featurebase/idk/sql/source.go
souhailanoor 2bdf1f5081
FB-1597: unifying idk and featurebase (#2160)
* unifying idk and featurebase: first pass

* resolved conflict with master for gitignore & dockerignore

* deleted binaries that were accidentally pushed to git

* combined gitlab jobs for idk & featurebase

* run go fmt for idk

* updated ssh env variable, and made docker password variable in gitlab env variables

* fixed typo assigning variable name

* trying to fix docker login error

* trying a different solution for docker password

* pass registry

* fixed docker login

* updated paths for idk

* exclude idk tests from featurebase test run

* fix vendor error

* update certificates

* grpc needs to be in version 1.38
genproto, which is imported by big query updates the grpc version to 1.47.0
grpc 1.47.0 causes etcd to deadlock when calling etcd.Close()
the fix is to have a replace in go.mod to specify a specific grpc version

* run go mod tidy

* go mod

* run go mod tidy

* exclude bigquery since it is causing issues and undo grpc replace in go.mod

* fix grpc version

* fix formatting error

* update formatting

* attempt to fix formatting

* update path for code coverage

* update to use current branch binaries, not master

* fix for building idk - path updates

* udpate path for binaries

* update job dependecies

* update docker idk tests to use the current branch registry

* update stages for jobs

* updated job dependencies

* not allow idk s3 dump to fail since it is a dependency for integration tests

* update dependecy for idk tests

* update paths for idk build and code coverage

* download featurebase binary from s3

* pass branch name to all setup scripts

* change to current branch instead of master

* updated sonarcloud

* sonarcloud fix and branch name fix

* trying to speed up pipeline run time

* update stage

* branch name fix + sonar cloud

* sonarcloud
2022-07-28 17:23:16 -05:00

240 lines
5.1 KiB
Go

package sql
import (
"context"
"database/sql"
"io"
"strings"
"time"
_ "github.com/denisenkom/go-mssqldb"
_ "github.com/go-sql-driver/mysql"
_ "github.com/lib/pq"
"github.com/molecula/featurebase/v3/idk"
"github.com/molecula/featurebase/v3/logger"
"github.com/pkg/errors"
)
type Source struct {
feed chan []interface{}
schema []idk.Field
record wikiRecord
rows *sql.Rows
separator string
log logger.Logger
}
func (s *Source) Open() error {
go func() {
defer s.rows.Close()
vals := make([]interface{}, len(s.schema))
lastRow := make([]interface{}, len(s.schema))
for i := 0; i < len(vals); i++ {
vals[i] = new(interface{})
}
n := 0
for s.rows.Next() {
err := s.rows.Scan(vals...)
if err != nil {
s.log.Printf("scanning row '%v'", err)
continue
}
//build message
row := make([]interface{}, len(vals))
for i := 0; i < len(vals); i++ {
item := vals[i].(*interface{})
switch v := (*item).(type) {
case string:
_, isStringArrayField := s.schema[i].(idk.StringArrayField)
if isStringArrayField {
row[i] = s.splitStringArray(v)
} else {
row[i] = v
}
case []byte:
astring := string(v)
_, isStringArrayField := s.schema[i].(idk.StringArrayField)
if isStringArrayField {
row[i] = s.splitStringArray(astring)
} else {
row[i] = astring
}
case time.Time:
row[i] = v
default:
row[i] = v
}
}
//skip the dups
equal := true
for i, r := range lastRow {
switch v := r.(type) {
case []string:
a, ok := row[i].([]string)
if len(a) != len(v) {
equal = false
break
}
if ok {
for z, o := range v {
if o != a[z] {
equal = false
break
}
}
} else {
equal = false
break
}
default:
if v != row[i] {
equal = false
break
}
}
}
n++
if !equal {
s.feed <- row
if (n%10000 == 0 && n < 100000) || (n%100000 == 0) {
s.log.Printf("Processed: %d", n)
}
}
copy(lastRow, row)
}
s.log.Printf("Last %+v", vals)
if s.rows.Err() != nil {
s.log.Printf("%v", s.rows.Err())
return
}
s.rows.Close()
close(s.feed)
}()
return nil
}
func (s *Source) Record() (idk.Record, error) {
vals, ok := <-s.feed
if ok {
copy(s.record.record, vals)
return s.record, nil
}
return nil, io.EOF
}
func (s *Source) Schema() []idk.Field {
return s.schema
}
func NewSource(driver, connString, cmd, separator string, c chan []interface{}, log logger.Logger) (*Source, error) {
conn, err := sql.Open(driver, connString)
if err != nil {
return nil, err
}
rows, err := conn.Query(cmd)
if err != nil {
return nil, errors.Wrap(err, ": error executing query")
}
cols, err := rows.Columns()
if err != nil {
return nil, err
}
schema := make([]idk.Field, len(cols))
//encoding the type information of the form SELECT col AS col_IDField...
for i, c := range cols {
schema[i], err = idk.HeaderToField(c, log)
if err != nil {
return nil, errors.Wrapf(err, "making field from '%s'", c)
}
if schema[i] == nil {
return nil, errors.Errorf("nil field for col '%s' but no error", c)
}
}
log.Printf("Schema: %v", schema)
return &Source{
feed: c,
record: wikiRecord{
record: make([]interface{}, len(cols)),
},
schema: schema,
rows: rows,
separator: separator,
log: log,
}, nil
}
type wikiRecord struct {
record []interface{}
}
func (wr wikiRecord) Commit(ctx context.Context) error {
return nil
}
func (wr wikiRecord) Data() []interface{} {
return wr.record
}
type Main struct {
idk.Main `flag:"!embed"`
Driver string `help:"key used for finding go sql database driver"`
ConnectionString string `short:"g" help:"credentials for connecting to sql database"`
RowExpr string `short:"w" help:"sql + type description on input"`
StringArraySeparator string `help:"separator used to delineate values in string array"`
}
func NewMain() *Main {
m := &Main{
Main: *idk.NewMain(),
Driver: "postgres",
ConnectionString: "postgres://user:password@localhost:5432/defaultindex?sslmode=disable",
StringArraySeparator: ",",
}
m.Main.Namespace = "ingester_sql"
m.NewSource = func() (idk.Source, error) {
if m.RowExpr == "" {
return nil, errors.New("must provide a Row Expression")
}
source, err := NewSource(m.Driver, m.ConnectionString, m.RowExpr, m.StringArraySeparator, make(chan []interface{}), m.Log())
if err != nil {
return nil, errors.Wrap(err, "creating source")
}
err = source.Open()
if err != nil {
return nil, errors.Wrap(err, "opening source")
}
return source, nil
}
return m
}
// splitIfStringArray splits `astring` by each separator in s.separator
func (s Source) splitStringArray(astring string) []string {
return strings.FieldsFunc(astring, Splitter(s.separator))
}
// Splitter returns a splitter based on runes in a separator
func Splitter(separator string) func(rune) bool {
return func(r rune) bool {
for _, val := range separator {
if r == val {
return true
}
}
return false
}
}
func (s *Source) Close() error {
return nil
}