(); err != nil {
return fmt.Errorf("open fragment: shard=%d, err=%s", frag.shard, err)
}
return nil
})
if !accepted {
// have error/shutting down the pj, so stop
break
}
}
err := pj.waitForFinish()
if err != nil {
return err
}
// serial, not parallel, because no locking inside addKnownShard at the moment.
// TODO(jea): is this slow on a cluster? can we optimize it
// by running it on a goroutine in the background?
for shard := range shards {
v.addKnownShard(shard)
}
_ = testhook.Opened(v.holder.Auditor, v, nil)
v.holder.Logger.Debugf("successfully opened index/field/view: %s/%s/%s", v.index, v.field, v.name)
return nil
}
// openEmpty opens and initializes a new view that has no
// data. If you have data already, then use view.openWithShardSet()
func (v *view) openEmpty() error {
if v.knownShards == nil {
v.knownShards = roaring.NewSliceBitmap()
}
// Never keep a cache for field views.
if strings.HasPrefix(v.name, viewBSIGroupPrefix) {
v.cacheType = CacheTypeNone
}
if err := func() error {
// Ensure the view's path exists.
v.holder.Logger.Debugf("ensure view path exists: %s", v.path)
err := os.MkdirAll(v.path, 0777)
if err != nil {
return errors.Wrap(err, "creating view directory")
}
err = os.MkdirAll(filepath.Join(v.path, "fragments"), 0777)
if err != nil {
return errors.Wrap(err, "creating fragments directory")
}
v.holder.Logger.Debugf("open fragments for index/field/view: %s/%s/%s", v.index, v.field, v.name)
return nil
}(); err != nil {
v.close()
return err
}
_ = testhook.Opened(v.holder.Auditor, v, nil)
v.holder.Logger.Debugf("successfully opened index/field/view: %s/%s/%s", v.index, v.field, v.name)
return nil
}
var workQueue = make(chan struct{}, runtime.NumCPU()*2)
// close closes the view and its fragments.
func (v *view) close() error {
v.mu.Lock()
defer v.mu.Unlock()
defer func() {
_ = testhook.Closed(v.holder.Auditor, v, nil)
}()
// Close all fragments.
eg, ctx := errgroup.WithContext(context.Background())
fragLoop:
for _, loopFrag := range v.fragments {
select {
case <-ctx.Done():
break fragLoop
default:
frag := loopFrag
workQueue <- struct{}{}
eg.Go(func() error {
defer func() {
<-workQueue
}()
if err := frag.Close(); err != nil {
return errors.Wrap(err, "closing fragment")
}
return nil
})
}
}
err := eg.Wait()
v.fragments = make(map[uint64]*fragment)
v.knownShards = nil
return err
}
// flags returns a set of flags for the underlying fragments.
func (v *view) flags() byte {
var flag byte
if v.fieldType == FieldTypeInt || v.fieldType == FieldTypeDecimal || v.fieldType == FieldTypeTimestamp {
flag |= roaringFlagBSIv2
}
return flag
}
// availableShards returns a bitmap of shards which contain data.
func (v *view) availableShards() *roaring.Bitmap {
// A read lock prevents anything with the write lock from being
// active, so anything that's calling add/removeKnownShard won't
// be doing it here. But we do need to indicate that we came
// through, but we don't want to block on a write lock. So we
// use an atomic for that.
v.mu.RLock()
defer v.mu.RUnlock()
atomic.StoreUint32(&v.knownShardsCopied, 1)
return v.knownShards
}
// Fragment returns a fragment in the view by shard.
func (v *view) Fragment(shard uint64) *fragment {
v.mu.RLock()
defer v.mu.RUnlock()
return v.fragments[shard]
}
// allFragments returns a list of all fragments in the view.
func (v *view) allFragments() []*fragment {
v.mu.RLock()
defer v.mu.RUnlock()
other := make([]*fragment, 0, len(v.fragments))
for _, fragment := range v.fragments {
other = append(other, fragment)
}
return other
}
// recalculateCaches recalculates the cache on every fragment in the view.
func (v *view) recalculateCaches() {
for _, fragment := range v.allFragments() {
fragment.RecalculateCache()
}
}
// CreateFragmentIfNotExists returns a fragment in the view by shard.
func (v *view) CreateFragmentIfNotExists(shard uint64) (*fragment, error) {
v.mu.Lock()
defer v.mu.Unlock()
// Find fragment in cache first.
if frag := v.fragments[shard]; frag != nil {
return frag, nil
}
// Initialize and open fragment.
frag := v.newFragment(shard)
if err := frag.Open(); err != nil {
return nil, errors.Wrap(err, "opening fragment")
}
v.fragments[shard] = frag
v.addKnownShard(shard)
return frag, nil
}
func (v *view) notifyIfNewShard(shard uint64) {
// if single node, don't bother serializing only to drop it b/c
// we won't send to ourselves.
srv, ok := v.broadcaster.(*Server)
if ok && len(srv.cluster.Nodes()) == 1 {
return
}
if v.knownShards.Contains(shard) { //checks the fields remoteShards bitmap to see if broadcast needed
return
}
broadcastChan := make(chan struct{})
go func() {
err := v.holder.sendOrSpool(&CreateShardMessage{
Index: v.index,
Field: v.field,
Shard: shard,
})
if err != nil {
v.holder.Logger.Errorf("broadcasting create shard: %v", err)
}
close(broadcastChan)
}()
timer := time.NewTimer(50 * time.Millisecond)
select {
case <-broadcastChan:
timer.Stop()
case <-timer.C:
v.holder.Logger.Debugf("broadcasting create shard took >50ms")
}
}
func (v *view) newFragment(shard uint64) *fragment {
fld := v.idx.Field(v.field)
spec := fragSpec{
index: v.idx,
field: fld,
view: v,
}
if fld == nil {
// The backup plan.
// For tests that do incomplete setup, like making
// a view without a field.
spec.fieldstr = v.field
}
frag := newFragment(v.holder, spec, shard, v.flags())
frag.CacheType = v.cacheType
frag.CacheSize = v.cacheSize
frag.stats = v.stats
if v.fieldType == FieldTypeMutex {
frag.mutexVector = newRowsVector(frag)
} else if v.fieldType == FieldTypeBool {
frag.mutexVector = newBoolVector(frag)
}
return frag
}
// deleteFragment removes the fragment from the view.
func (v *view) deleteFragment(shard uint64) error {
v.mu.Lock()
defer v.mu.Unlock()
f := v.fragments[shard]
if f == nil {
return ErrFragmentNotFound
}
v.holder.Logger.Infof("delete fragment: (%s/%s/%s) %d", v.index, v.field, v.name, shard)
idx := f.holder.Index(v.index)
f.Close()
if err := idx.holder.txf.DeleteFragmentFromStore(f.index(), f.field(), f.view(), f.shard, f); err != nil {
return errors.Wrap(err, "DeleteFragment")
}
delete(v.fragments, shard)
v.removeKnownShard(shard)
return nil
}
// row returns a row for a shard of the view.
func (v *view) row(txOrig Tx, rowID uint64) (*Row, error) {
row := NewRow()
for _, frag := range v.allFragments() {
tx := txOrig
if NilInside(tx) {
tx = v.idx.holder.txf.NewTx(Txo{Write: !writable, Index: v.idx, Fragment: frag, Shard: frag.shard})
defer tx.Rollback()
}
fr, err := frag.row(tx, rowID)
if err != nil {
return nil, err
} else if fr == nil {
continue
}
row.Merge(fr)
}
return row, nil
}
// mutexCheck checks all available fragments for duplicate values. The return
// is map[column]map[shard][]values for collisions only.
func (v *view) mutexCheck(ctx context.Context, qcx *Qcx, details bool, limit int) (map[uint64]map[uint64][]uint64, error) {
// We don't need the context, we just want the context-awareness on the error groups.
// It would be nice if the inner functions could use this too...
eg, _ := errgroup.WithContext(ctx)
throttle := make(chan struct{}, runtime.NumCPU())
frags := v.allFragments()
results := make([]map[uint64][]uint64, len(frags))
for i, frag := range frags {
// local copies for the goroutine to use
i, frag := i, frag
eg.Go(func() error {
// limit simultaneous parallel goroutines associated with this
throttle <- struct{}{}
defer func() {
<-throttle
}()
tx, finisher, err := qcx.GetTx(Txo{Index: v.idx, Shard: frag.shard})
if err != nil {
return err
}
defer finisher(&err)
results[i], err = frag.mutexCheck(tx, details, limit)
if err != nil {
return err
}
return nil
})
}
err := eg.Wait()
if err != nil {
return nil, err
}
out := map[uint64]map[uint64][]uint64{}
// We would use MaxInt here, but it's new with go 1.17. In practice if
// you have 2 billion duplicates you're sorta screwed anyway.
if limit == 0 {
limit = math.MaxInt32
}
count := 0
for i, result := range results {
if len(result) == 0 {
continue
}
out[frags[i].shard] = result
count += len(result)
// if we have enough, stop
if count > limit {
break
}
}
return out, nil
}
// setBit sets a bit within the view.
func (v *view) setBit(txOrig Tx, rowID, columnID uint64) (changed bool, err error) {
shard := columnID / ShardWidth
var frag *fragment
frag, err = v.CreateFragmentIfNotExists(shard)
if err != nil {
return changed, err
}
tx := txOrig
if NilInside(tx) {
tx = v.idx.holder.txf.NewTx(Txo{Write: writable, Index: v.idx, Fragment: frag, Shard: shard})
defer func() {
if err == nil {
PanicOn(tx.Commit())
} else {
tx.Rollback()
}
}()
}
return frag.setBit(tx, rowID, columnID)
}
// clearBit clears a bit within the view.
func (v *view) clearBit(txOrig Tx, rowID, columnID uint64) (changed bool, err error) {
shard := columnID / ShardWidth
frag := v.Fragment(shard)
if frag == nil {
return false, nil
}
tx := txOrig
if NilInside(tx) {
tx = v.idx.holder.txf.NewTx(Txo{Write: writable, Index: v.idx, Fragment: frag, Shard: shard})
defer func() {
if err == nil {
PanicOn(tx.Commit())
} else {
tx.Rollback()
}
}()
}
return frag.clearBit(tx, rowID, columnID)
}
// value uses a column of bits to read a multi-bit value.
func (v *view) value(txOrig Tx, columnID uint64, bitDepth uint64) (value int64, exists bool, err error) {
shard := columnID / ShardWidth
frag, err := v.CreateFragmentIfNotExists(shard)
if err != nil {
return value, exists, err
}
tx := txOrig
if NilInside(tx) {
tx = frag.idx.holder.txf.NewTx(Txo{Write: !writable, Index: frag.idx, Fragment: frag, Shard: frag.shard})
defer tx.Rollback()
}
return frag.value(tx, columnID, bitDepth)
}
// setValue uses a column of bits to set a multi-bit value.
func (v *view) setValue(txOrig Tx, columnID uint64, bitDepth uint64, value int64) (changed bool, err error) {
shard := columnID / ShardWidth
frag, err := v.CreateFragmentIfNotExists(shard)
if err != nil {
return changed, err
}
tx := txOrig
if NilInside(tx) {
tx = v.idx.holder.txf.NewTx(Txo{Write: writable, Index: v.idx, Fragment: frag, Shard: shard})
defer func() {
if err == nil {
PanicOn(tx.Commit())
} else {
tx.Rollback()
}
}()
}
return frag.setValue(tx, columnID, bitDepth, value)
}
// clearValue removes a specific value assigned to columnID
func (v *view) clearValue(txOrig Tx, columnID uint64, bitDepth uint64, value int64) (changed bool, err error) {
shard := columnID / ShardWidth
frag := v.Fragment(shard)
if frag == nil {
return false, nil
}
tx := txOrig
if NilInside(tx) {
tx = v.idx.holder.txf.NewTx(Txo{Write: writable, Index: v.idx, Fragment: frag, Shard: shard})
defer func() {
if err == nil {
PanicOn(tx.Commit())
} else {
tx.Rollback()
}
}()
}
return frag.clearValue(tx, columnID, bitDepth, value)
}
// rangeOp returns rows with a field value encoding matching the predicate.
func (v *view) rangeOp(qcx *Qcx, op pql.Token, bitDepth uint64, predicate int64) (_ *Row, err0 error) {
r := NewRow()
for _, frag := range v.allFragments() {
tx, finisher, err := qcx.GetTx(Txo{Write: !writable, Index: v.idx, Shard: frag.shard})
if err != nil {
return nil, err
}
defer finisher(&err0)
other, err := frag.rangeOp(tx, op, bitDepth, predicate)
if err != nil {
return nil, err
}
r = r.Union(other)
}
return r, nil
}
func (v *view) bitDepth(shards []uint64) (uint64, error) {
var maxBitDepth uint64
for _, shard := range shards {
frag, ok := v.fragments[shard]
if !ok || frag == nil {
continue
}
bd, err := frag.bitDepth()
if err != nil {
return 0, errors.Wrapf(err, "getting fragment(%d) bit depth", shard)
}
if bd > maxBitDepth {
maxBitDepth = bd
}
}
return maxBitDepth, nil
}
// ViewInfo represents schema information for a view.
type ViewInfo struct {
Name string `json:"name"`
}
type viewInfoSlice []*ViewInfo
func (p viewInfoSlice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
func (p viewInfoSlice) Len() int { return len(p) }
func (p viewInfoSlice) Less(i, j int) bool { return p[i].Name < p[j].Name }
// FormatQualifiedViewName generates a qualified name for the view to be used with Tx operations.
func FormatQualifiedViewName(index, field, view string) string {
return fmt.Sprintf("%s\x00%s\x00%s\x00", index, field, view)
}