mirror of
https://github.com/featurebasedb/featurebase.git
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First, it is possible for us to end up allocating *or freeing* pages during a modification of the free list, in a way such that the change to the free list means that when we finish the modification which caused the allocate or free, we've overwritten the inner change. Second, when deallocating trees, we don't actually deallocate the branch nodes themselves. The former causes potentially severe data corruption. The latter causes us to gradually leak pages in a way that we don't notice because we only run those tests during the RBF tests. The fix for this is surprisingly intricate, because of the counterintuitive fact that *allocating* a page means *removing* things from the free list (and thus potentially deallocating free list pages), while *freeing* a page means *adding* things to the free list (and thus potentially needing to allocate pages for the free list). While modifying the free list, any allocations we need always just come from the end of the file; we don't try to reuse free pages. If a page becomes *deallocated* by a free list modification, we don't annotate it in the free list at the instant that it happens; we stash that information until the current modification of the free list happens, then iterate through any such pages. I am pretty sure there's virtually never more than one, and I don't actually know that I can create a case wherein we'd end up with the nested case firing, wherein removing a page from the free list causes us to remove another page, but I think if the free list got large and cluttered and needed rebalancing or something it could maybe happen.
2173 lines
51 KiB
Go
2173 lines
51 KiB
Go
// Copyright 2017 Pilosa Corp.
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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package rbf
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import (
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"bufio"
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"fmt"
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"io"
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"math"
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"sort"
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"strings"
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"sync"
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"github.com/benbjohnson/immutable"
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"github.com/molecula/featurebase/v2/roaring"
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txkey "github.com/molecula/featurebase/v2/short_txkey"
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. "github.com/molecula/featurebase/v2/vprint"
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)
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var _ = txkey.ToString
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// Tx represents a transaction.
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type Tx struct {
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mu sync.RWMutex
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db *DB // parent db
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meta [PageSize]byte // copy of current meta page
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walID int64 // max WAL ID at start of tx
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walPageN int // wal page count
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rootRecords *immutable.SortedMap // read-only cache of root records
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// pageMap holds WAL pages that have not yet been transferred
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// into the database pages. So it can be empty, if the whole previous
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// WAL has been checkpointed back into the database.
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pageMap *PageMap // mapping of database pages to WAL IDs
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writable bool // if true, tx can write
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dirtyPages map[uint32][]byte // updated pages in this tx
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dirtyBitmapPages map[uint32][]byte // updated bitmap pages in this tx
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// If Rollback() has already completed, don't do it again.
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// Note db == nil means that commit has already been done.
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rollbackDone bool
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// DeleteEmptyContainer lets us by default match the roaring
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// behavior where an existing container has all its bits cleared
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// but still sticks around in the database.
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DeleteEmptyContainer bool
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// It is possible for a modification of the free list to cause a page to
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// be allocated or deallocated, which would modify the free list.
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//
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// For the case where pages need to be allocated during free list
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// changes, we can trivially just allocate new pages and not use the
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// free list. That's the simple case...
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modifyingFreelist bool
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// But removals can't be deferred/not-done like that. If a free list
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// change causes us to deallocate a page (such as if we're *allocating*
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// a page, which causes it to be *removed* from the free list), we really
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// do need to record that, but if we try to do it during the update
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// process, things could go horribly wrong. So, we have a transient list
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// of page numbers which have been deallocated, but it happened *during*
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// the modification of the free list. The top-level modification then
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// processes them on its way out, using a defer. During the processing
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// of this list, we *still* have the flag set, and we make a new list
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// while processing the list, so if somehow a pending add to the list
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// manages to trigger a *deallocation* (which I don't think should be
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// happening), we'll process that one after the current list is processed.
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pendingFreelistAdds []uint32
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}
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func (tx *Tx) DBPath() string {
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return tx.db.Path
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}
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// Writable returns true if the transaction can mutate data.
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func (tx *Tx) Writable() bool {
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return tx.writable
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}
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// dirty returns true if any pages have been updated in this tx.
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func (tx *Tx) dirty() bool {
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return tx.dirtyN() != 0
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}
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// dirtyN returns the number of dirty pages.
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func (tx *Tx) dirtyN() int {
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return len(tx.dirtyPages) + len(tx.dirtyBitmapPages)
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}
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// PageN returns the number of pages in the database as seen by this transaction.
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func (tx *Tx) PageN() int {
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return int(readMetaPageN(tx.meta[:]))
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}
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// Commit completes the transaction and persists data changes.
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func (tx *Tx) Commit() error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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}
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// If any pages have been written, ensure we write a new meta page with
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// the commit flag to mark the end of the transaction.
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if tx.dirty() {
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if err := tx.flush(); err != nil {
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return err
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}
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// future plan: after checkpoint is moved to background
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// or not every removeTx, then we can move the
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// tx.db.rootRecords = tx.rootRecords into removeTx().
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// avoid race detector firing on a write race here
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// vs the read of rootRecords at db.Begin()
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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tx.db.rootRecords = tx.rootRecords
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tx.db.pageMap = tx.pageMap
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tx.db.walPageN = tx.walPageN
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return tx.db.removeTx(tx)
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}
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// Disconnect transaction from DB.
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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return tx.db.removeTx(tx)
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}
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func (tx *Tx) Rollback() {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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// allow Rollback to be called more than once.
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if tx.rollbackDone {
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return
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}
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tx.rollbackDone = true
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if tx.db == nil {
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// Commit already done.
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return
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}
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// Disconnect transaction from DB.
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tx.db.mu.Lock()
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defer tx.db.mu.Unlock()
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PanicOn(tx.db.removeTx(tx))
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}
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// Root returns the root page number for a bitmap. Returns 0 if the bitmap does not exist.
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func (tx *Tx) Root(name string) (uint32, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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return tx.root(name)
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}
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func (tx *Tx) root(name string) (uint32, error) {
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records, err := tx.RootRecords()
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if err != nil {
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return 0, err
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}
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pgno, ok := records.Get(name)
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if !ok {
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return 0, ErrBitmapNotFound
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}
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return pgno.(uint32), nil
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}
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// BitmapNames returns a list of all bitmap names.
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func (tx *Tx) BitmapNames() ([]string, error) {
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tx.mu.RLock()
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defer tx.mu.RUnlock()
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if tx.db == nil {
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return nil, ErrTxClosed
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return nil, err
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}
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a := make([]string, 0, records.Len())
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for itr := records.Iterator(); !itr.Done(); {
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k, _ := itr.Next()
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a = append(a, k.(string))
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}
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return a, nil
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}
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// CreateBitmap creates a new empty bitmap with the given name.
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// Returns an error if the bitmap already exists.
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func (tx *Tx) CreateBitmap(name string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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return tx.createBitmap(name)
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}
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func (tx *Tx) createBitmap(name string) error {
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if name == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if already exists.
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if _, ok := records.Get(name); ok {
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return ErrBitmapExists
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}
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// Allocate new root page.
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pgno, err := tx.allocatePgno()
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if err != nil {
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return err
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}
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// Write root page.
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page := make([]byte, PageSize)
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writePageNo(page, pgno)
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writeFlags(page, PageTypeLeaf)
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writeCellN(page, 0)
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if err := tx.writePage(page); err != nil {
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return err
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}
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// Insert into correct index.
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records = records.Set(name, pgno)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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return nil
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}
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// CreateBitmapIfNotExists creates a new empty bitmap with the given name.
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// This is a no-op if the bitmap already exists.
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func (tx *Tx) CreateBitmapIfNotExists(name string) error {
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if err := tx.CreateBitmap(name); err != nil && err != ErrBitmapExists {
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return err
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}
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return nil
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}
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func (tx *Tx) createBitmapIfNotExists(name string) error {
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if err := tx.createBitmap(name); err != nil && err != ErrBitmapExists {
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return err
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}
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return nil
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}
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// DeleteBitmap removes a bitmap with the given name.
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// Returns an error if the bitmap does not exist.
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func (tx *Tx) DeleteBitmap(name string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if name == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if it doesn't exist.
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pgno, ok := records.Get(name)
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if !ok {
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return fmt.Errorf("bitmap does not exist: %q", name)
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}
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// Deallocate all pages in the tree.
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if err := tx.deallocateTree(pgno.(uint32)); err != nil {
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return err
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}
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// Delete from record list & rewrite record pages.
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records = records.Delete(name)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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tx.rootRecords = records
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return nil
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}
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// DeleteBitmapsWithPrefix removes all bitmaps with a given prefix.
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func (tx *Tx) DeleteBitmapsWithPrefix(prefix string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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for itr := records.Iterator(); !itr.Done(); {
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name, pgno := itr.Next()
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// Skip bitmaps without matching prefix.
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if !strings.HasPrefix(name.(string), prefix) {
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continue
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}
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// Deallocate all pages in the tree.
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if err := tx.deallocateTree(pgno.(uint32)); err != nil {
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return err
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}
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records = records.Delete(name.(string))
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}
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// Rewrite record pages.
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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tx.rootRecords = records
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return nil
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}
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// RenameBitmap updates the name of an existing bitmap.
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// Returns an error if the bitmap does not exist.
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func (tx *Tx) RenameBitmap(oldname, newname string) error {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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if tx.db == nil {
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return ErrTxClosed
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} else if !tx.writable {
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return ErrTxNotWritable
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} else if oldname == "" || newname == "" {
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return ErrBitmapNameRequired
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}
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// Read list of root records.
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records, err := tx.RootRecords()
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if err != nil {
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return err
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}
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// Find btree by name. Exit if it doesn't exist.
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pgno, ok := records.Get(oldname)
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if !ok {
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return fmt.Errorf("bitmap does not exist: %q", oldname)
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}
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// Update record name & rewrite record pages.
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records = records.Delete(oldname)
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records = records.Set(newname, pgno)
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if err := tx.writeRootRecordPages(records); err != nil {
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return fmt.Errorf("write bitmaps: %w", err)
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}
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return nil
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}
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// RootRecords returns a list of root records.
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func (tx *Tx) RootRecords() (records *immutable.SortedMap, err error) {
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if tx.rootRecords != nil {
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return tx.rootRecords, nil
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}
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records = immutable.NewSortedMap(nil)
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for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
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page, _, err := tx.readPage(pgno)
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if err != nil {
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return nil, err
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}
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// Read all records on the page.
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a, err := readRootRecords(page)
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if err != nil {
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return nil, err
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}
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for _, rec := range a {
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records = records.Set(rec.Name, rec.Pgno)
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}
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// Read next overflow page number.
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pgno = WalkRootRecordPages(page)
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}
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// Cache result
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tx.rootRecords = records
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return records, nil
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}
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// writeRootRecordPages writes a list of root record pages.
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func (tx *Tx) writeRootRecordPages(records *immutable.SortedMap) (err error) {
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// Release all existing root record pages.
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for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
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page, _, err := tx.readPage(pgno)
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if err != nil {
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return err
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}
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err = tx.freePgno(pgno)
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if err != nil {
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return err
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}
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pgno = WalkRootRecordPages(page)
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}
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// Exit early if no records exist.
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if records.Len() == 0 {
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writeMetaRootRecordPageNo(tx.meta[:], 0)
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return nil
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}
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// Allocate initial root record page.
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pgno, err := tx.allocatePgno()
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if err != nil {
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return err
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}
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writeMetaRootRecordPageNo(tx.meta[:], pgno)
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// Write new root record pages.
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for itr := records.Iterator(); !itr.Done(); {
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// Initialize page & write as many records as will fit.
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page := make([]byte, PageSize)
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writePageNo(page, pgno)
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writeFlags(page, PageTypeRootRecord)
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if err := writeRootRecords(page, itr); err == io.ErrShortBuffer {
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// Allocate next pgno and write overflow if we have remaining records.
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if pgno, err = tx.allocatePgno(); err != nil {
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return err
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}
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writeRootRecordOverflowPgno(page, pgno)
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} else if err != nil {
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return err
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}
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// Write page to disk.
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if err := tx.writePage(page); err != nil {
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return err
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}
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}
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// Update cache records.
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tx.rootRecords = records
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return nil
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}
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// Add sets a given bit on the bitmap.
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func (tx *Tx) Add(name string, a ...uint64) (changeCount int, err error) {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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|
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if tx.db == nil {
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return 0, ErrTxClosed
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} else if !tx.writable {
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return 0, ErrTxNotWritable
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} else if name == "" {
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return 0, ErrBitmapNameRequired
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}
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|
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if err := tx.createBitmapIfNotExists(name); err != nil {
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return 0, err
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}
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c, err := tx.cursor(name)
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if err != nil {
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return 0, err
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}
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defer c.Close()
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for _, v := range a {
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if vchanged, err := c.Add(v); err != nil {
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return changeCount, err
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} else if vchanged {
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changeCount++
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}
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}
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return changeCount, nil
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}
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|
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// Remove unsets a given bit on the bitmap.
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func (tx *Tx) Remove(name string, a ...uint64) (changeCount int, err error) {
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tx.mu.Lock()
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defer tx.mu.Unlock()
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|
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if tx.db == nil {
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return 0, ErrTxClosed
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} else if !tx.writable {
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return 0, ErrTxNotWritable
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} else if name == "" {
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return 0, ErrBitmapNameRequired
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}
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|
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c, err := tx.cursor(name)
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if err == ErrBitmapNotFound {
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return 0, nil
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} else if err != nil {
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return 0, err
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}
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defer c.Close()
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|
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for _, v := range a {
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if vchanged, err := c.Remove(v); err != nil {
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return changeCount, err
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} else if vchanged {
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changeCount++
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}
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}
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return changeCount, nil
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}
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|
|
// Contains returns true if the given bit is set on the bitmap.
|
|
func (tx *Tx) Contains(name string, v uint64) (bool, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if tx.db == nil {
|
|
return false, ErrTxClosed
|
|
} else if name == "" {
|
|
return false, ErrBitmapNameRequired
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return false, nil
|
|
} else if err != nil {
|
|
return false, err
|
|
}
|
|
defer c.Close()
|
|
|
|
return c.Contains(v)
|
|
}
|
|
|
|
// Cursor returns an instance of a cursor this bitmap.
|
|
func (tx *Tx) Cursor(name string) (*Cursor, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
return tx.cursor(name)
|
|
}
|
|
|
|
func (tx *Tx) cursor(name string) (*Cursor, error) {
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
} else if name == "" {
|
|
return nil, ErrBitmapNameRequired
|
|
}
|
|
|
|
root, err := tx.root(name)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
c := tx.db.getCursor(tx)
|
|
c.stack.top = 0
|
|
c.stack.elems[0] = stackElem{pgno: root}
|
|
return c, nil
|
|
}
|
|
|
|
// RoaringBitmap returns a bitmap as a Roaring bitmap.
|
|
func (tx *Tx) RoaringBitmap(name string) (*roaring.Bitmap, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
} else if name == "" {
|
|
return nil, ErrBitmapNameRequired
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return roaring.NewSliceBitmap(), nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
other := roaring.NewSliceBitmap()
|
|
if err := c.First(); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
other.Containers.Put(cell.Key, toContainer(cell, tx))
|
|
}
|
|
}
|
|
|
|
// Container returns a Roaring container by key.
|
|
func (tx *Tx) Container(name string, key uint64) (*roaring.Container, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
return tx.container(name, key)
|
|
}
|
|
|
|
func (tx *Tx) container(name string, key uint64) (*roaring.Container, error) {
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
} else if name == "" {
|
|
return nil, ErrBitmapNameRequired
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if exact, err := c.Seek(key); err != nil || !exact {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return toContainer(cell, tx), nil
|
|
}
|
|
|
|
// PutContainer inserts a container into a bitmap. Overwrites if key already exists.
|
|
func (tx *Tx) PutContainer(name string, key uint64, ct *roaring.Container) error {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
return tx.putContainer(name, key, ct)
|
|
}
|
|
|
|
func (tx *Tx) putContainer(name string, key uint64, ct *roaring.Container) error {
|
|
if tx.DeleteEmptyContainer && ct.N() == 0 {
|
|
return tx.removeContainer(name, key)
|
|
}
|
|
|
|
cell := ConvertToLeafArgs(key, ct)
|
|
|
|
if err := tx.createBitmapIfNotExists(name); err != nil {
|
|
return err
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if _, err := c.Seek(cell.Key); err != nil {
|
|
return err
|
|
}
|
|
|
|
return c.putLeafCell(cell)
|
|
}
|
|
|
|
func (tx *Tx) putContainerWithCursor(cur *Cursor, key uint64, ct *roaring.Container) error {
|
|
if tx.DeleteEmptyContainer && ct.N() == 0 {
|
|
if exact, err := cur.Seek(key); err != nil || !exact {
|
|
return err
|
|
}
|
|
return cur.deleteLeafCell(key)
|
|
}
|
|
return cur.putLeafCell(ConvertToLeafArgs(key, ct))
|
|
}
|
|
|
|
// RemoveContainer removes a container from the bitmap by key.
|
|
func (tx *Tx) RemoveContainer(name string, key uint64) error {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
return tx.removeContainer(name, key)
|
|
}
|
|
|
|
func (tx *Tx) removeContainer(name string, key uint64) error {
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if exact, err := c.Seek(key); err != nil || !exact {
|
|
return err
|
|
}
|
|
|
|
return c.deleteLeafCell(key)
|
|
}
|
|
|
|
// Check verifies the integrity of the database.
|
|
func (tx *Tx) Check() error {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if tx.db == nil {
|
|
return ErrTxClosed
|
|
}
|
|
|
|
if err := tx.checkPageAllocations(); err != nil {
|
|
return fmt.Errorf("page allocations: %w", err)
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// checkPageAllocations ensures that all pages are either in-use or on the freelist.
|
|
func (tx *Tx) checkPageAllocations() error {
|
|
freePageSet, err := tx.freePageSet()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
inusePageSet, err := tx.inusePageSet()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
// Iterate over all pages and ensure they are either in-use or free.
|
|
// They should not be BOTH in-use or free or NEITHER in-use or free.
|
|
pageN := readMetaPageN(tx.meta[:])
|
|
for pgno := uint32(1); pgno < pageN; pgno++ {
|
|
_, isInuse := inusePageSet[pgno]
|
|
_, isFree := freePageSet[pgno]
|
|
|
|
if isInuse && isFree {
|
|
return fmt.Errorf("page in-use & free: pgno=%d", pgno)
|
|
} else if !isInuse && !isFree {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
flags := readFlags(page)
|
|
if flags == PageTypeBranch || flags == PageTypeLeaf {
|
|
return fmt.Errorf("page not in-use & not free: pgno=%d", pgno)
|
|
}
|
|
//assuming its a bitmap so its ok TODO ben?
|
|
return nil
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// freePageSet returns the set of pages in the freelist.
|
|
func (tx *Tx) freePageSet() (map[uint32]struct{}, error) {
|
|
m := make(map[uint32]struct{})
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if err := c.First(); err == io.EOF {
|
|
return m, nil
|
|
} else if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return m, nil
|
|
} else if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
for _, v := range cell.Values(tx) {
|
|
pgno := uint32((cell.Key << 16) | uint64(v))
|
|
m[pgno] = struct{}{}
|
|
}
|
|
}
|
|
}
|
|
|
|
// inusePageSet returns the set of pages in use by the root records or b-trees.
|
|
func (tx *Tx) inusePageSet() (map[uint32]struct{}, error) {
|
|
m := make(map[uint32]struct{})
|
|
m[0] = struct{}{} // meta page
|
|
|
|
// Traverse root record linked list and mark each page as in-use.
|
|
for pgno := readMetaRootRecordPageNo(tx.meta[:]); pgno != 0; {
|
|
m[pgno] = struct{}{}
|
|
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
pgno = WalkRootRecordPages(page)
|
|
}
|
|
|
|
// Traverse freelist and mark pages as in-use.
|
|
if err := tx.walkTree(readMetaFreelistPageNo(tx.meta[:]), 0, func(pgno, parent, typ uint32) error {
|
|
m[pgno] = struct{}{}
|
|
return nil
|
|
}); err != nil {
|
|
return m, err
|
|
}
|
|
|
|
// Traverse every b-tree and mark pages as in-use.
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return m, err
|
|
}
|
|
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
_, pgno := itr.Next()
|
|
|
|
if err := tx.walkTree(pgno.(uint32), 0, func(pgno, parent, typ uint32) error {
|
|
m[pgno] = struct{}{}
|
|
return nil
|
|
}); err != nil {
|
|
return m, err
|
|
}
|
|
}
|
|
|
|
return m, nil
|
|
}
|
|
|
|
// GetSizeBytesWithPrefix returns the size of bitmaps with a given key prefix.
|
|
func (tx *Tx) GetSizeBytesWithPrefix(prefix string) (n uint64, err error) {
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
// Loop over each bitmap in the database.
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
name, pgno := itr.Next()
|
|
|
|
// Skip over any bitmaps that don't have a matching prefix.
|
|
if !strings.HasPrefix(name.(string), prefix) {
|
|
continue
|
|
}
|
|
|
|
// Traverse the bitmap's b-tree and count the bytes for each page.
|
|
if err := tx.walkTree(pgno.(uint32), 0, func(pgno, parent, typ uint32) error {
|
|
n += PageSize
|
|
return nil
|
|
}); err != nil {
|
|
return 0, err
|
|
}
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
// walkTree recursively iterates over a page and all its children.
|
|
func (tx *Tx) walkTree(pgno, parent uint32, fn func(pgno, parent, typ uint32) error) error {
|
|
// Read page and iterate over children.
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
// Execute callback.
|
|
typ := readFlags(page)
|
|
if err := fn(pgno, parent, typ); err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ {
|
|
case PageTypeBranch:
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
cell := readBranchCell(page, i)
|
|
if err := tx.walkTree(cell.ChildPgno, pgno, fn); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
return nil
|
|
case PageTypeLeaf:
|
|
// Execute callback only for bitmap pages pointed to by this leaf.
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
if cell := readLeafCell(page, i); cell.Type == ContainerTypeBitmapPtr {
|
|
if err := fn(toPgno(cell.Data), pgno, PageTypeBitmap); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
return nil
|
|
default:
|
|
return fmt.Errorf("rbf.Tx.forEachTreePage(): invalid page type: pgno=%d type=%d", pgno, typ)
|
|
}
|
|
}
|
|
|
|
// freelistCleanup handles things which we need to add to the free list,
|
|
// because they became free during the process of modifying the free list.
|
|
// It also marks us as done modifying the free list. Expected usage is that
|
|
// you set modifyingFreelist to true, then defer this.
|
|
//
|
|
// if you are modifying the free list, we can't further change the free
|
|
// list during that modification. for page allocations, we can just skip
|
|
// the free list check. for deallocations, though, we do need to mark them
|
|
// as freed at some point. so, if we're modifying the free list when
|
|
// a new freePgno happens, we stash the new pages in here, then apply
|
|
// them afterwards. so far as i know, this can actually only happen
|
|
// during an allocate, when we're removing entries from the free list, and
|
|
// the add path doesn't ever trigger it. so, when we remove entries from
|
|
// the free list, it's possible that doing so frees up pages that were
|
|
// part of the free list, and we then add them. but we don't have to worry
|
|
// about that removing things from the free list, because the add logic
|
|
// already just uses new pages rather than trying to use the free list
|
|
// when it knows the free list is involved.
|
|
func (tx *Tx) freelistCleanup(outErr *error) {
|
|
defer func() {
|
|
// no matter what, we're done with this after this, but we still
|
|
// want it set *while* we do this so nothing we do will have side
|
|
// effects that collide with what we're doing.
|
|
tx.modifyingFreelist = false
|
|
}()
|
|
if len(tx.pendingFreelistAdds) == 0 {
|
|
return
|
|
}
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
for len(tx.pendingFreelistAdds) > 0 {
|
|
var pass []uint32
|
|
pass, tx.pendingFreelistAdds = tx.pendingFreelistAdds, nil
|
|
for _, pgno := range pass {
|
|
if changed, err := c.Add(uint64(pgno)); err != nil {
|
|
if outErr != nil && *outErr == nil {
|
|
*outErr = err
|
|
}
|
|
return
|
|
} else if !changed {
|
|
PanicOn(fmt.Sprintf("rbf.Tx.freePgno(): double free: %d", tx.pendingFreelistAdds))
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
// allocatePgno returns a page number for a new available page. This page may be
|
|
// pulled from the free list or, if no free pages are available, it will be
|
|
// created by extending the file size.
|
|
func (tx *Tx) allocatePgno() (_ uint32, outErr error) {
|
|
if tx.modifyingFreelist {
|
|
return tx.allocateNewPgno(), nil
|
|
}
|
|
// Attempt to find page in freelist.
|
|
pgno, err := tx.nextFreelistPageNo()
|
|
|
|
if err != nil {
|
|
return 0, err
|
|
} else if pgno != 0 {
|
|
tx.modifyingFreelist = true
|
|
defer tx.freelistCleanup(&outErr)
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if changed, err := c.Remove(uint64(pgno)); err != nil {
|
|
return 0, err
|
|
} else if !changed {
|
|
PanicOn(fmt.Sprintf("tx.Tx.allocatePgno(): double alloc: %d", pgno))
|
|
}
|
|
return pgno, nil
|
|
}
|
|
// no freelist pages, fall back
|
|
return tx.allocateNewPgno(), nil
|
|
}
|
|
|
|
// allocateNewPgno requests a new page unconditionally, ignoring the free list.
|
|
func (tx *Tx) allocateNewPgno() uint32 {
|
|
// Increment the total page count by one and return the last page.
|
|
pgno := readMetaPageN(tx.meta[:])
|
|
writeMetaPageN(tx.meta[:], pgno+1)
|
|
return pgno
|
|
}
|
|
|
|
func (tx *Tx) nextFreelistPageNo() (uint32, error) {
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
v := cell.firstValue(tx)
|
|
|
|
pgno := uint32((cell.Key << 16) | uint64(v))
|
|
return pgno, nil
|
|
}
|
|
|
|
// deallocate releases a page number to the freelist.
|
|
func (tx *Tx) freePgno(pgno uint32) (outErr error) {
|
|
if tx.modifyingFreelist {
|
|
tx.pendingFreelistAdds = append(tx.pendingFreelistAdds, pgno)
|
|
return nil
|
|
}
|
|
c := Cursor{tx: tx}
|
|
c.stack.elems[0] = stackElem{pgno: readMetaFreelistPageNo(tx.meta[:])}
|
|
|
|
tx.modifyingFreelist = true
|
|
defer tx.freelistCleanup(&outErr)
|
|
if changed, err := c.Add(uint64(pgno)); err != nil {
|
|
return err
|
|
} else if !changed {
|
|
PanicOn(fmt.Sprintf("rbf.Tx.freePgno(): double free: %d", pgno))
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// deallocateTree recursively all pages in a btree.
|
|
func (tx *Tx) deallocateTree(pgno uint32) error {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ := readFlags(page); typ {
|
|
case PageTypeBranch:
|
|
for i, n := 0, readCellN(page); i < n; i++ {
|
|
cell := readBranchCell(page, i)
|
|
if err := tx.deallocateTree(cell.ChildPgno); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
return tx.freePgno(pgno)
|
|
|
|
case PageTypeLeaf:
|
|
return tx.freePgno(pgno)
|
|
default:
|
|
return fmt.Errorf("rbf.Tx.deallocateTree(): invalid page type: pgno=%d type=%d", pgno, typ)
|
|
}
|
|
}
|
|
|
|
func (tx *Tx) readPage(pgno uint32) (_ []byte, isHeap bool, err error) {
|
|
// Meta page is always cached on the transaction.
|
|
//fmt.Printf("readPage %d\n", pgno)
|
|
if pgno == 0 {
|
|
return tx.meta[:], false, nil
|
|
}
|
|
|
|
// Verify page number requested is within current size of database.
|
|
pageN := readMetaPageN(tx.meta[:])
|
|
if pgno > pageN {
|
|
return nil, false, fmt.Errorf("rbf: page read out of bounds: pgno=%d max=%d", pgno, pageN-1)
|
|
}
|
|
|
|
// Check if page has been updated in this tx.
|
|
if tx.writable {
|
|
if page := tx.dirtyPages[pgno]; page != nil {
|
|
return page, true, nil
|
|
} else if page := tx.dirtyBitmapPages[pgno]; page != nil {
|
|
return page, true, nil
|
|
}
|
|
}
|
|
|
|
// Check if page is remapped in WAL.
|
|
if walID, ok := tx.pageMap.Get(pgno); ok {
|
|
buf, err := tx.db.readWALPageByID(walID)
|
|
return buf, false, err
|
|
}
|
|
|
|
// Otherwise read directly from DB.
|
|
buf, err := tx.db.readDBPage(pgno)
|
|
return buf, false, err
|
|
}
|
|
|
|
func (tx *Tx) writePage(page []byte) error {
|
|
tx.dirtyPages[readPageNo(page)] = page
|
|
return tx.checkTxSize()
|
|
}
|
|
|
|
func (tx *Tx) writeBitmapPage(pgno uint32, page []byte) error {
|
|
tx.dirtyBitmapPages[pgno] = page
|
|
return tx.checkTxSize()
|
|
}
|
|
|
|
func (tx *Tx) checkTxSize() error {
|
|
if (tx.walPageN+tx.dirtyN())*PageSize >= len(tx.db.wal) {
|
|
return ErrTxTooLarge
|
|
}
|
|
return nil
|
|
}
|
|
|
|
func (tx *Tx) AddRoaring(name string, bm *roaring.Bitmap) (changed bool, err error) {
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
|
|
if err := tx.createBitmapIfNotExists(name); err != nil {
|
|
return false, err
|
|
}
|
|
|
|
c, err := tx.cursor(name)
|
|
if err != nil {
|
|
return false, err
|
|
}
|
|
defer c.Close()
|
|
|
|
return c.AddRoaring(bm)
|
|
}
|
|
|
|
func (tx *Tx) leafCellBitmap(pgno uint32) (uint32, []uint64, error) {
|
|
page, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return 0, nil, err
|
|
}
|
|
return pgno, toArray64(page), err
|
|
}
|
|
|
|
func (tx *Tx) ContainerIterator(name string, key uint64) (citer roaring.ContainerIterator, found bool, err error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return &emptyContainerIterator{}, false, nil // nothing available.
|
|
} else if err != nil {
|
|
return nil, false, err
|
|
}
|
|
|
|
exact, err := c.Seek(key)
|
|
if err != nil {
|
|
return nil, false, err
|
|
}
|
|
return &containerIterator{cursor: c}, exact, nil
|
|
}
|
|
|
|
func (tx *Tx) ApplyFilter(name string, key uint64, filter roaring.BitmapFilter) (err error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil // nothing available.
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
|
|
_, err = c.Seek(key)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
f := containerFilter{cursor: c, filter: filter, tx: tx}
|
|
defer f.Close()
|
|
return f.Apply()
|
|
}
|
|
|
|
func (tx *Tx) ForEach(name string, fn func(i uint64) error) error {
|
|
return tx.ForEachRange(name, 0, math.MaxUint64, fn)
|
|
}
|
|
|
|
func (tx *Tx) ForEachRange(name string, start, end uint64, fn func(uint64) error) error {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
defer c.Close()
|
|
|
|
if _, err := c.Seek(highbits(start)); err != nil {
|
|
return err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
return nil
|
|
} else if err != nil {
|
|
return err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
switch cell.Type {
|
|
case ContainerTypeArray:
|
|
for _, lo := range toArray16(cell.Data) {
|
|
v := cell.Key<<16 | uint64(lo)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
case ContainerTypeRLE:
|
|
for _, r := range toInterval16(cell.Data) {
|
|
for lo := int(r.Start); lo <= int(r.Last); lo++ {
|
|
v := cell.Key<<16 | uint64(lo)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
case ContainerTypeBitmap:
|
|
for i, bits := range toArray64(cell.Data) {
|
|
for j := uint(0); j < 64; j++ {
|
|
if bits&(1<<j) == 0 {
|
|
continue
|
|
}
|
|
|
|
v := cell.Key<<16 | (uint64(i) * 64) | uint64(j)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
case ContainerTypeBitmapPtr:
|
|
_, bm, err := c.tx.leafCellBitmap(toPgno(cell.Data))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
for i, bits := range bm {
|
|
for j := uint(0); j < 64; j++ {
|
|
if bits&(1<<j) == 0 {
|
|
continue
|
|
}
|
|
|
|
v := cell.Key<<16 | (uint64(i) * 64) | uint64(j)
|
|
if v < start {
|
|
continue
|
|
} else if v > end {
|
|
return nil
|
|
} else if err := fn(v); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
default:
|
|
PanicOn(fmt.Sprintf("invalid container type: %d", cell.Type))
|
|
}
|
|
}
|
|
}
|
|
|
|
func (tx *Tx) Count(name string) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
var n uint64
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
n += uint64(cell.BitN)
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
func (tx *Tx) Max(name string) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.Last(); err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return uint64((cell.Key << 16) | uint64(cell.lastValue(tx))), nil
|
|
}
|
|
|
|
func (tx *Tx) Min(name string) (uint64, bool, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, false, nil
|
|
} else if err != nil {
|
|
return 0, false, err
|
|
}
|
|
defer c.Close()
|
|
|
|
if err := c.First(); err == io.EOF {
|
|
return 0, false, nil
|
|
} else if err != nil {
|
|
return 0, false, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, false, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
|
|
return uint64((cell.Key << 16) | uint64(cell.firstValue(tx))), true, nil
|
|
}
|
|
|
|
// roaring.countRange counts the number of bits set between [start, end).
|
|
func (tx *Tx) CountRange(name string, start, end uint64) (uint64, error) {
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
if start >= end {
|
|
return 0, nil
|
|
}
|
|
|
|
skey := highbits(start)
|
|
ekey := highbits(end)
|
|
ebits := int32(lowbits(end))
|
|
|
|
csr, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
defer csr.Close()
|
|
|
|
exact, err := csr.Seek(skey)
|
|
_ = exact
|
|
if err == io.EOF {
|
|
return 0, nil
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
var n uint64
|
|
for {
|
|
if err := csr.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return 0, err
|
|
}
|
|
|
|
elem := &csr.stack.elems[csr.stack.top]
|
|
leafPage, _, err := csr.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
}
|
|
c := readLeafCell(leafPage, elem.index)
|
|
|
|
k := c.Key
|
|
if k > ekey {
|
|
break
|
|
}
|
|
|
|
// If range is entirely in one container then just count that range.
|
|
if skey == ekey {
|
|
return uint64(c.countRange(tx, int32(lowbits(start)), ebits)), nil
|
|
}
|
|
// INVAR: skey < ekey
|
|
|
|
// k > ekey handles the case when start > end and where start and end
|
|
// are in different containers. Same container case is already handled above.
|
|
if k > ekey {
|
|
break
|
|
}
|
|
if k == skey {
|
|
n += uint64(c.countRange(tx, int32(lowbits(start)), roaring.MaxContainerVal+1))
|
|
continue
|
|
}
|
|
if k < ekey {
|
|
n += uint64(c.BitN)
|
|
continue
|
|
}
|
|
if k == ekey && ebits > 0 {
|
|
n += uint64(c.countRange(tx, 0, ebits))
|
|
break
|
|
}
|
|
}
|
|
return n, nil
|
|
}
|
|
|
|
func (tx *Tx) OffsetRange(name string, offset, start, endx uint64) (*roaring.Bitmap, error) {
|
|
if lowbits(offset) != 0 {
|
|
PanicOn("offset must not contain low bits")
|
|
} else if lowbits(start) != 0 {
|
|
PanicOn("range start must not contain low bits")
|
|
} else if lowbits(endx) != 0 {
|
|
PanicOn("range endx must not contain low bits")
|
|
}
|
|
|
|
tx.mu.RLock()
|
|
defer tx.mu.RUnlock()
|
|
|
|
c, err := tx.cursor(name)
|
|
if err == ErrBitmapNotFound {
|
|
return roaring.NewSliceBitmap(), nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
defer c.Close()
|
|
|
|
other := roaring.NewSliceBitmap()
|
|
off := highbits(offset)
|
|
hi0, hi1 := highbits(start), highbits(endx)
|
|
|
|
if _, err := c.Seek(hi0); err == io.EOF {
|
|
return other, nil
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for {
|
|
if err := c.Next(); err == io.EOF {
|
|
break
|
|
} else if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
elem := &c.stack.elems[c.stack.top]
|
|
leafPage, _, err := c.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
ckey := cell.Key
|
|
|
|
// >= hi1 is correct b/c endx cannot have any lowbits set.
|
|
if ckey >= hi1 {
|
|
break
|
|
}
|
|
other.Containers.Put(off+(ckey-hi0), toContainer(cell, tx))
|
|
}
|
|
return other, nil
|
|
}
|
|
|
|
// containerFilter is like ContainerIterator, but implements ApplyFilter
|
|
type containerFilter struct {
|
|
cursor *Cursor
|
|
filter roaring.BitmapFilter
|
|
tx *Tx
|
|
header roaring.Container
|
|
body [8192]byte
|
|
}
|
|
|
|
func (s *containerFilter) Close() {
|
|
s.cursor.Close()
|
|
}
|
|
|
|
func (s *containerFilter) Apply() (err error) {
|
|
var minKey roaring.FilterKey
|
|
var cell leafCell
|
|
for err := s.cursor.Next(); err == nil; err = s.cursor.Next() {
|
|
elem := &s.cursor.stack.elems[s.cursor.stack.top]
|
|
leafPage, _, _ := s.cursor.tx.readPage(elem.pgno)
|
|
readLeafCellInto(&cell, leafPage, elem.index)
|
|
key := roaring.FilterKey(cell.Key)
|
|
if key < minKey {
|
|
continue
|
|
}
|
|
s.tx.mu.RUnlock()
|
|
res := s.filter.ConsiderKey(key, int32(cell.BitN))
|
|
s.tx.mu.RLock()
|
|
if res.Err != nil {
|
|
return res.Err
|
|
}
|
|
if res.YesKey <= key && res.NoKey <= key {
|
|
data := intoContainer(cell, s.cursor.tx, &s.header, s.body[:])
|
|
s.tx.mu.RUnlock()
|
|
res = s.filter.ConsiderData(key, data)
|
|
s.tx.mu.RLock()
|
|
if res.Err != nil {
|
|
return res.Err
|
|
}
|
|
}
|
|
minKey = res.NoKey
|
|
if minKey > key+1 {
|
|
_, err := s.cursor.Seek(uint64(minKey))
|
|
if err != nil {
|
|
return err
|
|
}
|
|
}
|
|
}
|
|
return nil
|
|
}
|
|
|
|
// containerIterator wraps Cursor to implement roaring.ContainerIterator.
|
|
type containerIterator struct {
|
|
cursor *Cursor
|
|
}
|
|
|
|
// Close must be called when the client is done
|
|
// with the containerIterator so that the internal
|
|
// Cursor can be recycled.
|
|
func (itr *containerIterator) Close() {
|
|
itr.cursor.Close()
|
|
}
|
|
|
|
// Next moves the iterator to the next container.
|
|
func (itr *containerIterator) Next() bool {
|
|
err := itr.cursor.Next()
|
|
return err == nil
|
|
}
|
|
|
|
// Value returns the current key & container.
|
|
func (itr *containerIterator) Value() (uint64, *roaring.Container) {
|
|
elem := &itr.cursor.stack.elems[itr.cursor.stack.top]
|
|
leafPage, _, _ := itr.cursor.tx.readPage(elem.pgno)
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
return cell.Key, toContainer(cell, itr.cursor.tx)
|
|
}
|
|
|
|
// always returns false for Next()
|
|
type emptyContainerIterator struct{}
|
|
|
|
func (si *emptyContainerIterator) Close() {}
|
|
|
|
func (si *emptyContainerIterator) Next() bool {
|
|
return false
|
|
}
|
|
func (si *emptyContainerIterator) Value() (uint64, *roaring.Container) {
|
|
PanicOn("emptyContainerIterator never has any Values")
|
|
return 0, nil
|
|
}
|
|
|
|
func (tx *Tx) ImportRoaringBits(name string, itr roaring.RoaringIterator, clear bool, log bool, rowSize uint64) (changed int, rowSet map[uint64]int, err error) {
|
|
|
|
// begin write boilerplate
|
|
if tx.db == nil {
|
|
err = ErrTxClosed
|
|
return
|
|
} else if !tx.writable {
|
|
err = ErrTxNotWritable
|
|
return
|
|
} else if name == "" {
|
|
err = ErrBitmapNameRequired
|
|
return
|
|
}
|
|
|
|
tx.mu.Lock()
|
|
defer tx.mu.Unlock()
|
|
|
|
if err = tx.createBitmapIfNotExists(name); err != nil {
|
|
return
|
|
}
|
|
// end write boilerplate
|
|
|
|
n := itr.Len()
|
|
if n == 0 {
|
|
return
|
|
}
|
|
rowSet = make(map[uint64]int)
|
|
|
|
var currRow uint64
|
|
|
|
cur, err := tx.cursor(name)
|
|
if err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
defer cur.Close()
|
|
|
|
for itrKey, synthC := itr.NextContainer(); synthC != nil; itrKey, synthC = itr.NextContainer() {
|
|
|
|
if rowSize != 0 {
|
|
currRow = itrKey / rowSize
|
|
}
|
|
nsynth := int(synthC.N())
|
|
if nsynth == 0 {
|
|
continue
|
|
}
|
|
// INVAR: nsynth > 0
|
|
|
|
// Find existing container, if any.
|
|
var oldC *roaring.Container
|
|
if exact, err := cur.Seek(itrKey); err != nil {
|
|
return changed, rowSet, err
|
|
} else if exact {
|
|
elem := &cur.stack.elems[cur.stack.top]
|
|
leafPage, _, err := cur.tx.readPage(elem.pgno)
|
|
if err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
cell := readLeafCell(leafPage, elem.index)
|
|
oldC = toContainer(cell, tx)
|
|
}
|
|
|
|
if oldC == nil || oldC.N() == 0 {
|
|
// no container at the itrKey in badger (or all zero container).
|
|
if clear {
|
|
// changed of 0 and empty rowSet is perfect, no need to change the defaults.
|
|
continue
|
|
} else {
|
|
changed += nsynth
|
|
rowSet[currRow] += nsynth
|
|
|
|
if err := tx.putContainerWithCursor(cur, itrKey, synthC); err != nil {
|
|
return changed, rowSet, err
|
|
}
|
|
continue
|
|
}
|
|
}
|
|
|
|
if clear {
|
|
|
|
existN := oldC.N() // number of bits set in the old container
|
|
newC := oldC.Difference(synthC)
|
|
|
|
// update rowSet and changes
|
|
if newC.N() == existN {
|
|
// INVAR: do changed need adjusting? nope. same bit count,
|
|
// so no change could have happened.
|
|
continue
|
|
} else {
|
|
changes := int(existN - newC.N())
|
|
changed += changes
|
|
rowSet[currRow] -= changes
|
|
err = tx.putContainerWithCursor(cur, itrKey, newC)
|
|
if err != nil {
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
} else {
|
|
// setting bits
|
|
|
|
existN := oldC.N()
|
|
if existN == roaring.MaxContainerVal+1 {
|
|
// completely full container already, set will do nothing. so changed of 0 default is perfect.
|
|
continue
|
|
}
|
|
if existN == 0 {
|
|
// can nsynth be zero? No, because of the continue/invariant above where nsynth > 0
|
|
changed += nsynth
|
|
rowSet[currRow] += nsynth
|
|
err = tx.putContainerWithCursor(cur, itrKey, synthC)
|
|
if err != nil {
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
|
|
newC := roaring.Union(oldC, synthC) // UnionInPlace was giving us crashes on overly large containers.
|
|
|
|
if roaring.ContainerType(newC) == roaring.ContainerBitmap {
|
|
newC.Repair() // update the bit-count so .n is valid. b/c UnionInPlace doesn't update it.
|
|
}
|
|
if newC.N() != existN {
|
|
changes := int(newC.N() - existN)
|
|
changed += changes
|
|
rowSet[currRow] += changes
|
|
|
|
err = tx.putContainerWithCursor(cur, itrKey, newC)
|
|
if err != nil {
|
|
PanicOn(err)
|
|
return
|
|
}
|
|
continue
|
|
}
|
|
}
|
|
}
|
|
return
|
|
}
|
|
|
|
// flush writes the dirty pages & meta page to the WAL.
|
|
func (tx *Tx) flush() error {
|
|
w := bufio.NewWriterSize(tx.db.walFile, 65536)
|
|
|
|
// Write non-bitmap pages to WAL.
|
|
for _, pgno := range dirtyPageMapKeys(tx.dirtyPages) {
|
|
walID, err := tx.writeToWAL(w, tx.dirtyPages[pgno])
|
|
if err != nil {
|
|
return fmt.Errorf("write page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(pgno, walID)
|
|
}
|
|
|
|
// Write bitmap headers & pages to WAL.
|
|
for _, pgno := range dirtyPageMapKeys(tx.dirtyBitmapPages) {
|
|
// Write header page.
|
|
hdr := make([]byte, PageSize)
|
|
writePageNo(hdr[:], pgno)
|
|
writeFlags(hdr[:], PageTypeBitmapHeader)
|
|
if _, err := tx.writeToWAL(w, hdr); err != nil {
|
|
return fmt.Errorf("write bitmap header page to wal: %w", err)
|
|
}
|
|
|
|
// Write bitmap page.
|
|
walID, err := tx.writeToWAL(w, tx.dirtyBitmapPages[pgno])
|
|
if err != nil {
|
|
return fmt.Errorf("write bitmap page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(pgno, walID)
|
|
}
|
|
|
|
// Write meta page to WAL.
|
|
walID, err := tx.writeToWAL(w, tx.meta[:])
|
|
if err != nil {
|
|
return fmt.Errorf("write meta page to wal: %w", err)
|
|
}
|
|
tx.pageMap = tx.pageMap.Set(uint32(0), walID)
|
|
|
|
// Flush & sync WAL.
|
|
if err := w.Flush(); err != nil {
|
|
return fmt.Errorf("flush wal: %w", err)
|
|
} else if err := tx.db.fsync(tx.db.walFile); err != nil {
|
|
return fmt.Errorf("sync wal: %w", err)
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
func (tx *Tx) writeToWAL(w io.Writer, page []byte) (walID int64, err error) {
|
|
// Determine next WAL ID from cached meta page.
|
|
walID = readMetaWALID(tx.meta[:]) + 1
|
|
|
|
// Update WAL ID on cached meta page.
|
|
writeMetaWALID(tx.meta[:], walID)
|
|
|
|
// Append to WAL and increment WAL size.
|
|
if _, err := w.Write(page); err != nil {
|
|
return 0, err
|
|
}
|
|
tx.walPageN++
|
|
|
|
return walID, nil
|
|
}
|
|
|
|
// Pages returns meta & record data for a list of pages.
|
|
func (tx *Tx) Pages(pgnos []uint32) ([]Page, error) {
|
|
// Read page info for all pages in the database.
|
|
infos, err := tx.PageInfos()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
// Loop over each requested page number and extract additional data.
|
|
var pages []Page
|
|
for _, pgno := range pgnos {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
switch info := infos[pgno].(type) {
|
|
case *MetaPageInfo:
|
|
pages = append(pages, &MetaPage{MetaPageInfo: info})
|
|
|
|
case *RootRecordPageInfo:
|
|
records, err := readRootRecords(buf)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
pages = append(pages, &RootRecordPage{RootRecordPageInfo: info, Records: records})
|
|
|
|
case *LeafPageInfo:
|
|
page := &LeafPage{LeafPageInfo: info}
|
|
cells := make([]leafCell, page.CellN)
|
|
for _, cell := range readLeafCells(buf, cells) {
|
|
other := &LeafCell{
|
|
Key: cell.Key,
|
|
Type: cell.Type,
|
|
}
|
|
|
|
switch cell.Type {
|
|
case ContainerTypeArray, ContainerTypeRLE:
|
|
other.Values = cell.Values(tx)
|
|
case ContainerTypeBitmapPtr:
|
|
other.Pgno = toPgno(cell.Data)
|
|
}
|
|
|
|
page.Cells = append(page.Cells, other)
|
|
}
|
|
pages = append(pages, page)
|
|
|
|
case *BranchPageInfo:
|
|
page := &BranchPage{BranchPageInfo: info}
|
|
for _, cell := range readBranchCells(buf) {
|
|
page.Cells = append(page.Cells, &BranchCell{
|
|
Key: cell.LeftKey,
|
|
Flags: cell.Flags,
|
|
Pgno: cell.ChildPgno,
|
|
})
|
|
}
|
|
pages = append(pages, page)
|
|
|
|
case *BitmapPageInfo:
|
|
pages = append(pages, &BitmapPage{
|
|
BitmapPageInfo: info,
|
|
Values: bitmapValues(toArray64(buf)),
|
|
})
|
|
|
|
case *FreePageInfo:
|
|
pages = append(pages, &FreePage{FreePageInfo: info})
|
|
|
|
default:
|
|
PanicOn(fmt.Sprintf("invalid page info type %T", info))
|
|
}
|
|
}
|
|
|
|
return pages, nil
|
|
}
|
|
|
|
// PageInfos returns meta data about all pages in the database.
|
|
func (tx *Tx) PageInfos() ([]PageInfo, error) {
|
|
infos := make([]PageInfo, tx.PageN())
|
|
|
|
// Read meta page info.
|
|
metaInfo, err := tx.metaPageInfo()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
infos[0] = metaInfo
|
|
|
|
// Traverse root record linked list.
|
|
for pgno := metaInfo.RootRecordPageNo; pgno != 0; {
|
|
info, err := tx.rootRecordPageInfo(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
infos[pgno] = info
|
|
pgno = info.Next
|
|
}
|
|
|
|
// Traverse freelist and mark pages as in-use.
|
|
if err := tx.walkPageInfo(infos, metaInfo.FreelistPageNo, "freelist"); err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
// Traverse every b-tree and mark pages as in-use.
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
for itr := records.Iterator(); !itr.Done(); {
|
|
name, pgno := itr.Next()
|
|
|
|
if err := tx.walkPageInfo(infos, pgno.(uint32), name.(string)); err != nil {
|
|
return nil, err
|
|
}
|
|
}
|
|
|
|
// Build page info objects for each free page.
|
|
freePageSet, err := tx.freePageSet()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
for pgno := range freePageSet {
|
|
infos[pgno] = &FreePageInfo{Pgno: pgno}
|
|
}
|
|
|
|
return infos, nil
|
|
}
|
|
|
|
// metaPageInfo returns page metadata for the meta page.
|
|
func (tx *Tx) metaPageInfo() (*MetaPageInfo, error) {
|
|
buf, _, err := tx.readPage(0)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
return &MetaPageInfo{
|
|
Pgno: 0,
|
|
Magic: readMetaMagic(buf),
|
|
PageN: readMetaPageN(buf),
|
|
WALID: readMetaWALID(buf),
|
|
RootRecordPageNo: readMetaRootRecordPageNo(buf),
|
|
FreelistPageNo: readMetaFreelistPageNo(buf),
|
|
}, nil
|
|
}
|
|
|
|
// rootRecordPageInfo returns page metadata for a root record page.
|
|
func (tx *Tx) rootRecordPageInfo(pgno uint32) (*RootRecordPageInfo, error) {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
return &RootRecordPageInfo{
|
|
Pgno: pgno,
|
|
Next: WalkRootRecordPages(buf),
|
|
}, nil
|
|
}
|
|
|
|
func (tx *Tx) walkPageInfo(infos []PageInfo, root uint32, name string) error {
|
|
return tx.walkTree(root, 0, func(pgno, parent, typ uint32) error {
|
|
buf, _, err := tx.readPage(pgno)
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
switch typ {
|
|
case PageTypeLeaf:
|
|
infos[pgno] = &LeafPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
Flags: readFlags(buf),
|
|
CellN: readCellN(buf),
|
|
}
|
|
case PageTypeBranch:
|
|
infos[pgno] = &BranchPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
Flags: readFlags(buf),
|
|
CellN: readCellN(buf),
|
|
}
|
|
case PageTypeBitmap:
|
|
infos[pgno] = &BitmapPageInfo{
|
|
Pgno: pgno,
|
|
Parent: parent,
|
|
Tree: name,
|
|
}
|
|
default:
|
|
PanicOn(fmt.Sprintf("unexpected page type %d for page %d", typ, pgno))
|
|
}
|
|
|
|
return nil
|
|
})
|
|
}
|
|
|
|
// PageData returns the raw page data for a single page.
|
|
func (tx *Tx) PageData(pgno uint32) ([]byte, error) {
|
|
buf, _, err := tx.readPage(pgno)
|
|
return buf, err
|
|
}
|
|
|
|
func (tx *Tx) GetSortedFieldViewList() (fvs []txkey.FieldView, _ error) {
|
|
records, err := tx.RootRecords()
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
it := records.Iterator()
|
|
for !it.Done() {
|
|
k, _ := it.Next()
|
|
root := k.(string)
|
|
fv := txkey.FieldViewFromPrefix([]byte(root))
|
|
fvs = append(fvs, fv)
|
|
}
|
|
return
|
|
}
|
|
|
|
// SnapshotReader returns a reader that provides a snapshot for the current database state.
|
|
func (tx *Tx) SnapshotReader() (io.Reader, error) {
|
|
if tx.db == nil {
|
|
return nil, ErrTxClosed
|
|
}
|
|
return &snapshotReader{tx: tx}, nil
|
|
}
|
|
|
|
type snapshotReader struct {
|
|
tx *Tx
|
|
pgno uint32
|
|
}
|
|
|
|
func (r *snapshotReader) Read(p []byte) (n int, err error) {
|
|
// Exit if we are past the end of the database.
|
|
if r.pgno >= readMetaPageN(r.tx.meta[:]) {
|
|
return 0, io.EOF
|
|
}
|
|
|
|
// Otherwise look up the page data from mmap or page cache and copy it out.
|
|
buf, _, err := r.tx.readPage(r.pgno)
|
|
if err != nil {
|
|
return 0, err
|
|
} else if len(p) < len(buf) {
|
|
return 0, io.ErrShortBuffer
|
|
}
|
|
copy(p, buf)
|
|
|
|
// Increment the page number.
|
|
r.pgno++
|
|
|
|
return len(buf), nil
|
|
}
|
|
|
|
type PageInfo interface {
|
|
pageInfo()
|
|
}
|
|
|
|
func (*MetaPageInfo) pageInfo() {}
|
|
func (*RootRecordPageInfo) pageInfo() {}
|
|
func (*LeafPageInfo) pageInfo() {}
|
|
func (*BranchPageInfo) pageInfo() {}
|
|
func (*BitmapPageInfo) pageInfo() {}
|
|
func (*FreePageInfo) pageInfo() {}
|
|
|
|
type MetaPageInfo struct {
|
|
Pgno uint32
|
|
Magic []byte
|
|
PageN uint32
|
|
WALID int64
|
|
RootRecordPageNo uint32
|
|
FreelistPageNo uint32
|
|
}
|
|
|
|
type RootRecordPageInfo struct {
|
|
Pgno uint32
|
|
Next uint32
|
|
}
|
|
|
|
type LeafPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
Flags uint32
|
|
CellN int
|
|
}
|
|
|
|
type BranchPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
Flags uint32
|
|
CellN int
|
|
}
|
|
|
|
type BitmapPageInfo struct {
|
|
Pgno uint32
|
|
Parent uint32
|
|
Tree string
|
|
}
|
|
|
|
type FreePageInfo struct {
|
|
Pgno uint32
|
|
}
|
|
|
|
type Page interface {
|
|
page()
|
|
}
|
|
|
|
func (*MetaPage) page() {}
|
|
func (*RootRecordPage) page() {}
|
|
func (*LeafPage) page() {}
|
|
func (*BranchPage) page() {}
|
|
func (*BitmapPage) page() {}
|
|
func (*FreePage) page() {}
|
|
|
|
type MetaPage struct {
|
|
*MetaPageInfo
|
|
}
|
|
|
|
type RootRecordPage struct {
|
|
*RootRecordPageInfo
|
|
Records []*RootRecord
|
|
}
|
|
|
|
type LeafPage struct {
|
|
*LeafPageInfo
|
|
Cells []*LeafCell
|
|
}
|
|
|
|
// LeafCell represents a leaf cell in the public API.
|
|
type LeafCell struct {
|
|
Key uint64
|
|
Type ContainerType
|
|
Pgno uint32 // bitmap pointer only
|
|
Values []uint16 // array & rle containers only
|
|
}
|
|
|
|
type BranchPage struct {
|
|
*BranchPageInfo
|
|
Cells []*BranchCell
|
|
}
|
|
|
|
// BranchCell represents a branch cell in the public API.
|
|
type BranchCell struct {
|
|
Key uint64
|
|
Flags uint32
|
|
Pgno uint32
|
|
}
|
|
|
|
type BitmapPage struct {
|
|
*BitmapPageInfo
|
|
Values []uint16
|
|
}
|
|
|
|
type FreePage struct {
|
|
*FreePageInfo
|
|
}
|
|
|
|
// dirtyPageMapKeys returns a sorted slice slice of keys for a dirty page map.
|
|
func dirtyPageMapKeys(m map[uint32][]byte) []uint32 {
|
|
a := make([]uint32, 0, len(m))
|
|
for k := range m {
|
|
a = append(a, k)
|
|
}
|
|
sort.Sort(uint32Slice(a))
|
|
return a
|
|
}
|
|
|
|
type uint32Slice []uint32
|
|
|
|
func (p uint32Slice) Len() int { return len(p) }
|
|
func (p uint32Slice) Less(i, j int) bool { return p[i] < p[j] }
|
|
func (p uint32Slice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
|