mirror of
https://github.com/featurebasedb/featurebase.git
synced 2026-08-28 10:54:59 +00:00
2235 lines
50 KiB
Go
2235 lines
50 KiB
Go
// Copyright 2017 Pilosa Corp.
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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package rbf
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import (
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"bufio"
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"fmt"
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"io"
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"math"
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"sort"
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"strings"
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"sync"
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"github.com/benbjohnson/immutable"
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"github.com/molecula/featurebase/v2/hash"
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"github.com/molecula/featurebase/v2/roaring"
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txkey "github.com/molecula/featurebase/v2/short_txkey"
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. "github.com/molecula/featurebase/v2/vprint"
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)
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var _ = txkey.ToString
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// Tx represents a transaction.
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type Tx struct {
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mu sync.RWMutex
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db *DB // parent db
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meta [PageSize]byte // copy of current meta page
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walID int64 // max WAL ID at start of tx
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walPageN int // wal page count
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rootRecords *immutable.SortedMap // read-only cache of root records
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// pageMap holds WAL pages that have not yet been transferred
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// into the database pages. So it can be empty, if the whole previous
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// WAL has been checkpointed back into the database.
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pageMap *PageMap // mapping of database pages to WAL IDs
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writable bool // if true, tx can write
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dirtyPages map[uint32][]byte // updated pages in this tx
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dirtyBitmapPages map[uint32][]byte // updated bitmap pages in this tx
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// If Rollback() has already completed, don't do it again.
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// Note db == nil means that commit has already been done.
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rollbackDone bool
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// DeleteEmptyContainer lets us by default match the roaring
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// behavior where an existing container has all its bits cleared
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// but still sticks around in the database.
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DeleteEmptyContainer bool
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}
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func (tx *Tx) DBPath() string {
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return tx.db.Path
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}
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// Writable returns true if the transaction can mutate data.
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func (tx *Tx) Writable() bool {
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return tx.writable
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}
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// dirty returns true if any pages have been updated in this tx.
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func (tx *Tx) dirty() bool {
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return tx.dirtyN() != 0
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}
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// dirtyN returns the number of dirty pages.
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func (tx *Tx) dirtyN() int {
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return len(tx.dirtyPages) + len(tx.dirtyBitmapPages)
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}
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// PageN returns the number of pages in the database as seen by this transaction.
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func (tx *Tx) PageN() int {
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return int(readMetaPageN(tx.meta[:]))
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}
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// Commit completes the transaction and persists data changes.
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func (tx *Tx) Commit() error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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}
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// If any pages have been written, ensure we write a new meta page with
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// the commit flag to mark the end of the transaction.
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if tx.dirty() {
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if err := tx.flush(); err != nil {
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return err
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}
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// future plan: after checkpoint is moved to background
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// or not every removeTx, then we can move the
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// tx.db.rootRecords = tx.rootRecords into removeTx().
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// avoid race detector firing on a write race here
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// vs the read of rootRecords at db.Begin()
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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tx.db.rootRecords = tx.rootRecords
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tx.db.pageMap = tx.pageMap
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tx.db.walPageN = tx.walPageN
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return tx.db.removeTx(tx)
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}
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// Disconnect transaction from DB.
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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return tx.db.removeTx(tx)
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}
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func (tx *Tx) Rollback() {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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// allow Rollback to be called more than once.
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if tx.rollbackDone {
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return
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}
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tx.rollbackDone = true
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if tx.db == nil {
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// Commit already done.
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return
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}
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// Disconnect transaction from DB.
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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PanicOn(tx.db.removeTx(tx))
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}
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// Root returns the root page number for a bitmap. Returns 0 if the bitmap does not exist.
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func (tx *Tx) Root(name string) (uint32, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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return tx.root(name)
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}
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func (tx *Tx) root(name string) (uint32, error) {
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records, err := tx.RootRecords()
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if err != nil {
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return 0, err
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}
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pgno, ok := records.Get(name)
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if !ok {
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return 0, ErrBitmapNotFound
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}
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return pgno.(uint32), nil
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}
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// BitmapNames returns a list of all bitmap names.
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func (tx *Tx) BitmapNames() ([]string, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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if tx.db == nil {
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return nil, ErrTxClosed
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return nil, err
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}
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a := make([]string, 0, records.Len())
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for itr := records.Iterator(); !itr.Done(); {
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k, _ := itr.Next()
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a = append(a, k.(string))
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}
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return a, nil
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}
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// CreateBitmap creates a new empty bitmap with the given name.
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// Returns an error if the bitmap already exists.
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func (tx *Tx) CreateBitmap(name string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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return tx.createBitmap(name)
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}
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func (tx *Tx) createBitmap(name string) error {
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if name == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if already exists.
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if _, ok := records.Get(name); ok {
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return ErrBitmapExists
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}
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// Allocate new root page.
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pgno, err := tx.allocatePgno()
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if err != nil {
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return err
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}
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// Write root page.
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page := make([]byte, PageSize)
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writePageNo(page, pgno)
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writeFlags(page, PageTypeLeaf)
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writeCellN(page, 0)
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if err := tx.writePage(page); err != nil {
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return err
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}
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// Insert into correct index.
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records = records.Set(name, pgno)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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return nil
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}
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// CreateBitmapIfNotExists creates a new empty bitmap with the given name.
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// This is a no-op if the bitmap already exists.
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func (tx *Tx) CreateBitmapIfNotExists(name string) error {
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if err := tx.CreateBitmap(name); err != nil && err != ErrBitmapExists {
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return err
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}
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return nil
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}
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func (tx *Tx) createBitmapIfNotExists(name string) error {
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if err := tx.createBitmap(name); err != nil && err != ErrBitmapExists {
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return err
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}
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return nil
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}
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// DeleteBitmap removes a bitmap with the given name.
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// Returns an error if the bitmap does not exist.
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func (tx *Tx) DeleteBitmap(name string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if name == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if it doesn't exist.
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pgno, ok := records.Get(name)
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if !ok {
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return fmt.Errorf("bitmap does not exist: %q", name)
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}
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// Deallocate all pages in the tree.
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if err := tx.deallocateTree(pgno.(uint32)); err != nil {
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return err
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}
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// Delete from record list & rewrite record pages.
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records = records.Delete(name)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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tx.rootRecords = records
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return nil
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}
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// DeleteBitmapsWithPrefix removes all bitmaps with a given prefix.
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func (tx *Tx) DeleteBitmapsWithPrefix(prefix string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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for itr := records.Iterator(); !itr.Done(); {
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name, pgno := itr.Next()
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// Skip bitmaps without matching prefix.
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if !strings.HasPrefix(name.(string), prefix) {
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continue
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}
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// Deallocate all pages in the tree.
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if err := tx.deallocateTree(pgno.(uint32)); err != nil {
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return err
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}
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records = records.Delete(name.(string))
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}
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// Rewrite record pages.
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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tx.rootRecords = records
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return nil
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}
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// RenameBitmap updates the name of an existing bitmap.
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// Returns an error if the bitmap does not exist.
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func (tx *Tx) RenameBitmap(oldname, newname string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if oldname == "" || newname == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if it doesn't exist.
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pgno, ok := records.Get(oldname)
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if !ok {
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return fmt.Errorf("bitmap does not exist: %q", oldname)
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}
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// Update record name & rewrite record pages.
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records = records.Delete(oldname)
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records = records.Set(newname, pgno)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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return nil
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}
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// RootRecords returns a list of root records.
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func (tx *Tx) RootRecords() (records *immutable.SortedMap, err error) {
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if tx.rootRecords != nil {
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return tx.rootRecords, nil
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}
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records = immutable.NewSortedMap(nil)
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for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
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page, _, err := tx.readPage(pgno)
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if err != nil {
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return nil, err
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}
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// Read all records on the page.
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a, err := readRootRecords(page)
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if err != nil {
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return nil, err
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}
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for _, rec := range a {
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records = records.Set(rec.Name, rec.Pgno)
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}
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// Read next overflow page number.
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pgno = WalkRootRecordPages(page)
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}
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// Cache result
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tx.rootRecords = records
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return records, nil
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}
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// writeRootRecordPages writes a list of root record pages.
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func (tx *Tx) writeRootRecordPages(records *immutable.SortedMap) (err error) {
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// Release all existing root record pages.
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for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
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page, _, err := tx.readPage(pgno)
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if err != nil {
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return err
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}
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err = tx.freePgno(pgno)
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if err != nil {
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return err
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}
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pgno = WalkRootRecordPages(page)
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}
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// Exit early if no records exist.
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if records.Len() == 0 {
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writeMetaRootRecordPageNo(tx.meta[:], 0)
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return nil
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}
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// Allocate initial root record page.
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pgno, err := tx.allocatePgno()
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if err != nil {
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return err
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}
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writeMetaRootRecordPageNo(tx.meta[:], pgno)
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// Write new root record pages.
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for itr := records.Iterator(); !itr.Done(); {
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// Initialize page & write as many records as will fit.
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page := make([]byte, PageSize)
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writePageNo(page, pgno)
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writeFlags(page, PageTypeRootRecord)
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if err := writeRootRecords(page, itr); err == io.ErrShortBuffer {
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// Allocate next pgno and write overflow if we have remaining records.
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if pgno, err = tx.allocatePgno(); err != nil {
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return err
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}
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writeRootRecordOverflowPgno(page, pgno)
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} else if err != nil {
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return err
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}
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// Write page to disk.
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if err := tx.writePage(page); err != nil {
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return err
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}
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}
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// Update cache records.
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tx.rootRecords = records
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return nil
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}
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// Add sets a given bit on the bitmap.
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func (tx *Tx) Add(name string, a ...uint64) (changeCount int, err error) {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return 0, ErrTxClosed
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} else if !tx.writable {
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return 0, ErrTxNotWritable
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} else if name == "" {
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return 0, ErrBitmapNameRequired
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}
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if err := tx.createBitmapIfNotExists(name); err != nil {
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return 0, err
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}
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c, err := tx.cursor(name)
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if err != nil {
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return 0, err
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}
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defer c.Close()
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for _, v := range a {
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if vchanged, err := c.Add(v); err != nil {
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return changeCount, err
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} else if vchanged {
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changeCount++
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}
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}
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return changeCount, nil
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}
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// Remove unsets a given bit on the bitmap.
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func (tx *Tx) Remove(name string, a ...uint64) (changeCount int, err error) {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return 0, ErrTxClosed
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} else if !tx.writable {
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return 0, ErrTxNotWritable
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} else if name == "" {
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return 0, ErrBitmapNameRequired
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}
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c, err := tx.cursor(name)
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if err == ErrBitmapNotFound {
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return 0, nil
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} else if err != nil {
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return 0, err
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}
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defer c.Close()
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for _, v := range a {
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if vchanged, err := c.Remove(v); err != nil {
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return changeCount, err
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} else if vchanged {
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changeCount++
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}
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}
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return changeCount, nil
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}
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|
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// Contains returns true if the given bit is set on the bitmap.
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func (tx *Tx) Contains(name string, v uint64) (bool, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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if tx.db == nil {
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return false, ErrTxClosed
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} else if name == "" {
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return false, ErrBitmapNameRequired
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}
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c, err := tx.cursor(name)
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if err == ErrBitmapNotFound {
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return false, nil
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} else if err != nil {
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return false, err
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}
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defer c.Close()
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return c.Contains(v)
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}
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// Cursor returns an instance of a cursor this bitmap.
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func (tx *Tx) Cursor(name string) (*Cursor, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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return tx.cursor(name)
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}
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func (tx *Tx) cursor(name string) (*Cursor, error) {
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if tx.db == nil {
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return nil, ErrTxClosed
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} else if name == "" {
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return nil, ErrBitmapNameRequired
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}
|
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|
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root, err := tx.root(name)
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if err != nil {
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return nil, err
|
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}
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|
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c := tx.db.getCursor(tx)
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c.stack.top = 0
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c.stack.elems[0] = stackElem{pgno: root}
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return c, nil
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}
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|
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// RoaringBitmap returns a bitmap as a Roaring bitmap.
|
|
func (tx *Tx) RoaringBitmap(name string) (*roaring.Bitmap, error) {
|
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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|
|
if tx.db == nil {
|
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return nil, ErrTxClosed
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|
} else if name == "" {
|
|
return nil, ErrBitmapNameRequired
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return roaring.NewSliceBitmap(), nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
other := roaring.NewSliceBitmap()
|
|
if err := c.First(); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
other.Containers.Put(cell.Key, toContainer(cell, tx))
|
|
}
|
|
}
|
|
|
|
// Container returns a Roaring container by key.
|
|
func (tx *Tx) Container(name string, key uint64) (*roaring.Container, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
return tx.container(name, key)
|
|
}
|
|
|
|
func (tx *Tx) container(name string, key uint64) (*roaring.Container, error) {
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
} else if name == "" {
|
|
return nil, ErrBitmapNameRequired
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if exact, err := c.Seek(key); err != nil || !exact {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return toContainer(cell, tx), nil
|
|
}
|
|
|
|
// PutContainer inserts a container into a bitmap. Overwrites if key already exists.
|
|
func (tx *Tx) PutContainer(name string, key uint64, ct *roaring.Container) error {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
return tx.putContainer(name, key, ct)
|
|
}
|
|
|
|
func (tx *Tx) putContainer(name string, key uint64, ct *roaring.Container) error {
|
|
if tx.DeleteEmptyContainer && ct.N() == 0 {
|
|
return tx.removeContainer(name, key)
|
|
}
|
|
|
|
cell := ConvertToLeafArgs(key, ct)
|
|
|
|
if err := tx.createBitmapIfNotExists(name); err != nil {
|
|
return err
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if _, err := c.Seek(cell.Key); err != nil {
|
|
return err
|
|
}
|
|
|
|
return c.putLeafCell(cell)
|
|
}
|
|
|
|
func (tx *Tx) putContainerWithCursor(cur *Cursor, key uint64, ct *roaring.Container) error {
|
|
if tx.DeleteEmptyContainer && ct.N() == 0 {
|
|
if exact, err := cur.Seek(key); err != nil || !exact {
|
|
return err
|
|
}
|
|
return cur.deleteLeafCell(key)
|
|
}
|
|
return cur.putLeafCell(ConvertToLeafArgs(key, ct))
|
|
}
|
|
|
|
// RemoveContainer removes a container from the bitmap by key.
|
|
func (tx *Tx) RemoveContainer(name string, key uint64) error {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
return tx.removeContainer(name, key)
|
|
}
|
|
|
|
func (tx *Tx) removeContainer(name string, key uint64) error {
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if exact, err := c.Seek(key); err != nil || !exact {
|
|
return err
|
|
}
|
|
|
|
return c.deleteLeafCell(key)
|
|
}
|
|
|
|
// Check verifies the integrity of the database.
|
|
func (tx *Tx) Check() error {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if tx.db == nil {
|
|
return ErrTxClosed
|
|
}
|
|
|
|
if err := tx.checkPageAllocations(); err != nil {
|
|
return fmt.Errorf("page allocations: %w", err)
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// checkPageAllocations ensures that all pages are either in-use or on the freelist.
|
|
func (tx *Tx) checkPageAllocations() error {
|
|
freePageSet, err := tx.freePageSet()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
inusePageSet, err := tx.inusePageSet()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
// Iterate over all pages and ensure they are either in-use or free.
|
|
// They should not be BOTH in-use or free or NEITHER in-use or free.
|
|
pageN := readMetaPageN(tx.meta[:])
|
|
for pgno := uint32(1); pgno < pageN; pgno++ {
|
|
_, isInuse := inusePageSet[pgno]
|
|
_, isFree := freePageSet[pgno]
|
|
|
|
if isInuse && isFree {
|
|
return fmt.Errorf("page in-use & free: pgno=%d", pgno)
|
|
} else if !isInuse && !isFree {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
flags := readFlags(page)
|
|
if flags == PageTypeBranch || flags == PageTypeLeaf {
|
|
return fmt.Errorf("page not in-use & not free: pgno=%d", pgno)
|
|
}
|
|
//assuming its a bitmap so its ok TODO ben?
|
|
return nil
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// freePageSet returns the set of pages in the freelist.
|
|
func (tx *Tx) freePageSet() (map[uint32]struct{}, error) {
|
|
m := make(map[uint32]struct{})
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if err := c.First(); err == io.EOF {
|
|
return m, nil
|
|
} else if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return m, nil
|
|
} else if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
for _, v := range cell.Values(tx) {
|
|
pgno := uint32((cell.Key << 16) | uint64(v))
|
|
m[pgno] = struct{}{}
|
|
}
|
|
}
|
|
}
|
|
|
|
// inusePageSet returns the set of pages in use by the root records or b-trees.
|
|
func (tx *Tx) inusePageSet() (map[uint32]struct{}, error) {
|
|
m := make(map[uint32]struct{})
|
|
m[0] = struct{}{} // meta page
|
|
|
|
// Traverse root record linked list and mark each page as in-use.
|
|
for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
|
|
m[pgno] = struct{}{}
|
|
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
pgno = WalkRootRecordPages(page)
|
|
}
|
|
|
|
// Traverse freelist and mark pages as in-use.
|
|
if err := tx.walkTree(readMetaFreelistPageNo(tx.meta[:]), 0, func(pgno, parent, typ uint32) error {
|
|
m[pgno] = struct{}{}
|
|
return nil
|
|
}); err != nil {
|
|
return m, err
|
|
}
|
|
|
|
// Traverse every b-tree and mark pages as in-use.
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
_, pgno := itr.Next()
|
|
|
|
if err := tx.walkTree(pgno.(uint32), 0, func(pgno, parent, typ uint32) error {
|
|
m[pgno] = struct{}{}
|
|
return nil
|
|
}); err != nil {
|
|
return m, err
|
|
}
|
|
}
|
|
|
|
return m, nil
|
|
}
|
|
|
|
// GetSizeBytesWithPrefix returns the size of bitmaps with a given key prefix.
|
|
func (tx *Tx) GetSizeBytesWithPrefix(prefix string) (n uint64, err error) {
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
// Loop over each bitmap in the database.
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
name, pgno := itr.Next()
|
|
|
|
// Skip over any bitmaps that don't have a matching prefix.
|
|
if !strings.HasPrefix(name.(string), prefix) {
|
|
continue
|
|
}
|
|
|
|
// Traverse the bitmap's b-tree and count the bytes for each page.
|
|
if err := tx.walkTree(pgno.(uint32), 0, func(pgno, parent, typ uint32) error {
|
|
n += PageSize
|
|
return nil
|
|
}); err != nil {
|
|
return 0, err
|
|
}
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
// walkTree recursively iterates over a page and all its children.
|
|
func (tx *Tx) walkTree(pgno, parent uint32, fn func(pgno, parent, typ uint32) error) error {
|
|
// Read page and iterate over children.
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
// Execute callback.
|
|
typ := readFlags(page)
|
|
if err := fn(pgno, parent, typ); err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ {
|
|
case PageTypeBranch:
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
cell := readBranchCell(page, i)
|
|
if err := tx.walkTree(cell.ChildPgno, pgno, fn); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
return nil
|
|
case PageTypeLeaf:
|
|
// Execute callback only for bitmap pages pointed to by this leaf.
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
if cell := readLeafCell(page, i); cell.Type == ContainerTypeBitmapPtr {
|
|
if err := fn(toPgno(cell.Data), pgno, PageTypeBitmap); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
return nil
|
|
default:
|
|
return fmt.Errorf("rbf.Tx.forEachTreePage(): invalid page type: pgno=%d type=%d", pgno, typ)
|
|
}
|
|
}
|
|
|
|
// allocatePgno returns a page number for a new available page. This page may be
|
|
// pulled from the free list or, if no free pages are available, it will be
|
|
// created by extending the file size.
|
|
func (tx *Tx) allocatePgno() (uint32, error) {
|
|
// Attempt to find page in freelist.
|
|
pgno, err := tx.nextFreelistPageNo()
|
|
|
|
if err != nil {
|
|
return 0, err
|
|
} else if pgno != 0 {
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if changed, err := c.Remove(uint64(pgno)); err != nil {
|
|
return 0, err
|
|
} else if !changed {
|
|
PanicOn(fmt.Sprintf("tx.Tx.allocatePgno(): double alloc: %d", pgno))
|
|
}
|
|
return pgno, nil
|
|
}
|
|
|
|
// Increment the total page count by one and return the last page.
|
|
pgno = readMetaPageN(tx.meta[:])
|
|
writeMetaPageN(tx.meta[:], pgno+1)
|
|
return pgno, nil
|
|
}
|
|
|
|
func (tx *Tx) nextFreelistPageNo() (uint32, error) {
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
v := cell.firstValue(tx)
|
|
|
|
pgno := uint32((cell.Key << 16) | uint64(v))
|
|
return pgno, nil
|
|
}
|
|
|
|
// deallocate releases a page number to the freelist.
|
|
func (tx *Tx) freePgno(pgno uint32) error {
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
|
|
if changed, err := c.Add(uint64(pgno)); err != nil {
|
|
return err
|
|
} else if !changed {
|
|
PanicOn(fmt.Sprintf("rbf.Tx.freePgno(): double free: %d", pgno))
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// deallocateTree recursively all pages in a btree.
|
|
func (tx *Tx) deallocateTree(pgno uint32) error {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ := readFlags(page); typ {
|
|
case PageTypeBranch:
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
cell := readBranchCell(page, i)
|
|
if err := tx.deallocateTree(cell.ChildPgno); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
return nil
|
|
|
|
case PageTypeLeaf:
|
|
return tx.freePgno(pgno)
|
|
default:
|
|
return fmt.Errorf("rbf.Tx.deallocateTree(): invalid page type: pgno=%d type=%d", pgno, typ)
|
|
}
|
|
}
|
|
|
|
func (tx *Tx) readPage(pgno uint32) (_ []byte, isHeap bool, err error) {
|
|
// Meta page is always cached on the transaction.
|
|
//fmt.Printf("readPage %d\n", pgno)
|
|
if pgno == 0 {
|
|
return tx.meta[:], false, nil
|
|
}
|
|
|
|
// Verify page number requested is within current size of database.
|
|
pageN := readMetaPageN(tx.meta[:])
|
|
if pgno > pageN {
|
|
return nil, false, fmt.Errorf("rbf: page read out of bounds: pgno=%d max=%d", pgno, pageN-1)
|
|
}
|
|
|
|
// Check if page has been updated in this tx.
|
|
if tx.writable {
|
|
if page := tx.dirtyPages[pgno]; page != nil {
|
|
return page, true, nil
|
|
} else if page := tx.dirtyBitmapPages[pgno]; page != nil {
|
|
return page, true, nil
|
|
}
|
|
}
|
|
|
|
// Check if page is remapped in WAL.
|
|
if walID, ok := tx.pageMap.Get(pgno); ok {
|
|
buf, err := tx.db.readWALPageByID(walID)
|
|
return buf, false, err
|
|
}
|
|
|
|
// Otherwise read directly from DB.
|
|
buf, err := tx.db.readDBPage(pgno)
|
|
return buf, false, err
|
|
}
|
|
|
|
func (tx *Tx) writePage(page []byte) error {
|
|
tx.dirtyPages[readPageNo(page)] = page
|
|
return tx.checkTxSize()
|
|
}
|
|
|
|
func (tx *Tx) writeBitmapPage(pgno uint32, page []byte) error {
|
|
tx.dirtyBitmapPages[pgno] = page
|
|
return tx.checkTxSize()
|
|
}
|
|
|
|
func (tx *Tx) checkTxSize() error {
|
|
if (tx.walPageN+tx.dirtyN())*PageSize >= len(tx.db.wal) {
|
|
return ErrTxTooLarge
|
|
}
|
|
return nil
|
|
}
|
|
|
|
func (tx *Tx) AddRoaring(name string, bm *roaring.Bitmap) (changed bool, err error) {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
|
|
if err := tx.createBitmapIfNotExists(name); err != nil {
|
|
return false, err
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err != nil {
|
|
return false, err
|
|
}
|
|
defer c.Close()
|
|
|
|
return c.AddRoaring(bm)
|
|
}
|
|
|
|
func (tx *Tx) leafCellBitmap(pgno uint32) (uint32, []uint64, error) {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return 0, nil, err
|
|
}
|
|
return pgno, toArray64(page), err
|
|
}
|
|
|
|
func (tx *Tx) ContainerIterator(name string, key uint64) (citer roaring.ContainerIterator, found bool, err error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return &emptyContainerIterator{}, false, nil // nothing available.
|
|
} else if err != nil {
|
|
return nil, false, err
|
|
}
|
|
|
|
exact, err := c.Seek(key)
|
|
if err != nil {
|
|
return nil, false, err
|
|
}
|
|
return &containerIterator{cursor: c}, exact, nil
|
|
}
|
|
|
|
func (tx *Tx) ApplyFilter(name string, key uint64, filter roaring.BitmapFilter) (err error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil // nothing available.
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
|
|
_, err = c.Seek(key)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
f := containerFilter{cursor: c, filter: filter, tx: tx}
|
|
defer f.Close()
|
|
return f.Apply()
|
|
}
|
|
|
|
func (tx *Tx) ForEach(name string, fn func(i uint64) error) error {
|
|
return tx.ForEachRange(name, 0, math.MaxUint64, fn)
|
|
}
|
|
|
|
func (tx *Tx) ForEachRange(name string, start, end uint64, fn func(uint64) error) error {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if _, err := c.Seek(highbits(start)); err != nil {
|
|
return err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
switch cell.Type {
|
|
case ContainerTypeArray:
|
|
for _, lo := range toArray16(cell.Data) {
|
|
v := cell.Key<<16 | uint64(lo)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
case ContainerTypeRLE:
|
|
for _, r := range toInterval16(cell.Data) {
|
|
for lo := int(r.Start); lo <= int(r.Last); lo++ {
|
|
v := cell.Key<<16 | uint64(lo)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
case ContainerTypeBitmap:
|
|
for i, bits := range toArray64(cell.Data) {
|
|
for j := uint(0); j < 64; j++ {
|
|
if bits&(1<<j) == 0 {
|
|
continue
|
|
}
|
|
|
|
v := cell.Key<<16 | (uint64(i) * 64) | uint64(j)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
case ContainerTypeBitmapPtr:
|
|
_, bm, err := c.tx.leafCellBitmap(toPgno(cell.Data))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
for i, bits := range bm {
|
|
for j := uint(0); j < 64; j++ {
|
|
if bits&(1<<j) == 0 {
|
|
continue
|
|
}
|
|
|
|
v := cell.Key<<16 | (uint64(i) * 64) | uint64(j)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
default:
|
|
PanicOn(fmt.Sprintf("invalid container type: %d", cell.Type))
|
|
}
|
|
}
|
|
}
|
|
|
|
func (tx *Tx) Count(name string) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
var n uint64
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
n += uint64(cell.BitN)
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
func (tx *Tx) Max(name string) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.Last(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return uint64((cell.Key << 16) | uint64(cell.lastValue(tx))), nil
|
|
}
|
|
|
|
func (tx *Tx) Min(name string) (uint64, bool, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, false, nil
|
|
} else if err != nil {
|
|
return 0, false, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, false, nil
|
|
} else if err != nil {
|
|
return 0, false, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, false, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return uint64((cell.Key << 16) | uint64(cell.firstValue(tx))), true, nil
|
|
}
|
|
|
|
func (tx *Tx) UnionInPlace(name string, others ...*roaring.Bitmap) error {
|
|
rbm, err := tx.RoaringBitmap(name)
|
|
PanicOn(err)
|
|
|
|
rbm.UnionInPlace(others...)
|
|
// iterate over the containers that changed within rbm, and write them back to disk.
|
|
|
|
it, found := rbm.Containers.Iterator(0)
|
|
_ = found // don't care about the value of found, because first containerKey might be > 0
|
|
|
|
for it.Next() {
|
|
containerKey, rc := it.Value()
|
|
|
|
// TODO: only write the changed ones back, as optimization?
|
|
// Compare to ImportRoaringBits.
|
|
err := tx.PutContainer(name, containerKey, rc)
|
|
PanicOn(err)
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// roaring.countRange counts the number of bits set between [start, end).
|
|
func (tx *Tx) CountRange(name string, start, end uint64) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if start >= end {
|
|
return 0, nil
|
|
}
|
|
|
|
skey := highbits(start)
|
|
ekey := highbits(end)
|
|
ebits := int32(lowbits(end))
|
|
|
|
csr, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer csr.Close()
|
|
|
|
exact, err := csr.Seek(skey)
|
|
_ = exact
|
|
if err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
var n uint64
|
|
for {
|
|
if err := csr.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &csr.stack.elems[csr.stack.top]
|
|
leafPage, _, err := csr.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
c := readLeafCell(leafPage, elem.index)
|
|
|
|
k := c.Key
|
|
if k > ekey {
|
|
break
|
|
}
|
|
|
|
// If range is entirely in one container then just count that range.
|
|
if skey == ekey {
|
|
return uint64(c.countRange(tx, int32(lowbits(start)), ebits)), nil
|
|
}
|
|
// INVAR: skey < ekey
|
|
|
|
// k > ekey handles the case when start > end and where start and end
|
|
// are in different containers. Same container case is already handled above.
|
|
if k > ekey {
|
|
break
|
|
}
|
|
if k == skey {
|
|
n += uint64(c.countRange(tx, int32(lowbits(start)), roaring.MaxContainerVal+1))
|
|
continue
|
|
}
|
|
if k < ekey {
|
|
n += uint64(c.BitN)
|
|
continue
|
|
}
|
|
if k == ekey && ebits > 0 {
|
|
n += uint64(c.countRange(tx, 0, ebits))
|
|
break
|
|
}
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
func (tx *Tx) OffsetRange(name string, offset, start, endx uint64) (*roaring.Bitmap, error) {
|
|
if lowbits(offset) != 0 {
|
|
PanicOn("offset must not contain low bits")
|
|
} else if lowbits(start) != 0 {
|
|
PanicOn("range start must not contain low bits")
|
|
} else if lowbits(endx) != 0 {
|
|
PanicOn("range endx must not contain low bits")
|
|
}
|
|
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return roaring.NewSliceBitmap(), nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
other := roaring.NewSliceBitmap()
|
|
off := highbits(offset)
|
|
hi0, hi1 := highbits(start), highbits(endx)
|
|
|
|
if _, err := c.Seek(hi0); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
ckey := cell.Key
|
|
|
|
// >= hi1 is correct b/c endx cannot have any lowbits set.
|
|
if ckey >= hi1 {
|
|
break
|
|
}
|
|
other.Containers.Put(off+(ckey-hi0), toContainer(cell, tx))
|
|
}
|
|
return other, nil
|
|
}
|
|
|
|
// containerFilter is like ContainerIterator, but implements ApplyFilter
|
|
type containerFilter struct {
|
|
cursor *Cursor
|
|
filter roaring.BitmapFilter
|
|
tx *Tx
|
|
header roaring.Container
|
|
body [8192]byte
|
|
}
|
|
|
|
func (s *containerFilter) Close() {
|
|
s.cursor.Close()
|
|
}
|
|
|
|
func (s *containerFilter) Apply() (err error) {
|
|
var minKey roaring.FilterKey
|
|
var cell leafCell
|
|
for err := s.cursor.Next(); err == nil; err = s.cursor.Next() {
|
|
elem := &s.cursor.stack.elems[s.cursor.stack.top]
|
|
leafPage, _, _ := s.cursor.tx.readPage(elem.pgno)
|
|
readLeafCellInto(&cell, leafPage, elem.index)
|
|
key := roaring.FilterKey(cell.Key)
|
|
if key < minKey {
|
|
continue
|
|
}
|
|
s.tx.mu.RUnlock()
|
|
res := s.filter.ConsiderKey(key, int32(cell.BitN))
|
|
s.tx.mu.RLock()
|
|
if res.Err != nil {
|
|
return res.Err
|
|
}
|
|
if res.YesKey <= key && res.NoKey <= key {
|
|
data := intoContainer(cell, s.cursor.tx, &s.header, s.body[:])
|
|
s.tx.mu.RUnlock()
|
|
res = s.filter.ConsiderData(key, data)
|
|
s.tx.mu.RLock()
|
|
if res.Err != nil {
|
|
return res.Err
|
|
}
|
|
}
|
|
minKey = res.NoKey
|
|
if minKey > key+1 {
|
|
_, err := s.cursor.Seek(uint64(minKey))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// containerIterator wraps Cursor to implement roaring.ContainerIterator.
|
|
type containerIterator struct {
|
|
cursor *Cursor
|
|
}
|
|
|
|
// Close must be called when the client is done
|
|
// with the containerIterator so that the internal
|
|
// Cursor can be recycled.
|
|
func (itr *containerIterator) Close() {
|
|
itr.cursor.Close()
|
|
}
|
|
|
|
// Next moves the iterator to the next container.
|
|
func (itr *containerIterator) Next() bool {
|
|
err := itr.cursor.Next()
|
|
return err == nil
|
|
}
|
|
|
|
// Value returns the current key & container.
|
|
func (itr *containerIterator) Value() (uint64, *roaring.Container) {
|
|
elem := &itr.cursor.stack.elems[itr.cursor.stack.top]
|
|
leafPage, _, _ := itr.cursor.tx.readPage(elem.pgno)
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
return cell.Key, toContainer(cell, itr.cursor.tx)
|
|
}
|
|
|
|
// always returns false for Next()
|
|
type emptyContainerIterator struct{}
|
|
|
|
func (si *emptyContainerIterator) Close() {}
|
|
|
|
func (si *emptyContainerIterator) Next() bool {
|
|
return false
|
|
}
|
|
func (si *emptyContainerIterator) Value() (uint64, *roaring.Container) {
|
|
PanicOn("emptyContainerIterator never has any Values")
|
|
return 0, nil
|
|
}
|
|
|
|
func (tx *Tx) Dump(short bool, shard uint64) {
|
|
fmt.Println(tx.DumpString(short, shard))
|
|
}
|
|
func (tx *Tx) DumpString(short bool, shard uint64) (r string) {
|
|
|
|
r = "allkeys:[\n"
|
|
|
|
// grab root records, for a list of bitmaps.
|
|
records, err := tx.RootRecords()
|
|
PanicOn(err)
|
|
n := 0
|
|
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
name, _ := itr.Next()
|
|
|
|
c, err := tx.cursor(name.(string))
|
|
PanicOn(err)
|
|
defer c.Close()
|
|
|
|
err = c.First() // First will rewind to beginning.
|
|
if err == io.EOF {
|
|
r += "<empty bitmap>"
|
|
n++
|
|
continue
|
|
}
|
|
PanicOn(err)
|
|
for {
|
|
err := c.Next()
|
|
if err == io.EOF {
|
|
break
|
|
}
|
|
PanicOn(err)
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
PanicOn(err)
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
ckey := cell.Key
|
|
ct := toContainer(cell, tx)
|
|
|
|
s := stringOfCkeyCt(ckey, ct, name.(string), short, true)
|
|
r += s
|
|
n++
|
|
}
|
|
}
|
|
if n == 0 {
|
|
return ""
|
|
}
|
|
// note that we can have a bitmap present, but it can be empty
|
|
r += "]\n all-in-blake3:" + hash.Blake3sum16([]byte(r)) + "\n"
|
|
|
|
return "rbf-" + r
|
|
}
|
|
|
|
func containerToBytes(ct *roaring.Container) []byte {
|
|
|
|
ty := roaring.ContainerType(ct)
|
|
switch ty {
|
|
case roaring.ContainerNil:
|
|
PanicOn("nil container")
|
|
case roaring.ContainerArray:
|
|
return fromArray16(roaring.AsArray(ct))
|
|
case roaring.ContainerBitmap:
|
|
return fromArray64(roaring.AsBitmap(ct))
|
|
case roaring.ContainerRun:
|
|
return fromInterval16(roaring.AsRuns(ct))
|
|
}
|
|
PanicOn(fmt.Sprintf("unknown container type '%v'", int(ty)))
|
|
return nil
|
|
}
|
|
|
|
func bitmapAsString(rbm *roaring.Bitmap) (r string) {
|
|
r = "c("
|
|
slc := rbm.Slice()
|
|
width := 0
|
|
s := ""
|
|
for _, v := range slc {
|
|
if width == 0 {
|
|
s = fmt.Sprintf("%v", v)
|
|
} else {
|
|
s = fmt.Sprintf(", %v", v)
|
|
}
|
|
width += len(s)
|
|
r += s
|
|
if width > 70 {
|
|
r += ",\n"
|
|
width = 0
|
|
}
|
|
}
|
|
if width == 0 && len(r) > 2 {
|
|
r = r[:len(r)-2]
|
|
}
|
|
return r + ")"
|
|
}
|
|
|
|
func stringOfCkeyCt(ckey uint64, ct *roaring.Container, rrName string, short, showHash bool) (s string) {
|
|
|
|
hsh := ""
|
|
if showHash {
|
|
by := containerToBytes(ct)
|
|
hsh = hash.Blake3sum16(by)
|
|
}
|
|
|
|
cts := roaring.NewSliceContainers()
|
|
cts.Put(ckey, ct)
|
|
rbm := &roaring.Bitmap{Containers: cts}
|
|
srbm := bitmapAsString(rbm)
|
|
|
|
var pre string
|
|
if len(rrName) > 0 {
|
|
pre = txkey.PrefixToString([]byte(rrName))
|
|
}
|
|
bkey := pre + fmt.Sprintf("ckey@%020d", ckey)
|
|
|
|
s = fmt.Sprintf("%v -> %v (%v hot)\n", bkey, hsh, ct.N())
|
|
|
|
if !short {
|
|
s += " ......." + srbm + "\n"
|
|
}
|
|
return
|
|
}
|
|
|
|
func (tx *Tx) ImportRoaringBits(name string, itr roaring.RoaringIterator, clear bool, log bool, rowSize uint64, data []byte) (changed int, rowSet map[uint64]int, err error) {
|
|
|
|
// begin write boilerplate
|
|
if tx.db == nil {
|
|
err = ErrTxClosed
|
|
return
|
|
} else if !tx.writable {
|
|
err = ErrTxNotWritable
|
|
return
|
|
} else if name == "" {
|
|
err = ErrBitmapNameRequired
|
|
return
|
|
}
|
|
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
|
|
if err = tx.createBitmapIfNotExists(name); err != nil {
|
|
return
|
|
}
|
|
// end write boilerplate
|
|
|
|
n := itr.Len()
|
|
if n == 0 {
|
|
return
|
|
}
|
|
rowSet = make(map[uint64]int)
|
|
|
|
var currRow uint64
|
|
|
|
cur, err := tx.cursor(name)
|
|
if err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
defer cur.Close()
|
|
|
|
for itrKey, synthC := itr.NextContainer(); synthC != nil; itrKey, synthC = itr.NextContainer() {
|
|
|
|
if rowSize != 0 {
|
|
currRow = itrKey / rowSize
|
|
}
|
|
nsynth := int(synthC.N())
|
|
if nsynth == 0 {
|
|
continue
|
|
}
|
|
// INVAR: nsynth > 0
|
|
|
|
// Find existing container, if any.
|
|
var oldC *roaring.Container
|
|
if exact, err := cur.Seek(itrKey); err != nil {
|
|
return changed, rowSet, err
|
|
} else if exact {
|
|
elem := &cur.stack.elems[cur.stack.top]
|
|
leafPage, _, err := cur.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
oldC = toContainer(cell, tx)
|
|
}
|
|
|
|
if oldC == nil || oldC.N() == 0 {
|
|
// no container at the itrKey in badger (or all zero container).
|
|
if clear {
|
|
// changed of 0 and empty rowSet is perfect, no need to change the defaults.
|
|
continue
|
|
} else {
|
|
changed += nsynth
|
|
rowSet[currRow] += nsynth
|
|
|
|
if err := tx.putContainerWithCursor(cur, itrKey, synthC); err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
continue
|
|
}
|
|
}
|
|
|
|
if clear {
|
|
|
|
existN := oldC.N() // number of bits set in the old container
|
|
newC := oldC.Difference(synthC)
|
|
|
|
// update rowSet and changes
|
|
if newC.N() == existN {
|
|
// INVAR: do changed need adjusting? nope. same bit count,
|
|
// so no change could have happened.
|
|
continue
|
|
} else {
|
|
changes := int(existN - newC.N())
|
|
changed += changes
|
|
rowSet[currRow] -= changes
|
|
err = tx.putContainerWithCursor(cur, itrKey, newC)
|
|
if err != nil {
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
} else {
|
|
// setting bits
|
|
|
|
existN := oldC.N()
|
|
if existN == roaring.MaxContainerVal+1 {
|
|
// completely full container already, set will do nothing. so changed of 0 default is perfect.
|
|
continue
|
|
}
|
|
if existN == 0 {
|
|
// can nsynth be zero? No, because of the continue/invariant above where nsynth > 0
|
|
changed += nsynth
|
|
rowSet[currRow] += nsynth
|
|
err = tx.putContainerWithCursor(cur, itrKey, synthC)
|
|
if err != nil {
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
|
|
newC := roaring.Union(oldC, synthC) // UnionInPlace was giving us crashes on overly large containers.
|
|
|
|
if roaring.ContainerType(newC) == roaring.ContainerBitmap {
|
|
newC.Repair() // update the bit-count so .n is valid. b/c UnionInPlace doesn't update it.
|
|
}
|
|
if newC.N() != existN {
|
|
changes := int(newC.N() - existN)
|
|
changed += changes
|
|
rowSet[currRow] += changes
|
|
|
|
err = tx.putContainerWithCursor(cur, itrKey, newC)
|
|
if err != nil {
|
|
PanicOn(err)
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
}
|
|
}
|
|
return
|
|
}
|
|
|
|
// flush writes the dirty pages & meta page to the WAL.
|
|
func (tx *Tx) flush() error {
|
|
w := bufio.NewWriterSize(tx.db.walFile, 65536)
|
|
|
|
// Write non-bitmap pages to WAL.
|
|
for _, pgno := range dirtyPageMapKeys(tx.dirtyPages) {
|
|
walID, err := tx.writeToWAL(w, tx.dirtyPages[pgno])
|
|
if err != nil {
|
|
return fmt.Errorf("write page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(pgno, walID)
|
|
}
|
|
|
|
// Write bitmap headers & pages to WAL.
|
|
for _, pgno := range dirtyPageMapKeys(tx.dirtyBitmapPages) {
|
|
// Write header page.
|
|
hdr := make([]byte, PageSize)
|
|
writePageNo(hdr[:], pgno)
|
|
writeFlags(hdr[:], PageTypeBitmapHeader)
|
|
if _, err := tx.writeToWAL(w, hdr); err != nil {
|
|
return fmt.Errorf("write bitmap header page to wal: %w", err)
|
|
}
|
|
|
|
// Write bitmap page.
|
|
walID, err := tx.writeToWAL(w, tx.dirtyBitmapPages[pgno])
|
|
if err != nil {
|
|
return fmt.Errorf("write bitmap page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(pgno, walID)
|
|
}
|
|
|
|
// Write meta page to WAL.
|
|
walID, err := tx.writeToWAL(w, tx.meta[:])
|
|
if err != nil {
|
|
return fmt.Errorf("write meta page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(uint32(0), walID)
|
|
|
|
// Flush & sync WAL.
|
|
if err := w.Flush(); err != nil {
|
|
return fmt.Errorf("flush wal: %w", err)
|
|
} else if err := tx.db.fsync(tx.db.walFile); err != nil {
|
|
return fmt.Errorf("sync wal: %w", err)
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
func (tx *Tx) writeToWAL(w io.Writer, page []byte) (walID int64, err error) {
|
|
// Determine next WAL ID from cached meta page.
|
|
walID = readMetaWALID(tx.meta[:]) + 1
|
|
|
|
// Update WAL ID on cached meta page.
|
|
writeMetaWALID(tx.meta[:], walID)
|
|
|
|
// Append to WAL and increment WAL size.
|
|
if _, err := w.Write(page); err != nil {
|
|
return 0, err
|
|
}
|
|
tx.walPageN++
|
|
|
|
return walID, nil
|
|
}
|
|
|
|
// Pages returns meta & record data for a list of pages.
|
|
func (tx *Tx) Pages(pgnos []uint32) ([]Page, error) {
|
|
// Read page info for all pages in the database.
|
|
infos, err := tx.PageInfos()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
// Loop over each requested page number and extract additional data.
|
|
var pages []Page
|
|
for _, pgno := range pgnos {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
switch info := infos[pgno].(type) {
|
|
case *MetaPageInfo:
|
|
pages = append(pages, &MetaPage{MetaPageInfo: info})
|
|
|
|
case *RootRecordPageInfo:
|
|
records, err := readRootRecords(buf)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
pages = append(pages, &RootRecordPage{RootRecordPageInfo: info, Records: records})
|
|
|
|
case *LeafPageInfo:
|
|
page := &LeafPage{LeafPageInfo: info}
|
|
cells := make([]leafCell, page.CellN)
|
|
for _, cell := range readLeafCells(buf, cells) {
|
|
other := &LeafCell{
|
|
Key: cell.Key,
|
|
Type: cell.Type,
|
|
}
|
|
|
|
switch cell.Type {
|
|
case ContainerTypeArray, ContainerTypeRLE:
|
|
other.Values = cell.Values(tx)
|
|
case ContainerTypeBitmapPtr:
|
|
other.Pgno = toPgno(cell.Data)
|
|
}
|
|
|
|
page.Cells = append(page.Cells, other)
|
|
}
|
|
pages = append(pages, page)
|
|
|
|
case *BranchPageInfo:
|
|
page := &BranchPage{BranchPageInfo: info}
|
|
for _, cell := range readBranchCells(buf) {
|
|
page.Cells = append(page.Cells, &BranchCell{
|
|
Key: cell.LeftKey,
|
|
Flags: cell.Flags,
|
|
Pgno: cell.ChildPgno,
|
|
})
|
|
}
|
|
pages = append(pages, page)
|
|
|
|
case *BitmapPageInfo:
|
|
pages = append(pages, &BitmapPage{
|
|
BitmapPageInfo: info,
|
|
Values: bitmapValues(toArray64(buf)),
|
|
})
|
|
|
|
case *FreePageInfo:
|
|
pages = append(pages, &FreePage{FreePageInfo: info})
|
|
|
|
default:
|
|
PanicOn(fmt.Sprintf("invalid page info type %T", info))
|
|
}
|
|
}
|
|
|
|
return pages, nil
|
|
}
|
|
|
|
// PageInfos returns meta data about all pages in the database.
|
|
func (tx *Tx) PageInfos() ([]PageInfo, error) {
|
|
infos := make([]PageInfo, tx.PageN())
|
|
|
|
// Read meta page info.
|
|
metaInfo, err := tx.metaPageInfo()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
infos[0] = metaInfo
|
|
|
|
// Traverse root record linked list.
|
|
for pgno := metaInfo.RootRecordPageNo; pgno != 0; {
|
|
info, err := tx.rootRecordPageInfo(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
infos[pgno] = info
|
|
pgno = info.Next
|
|
}
|
|
|
|
// Traverse freelist and mark pages as in-use.
|
|
if err := tx.walkPageInfo(infos, metaInfo.FreelistPageNo, "freelist"); err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
// Traverse every b-tree and mark pages as in-use.
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
name, pgno := itr.Next()
|
|
|
|
if err := tx.walkPageInfo(infos, pgno.(uint32), name.(string)); err != nil {
|
|
return nil, err
|
|
}
|
|
}
|
|
|
|
// Build page info objects for each free page.
|
|
freePageSet, err := tx.freePageSet()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
for pgno := range freePageSet {
|
|
infos[pgno] = &FreePageInfo{Pgno: pgno}
|
|
}
|
|
|
|
return infos, nil
|
|
}
|
|
|
|
// metaPageInfo returns page metadata for the meta page.
|
|
func (tx *Tx) metaPageInfo() (*MetaPageInfo, error) {
|
|
buf, _, err := tx.readPage(0)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
return &MetaPageInfo{
|
|
Pgno: 0,
|
|
Magic: readMetaMagic(buf),
|
|
PageN: readMetaPageN(buf),
|
|
WALID: readMetaWALID(buf),
|
|
RootRecordPageNo: readMetaRootRecordPageNo(buf),
|
|
FreelistPageNo: readMetaFreelistPageNo(buf),
|
|
}, nil
|
|
}
|
|
|
|
// rootRecordPageInfo returns page metadata for a root record page.
|
|
func (tx *Tx) rootRecordPageInfo(pgno uint32) (*RootRecordPageInfo, error) {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
return &RootRecordPageInfo{
|
|
Pgno: pgno,
|
|
Next: WalkRootRecordPages(buf),
|
|
}, nil
|
|
}
|
|
|
|
func (tx *Tx) walkPageInfo(infos []PageInfo, root uint32, name string) error {
|
|
return tx.walkTree(root, 0, func(pgno, parent, typ uint32) error {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ {
|
|
case PageTypeLeaf:
|
|
infos[pgno] = &LeafPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
Flags: readFlags(buf),
|
|
CellN: readCellN(buf),
|
|
}
|
|
case PageTypeBranch:
|
|
infos[pgno] = &BranchPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
Flags: readFlags(buf),
|
|
CellN: readCellN(buf),
|
|
}
|
|
case PageTypeBitmap:
|
|
infos[pgno] = &BitmapPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
}
|
|
default:
|
|
PanicOn(fmt.Sprintf("unexpected page type %d for page %d", typ, pgno))
|
|
}
|
|
|
|
return nil
|
|
})
|
|
}
|
|
|
|
// PageData returns the raw page data for a single page.
|
|
func (tx *Tx) PageData(pgno uint32) ([]byte, error) {
|
|
buf, _, err := tx.readPage(pgno)
|
|
return buf, err
|
|
}
|
|
|
|
func (tx *Tx) GetSortedFieldViewList() (fvs []txkey.FieldView, _ error) {
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
it := records.Iterator()
|
|
for !it.Done() {
|
|
k, _ := it.Next()
|
|
root := k.(string)
|
|
fv := txkey.FieldViewFromPrefix([]byte(root))
|
|
fvs = append(fvs, fv)
|
|
}
|
|
return
|
|
}
|
|
|
|
// SnapshotReader returns a reader that provides a snapshot for the current database state.
|
|
func (tx *Tx) SnapshotReader() (io.Reader, error) {
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
}
|
|
return &snapshotReader{tx: tx}, nil
|
|
}
|
|
|
|
type snapshotReader struct {
|
|
tx *Tx
|
|
pgno uint32
|
|
}
|
|
|
|
func (r *snapshotReader) Read(p []byte) (n int, err error) {
|
|
// Exit if we are past the end of the database.
|
|
if r.pgno >= readMetaPageN(r.tx.meta[:]) {
|
|
return 0, io.EOF
|
|
}
|
|
|
|
// Otherwise look up the page data from mmap or page cache and copy it out.
|
|
buf, _, err := r.tx.readPage(r.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
} else if len(p) < len(buf) {
|
|
return 0, io.ErrShortBuffer
|
|
}
|
|
copy(p, buf)
|
|
|
|
// Increment the page number.
|
|
r.pgno++
|
|
|
|
return len(buf), nil
|
|
}
|
|
|
|
type PageInfo interface {
|
|
pageInfo()
|
|
}
|
|
|
|
func (*MetaPageInfo) pageInfo() {}
|
|
func (*RootRecordPageInfo) pageInfo() {}
|
|
func (*LeafPageInfo) pageInfo() {}
|
|
func (*BranchPageInfo) pageInfo() {}
|
|
func (*BitmapPageInfo) pageInfo() {}
|
|
func (*FreePageInfo) pageInfo() {}
|
|
|
|
type MetaPageInfo struct {
|
|
Pgno uint32
|
|
Magic []byte
|
|
PageN uint32
|
|
WALID int64
|
|
RootRecordPageNo uint32
|
|
FreelistPageNo uint32
|
|
}
|
|
|
|
type RootRecordPageInfo struct {
|
|
Pgno uint32
|
|
Next uint32
|
|
}
|
|
|
|
type LeafPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
Flags uint32
|
|
CellN int
|
|
}
|
|
|
|
type BranchPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
Flags uint32
|
|
CellN int
|
|
}
|
|
|
|
type BitmapPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
}
|
|
|
|
type FreePageInfo struct {
|
|
Pgno uint32
|
|
}
|
|
|
|
type Page interface {
|
|
page()
|
|
}
|
|
|
|
func (*MetaPage) page() {}
|
|
func (*RootRecordPage) page() {}
|
|
func (*LeafPage) page() {}
|
|
func (*BranchPage) page() {}
|
|
func (*BitmapPage) page() {}
|
|
func (*FreePage) page() {}
|
|
|
|
type MetaPage struct {
|
|
*MetaPageInfo
|
|
}
|
|
|
|
type RootRecordPage struct {
|
|
*RootRecordPageInfo
|
|
Records []*RootRecord
|
|
}
|
|
|
|
type LeafPage struct {
|
|
*LeafPageInfo
|
|
Cells []*LeafCell
|
|
}
|
|
|
|
// LeafCell represents a leaf cell in the public API.
|
|
type LeafCell struct {
|
|
Key uint64
|
|
Type ContainerType
|
|
Pgno uint32 // bitmap pointer only
|
|
Values []uint16 // array & rle containers only
|
|
}
|
|
|
|
type BranchPage struct {
|
|
*BranchPageInfo
|
|
Cells []*BranchCell
|
|
}
|
|
|
|
// BranchCell represents a branch cell in the public API.
|
|
type BranchCell struct {
|
|
Key uint64
|
|
Flags uint32
|
|
Pgno uint32
|
|
}
|
|
|
|
type BitmapPage struct {
|
|
*BitmapPageInfo
|
|
Values []uint16
|
|
}
|
|
|
|
type FreePage struct {
|
|
*FreePageInfo
|
|
}
|
|
|
|
// dirtyPageMapKeys returns a sorted slice slice of keys for a dirty page map.
|
|
func dirtyPageMapKeys(m map[uint32][]byte) []uint32 {
|
|
a := make([]uint32, 0, len(m))
|
|
for k := range m {
|
|
a = append(a, k)
|
|
}
|
|
sort.Sort(uint32Slice(a))
|
|
return a
|
|
}
|
|
|
|
type uint32Slice []uint32
|
|
|
|
func (p uint32Slice) Len() int { return len(p) }
|
|
func (p uint32Slice) Less(i, j int) bool { return p[i] < p[j] }
|
|
func (p uint32Slice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
|