featurebase/translate.go
CLoZengineer 9887a6c6d2 fix: updating code to meet linting requirements (#2171)
* removes unused filesize function

* removes ioutil usage

* updates ioutil.ReadAll to io.ReadAll

* updates ioutil.TempFile to os.CreateTemp

* updates ioutil.TempDir to os.MkdirTemp

* updates ioutil.ReadAll to os.ReadAll

* update ioutil.WriteFile to os.WriteFile

* updates ioutil.Discard to io.Discard

* updates ioutil.ReadDir to os.ReadDir where applicable

* removes unused code in idk

* creates type to use for context value keys

* replaces assert.Nil with assert.NoError for error checks
2022-10-11 11:06:31 -04:00

669 lines
18 KiB
Go

// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"context"
"encoding/json"
"fmt"
"io"
"sort"
"sync"
"github.com/featurebasedb/featurebase/v3/disco"
"github.com/featurebasedb/featurebase/v3/ingest"
"github.com/featurebasedb/featurebase/v3/roaring"
"github.com/pkg/errors"
)
const (
// translateStoreDir is the subdirctory into which the partitioned
// translate store data is stored.
translateStoreDir = "_keys"
)
// Translate store errors.
var (
ErrTranslateStoreClosed = errors.New("translate store closed")
ErrTranslateStoreReaderClosed = errors.New("translate store reader closed")
ErrReplicationNotSupported = errors.New("replication not supported")
ErrTranslateStoreReadOnly = errors.New("translate store could not find or create key, translate store read only")
ErrTranslateStoreNotFound = errors.New("translate store not found")
ErrTranslatingKeyNotFound = errors.New("translating key not found")
)
// TranslateStore is the storage for translation string-to-uint64 values.
// For BoltDB implementation an empty string will be converted into the sentinel byte slice:
//
// var emptyKey = []byte{
// 0x00, 0x00, 0x00,
// 0x4d, 0x54, 0x4d, 0x54, // MTMT
// 0x00,
// 0xc2, 0xa0, // NO-BREAK SPACE
// 0x00,
// }
type TranslateStore interface { // TODO: refactor this interface; readonly should be part of the type and replication should be an impl detail
io.Closer
// Returns the maximum ID set on the store.
MaxID() (uint64, error)
// Retrieves the partition ID associated with the store.
// Only applies to index stores.
PartitionID() int
// Sets & retrieves whether the store is read-only.
ReadOnly() bool
SetReadOnly(v bool)
// FindKeys looks up the ID for each key.
// Keys are not created if they do not exist.
// Missing keys are not considered errors, so the length of the result may be less than that of the input.
FindKeys(keys ...string) (map[string]uint64, error)
// CreateKeys maps all keys to IDs, creating the IDs if they do not exist.
// If the translator is read-only, this will return an error.
CreateKeys(keys ...string) (map[string]uint64, error)
// Match finds IDs of strings matching the filter.
Match(filter func([]byte) bool) ([]uint64, error)
// Converts an integer ID to its associated string key.
TranslateID(id uint64) (string, error)
TranslateIDs(id []uint64) ([]string, error)
// Forces the write of a key/id pair, even if read only. Used by replication.
ForceSet(id uint64, key string) error
// Returns a reader from the given ID offset.
EntryReader(ctx context.Context, offset uint64) (TranslateEntryReader, error)
// WriteTo ensures that the TranslateStore implements io.WriterTo.
// It should write the contents of the store to the writer.
WriteTo(io.Writer) (int64, error)
// ReadFrom ensures that the TranslateStore implements io.ReaderFrom.
// It should read from the reader and replace the data store with
// the read payload.
ReadFrom(io.Reader) (int64, error)
Delete(records *roaring.Bitmap) (Commitor, error)
}
// This implements ingest's key translator interface, which differs
// slightly because we want to be able to do fast lookups on arbitrary
// IDs which are not necessarily contiguous small values, so the []string
// from TranslateIDs isn't a good fit.
type ingestKeyTranslator struct {
store TranslateStore
}
var _ ingest.KeyTranslator = &ingestKeyTranslator{}
func (i ingestKeyTranslator) TranslateKeys(keys ...string) (map[string]uint64, error) {
return i.store.CreateKeys(keys...)
}
func (i ingestKeyTranslator) TranslateIDs(ids ...uint64) (map[uint64]string, error) {
keys, err := i.store.TranslateIDs(ids)
if err != nil {
return nil, err
}
if len(keys) != len(ids) {
return nil, fmt.Errorf("translating %d id(s), got %d key(s)", len(ids), len(keys))
}
out := make(map[uint64]string, len(keys))
for i, id := range ids {
out[id] = keys[i]
}
return out, nil
}
func newIngestKeyTranslatorFromStore(s TranslateStore) *ingestKeyTranslator {
return &ingestKeyTranslator{store: s}
}
// TranslatorSummary is returned, for example from the boltdb string key translators,
// by calling ComputeTranslatorSummary(). Non-boltdb mocks, etc no-op that method.
type TranslatorSummary struct {
Index string
// ParitionID is filled for column keys
PartitionID int
NodeID string
StorePath string
IsPrimary bool
IsReplica bool
// PrimaryNodeIndex indexes into the cluster []node array to find the primary
PrimaryNodeIndex int
// Field is filled for row keys
Field string
// Checksum has a blake3 crypto hash of all the keys->ID and all the ID->key mappings
Checksum string
// KeyCount has the number of Key->ID mappings
KeyCount int
// IDCount has the number of ID->Key mappings
IDCount int
// false for RowIDs, true for string-Key column IDs.
IsColKey bool
}
func (s *TranslatorSummary) String() string {
return fmt.Sprintf(`
TranslatorSummary{
Index : %v
PartitionID: %v
NodeID : %v
StorePath : %v
IsPrimary : %v
IsReplica : %v
PrimaryNodeIndex: %v
Field : %v
Checksum: %v
KeyCount: %v
IDCount : %v
IsColKey: %v
}
`,
s.Index,
s.PartitionID,
s.NodeID,
s.StorePath,
s.IsPrimary,
s.IsReplica,
s.PrimaryNodeIndex,
s.Field,
s.Checksum,
s.KeyCount,
s.IDCount,
s.IsColKey,
)
}
// OpenTranslateStoreFunc represents a function for instantiating and opening a TranslateStore.
type OpenTranslateStoreFunc func(path, index, field string, partitionID, partitionN int, fsyncEnabled bool) (TranslateStore, error)
// GenerateNextPartitionedID returns the next ID within the same partition.
func GenerateNextPartitionedID(index string, prev uint64, partitionID, partitionN int) uint64 {
// If the translation store is not partitioned, just return
// the next ID.
if partitionID == -1 {
return prev + 1
}
// Try to use the next ID if it is in the same partition.
// Otherwise find ID in next shard that has a matching partition.
for id := prev + 1; ; id += ShardWidth {
if disco.ShardToShardPartition(index, id/ShardWidth, partitionN) == partitionID {
return id
}
}
}
// TranslateEntryReader represents a stream of translation entries.
type TranslateEntryReader interface {
io.Closer
ReadEntry(entry *TranslateEntry) error
}
// OpenTranslateReaderFunc represents a function for instantiating and opening a TranslateStore.
type OpenTranslateReaderFunc func(ctx context.Context, nodeURL string, offsets TranslateOffsetMap) (TranslateEntryReader, error)
// TranslateEntry represents a key/ID pair from a TranslateStore.
type TranslateEntry struct {
Index string `json:"index,omitempty"`
Field string `json:"field,omitempty"`
ID uint64 `json:"id,omitempty"`
Key string `json:"key,omitempty"`
}
// MultiTranslateEntryReader reads from multiple TranslateEntryReader instances
// and merges them into a single reader.
type MultiTranslateEntryReader struct {
ctx context.Context
cancel func()
wg sync.WaitGroup
ch chan readEntryResponse
readers []TranslateEntryReader
}
// NewMultiTranslateEntryReader returns a new instance of MultiTranslateEntryReader.
func NewMultiTranslateEntryReader(ctx context.Context, readers []TranslateEntryReader) *MultiTranslateEntryReader {
r := &MultiTranslateEntryReader{
readers: readers,
ch: make(chan readEntryResponse),
}
r.ctx, r.cancel = context.WithCancel(ctx)
r.wg.Add(len(r.readers))
for i := range r.readers {
go func(tr TranslateEntryReader) { defer r.wg.Done(); r.monitor(tr) }(r.readers[i])
}
return r
}
// Close stops the reader & child readers and waits for all goroutines to stop.
func (r *MultiTranslateEntryReader) Close() error {
r.cancel()
for i := range r.readers {
r.readers[i].Close() // nolint: errcheck
}
r.wg.Wait()
return nil
}
// ReadEntry reads the next available entry into entry. Returns an error if
// any of the child readers error. Returns io.EOF if reader is closed.
func (r *MultiTranslateEntryReader) ReadEntry(entry *TranslateEntry) error {
if len(r.readers) == 0 {
return io.EOF
}
select {
case <-r.ctx.Done():
return io.EOF
case resp := <-r.ch:
if resp.err != nil {
return resp.err
}
*entry = resp.entry
return nil
}
}
// monitor runs in a separate goroutine and sends entry reads to the channel.
func (r *MultiTranslateEntryReader) monitor(tr TranslateEntryReader) {
for {
var entry TranslateEntry
err := tr.ReadEntry(&entry)
select {
case <-r.ctx.Done():
return
case r.ch <- readEntryResponse{entry: entry, err: err}:
}
}
}
type readEntryResponse struct {
entry TranslateEntry
err error
}
// TranslateOffsetMap maintains a set of offsets for both indexes & fields.
type TranslateOffsetMap map[string]*IndexTranslateOffsetMap
// IndexOffset returns the offset for the given index.
func (m TranslateOffsetMap) IndexPartitionOffset(name string, partitionID int) uint64 {
if m[name] == nil {
return 0
}
return m[name].Partitions[partitionID]
}
// SetIndexOffset sets the offset for the given index.
func (m TranslateOffsetMap) SetIndexPartitionOffset(name string, partitionID int, offset uint64) {
if m[name] == nil {
m[name] = NewIndexTranslateOffsetMap()
}
m[name].Partitions[partitionID] = offset
}
// FieldOffset returns the offset for the given field.
func (m TranslateOffsetMap) FieldOffset(index, name string) uint64 {
if m[index] == nil {
return 0
}
return m[index].Fields[name]
}
// Empty reports whether there are any actual entries in the map. This
// is distinct from len(m) == 0 in that an entry in this map which is
// itself empty doesn't count as non-empty.
func (m TranslateOffsetMap) Empty() bool {
for _, sub := range m {
if !sub.Empty() {
return false
}
}
return true
}
// SetFieldOffset sets the offset for the given field.
func (m TranslateOffsetMap) SetFieldOffset(index, name string, offset uint64) {
if m[index] == nil {
m[index] = NewIndexTranslateOffsetMap()
}
m[index].Fields[name] = offset
}
type IndexTranslateOffsetMap struct {
Partitions map[int]uint64 `json:"partitions"`
Fields map[string]uint64 `json:"fields"`
}
// Empty reports whether this map has neither partitions nor fields.
func (i *IndexTranslateOffsetMap) Empty() bool {
return len(i.Partitions) == 0 && len(i.Fields) == 0
}
func NewIndexTranslateOffsetMap() *IndexTranslateOffsetMap {
return &IndexTranslateOffsetMap{
Partitions: make(map[int]uint64),
Fields: make(map[string]uint64),
}
}
// Ensure type implements interface.
var _ TranslateStore = &InMemTranslateStore{}
// InMemTranslateStore is an in-memory storage engine for mapping keys to int values.
type InMemTranslateStore struct {
mu sync.RWMutex
index string
field string
partitionID int
partitionN int
readOnly bool
keysByID map[uint64]string
idsByKey map[string]uint64
maxID uint64
writeNotify chan struct{}
}
// NewInMemTranslateStore returns a new instance of InMemTranslateStore.
func NewInMemTranslateStore(index, field string, partitionID, partitionN int) *InMemTranslateStore {
return &InMemTranslateStore{
index: index,
field: field,
partitionID: partitionID,
partitionN: partitionN,
keysByID: make(map[uint64]string),
idsByKey: make(map[string]uint64),
writeNotify: make(chan struct{}),
}
}
var _ OpenTranslateStoreFunc = OpenInMemTranslateStore
// OpenInMemTranslateStore returns a new instance of InMemTranslateStore.
// Implements OpenTranslateStoreFunc.
func OpenInMemTranslateStore(rawurl, index, field string, partitionID, partitionN int, fsyncEnabled bool) (TranslateStore, error) {
return NewInMemTranslateStore(index, field, partitionID, partitionN), nil
}
func (s *InMemTranslateStore) Close() error {
return nil
}
// PartitionID returns the partition id the store was initialized with.
func (s *InMemTranslateStore) PartitionID() int {
return s.partitionID
}
// ReadOnly returns true if the store is in read-only mode.
func (s *InMemTranslateStore) ReadOnly() bool {
s.mu.Lock()
defer s.mu.Unlock()
return s.readOnly
}
// SetReadOnly toggles the read-only mode of the store.
func (s *InMemTranslateStore) SetReadOnly(v bool) {
s.mu.Lock()
defer s.mu.Unlock()
s.readOnly = v
}
func (s *InMemTranslateStore) Delete(records *roaring.Bitmap) (Commitor, error) {
s.mu.Lock()
defer s.mu.Unlock()
for _, id := range records.Slice() {
key := s.keysByID[id]
delete(s.keysByID, id)
delete(s.idsByKey, key)
}
return &NopCommitor{}, nil
}
// FindKeys looks up the ID for each key.
// Keys are not created if they do not exist.
// Missing keys are not considered errors, so the length of the result may be less than that of the input.
func (s *InMemTranslateStore) FindKeys(keys ...string) (map[string]uint64, error) {
s.mu.RLock()
defer s.mu.RUnlock()
result := make(map[string]uint64, len(keys))
for _, key := range keys {
id, ok := s.idsByKey[key]
if !ok {
// The key does not exist.
continue
}
result[key] = id
}
return result, nil
}
// CreateKeys maps all keys to IDs, creating the IDs if they do not exist.
// If the translator is read-only, this will return an error.
func (s *InMemTranslateStore) CreateKeys(keys ...string) (map[string]uint64, error) {
s.mu.Lock()
defer s.mu.Unlock()
if s.readOnly {
return nil, ErrTranslateStoreReadOnly
}
result := make(map[string]uint64, len(keys))
for _, key := range keys {
id, ok := s.idsByKey[key]
if !ok {
// The key does not exist.
// Generate a new id and update db.
if s.field == "" {
id = GenerateNextPartitionedID(s.index, s.maxID, s.partitionID, s.partitionN)
} else {
id = s.maxID + 1
}
s.set(id, key)
}
result[key] = id
}
return result, nil
}
func (s *InMemTranslateStore) Match(filter func([]byte) bool) ([]uint64, error) {
s.mu.RLock()
defer s.mu.RUnlock()
var matches []uint64
for key, id := range s.idsByKey {
if filter([]byte(key)) {
matches = append(matches, id)
}
}
sort.Slice(matches, func(i, j int) bool {
return matches[i] < matches[j]
})
return matches, nil
}
// TranslateID converts an integer ID to a string key.
// Returns a blank string if ID does not exist.
func (s *InMemTranslateStore) TranslateID(id uint64) (string, error) {
s.mu.Lock()
defer s.mu.Unlock()
return s.translateID(id), nil
}
// TranslateIDs converts a list of integer IDs to a list of string keys.
func (s *InMemTranslateStore) TranslateIDs(ids []uint64) ([]string, error) {
s.mu.Lock()
defer s.mu.Unlock()
keys := make([]string, len(ids))
for i := range ids {
keys[i] = s.translateID(ids[i])
}
return keys, nil
}
func (s *InMemTranslateStore) translateID(id uint64) string {
return s.keysByID[id]
}
// ForceSet writes the id/key pair to the db. Used by replication.
func (s *InMemTranslateStore) ForceSet(id uint64, key string) error {
s.mu.Lock()
defer s.mu.Unlock()
s.set(id, key)
return nil
}
// set assigns the id/key pair to the store.
func (s *InMemTranslateStore) set(id uint64, key string) {
s.keysByID[id] = key
s.idsByKey[key] = id
if id > s.maxID {
s.maxID = id
}
s.notifyWrite()
}
// WriteNotify returns a channel that is closed when a new entry is written.
func (s *InMemTranslateStore) WriteNotify() <-chan struct{} {
s.mu.RLock()
ch := s.writeNotify
s.mu.RUnlock()
return ch
}
// notifyWrite sends a write notification under write lock.
func (s *InMemTranslateStore) notifyWrite() {
close(s.writeNotify)
s.writeNotify = make(chan struct{})
}
// EntryReader returns an error. Replication is not supported.
func (s *InMemTranslateStore) EntryReader(ctx context.Context, offset uint64) (TranslateEntryReader, error) {
s.mu.Lock()
defer s.mu.Unlock()
return newInMemTranslateEntryReader(ctx, s, offset), nil
}
// WriteTo implements io.WriterTo. It's not efficient or careful, but we
// don't expect to use InMemTranslateStore much, it's mostly there to
// avoid disk load during testing.
func (s *InMemTranslateStore) WriteTo(w io.Writer) (int64, error) {
bytes, err := json.Marshal(s.keysByID)
if err != nil {
return 0, err
}
n, err := w.Write(bytes)
return int64(n), err
}
// ReadFrom implements io.ReaderFrom. It's not efficient or careful, but we
// don't expect to use InMemTranslateStore much, it's mostly there to
// avoid disk load during testing.
func (s *InMemTranslateStore) ReadFrom(r io.Reader) (count int64, err error) {
s.mu.Lock()
defer s.mu.Unlock()
var bytes []byte
bytes, err = io.ReadAll(r)
count = int64(len(bytes))
if err != nil {
return count, err
}
var keysByID map[uint64]string
err = json.Unmarshal(bytes, &keysByID)
if err != nil {
return count, err
}
s.maxID = 0
s.keysByID = keysByID
s.idsByKey = make(map[string]uint64, len(s.keysByID))
for k, v := range s.keysByID {
s.idsByKey[v] = k
if k > s.maxID {
s.maxID = k
}
}
return count, nil
}
// MaxID returns the highest identifier in the store.
func (s *InMemTranslateStore) MaxID() (uint64, error) {
s.mu.RLock()
defer s.mu.RUnlock()
return s.maxID, nil
}
// inMemEntryReader represents a stream of translation entries for an inmem translation store.
type inMemTranslateEntryReader struct {
ctx context.Context
cancel func()
store *InMemTranslateStore
offset uint64
}
func newInMemTranslateEntryReader(ctx context.Context, store *InMemTranslateStore, offset uint64) *inMemTranslateEntryReader {
r := &inMemTranslateEntryReader{
store: store,
offset: offset,
}
r.ctx, r.cancel = context.WithCancel(ctx)
return r
}
// Close stops the reader.
func (r *inMemTranslateEntryReader) Close() error {
r.cancel()
return nil
}
// ReadEntry reads the next available entry.
func (r *inMemTranslateEntryReader) ReadEntry(entry *TranslateEntry) error {
for {
// Wait until our offset is less than the max id.
notify := r.store.WriteNotify()
if maxID, err := r.store.MaxID(); err != nil {
return err
} else if r.offset > maxID {
select {
case <-r.ctx.Done():
return io.EOF
case <-notify:
continue // restart loop
}
}
// Translate key for offset.
key, err := r.store.TranslateID(r.offset)
if err != nil {
return err
}
// Copy id/key pair to entry argument and increment offset for next read.
entry.Index, entry.Field = r.store.index, r.store.field
entry.ID, entry.Key = r.offset, key
r.offset++
return nil
}
}