featurebase/ctl/import.go
reesporte eab6174388 make pql.Decimal.Value a private big.Int field
This ensures that we can't overflow when adding `pql.Decimal`s together. The
only place we can possibly overflow is when converting pql.Decimal to an Int64,
but that is a risk we have to take. Also, the only place we do this is in our
ToRowser. We could maybe change that to strings, so the presentation of data
doesn't indicate an overflow, but that is a later decision to make. It will
also involve fixing the generate-proto-grpc make command, because that's broken
rn.
2022-06-06 16:44:01 -05:00

380 lines
10 KiB
Go

// Copyright 2021 Molecula Corp. All rights reserved.
package ctl
import (
"context"
"encoding/csv"
"fmt"
"io"
"math"
"os"
"strconv"
"time"
pilosa "github.com/molecula/featurebase/v3"
"github.com/molecula/featurebase/v3/authn"
"github.com/molecula/featurebase/v3/pql"
"github.com/molecula/featurebase/v3/server"
"github.com/pkg/errors"
)
// TODO(rdp): add refresh token to this as well
// ImportCommand represents a command for bulk importing data.
type ImportCommand struct { // nolint: maligned
// Destination host and port.
Host string `json:"host"`
// Name of the index & field to import into.
Index string `json:"index"`
Field string `json:"field"`
// Options for the index to be created if it doesn't exist
IndexOptions pilosa.IndexOptions
// Options for the field to be created if it doesn't exist
FieldOptions pilosa.FieldOptions
// CreateSchema ensures the schema exists before import
CreateSchema bool
// Clear clears the import data as opposed to setting it.
Clear bool
// Filenames to import from.
Paths []string `json:"paths"`
// Size of buffer used to chunk import.
BufferSize int `json:"bufferSize"`
// Enables sorting of data file before import.
Sort bool `json:"sort"`
// Reusable client.
client *pilosa.InternalClient
// Standard input/output
*pilosa.CmdIO
TLS server.TLSConfig
AuthToken string
}
// NewImportCommand returns a new instance of ImportCommand.
func NewImportCommand(stdin io.Reader, stdout, stderr io.Writer) *ImportCommand {
return &ImportCommand{
CmdIO: pilosa.NewCmdIO(stdin, stdout, stderr),
BufferSize: 10000000,
}
}
// Run executes the main program execution.
func (cmd *ImportCommand) Run(ctx context.Context) error {
logger := cmd.Logger()
// Validate arguments.
// Index and field are validated early before the files are parsed.
if cmd.Index == "" {
return pilosa.ErrIndexRequired
} else if cmd.Field == "" {
return pilosa.ErrFieldRequired
} else if len(cmd.Paths) == 0 {
return errors.New("path required")
}
// Create a client to the server.
client, err := commandClient(cmd)
if err != nil {
return errors.Wrap(err, "creating client")
}
cmd.client = client
if cmd.AuthToken != "" {
ctx = context.WithValue(
ctx,
authn.ContextValueAccessToken,
"Bearer "+cmd.AuthToken,
)
}
if cmd.CreateSchema {
if cmd.FieldOptions.Type == "" {
// set the correct type for the field
if cmd.FieldOptions.TimeQuantum != "" {
cmd.FieldOptions.Type = pilosa.FieldTypeTime
} else if !cmd.FieldOptions.Min.EqualTo(pql.NewDecimal(0, 0)) || !cmd.FieldOptions.Max.EqualTo(pql.NewDecimal(0, 0)) {
cmd.FieldOptions.Type = pilosa.FieldTypeInt
} else {
cmd.FieldOptions.Type = pilosa.FieldTypeSet
cmd.FieldOptions.CacheType = pilosa.CacheTypeRanked
cmd.FieldOptions.CacheSize = pilosa.DefaultCacheSize
}
}
err := cmd.ensureSchema(ctx)
if err != nil {
return errors.Wrap(err, "ensuring schema")
}
}
// Determine the field type in order to correctly handle the input data.
fieldType := pilosa.DefaultFieldType
schema, err := cmd.client.Schema(ctx)
if err != nil {
return errors.Wrap(err, "getting schema")
}
var useColumnKeys, useRowKeys bool
for _, index := range schema {
if index.Name == cmd.Index {
useColumnKeys = index.Options.Keys
for _, field := range index.Fields {
if field.Name == cmd.Field {
useRowKeys = field.Options.Keys
fieldType = field.Options.Type
break
}
}
break
}
}
// Import each path and import by shard.
for _, path := range cmd.Paths {
logger.Printf("parsing: %s", path)
if err := cmd.importPath(ctx, fieldType, useColumnKeys, useRowKeys, path); err != nil {
return err
}
}
return nil
}
func (cmd *ImportCommand) ensureSchema(ctx context.Context) error {
err := cmd.client.EnsureIndex(ctx, cmd.Index, cmd.IndexOptions)
if err != nil {
return errors.Wrap(err, "creating index")
}
err = cmd.client.EnsureFieldWithOptions(ctx, cmd.Index, cmd.Field, cmd.FieldOptions)
if err != nil {
return errors.Wrap(err, "creating field")
}
return nil
}
// importPath parses a path into bits and imports it to the server.
func (cmd *ImportCommand) importPath(ctx context.Context, fieldType string, useColumnKeys, useRowKeys bool, path string) error {
// If fieldType is `int`, treat the import data as values to be range-encoded.
if fieldType == pilosa.FieldTypeInt || fieldType == pilosa.FieldTypeDecimal {
return cmd.bufferValues(ctx, useColumnKeys, fieldType == pilosa.FieldTypeDecimal, path)
}
return cmd.bufferBits(ctx, useColumnKeys, useRowKeys, path)
}
// bufferBits buffers slices of bits to be imported as a batch.
func (cmd *ImportCommand) bufferBits(ctx context.Context, useColumnKeys, useRowKeys bool, path string) error {
var r *csv.Reader
if path != "-" {
// Open file for reading.
f, err := os.Open(path)
if err != nil {
return errors.Wrap(err, "opening file")
}
defer f.Close()
// Read rows as bits.
r = csv.NewReader(f)
} else {
r = csv.NewReader(cmd.Stdin)
}
r.FieldsPerRecord = -1
rnum := 0
req := &pilosa.ImportRequest{
Index: cmd.Index,
Field: cmd.Field,
Shard: ^uint64(0),
}
batchRecs := 0 // records in this batch
lastTime := 0 // last record that had a timestamp
for {
rnum++
// Read CSV row.
record, err := r.Read()
if err == io.EOF {
break
} else if err != nil {
return errors.Wrap(err, "reading")
}
// Ignore blank rows.
if record[0] == "" {
continue
} else if len(record) < 2 {
return fmt.Errorf("bad column count on row %d: col=%d", rnum, len(record))
}
// Parse row id.
if useRowKeys {
req.RowKeys = append(req.RowKeys, record[0])
} else {
var id uint64
if id, err = strconv.ParseUint(record[0], 10, 64); err != nil {
return fmt.Errorf("invalid row id on row %d: %q", rnum, record[0])
}
req.RowIDs = append(req.RowIDs, id)
}
// Parse column id.
if useColumnKeys {
req.ColumnKeys = append(req.ColumnKeys, record[1])
} else {
var id uint64
if id, err = strconv.ParseUint(record[1], 10, 64); err != nil {
return fmt.Errorf("invalid column id on row %d: %q", rnum, record[1])
}
req.ColumnIDs = append(req.ColumnIDs, id)
}
batchRecs++
// Parse time, if exists.
if len(record) > 2 && record[2] != "" {
t, err := time.Parse(pilosa.TimeFormat, record[2])
if err != nil {
return fmt.Errorf("invalid timestamp on row %d: %q", rnum, record[2])
}
if lastTime < batchRecs {
req.Timestamps = append(req.Timestamps, make([]int64, batchRecs-lastTime)...)
}
req.Timestamps = append(req.Timestamps, t.UnixNano())
lastTime = batchRecs
}
// If we've reached the buffer size then import bits.
if batchRecs == cmd.BufferSize {
// pad timestamps out with 0s
if lastTime > 0 && lastTime < batchRecs {
req.Timestamps = append(req.Timestamps, make([]int64, batchRecs-lastTime)...)
}
if err := cmd.importBits(ctx, req); err != nil {
return err
}
req.ColumnIDs = req.ColumnIDs[:0]
req.RowIDs = req.RowIDs[:0]
req.ColumnKeys = req.ColumnKeys[:0]
req.RowKeys = req.RowKeys[:0]
req.Timestamps = req.Timestamps[:0]
lastTime = 0
batchRecs = 0
}
}
// If there are still bits in the buffer then flush them.
if batchRecs == 0 {
return nil
}
if lastTime > 0 && lastTime < batchRecs {
req.Timestamps = append(req.Timestamps, make([]int64, batchRecs-lastTime)...)
}
return cmd.importBits(ctx, req)
}
// importBits sends batches of bits to the server.
func (cmd *ImportCommand) importBits(ctx context.Context, req *pilosa.ImportRequest) error {
req.Shard = ^uint64(0)
return cmd.client.Import(ctx, nil, req, &pilosa.ImportOptions{Clear: cmd.Clear})
}
// bufferValues buffers slices of record identifiers and values to be imported as a batch.
func (cmd *ImportCommand) bufferValues(ctx context.Context, useColumnKeys, parseAsFloat bool, path string) error {
req := &pilosa.ImportValueRequest{
Index: cmd.Index,
Field: cmd.Field,
Shard: math.MaxUint64,
}
var r *csv.Reader
if path != "-" {
// Open file for reading.
f, err := os.Open(path)
if err != nil {
return errors.Wrap(err, "opening file")
}
defer f.Close()
// Read rows as bits.
r = csv.NewReader(f)
} else {
r = csv.NewReader(cmd.Stdin)
}
r.FieldsPerRecord = -1
rnum := 0
for {
rnum++
// Read CSV row.
record, err := r.Read()
if err == io.EOF {
break
} else if err != nil {
return errors.Wrap(err, "reading")
}
// Ignore blank rows.
if record[0] == "" {
continue
} else if len(record) < 2 {
return fmt.Errorf("bad column count on row %d: col=%d", rnum, len(record))
}
// Parse column id.
if useColumnKeys {
req.ColumnKeys = append(req.ColumnKeys, record[0])
} else if columnID, err := strconv.ParseUint(record[0], 10, 64); err == nil {
req.ColumnIDs = append(req.ColumnIDs, columnID)
} else {
return fmt.Errorf("invalid column id on row %d: %q", rnum, record[0])
}
// Parse value.
if parseAsFloat {
value, err := strconv.ParseFloat(record[1], 64)
if err != nil {
return errors.Wrapf(err, "parseing value '%s' as float", record[1])
}
req.FloatValues = append(req.FloatValues, value)
} else {
value, err := strconv.ParseInt(record[1], 10, 64)
if err != nil {
return errors.Wrapf(err, "invalid value on row %d: %q", rnum, record[1])
}
req.Values = append(req.Values, value)
}
// If we've reached the buffer size then import the batch.
if len(req.ColumnKeys) == cmd.BufferSize || len(req.ColumnIDs) == cmd.BufferSize {
if err := cmd.client.ImportValue(ctx, nil, req, &pilosa.ImportOptions{Clear: cmd.Clear}); err != nil {
return errors.Wrap(err, "importing values")
}
req.ColumnIDs = req.ColumnIDs[:0]
req.ColumnKeys = req.ColumnKeys[:0]
req.Values = req.Values[:0]
req.FloatValues = req.FloatValues[:0]
}
}
// If there are still values in the buffer then flush them.
return errors.Wrap(cmd.client.ImportValue(ctx, nil, req, &pilosa.ImportOptions{Clear: cmd.Clear}), "importing values")
}
func (cmd *ImportCommand) TLSHost() string {
return cmd.Host
}
func (cmd *ImportCommand) TLSConfiguration() server.TLSConfig {
return cmd.TLS
}