featurebase/view.go
Seebs b25eb8f596 Sources and Generations: tracking mmapped files
This code represents an attempt at providing reliable tracking
of whether any bitmaps still in use have access to a given block
of mmapped data, allowing us to unmap the data when nothing is using
it anymore.

The basic approach is as follows: Each mmap is associated with
a new object, called a "generation". A generation reflects
a particular instance of a given file being mapped. When a
bitmap is built from an mmapped data source, the bitmap is
given a pointer to the generation as its Source. When bitmap
operations combine containers from other bitmaps, they
produce new bitmaps that are tagged with the combined set of
sources.

When we snapshot a file, or for some other reason wish to remap
it, the corresponding bitmap has all its containers updated to
use the new storage, and the bitmap's source is changed. However,
previously-handed-out containers might still have references to the
old storage. Those containers would be in bitmaps with the old
source.

After a bunch of study of trying to reference-count and track
this, I realized: We don't actually need to do that, because we
already have something suitable for determining whether anything
can reach a given object. It's the garbage collector.

So we set a finalizer on the generation object, which handles
unmapping. There's additional sanity-checks here to confirm things
like "we thought this generation should be expiring", and we
track timestamps. We could also have things check whether a
given bitmap's source was marked as obsolete "a while ago", but
that isn't implemented yet.

There's a debug version of this which tracks finalization, creation,
and ending timestamps, and has a call to provide diagnostics for
this. Identical generation IDs get separated out with random
suffixes in this case -- there's sometimes a second or third
instance of the same name due to a holder closing and reopening,
but this basically only happens in testing.

Note that generations are still used even when there's no mmapping,
but unless debugging is turned on, they shouldn't propagate much --
we don't consider a generation to be the source of a bitmap unless
the bitmap actually mapped things from that generation's mmapped
storage, or debugging is on.

There's a couple of other, possibly more subtle, changes and
bug fixes that got caught by the testing on this:
* If a fragment is partially opened and then opening some later
  part fails, we close the earlier parts before returning the
  error so we aren't leaving it partially open.
* Several operations on segments which were requesting that a
  frozen copy of a bitmap be created are now actually *replacing*
  their bitmap with the frozen bitmap, rather than discarding it.
* intersectRunRun, if it decides to create an array or bitmap,
  will yield that container instead of discarding it.

And why all of this? Why, so we can actually implement the thing
where when a fragment has a valid roaring bitmap, but the ops log
is corrupt, we can truncate the corrupt part of the ops log and
reopen it. Which I did.

When the generationdebug build tag is in use, every generation
has a finalizer all the time. When it's not, they only get finalizers
when we expect them to be done -- say, when closing a fragment.
This is because finalizers appear to be possibly-expensive.

There's some logical cleanup to openStorage here, dividing part
of its work into applyStorage and importStorage, which have a common
case for handling "there's no data in this file".
2019-11-12 12:14:29 -06:00

506 lines
13 KiB
Go

// Copyright 2017 Pilosa Corp.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package pilosa
import (
"context"
"fmt"
"os"
"path/filepath"
"runtime"
"strconv"
"strings"
"sync"
"time"
"github.com/pilosa/pilosa/v2/logger"
"github.com/pilosa/pilosa/v2/pql"
"github.com/pilosa/pilosa/v2/roaring"
"github.com/pilosa/pilosa/v2/stats"
"github.com/pkg/errors"
"golang.org/x/sync/errgroup"
)
// View layout modes.
const (
viewStandard = "standard"
viewBSIGroupPrefix = "bsig_"
)
// view represents a container for field data.
type view struct {
mu sync.RWMutex
path string
index string
field string
name string
fieldType string
cacheType string
cacheSize uint32
// Fragments by shard.
fragments map[uint64]*fragment
broadcaster broadcaster
stats stats.StatsClient
rowAttrStore AttrStore
logger logger.Logger
snapshotQueue chan *fragment
}
// newView returns a new instance of View.
func newView(path, index, field, name string, fieldOptions FieldOptions) *view {
return &view{
path: path,
index: index,
field: field,
name: name,
fieldType: fieldOptions.Type,
cacheType: fieldOptions.CacheType,
cacheSize: fieldOptions.CacheSize,
fragments: make(map[uint64]*fragment),
broadcaster: NopBroadcaster,
stats: stats.NopStatsClient,
logger: logger.NopLogger,
}
}
// open opens and initializes the view.
func (v *view) open() error {
// Never keep a cache for field views.
if strings.HasPrefix(v.name, viewBSIGroupPrefix) {
v.cacheType = CacheTypeNone
}
if err := func() error {
// Ensure the view's path exists.
v.logger.Debugf("ensure view path exists: %s", v.path)
if err := os.MkdirAll(v.path, 0777); err != nil {
return errors.Wrap(err, "creating view directory")
} else if err := os.MkdirAll(filepath.Join(v.path, "fragments"), 0777); err != nil {
return errors.Wrap(err, "creating fragments directory")
}
v.logger.Debugf("open fragments for index/field/view: %s/%s/%s", v.index, v.field, v.name)
if err := v.openFragments(); err != nil {
return errors.Wrap(err, "opening fragments")
}
return nil
}(); err != nil {
v.close()
return err
}
v.logger.Debugf("successfully opened index/field/view: %s/%s/%s", v.index, v.field, v.name)
return nil
}
var workQueue = make(chan struct{}, runtime.NumCPU()*2)
// openFragments opens and initializes the fragments inside the view.
func (v *view) openFragments() error {
file, err := os.Open(filepath.Join(v.path, "fragments"))
if os.IsNotExist(err) {
return nil
} else if err != nil {
return errors.Wrap(err, "opening fragments directory")
}
defer file.Close()
fis, err := file.Readdir(0)
if err != nil {
return errors.Wrap(err, "reading fragments directory")
}
eg, ctx := errgroup.WithContext(context.Background())
var mu sync.Mutex
fileLoop:
for _, loopFi := range fis {
select {
case <-ctx.Done():
break fileLoop
default:
fi := loopFi
if fi.IsDir() {
continue
}
// Parse filename into integer.
shard, err := strconv.ParseUint(filepath.Base(fi.Name()), 10, 64)
if err != nil {
v.logger.Debugf("WARNING: couldn't use non-integer file as shard in index/field/view %s/%s/%s: %s", v.index, v.field, v.name, fi.Name())
continue
}
workQueue <- struct{}{}
v.logger.Debugf("open index/field/view/fragment: %s/%s/%s/%d", v.index, v.field, v.name, shard)
eg.Go(func() error {
defer func() {
<-workQueue
}()
frag := v.newFragment(v.fragmentPath(shard), shard)
if err := frag.Open(); err != nil {
return fmt.Errorf("open fragment: shard=%d, err=%s", frag.shard, err)
}
frag.RowAttrStore = v.rowAttrStore
v.logger.Debugf("add index/field/view/fragment to view.fragments: %s/%s/%s/%d", v.index, v.field, v.name, shard)
mu.Lock()
v.fragments[frag.shard] = frag
mu.Unlock()
return nil
})
}
}
return eg.Wait()
}
// close closes the view and its fragments.
func (v *view) close() error {
v.mu.Lock()
defer v.mu.Unlock()
// Close all fragments.
eg, ctx := errgroup.WithContext(context.Background())
fragLoop:
for _, loopFrag := range v.fragments {
select {
case <-ctx.Done():
break fragLoop
default:
frag := loopFrag
workQueue <- struct{}{}
eg.Go(func() error {
defer func() {
<-workQueue
}()
if err := frag.Close(); err != nil {
return errors.Wrap(err, "closing fragment")
}
return nil
})
}
}
err := eg.Wait()
v.fragments = make(map[uint64]*fragment)
return err
}
// flags returns a set of flags for the underlying fragments.
func (v *view) flags() byte {
var flag byte
if v.fieldType == FieldTypeInt || v.fieldType == FieldTypeDecimal {
flag |= roaringFlagBSIv2
}
return flag
}
// availableShards returns a bitmap of shards which contain data.
func (v *view) availableShards() *roaring.Bitmap {
v.mu.RLock()
defer v.mu.RUnlock()
b := roaring.NewBitmap()
for shard := range v.fragments {
_, _ = b.Add(shard) // ignore error, no writer attached
}
return b
}
// fragmentPath returns the path to a fragment in the view.
func (v *view) fragmentPath(shard uint64) string {
return filepath.Join(v.path, "fragments", strconv.FormatUint(shard, 10))
}
// Fragment returns a fragment in the view by shard.
func (v *view) Fragment(shard uint64) *fragment {
v.mu.RLock()
defer v.mu.RUnlock()
return v.fragments[shard]
}
// allFragments returns a list of all fragments in the view.
func (v *view) allFragments() []*fragment {
v.mu.Lock()
defer v.mu.Unlock()
other := make([]*fragment, 0, len(v.fragments))
for _, fragment := range v.fragments {
other = append(other, fragment)
}
return other
}
// recalculateCaches recalculates the cache on every fragment in the view.
func (v *view) recalculateCaches() {
for _, fragment := range v.allFragments() {
fragment.RecalculateCache()
}
}
// CreateFragmentIfNotExists returns a fragment in the view by shard.
func (v *view) CreateFragmentIfNotExists(shard uint64) (*fragment, error) {
v.mu.Lock()
defer v.mu.Unlock()
// Find fragment in cache first.
if frag := v.fragments[shard]; frag != nil {
return frag, nil
}
// Initialize and open fragment.
frag := v.newFragment(v.fragmentPath(shard), shard)
if err := frag.Open(); err != nil {
return nil, errors.Wrap(err, "opening fragment")
}
frag.RowAttrStore = v.rowAttrStore
v.fragments[shard] = frag
broadcastChan := make(chan struct{})
go func() {
msg := &CreateShardMessage{
Index: v.index,
Field: v.field,
Shard: shard,
}
// Broadcast a message that a new max shard was just created.
err := v.broadcaster.SendSync(msg)
if err != nil {
v.logger.Printf("broadcasting create shard: %v", err)
}
close(broadcastChan)
}()
// We want to wait until the broadcast is complete, but what if it
// takes a really long time? So we time out.
select {
case <-broadcastChan:
case <-time.After(50 * time.Millisecond):
v.logger.Debugf("broadcasting create shard took >50ms")
}
return frag, nil
}
func (v *view) newFragment(path string, shard uint64) *fragment {
frag := newFragment(path, v.index, v.field, v.name, shard, v.flags())
frag.CacheType = v.cacheType
frag.CacheSize = v.cacheSize
frag.Logger = v.logger
frag.stats = v.stats
frag.snapshotQueue = v.snapshotQueue
if v.fieldType == FieldTypeMutex {
frag.mutexVector = newRowsVector(frag)
} else if v.fieldType == FieldTypeBool {
frag.mutexVector = newBoolVector(frag)
}
return frag
}
// deleteFragment removes the fragment from the view.
func (v *view) deleteFragment(shard uint64) error {
v.mu.Lock()
defer v.mu.Unlock()
fragment := v.fragments[shard]
if fragment == nil {
return ErrFragmentNotFound
}
v.logger.Printf("delete fragment: (%s/%s/%s) %d", v.index, v.field, v.name, shard)
// Close data files before deletion.
if err := fragment.Close(); err != nil {
return errors.Wrap(err, "closing fragment")
}
// Delete fragment file.
if err := os.Remove(fragment.path); err != nil {
return errors.Wrap(err, "deleting fragment file")
}
// Delete fragment cache file.
if err := os.Remove(fragment.cachePath()); err != nil {
v.logger.Printf("no cache file to delete for shard %d", shard)
}
delete(v.fragments, shard)
return nil
}
// row returns a row for a shard of the view.
func (v *view) row(rowID uint64) *Row {
row := NewRow()
for _, frag := range v.allFragments() {
fr := frag.row(rowID)
if fr == nil {
continue
}
row.Merge(fr)
}
return row
}
// setBit sets a bit within the view.
func (v *view) setBit(rowID, columnID uint64) (changed bool, err error) {
shard := columnID / ShardWidth
frag, err := v.CreateFragmentIfNotExists(shard)
if err != nil {
return changed, err
}
return frag.setBit(rowID, columnID)
}
// clearBit clears a bit within the view.
func (v *view) clearBit(rowID, columnID uint64) (changed bool, err error) {
shard := columnID / ShardWidth
frag := v.Fragment(shard)
if frag == nil {
return false, nil
}
return frag.clearBit(rowID, columnID)
}
// value uses a column of bits to read a multi-bit value.
func (v *view) value(columnID uint64, bitDepth uint) (value int64, exists bool, err error) {
shard := columnID / ShardWidth
frag, err := v.CreateFragmentIfNotExists(shard)
if err != nil {
return value, exists, err
}
return frag.value(columnID, bitDepth)
}
// setValue uses a column of bits to set a multi-bit value.
func (v *view) setValue(columnID uint64, bitDepth uint, value int64) (changed bool, err error) {
shard := columnID / ShardWidth
frag, err := v.CreateFragmentIfNotExists(shard)
if err != nil {
return changed, err
}
return frag.setValue(columnID, bitDepth, value)
}
// sum returns the sum & count of a field.
func (v *view) sum(filter *Row, bitDepth uint) (sum int64, count uint64, err error) {
for _, f := range v.allFragments() {
fsum, fcount, err := f.sum(filter, bitDepth)
if err != nil {
return sum, count, err
}
sum += fsum
count += fcount
}
return sum, count, nil
}
// min returns the min and count of a field.
func (v *view) min(filter *Row, bitDepth uint) (min int64, count uint64, err error) {
var minHasValue bool
for _, f := range v.allFragments() {
fmin, fcount, err := f.min(filter, bitDepth)
if err != nil {
return min, count, err
}
// Don't consider a min based on zero columns.
if fcount == 0 {
continue
}
if !minHasValue {
min = fmin
minHasValue = true
count += fcount
continue
}
if fmin < min {
min = fmin
count += fcount
}
}
return min, count, nil
}
// max returns the max and count of a field.
func (v *view) max(filter *Row, bitDepth uint) (max int64, count uint64, err error) {
for _, f := range v.allFragments() {
fmax, fcount, err := f.max(filter, bitDepth)
if err != nil {
return max, count, err
}
if fcount > 0 && fmax > max {
max = fmax
count += fcount
}
}
return max, count, nil
}
// rangeOp returns rows with a field value encoding matching the predicate.
func (v *view) rangeOp(op pql.Token, bitDepth uint, predicate int64) (*Row, error) {
r := NewRow()
for _, frag := range v.allFragments() {
other, err := frag.rangeOp(op, bitDepth, predicate)
if err != nil {
return nil, err
}
r = r.Union(other)
}
return r, nil
}
// upgradeViewBSIv2 upgrades the fragments of v. Returns ok true if any fragment upgraded.
func upgradeViewBSIv2(v *view, bitDepth uint) (ok bool, _ error) {
// If reading from an old formatted BSI roaring bitmap, upgrade and reload.
for _, frag := range v.allFragments() {
if frag.storage.Flags&roaringFlagBSIv2 == 1 {
continue // already upgraded, skip
}
ok = true // mark as upgraded, requires reload
if tmpPath, err := upgradeRoaringBSIv2(frag, bitDepth); err != nil {
return ok, errors.Wrap(err, "upgrading bsi v2")
} else if err := frag.closeStorage(); err != nil {
return ok, errors.Wrap(err, "closing after bsi v2 upgrade")
} else if err := os.Rename(tmpPath, frag.path); err != nil {
return ok, errors.Wrap(err, "renaming after bsi v2 upgrade")
} else if err := frag.openStorage(true); err != nil {
return ok, errors.Wrap(err, "re-opening after bsi v2 upgrade")
}
}
return ok, nil
}
// ViewInfo represents schema information for a view.
type ViewInfo struct {
Name string `json:"name"`
}
type viewInfoSlice []*ViewInfo
func (p viewInfoSlice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
func (p viewInfoSlice) Len() int { return len(p) }
func (p viewInfoSlice) Less(i, j int) bool { return p[i].Name < p[j].Name }