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No commits in common. "master" and "v0.3.0" have entirely different histories.

1681 changed files with 21758 additions and 587607 deletions

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name: CD
on:
push:
branches: ["master"]
workflow_dispatch:
jobs:
validate:
runs-on: ubuntu-latest
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- uses: actions/setup-go@v3
with:
go-version: "^1.19.1"
- run: go version
- name: golangci-lint
uses: golangci/golangci-lint-action@v3
with:
args: --timeout=5m
- name: go vet
run: go vet ./...
- name: test
run: go test ./...
release:
needs: validate
runs-on: ubuntu-latest
outputs:
version: ${{ steps.semrel.outputs.version }}
steps:
- name: go-semantic-release
id: semrel
uses: go-semantic-release/action@v1.17.0
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
build:
needs: release
runs-on: ubuntu-latest
strategy:
matrix:
goos:
- "darwin"
- "linux"
- "windows"
goarch:
- "amd64"
- "arm64"
steps:
- uses: actions/checkout@v3
- uses: actions/setup-go@v3
with:
go-version: "^1.19.1"
- name: build
run: GOOS=${{ matrix.goos }} GOARCH=${{ matrix.goarch }} go build -o ./build/${{ matrix.goos }}-${{ matrix.goarch }}
- name: Upload binaries to release
uses: svenstaro/upload-release-action@v2
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
file: ./build/${{ matrix.goos }}-${{ matrix.goarch }}
asset_name: ${{ matrix.goos }}-${{ matrix.goarch }}
tag: ${{ github.ref }}

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@ -1,57 +0,0 @@
# This is a basic workflow to help you get started with Actions
name: CI
# Controls when the workflow will run
on:
pull_request:
branches: ["master"]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
validate-title:
name: Validate PR title
runs-on: ubuntu-latest
steps:
- uses: go-semantic-release/action@v1
id: semrel
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
dry: true
# golangci-lint must be run separately from "validate" as there are go mod issues if you run it after the vet
golangci:
name: lint
runs-on: ubuntu-latest
steps:
- uses: actions/setup-go@v3
with:
go-version: 1.19
- uses: actions/checkout@v3
- name: golangci-lint
uses: golangci/golangci-lint-action@v3
with:
# Optional: version of golangci-lint to use in form of v1.2 or v1.2.3 or `latest` to use the latest version
# version: v1.29
args: --timeout=8m
validate:
name: Code Checks
runs-on: ubuntu-latest
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- uses: actions/setup-go@v3
with:
go-version: "^1.19.1"
- run: go version
- name: go vet
run: go vet ./...

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@ -1,25 +0,0 @@
name: Release
on: workflow_dispatch
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
goos:
- "darwin"
- "linux"
goarch:
- "amd64"
- "arm64"
steps:
- uses: actions/checkout@v3
- uses: actions/setup-go@v3
with:
go-version: "^1.19.1"
- name: build
run: GOOS=${{ matrix.goos }} GOARCH=${{ matrix.goarch }} go build -o ./build/${{ matrix.goos }}-${{ matrix.goarch }}

85
.gitignore vendored
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@ -1,87 +1,2 @@
default.etcd/
*.test
vendor
.protoc-gen-gofast
.DS_Store
build
*~
release-pilosa-fsck.*.*.tar.gz
/log.*
/tourna.log.*
pilosa
/featurebase
*.dot
.idea/
.*.swp
.terraform/
*.tfstate
launch.json
.terraform.lock.hcl
__pycache__/
report.xml
outputs.json
builds/
*.tfstate.backup
.vscode
batch/testdata/batch*.out
idk/testdata/idk*.out
idk/testenv/certs/*
# copy of .gitignore from archived idk repo
# Compiled Object files, Static and Dynamic libs (Shared Objects)
*.o
*.a
*.so
# Folders
_obj
_test
# Architecture specific extensions/prefixes
*.[568vq]
[568vq].out
*.cgo1.go
*.cgo2.c
_cgo_defun.c
_cgo_gotypes.go
_cgo_export.*
_testmain.go
*.exe
*.test
*.prof
vendor
.terraform
terraform.tfstate*
bin
build
testenv
.pulled
pilosa-sec-data-idk
.idea/
tags.dot
*.log
*.swp
*__debug_bin
# SQL3
/sql3/sql3.html
staticcheck.conf
.quick
dax/dax-data
coverage-from-docker
*.client_id.txt

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@ -1,747 +0,0 @@
# You will see a couple of instances of:
# PKG_LIST=$(go list ./... | grep -Ev 'internal/clustertests|simulacraData|batch|idk|v3/dax/test/dax' | paste -s -d, -)
# This gets us a package list, comma-separated, which excludes the batch
# and IDK tests, and a couple of subdirs with specialized stuff. We can
# then use this with -coverpkg, or we can use ${PKG_LIST//,/ } to get a
# space-separated list for use with `go test` to run the tests for those
# directories only.
include:
- local: /.gitlab/batch-ci.yml
- template: Security/SAST.gitlab-ci.yml
- template: Security/License-Scanning.gitlab-ci.yml
- template: Security/Dependency-Scanning.gitlab-ci.yml
default:
retry:
max: 2 # This is confusing but this means "3 runs at max".
when:
- unknown_failure
- api_failure
- runner_system_failure
- job_execution_timeout
- stuck_or_timeout_failure
variables:
GOVERSION: "1.19.3"
GOFUTURE: "latest"
CI_IMAGE: "${CI_REGISTRY_IMAGE}/ci-builder:0.0.1"
CI_PRE_CLONE_SCRIPT: |
set -x
stages:
- ci_image_build
- lint
- test
- build
- post build
- integration
- gauntlet
- performance
- nonblocking
- cleanup_build
gosec-sast:
allow_failure: false
before_script:
- export GOPRIVATE=github.com/molecula/*
- apk add openssh-client
- eval $(ssh-agent -s)
- echo "$FB_SSH_PRIVATE_KEY" | tr -d '\r' | ssh-add -
- mkdir -p ~/.ssh
- chmod 700 ~/.ssh
- git config --global --add url."ssh://git@github.com/".insteadOf "https://github.com/"
- ssh-keygen -F github.com || echo "$SSH_KNOWN_HOSTS_HASHED" >> ~/.ssh/known_hosts
- chmod 644 ~/.ssh/known_hosts
script:
## securego/gosec works for scanning, but not converting to the gitlab report format.
- go install github.com/securego/gosec/v2/cmd/gosec@v2.12.0
- gosec -fmt=json -out=gosec.json -tests ./... || true
## gitlab's wrapper for gosec works for converting, but not for scanning.
- go install 'gitlab.com/gitlab-org/security-products/analyzers/gosec@v1.4.0'
- gosec convert gosec.json > gl-sast-report.json
.go-cache:
variables:
GOPATH: $CI_PROJECT_DIR/.go
before_script:
- mkdir -p .go
cache:
# this caching strategy makes it so each branch uses the same cache
key: "$CI_COMMIT_REF_SLUG"
paths:
- .go/pkg/mod/
smoke build:
image: golang:$GOVERSION
extends: .go-cache
stage: lint
allow_failure: false
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- echo "Let's just see if it compiles... (sometimes the linter gives unclear errors if it doesn't)"
- go build ./...
golangci-lint:
image: golangci/golangci-lint:v1.46.2
extends: .go-cache
stage: lint
allow_failure: true
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- echo "Checking for issues in new code"
- golangci-lint run -v --timeout=8m
go mod tidy:
stage: lint
image: golang:$GOVERSION
extends: .go-cache
rules:
- if: '$CI_COMMIT_TAG == null && ($CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web")'
script:
- go mod tidy
- git diff --exit-code -- go.mod go.sum
build lattice:
stage: test
image: node:14
variables:
AWS_PROFILE: "service-fb-ci"
AWS_ACCESS_KEY_ID: $AWS_FBCI_ACCESS_KEY_ID
AWS_SECRET_ACCESS_KEY: $AWS_FBCI_SECRET_ACCESS_KEY
CI: "false"
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
before_script:
- curl -sS "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"
- unzip -qq awscliv2.zip
- ./aws/install
- aws --version
- aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
- aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
- aws configure set region "us-east-2"
- aws configure set aws_profile $AWS_PROFILE
- aws sts get-caller-identity # ensure we have a valid AWS login
script:
- cd lattice
- cache=$(find . -type f -print0 | sort -z | xargs -0 sha1sum | sha1sum | cut -d ' ' -f 1)
- echo "'$cache'"
- echo "looking for s3://molecula-artifact-storage/lattice/$cache/build.tar.gz"
# if is for if we had a cache object in S3
# else is for if we didn't have a cache object (and have to build).
- |
if aws s3api head-object --bucket molecula-artifact-storage --key "lattice/$cache/build.tar.gz"; then
# download object, extract, name the folder `build`
aws s3 cp "s3://molecula-artifact-storage/lattice/$cache/build.tar.gz" build.tar.gz
tar -xf build.tar.gz
else # cache file not found
yarn install --frozen-lockfile # CI needs to enforce that the lockfile doesn't need to be updated
yarn build
tar -czvf "$cache.tar.gz" build/
aws s3 mv "$cache.tar.gz" "s3://molecula-artifact-storage/lattice/$cache/build.tar.gz"
touch "$CI_COMMIT_SHA"
aws s3 mv "$CI_COMMIT_SHA" "s3://molecula-artifact-storage/lattice/$cache/$CI_COMMIT_SHA"
fi
- | # Ensure that we have build directory after the caching step
if [ ! -d build ]; then
echo "no build directory, erroring out" || exit 1
fi
- mv build ../
- cd ../
- rm -r lattice
- mv build lattice
- tar -czvf lattice.tar.gz lattice
artifacts:
paths:
- lattice.tar.gz
build featurebase:
stage: test
image: golang:$GOVERSION
extends: .go-cache
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- rm -r lattice
- tar -xvf lattice.tar.gz
- go install github.com/rakyll/statik@v0.1.7
- $GOPATH/bin/statik -src=lattice
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- |
for goos in "darwin" "linux"; do
for goarch in "amd64" "arm64"; do
GOOS="${goos}" GOARCH="${goarch}" make build FLAGS="-o featurebase_${goos}_${goarch}"
done
done
artifacts:
paths:
- featurebase_*
needs:
- job: build lattice
build fbsql amd64:
stage: test
variables:
BUILD_NAME: build_${CI_COMMIT_SHA}_${CI_CONCURRENT_ID}
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- date
- GOOS="linux" GOARCH="amd64" make docker-build-fbsql BUILD_CGO=1
- GOOS="darwin" GOARCH="amd64" make docker-build-fbsql
artifacts:
paths:
- ./build/fbsql_*
build fbsql arm64:
stage: test
variables:
BUILD_NAME: build_${CI_COMMIT_SHA}_${CI_CONCURRENT_ID}
tags:
- shell-arm64
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- date
- GOOS="linux" GOARCH="arm64" make docker-build-fbsql BUILD_CGO=1
- GOOS="darwin" GOARCH="arm64" make docker-build-fbsql
artifacts:
paths:
- ./build/fbsql_*
build amd container fb:
stage: test
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
before_script:
- echo "${DOCKER_DEPLOY_TOKEN}" | docker login -u ${DOCKER_DEPLOY_USER} --password-stdin ${CI_REGISTRY}
script:
- tag=${CI_REGISTRY_IMAGE}/featurebase:linux-amd64-${CI_COMMIT_REF_SLUG}
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- docker build --build-arg GO_VERSION=$GOVERSION --build-arg ARCH=amd64 --build-arg SOURCE_DATE_EPOCH=$SOURCE_DATE_EPOCH -t $tag -f .gitlab/Dockerfile .
- docker push $tag
- echo Created docker featurebase image with tag "$tag"
needs:
- job: build featurebase
run jest tests:
stage: test
image: node:14
variables:
CI: "true"
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- echo "Testing lattice..."
- cd lattice
- npm install --force
- npm test -- --coverage --testResultsProcessor=jest-sonar-reporter
artifacts:
paths:
- lattice/coverage/lcov.info
# We run go test -race on all the standard packages, skipping the ones that have their
# own separate tests. we spin this off as nonblocking because it used to take a really
# long time and even now it's pretty slow.
run go tests race:
stage: nonblocking # don't let this job block any other jobs because it takes much longer than the other tests.
image: golang:$GOVERSION
extends: .go-cache
variables:
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_DATABASE: run_go_tests_race
POSTGRES_DB: run_go_tests_race
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_USER: postgres
POSTGRES_USER: postgres
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_PASSWORD: $POSTGRES_PASSWORD
POSTGRES_PASSWORD: $POSTGRES_PASSWORD
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_HOST: postgres
services:
- postgres:14.7
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
needs: ["smoke build"] # we do block on smoke build though bc it's pretty dumb to test stuff if it doesn't build
script:
- echo "Running featurebase race tests..."
- PKG_LIST=$(go list ./... | grep -Ev 'internal/clustertests|simulacraData|batch|idk|v3/dax/test/dax' | paste -s -d, -)
- export TMPDIR=/mnt/ramdisk/test-$CI_JOB_ID
- mkdir -p $TMPDIR
- go test -race -v -timeout=10m ${PKG_LIST//,/ }
after_script:
- rm -rf /mnt/ramdisk/test-$CI_JOB_ID
tags:
- docker
# We run our base tests against $GOVERSION (a reasonably current version that we trust)
# and use shardwidth22 for them. This gives us a canary for things breaking for
# unusual shard widths.
run go tests:
stage: test
image: golang:$GOVERSION
extends: .go-cache
variables:
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_DATABASE: run_go_tests
POSTGRES_DB: run_go_tests
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_USER: postgres
POSTGRES_USER: postgres
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_PASSWORD: $POSTGRES_PASSWORD
POSTGRES_PASSWORD: $POSTGRES_PASSWORD
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_HOST: postgres
services:
- postgres:14.7
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- echo "Running featurebase unit tests..."
- PKG_LIST=$(go list ./... | grep -Ev 'internal/clustertests|simulacraData|batch|idk|v3/dax/test/dax' | paste -s -d, -)
- export TMPDIR=/mnt/ramdisk/test-$CI_JOB_ID
- mkdir -p $TMPDIR
- go test -tags=shardwidth22 -timeout=10m -coverprofile=coverage.out -covermode=atomic -coverpkg=${PKG_LIST} ${PKG_LIST//,/ }
after_script:
- rm -rf /mnt/ramdisk/test-$CI_JOB_ID
artifacts:
paths:
- coverage.out
tags:
- docker
run go tests dax/test/dax:
stage: test
image: golang:$GOVERSION
extends: .go-cache
tags:
- docker
variables:
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_DATABASE: run_go_tests_dax
POSTGRES_DB: run_go_tests_dax
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_USER: postgres
POSTGRES_USER: postgres
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_PASSWORD: $POSTGRES_PASSWORD
POSTGRES_PASSWORD: $POSTGRES_PASSWORD
FEATUREBASE_CONTROLLER_CONFIG_SQLDB_HOST: postgres
services:
- postgres:14.7
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- echo "Building FB and Datagen docker images for DAX tests"
- PKG_LIST=$(go list ./... | grep -Ev 'internal/clustertests|simulacraData' | paste -s -d, -)
- export TMPDIR=/mnt/ramdisk/test-$CI_JOB_ID
- mkdir -p $TMPDIR
- go test -coverprofile=coverage-dax-integration.out -covermode=atomic -coverpkg=${PKG_LIST} -timeout=20m ./dax/test/dax
after_script:
- rm -rf /mnt/ramdisk/test-$CI_JOB_ID
artifacts:
paths:
- coverage-dax-integration.out
# idk tests
run go tests idk race:
variables:
PROJECT: race_${CI_CONCURRENT_ID}
stage: nonblocking
retry: 1
script:
- echo "Running test-all-race"
- cd ./idk/
- echo $PROJECT
- echo $CI_COMMIT_REF_SLUG
- BRANCH_NAME=${CI_COMMIT_REF_SLUG} IDK_FEATUREBASE_TAG=${CI_COMMIT_TAG} IDK_FEATUREBASE_HASH=${CI_COMMIT_SHA} make test-all-race
after_script:
- cd ./idk/
- make save-pilosa-logs
- make shutdown
artifacts:
paths:
- ./idk/testdata/*_coverage.out
tags:
- shell
- aws
needs:
- job: build amd container fb
run go tests idk shard transactional:
variables:
IDK_DEFAULT_SHARD_TRANSACTIONAL: 1
PROJECT: shardttrans_${CI_CONCURRENT_ID}
stage: nonblocking
retry: 1
script:
- echo "Running shard transactional tests"
- cd ./idk/
- echo $PROJECT
- echo $CI_COMMIT_REF_SLUG
- BRANCH_NAME=${CI_COMMIT_REF_SLUG} IDK_FEATUREBASE_TAG=${CI_COMMIT_TAG} IDK_FEATUREBASE_HASH=${CI_COMMIT_SHA} make test-all
after_script:
- cd ./idk/
- make save-pilosa-logs
- make shutdown
artifacts:
paths:
- ./idk/testdata/*_coverage.out
- ./idk/testdata/*_logs.txt
tags:
- shell
- aws
needs:
- job: build amd container fb
run go tests idk 533:
variables:
USERNAME: fb-idk-access
PROJECT: test533_${CI_CONCURRENT_ID}
stage: nonblocking
retry: 1
script:
- echo "Running confluent 5.3.3 test-all"
- cd ./idk/
- echo $PROJECT
- echo $CI_COMMIT_REF_SLUG
- CONFLUENT_VERSION=5.3.3 BRANCH_NAME=${CI_COMMIT_REF_SLUG} IDK_FEATUREBASE_TAG=${CI_COMMIT_TAG} IDK_FEATUREBASE_HASH=${CI_COMMIT_SHA} make test-all
after_script:
- cd ./idk/
- make save-pilosa-logs
- make shutdown
tags:
- shell
- aws
artifacts:
paths:
- ./idk/testdata/*_coverage.out
needs:
- job: build amd container fb
run go tests idk sasl:
variables:
PROJECT: sasl_${CI_CONCURRENT_ID}
stage: nonblocking
retry: 1
script:
- echo "Running test-all-kafka-sasl"
- cd ./idk/
- echo $PROJECT
- echo $CI_COMMIT_REF_SLUG
- BRANCH_NAME=${CI_COMMIT_REF_SLUG} IDK_FEATUREBASE_TAG=${CI_COMMIT_TAG} IDK_FEATUREBASE_HASH=${CI_COMMIT_SHA} make test-all-kafka-sasl
after_script:
- cd ./idk/
- make save-pilosa-logs
- make shutdown
tags:
- shell
- aws
artifacts:
paths:
- ./idk/testdata/*_coverage.out
needs:
- job: build amd container fb
upload to sonarcloud:
stage: nonblocking
image: sonarsource/sonar-scanner-cli:4.7
variables:
SONAR_TOKEN: $SONAR_TOKEN
rules:
- if: '$CI_COMMIT_TAG == null && ($CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web")'
script:
- sonar-scanner -Dsonar.projectKey=molecula_featurebase -Dsonar.organization=molecula -Dsonar.sources=. -Dsonar.host.url=https://sonarcloud.io -Dsonar.go.coverage.reportPaths=coverage*.out,results/coverage*out,idk/testdata/*coverage.out,batch/testdata/*coverage.out,coverage-from-docker/*.out -Dsonar.javascript.lcov.reportPaths=lattice/coverage/lcov.info
needs:
- job: run go tests
- job: run jest tests
- job: external lookup tests
- job: run go tests idk race
optional: true
- job: run go tests idk shard transactional
optional: true
- job: run go tests idk sasl
optional: true
- job: run go tests idk 533
optional: true
- job: run go tests batch
optional: true
- job: run go tests dax/test/dax
optional: true
package for linux amd64:
stage: build
image: golang:$GOVERSION
extends: .go-cache
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
variables:
GOOS: "linux"
GOARCH: "amd64"
script:
- echo 'deb [trusted=yes] https://repo.goreleaser.com/apt/ /' | tee /etc/apt/sources.list.d/goreleaser.list
- apt update && apt install nfpm=2.11.3
- make package
artifacts:
paths:
- "*.deb"
- "*.rpm"
upload_artifacts_to_nexus:
stage: post build
image: golang:$GOVERSION
rules:
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
script:
- curl -v --user "$NEXUS_YUM_CREDS" --upload-file *.arm64.rpm https://nexus.molecula.com/repository/molecula-yum/release/
- curl -v --user "$NEXUS_YUM_CREDS" --upload-file *.amd64.rpm https://nexus.molecula.com/repository/molecula-yum/release/
dependencies:
- package for linux amd64
- package for linux arm64
trigger_m-cloud-images:
stage: post build
rules:
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
needs:
- upload_artifacts_to_nexus
trigger: molecula/m-cloud-images
package for linux arm64:
stage: build
image: golang:$GOVERSION
extends: .go-cache
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
variables:
GOOS: "linux"
GOARCH: "arm64"
script:
- echo 'deb [trusted=yes] https://repo.goreleaser.com/apt/ /' | tee /etc/apt/sources.list.d/goreleaser.list
- apt update && apt install nfpm=2.11.3
- make package
artifacts:
paths:
- "*.deb"
- "*.rpm"
build arm container fb:
stage: build
needs:
- "build featurebase"
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
before_script:
- echo "${DOCKER_DEPLOY_TOKEN}" | docker login -u ${DOCKER_DEPLOY_USER} --password-stdin ${CI_REGISTRY}
script:
- echo $CI_COMMIT_REF_SLUG
- tag=${CI_REGISTRY_IMAGE}/featurebase:linux-arm64-${CI_COMMIT_REF_SLUG}
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- docker build --build-arg GO_VERSION=$GOVERSION --build-arg ARCH=arm64 --build-arg SOURCE_DATE_EPOCH=$SOURCE_DATE_EPOCH -t $tag -f .gitlab/Dockerfile .
- docker push $tag
- echo Created docker featurebase image with tag "$tag"
### start idk builds ###
# building them all serially because otherwise you get container name conflicts.
idk build_amd64:
stage: build
variables:
BUILD_NAME: build_${CI_COMMIT_SHA}_${CI_CONCURRENT_ID}
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- cd ./idk/
- date
- make docker-build GOOS="linux" GOARCH="amd64" BUILD_CGO=1
- date
- make docker-build GOOS="darwin" GOARCH="amd64"
- date
artifacts:
paths:
- ./idk/build/*
needs:
# doesn't actually need this... just want it to start executing before *all* the tests finish
- job: run go tests
idk build_arm64:
stage: build
tags:
- shell-arm64
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- cd ./idk/
- date
- make docker-build GOOS="linux" GOARCH="arm64" BUILD_CGO=1 BUILD_NAME="linux-arm64"
- date
- make docker-build GOOS="darwin" GOARCH="arm64"
- date
artifacts:
paths:
- ./idk/build/*
needs:
# doesn't actually need this... just want it to start executing before *all* the tests finish
- job: run go tests
# building them all serially because otherwise you get container name conflicts.
# only do containers on default branch
idk package_docker_all:
stage: build
tags:
- shell
rules:
- if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH && ($CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web")'
script:
- export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct)
- make docker-idk GOOS="linux" GOARCH="amd64"
- docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY
- make docker-idk-tag-push GOOS="linux" GOARCH="amd64"
needs:
- job: idk build_amd64
- job: idk build_arm64
idk s3 dump:
stage: post build
allow_failure: false
variables:
PROFILE: "service-fb-ci"
AWS_SSH_PRIVATE_KEY: $AWS_FBCI_SSH_KEY
AWS_ACCESS_KEY_ID: $AWS_FBCI_ACCESS_KEY_ID
AWS_SECRET_ACCESS_KEY: $AWS_FBCI_SECRET_ACCESS_KEY
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web"'
script:
- aws configure set aws_access_key_id $AWS_FBCI_ACCESS_KEY_ID
- aws configure set aws_secret_access_key $AWS_FBCI_SECRET_ACCESS_KEY
- aws configure set region "us-east-2"
- aws configure set aws_profile $PROFILE
- aws s3 cp ./idk/build/ s3://molecula-artifact-storage/idk/${CI_COMMIT_BRANCH}/${CI_COMMIT_SHORT_SHA}/ --recursive
- aws s3 cp ./idk/build/ s3://molecula-artifact-storage/idk/${CI_COMMIT_BRANCH}/_latest/ --recursive
needs:
- job: idk build_amd64
- job: idk build_arm64
idk s3 dump tag:
stage: post build
variables:
PROFILE: "service-fb-ci"
AWS_SSH_PRIVATE_KEY: $AWS_FBCI_SSH_KEY
AWS_ACCESS_KEY_ID: $AWS_FBCI_ACCESS_KEY_ID
AWS_SECRET_ACCESS_KEY: $AWS_FBCI_SECRET_ACCESS_KEY
LOCATION: molecula-artifact-storage/idk/_tags
tags:
- shell
rules:
- if: '$CI_COMMIT_TAG != null && ($CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "schedule" || $CI_PIPELINE_SOURCE == "web")'
script:
- aws configure set aws_access_key_id $AWS_FBCI_ACCESS_KEY_ID
- aws configure set aws_secret_access_key $AWS_FBCI_SECRET_ACCESS_KEY
- aws configure set region "us-east-2"
- aws configure set aws_profile $PROFILE
- |
for goos in "darwin" "linux"; do
for goarch in "amd64" "arm64"; do
dir=idk-${CI_COMMIT_TAG}-${goos}-${goarch}
echo "Directory ${dir}"
mkdir ${dir}
mv ./idk/build/idk-${goos}-${goarch}/molecula-consumer-* ${dir}/
tar cvzf ${dir}.tar.gz ${dir}
aws s3 cp ${dir} s3://${LOCATION}/${CI_COMMIT_TAG}/${dir}/ --recursive
aws s3 cp ${dir}.tar.gz s3://${LOCATION}/${CI_COMMIT_TAG}/
done
done
needs:
- job: idk build_amd64
- job: idk build_arm64
### end idk builds ###
external lookup tests:
stage: integration
image: golang:$GOVERSION
extends: .go-cache
# TODO: no rules here, do we need to add the rules line?
variables:
POSTGRES_DB: $POSTGRES_DB
POSTGRES_USER: $POSTGRES_USER
POSTGRES_PASSWORD: $POSTGRES_PASSWORD
POSTGRES_HOST_AUTH_METHOD: trust
services:
- postgres:13.5
script:
- apt-get update --allow-releaseinfo-change -y
- apt-get install -y postgresql-client
- go test . -run "^TestExternalLookup" -externalLookupDSN postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@postgres/$POSTGRES_DB?sslmode=disable
s3 dump:
stage: post build
variables:
PROFILE: "service-fb-ci"
AWS_SSH_PRIVATE_KEY: $AWS_FBCI_SSH_KEY
AWS_ACCESS_KEY_ID: $AWS_FBCI_ACCESS_KEY_ID
AWS_SECRET_ACCESS_KEY: $AWS_FBCI_SECRET_ACCESS_KEY
tags:
- shell
rules:
- if: '$CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "web"'
script:
- aws configure set aws_access_key_id $AWS_FBCI_ACCESS_KEY_ID
- aws configure set aws_secret_access_key $AWS_FBCI_SECRET_ACCESS_KEY
- aws configure set region "us-east-2"
- aws configure set aws_profile $PROFILE
- |
for goos in "darwin" "linux"; do
for goarch in "amd64" "arm64"; do
aws s3 cp featurebase_${goos}_${goarch} s3://molecula-artifact-storage/featurebase/${CI_COMMIT_BRANCH}/${CI_COMMIT_SHORT_SHA}/featurebase_${goos}_${goarch}
aws s3 cp featurebase_${goos}_${goarch} s3://molecula-artifact-storage/featurebase/${CI_COMMIT_BRANCH}/_latest/featurebase_${goos}_${goarch}
aws s3 cp ./build/fbsql_${goos}_${goarch} s3://molecula-artifact-storage/featurebase/${CI_COMMIT_BRANCH}/${CI_COMMIT_SHORT_SHA}/fbsql_${goos}_${goarch}
aws s3 cp ./build/fbsql_${goos}_${goarch} s3://molecula-artifact-storage/featurebase/${CI_COMMIT_BRANCH}/_latest/fbsql_${goos}_${goarch}
done
done
needs:
- job: build featurebase
- job: build fbsql amd64
- job: build fbsql arm64
s3 dump tag:
stage: post build
variables:
PROFILE: "service-fb-ci"
AWS_SSH_PRIVATE_KEY: $AWS_FBCI_SSH_KEY
AWS_ACCESS_KEY_ID: $AWS_FBCI_ACCESS_KEY_ID
AWS_SECRET_ACCESS_KEY: $AWS_FBCI_SECRET_ACCESS_KEY
LOCATION: molecula-artifact-storage/featurebase/_tags
tags:
- shell
rules:
- if: '$CI_COMMIT_TAG != null && ($CI_PIPELINE_SOURCE == "push" || $CI_PIPELINE_SOURCE == "web")'
script:
- aws configure set aws_access_key_id $AWS_FBCI_ACCESS_KEY_ID
- aws configure set aws_secret_access_key $AWS_FBCI_SECRET_ACCESS_KEY
- aws configure set region "us-east-2"
- aws configure set aws_profile $PROFILE
- |
for goos in "darwin" "linux"; do
for goarch in "amd64" "arm64"; do
dir=featurebase-${CI_COMMIT_TAG}-${goos}-${goarch}
echo "Directory ${dir}"
mkdir $dir
mv featurebase_${goos}_${goarch} ${dir}/featurebase
mv ./build/fbsql_${goos}_${goarch} ${dir}/fbsql
cp NOTICE install/featurebase.conf install/featurebase.*.service ${dir}/
tar cvzf ${dir}.tar.gz ${dir}
aws s3 cp ${dir} s3://${LOCATION}/${CI_COMMIT_TAG}/${dir}/ --recursive
aws s3 cp ${dir}.tar.gz s3://${LOCATION}/${CI_COMMIT_TAG}/
done
done
needs:
- job: build featurebase
- job: build fbsql amd64
- job: build fbsql arm64

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@ -1,24 +0,0 @@
FROM alpine:3.14.2
LABEL maintainer "dev@molecula.com"
LABEL org.opencontainers.image.authors="dev@molecula.com"
ARG ARCH
WORKDIR /
RUN apk add --no-cache curl jq
COPY NOTICE .
COPY featurebase_linux_$ARCH featurebase
RUN chmod ugo+x .
EXPOSE 10101
VOLUME /data
ENV PILOSA_DATA_DIR /data
ENV PILOSA_BIND 0.0.0.0:10101
ENV PILOSA_BIND_GRPC 0.0.0.0:20101
ENTRYPOINT ["/featurebase"]
CMD ["server"]

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@ -1,28 +0,0 @@
run go tests batch:
variables:
PROJECT: batch_${CI_CONCURRENT_ID}
# this test relies on stuff that happens after build-lattice, which
# makes it pause the entire CI run waiting for this. we accept the
# small risk of wasting a build against the near certainty of spending
# five minutes running only one job.
stage: nonblocking
retry: 1
script:
- echo "Running test-all"
- cd ./batch/
- echo $PROJECT
- make build-featurebase
- make test-all
after_script:
- cd ./batch/
- make save-featurebase-logs
- make shutdown
artifacts:
paths:
- ./batch/testdata/*_coverage.out
- ./batch/testdata/*_logs.txt
tags:
- shell
- aws
needs:
- job: build amd container fb

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@ -1,83 +0,0 @@
run:
deadline: 5m
timeout: 5m
skip-dirs-use-default: true
#skip the protobuf generated files
skip-dirs:
- pb
- proto
skip-files:
- pql/pql.peg.go
linters:
enable:
# Recommended to be enabled by default (https://golangci-lint.run).
# - errcheck (lots to fix)
- gosimple
- govet
- ineffassign
- staticcheck
- typecheck
# - unused (about 20 to fix)
# Additional linters we choose to enable.
# - bodyclose (lots to fix, but we should)
- errchkjson
- errname
- gofmt
# - misspell (lots to fix, but we should)
- prealloc
# - predeclared (20 to fix)
# - stylecheck (quite a lot to fix, but we should definitely work on this)
- stylecheck
# - unconvert (not at all critical, but makes for cleaner code)
enable-all: false
disable-all: true
output:
# colored-line-number|line-number|json|tab|checkstyle|code-climate, default is "colored-line-number"
format: tab
# print lines of code with issue, default is true
print-issued-lines: true
# print linter name in the end of issue text, default is true
print-linter-name: true
linters-settings:
gofmt:
simplify: true
govet:
# report about shadowed variables
check-shadowing: true
# settings per analyzer
settings:
printf: # analyzer name, run `go tool vet help` to see all analyzers
funcs: # run `go tool vet help printf` to see available settings for `printf` analyzer
- (github.com/golangci/golangci-lint/pkg/logutils.Log).Infof
- (github.com/golangci/golangci-lint/pkg/logutils.Log).Warnf
- (github.com/golangci/golangci-lint/pkg/logutils.Log).Errorf
- (github.com/golangci/golangci-lint/pkg/logutils.Log).Fatalf
# enable or disable analyzers by name
# run `go tool vet help` to see all analyzers
enable:
- atomicalign
enable-all: false
disable:
- shadow
disable-all: false
stylecheck:
# ST1000: at least one file in a package should have a package comment
# ST1003: golang naming standards
# ST1016: methods on the same type should have the same receiver name
# ST1020: comment on exported function
checks: ["all", "-ST1000", "-ST1003", "-ST1016", "-ST1020"]
issues:
exclude-use-default: false
max-issues-per-linter: 0
max-same-issues: 0
exclude:
- 'declaration of "(err|ctx)" shadows declaration at'
- 'Error return value of .(.*\.Help|.*\.MarkFlagRequired|(os\.)?std(out|err)\..*|.*Close|.*Flush|os\.Remove(All)?|.*printf?|os\.(Un)?Setenv). is not checked'

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@ -1,133 +0,0 @@
# Contributor Covenant Code of Conduct
## Our Pledge
We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, caste, color, religion, or sexual
identity and orientation.
We pledge to act and interact in ways that contribute to an open, welcoming,
diverse, inclusive, and healthy community.
## Our Standards
Examples of behavior that contributes to a positive environment for our
community include:
* Demonstrating empathy and kindness toward other people
* Being respectful of differing opinions, viewpoints, and experiences
* Giving and gracefully accepting constructive feedback
* Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
* Focusing on what is best not just for us as individuals, but for the overall
community
Examples of unacceptable behavior include:
* The use of sexualized language or imagery, and sexual attention or advances of
any kind
* Trolling, insulting or derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or email address,
without their explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting
## Enforcement Responsibilities
Community leaders are responsible for clarifying and enforcing our standards of
acceptable behavior and will take appropriate and fair corrective action in
response to any behavior that they deem inappropriate, threatening, offensive,
or harmful.
Community leaders have the right and responsibility to remove, edit, or reject
comments, commits, code, wiki edits, issues, and other contributions that are
not aligned to this Code of Conduct, and will communicate reasons for moderation
decisions when appropriate.
## Scope
This Code of Conduct applies within all community spaces, and also applies when
an individual is officially representing the community in public spaces.
Examples of representing our community include using an official e-mail address,
posting via an official social media account, or acting as an appointed
representative at an online or offline event.
## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to the community leaders responsible for enforcement at
community@featurebase.com.
All complaints will be reviewed and investigated promptly and fairly.
All community leaders are obligated to respect the privacy and security of the
reporter of any incident.
## Enforcement Guidelines
Community leaders will follow these Community Impact Guidelines in determining
the consequences for any action they deem in violation of this Code of Conduct:
### 1. Correction
**Community Impact**: Use of inappropriate language or other behavior deemed
unprofessional or unwelcome in the community.
**Consequence**: A private, written warning from community leaders, providing
clarity around the nature of the violation and an explanation of why the
behavior was inappropriate. A public apology may be requested.
### 2. Warning
**Community Impact**: A violation through a single incident or series of
actions.
**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or permanent
ban.
### 3. Temporary Ban
**Community Impact**: A serious violation of community standards, including
sustained inappropriate behavior.
**Consequence**: A temporary ban from any sort of interaction or public
communication with the community for a specified period of time. No public or
private interaction with the people involved, including unsolicited interaction
with those enforcing the Code of Conduct, is allowed during this period.
Violating these terms may lead to a permanent ban.
### 4. Permanent Ban
**Community Impact**: Demonstrating a pattern of violation of community
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.
**Consequence**: A permanent ban from any sort of public interaction within the
community.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.1, available at
[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
Community Impact Guidelines were inspired by
[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
For answers to common questions about this code of conduct, see the FAQ at
[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
[https://www.contributor-covenant.org/translations][translations].
[homepage]: https://www.contributor-covenant.org
[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
[Mozilla CoC]: https://github.com/mozilla/diversity
[FAQ]: https://www.contributor-covenant.org/faq
[translations]: https://www.contributor-covenant.org/translations

View file

@ -1,58 +0,0 @@
ARG GO_VERSION=latest
#######################
### Lattice builder ###
#######################
FROM ghcr.io/featurebasedb/nodejs:0.0.1 as lattice-builder
WORKDIR /lattice
COPY lattice/package.json ./
COPY lattice/yarn.lock ./
RUN yarn install
COPY lattice ./
RUN yarn build
######################
### Pilosa builder ###
######################
FROM golang:${GO_VERSION} as pilosa-builder
ARG MAKE_FLAGS
ARG SOURCE_DATE_EPOCH
WORKDIR /pilosa
RUN go install github.com/rakyll/statik@v0.1.7
COPY . ./
COPY --from=lattice-builder /lattice/build /lattice
RUN /go/bin/statik -src=/lattice -dest=/pilosa
ENV SOURCE_DATE_EPOCH=${SOURCE_DATE_EPOCH}
RUN make build FLAGS="-o build/featurebase" ${MAKE_FLAGS}
#####################
### Pilosa runner ###
#####################
FROM alpine:3.13.2 as runner
LABEL maintainer "dev@molecula.com"
RUN apk add --no-cache curl jq tree
COPY --from=pilosa-builder /pilosa/build/featurebase /
COPY NOTICE /NOTICE
EXPOSE 10101
VOLUME /data
ENV PILOSA_DATA_DIR /data
ENV PILOSA_BIND 0.0.0.0:10101
ENV PILOSA_BIND_GRPC 0.0.0.0:20101
ENTRYPOINT ["/featurebase"]
CMD ["server"]

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@ -1,38 +0,0 @@
# This Dockerfile is used for cluster testing - it produces a much larger image
# and includes all of Go as well as some utilities.
FROM golang:1.19
LABEL maintainer "dev@pilosa.com"
COPY . /go/src/github.com/featurebasedb/featurebase/
# download pumba for fault injection
ADD https://github.com/alexei-led/pumba/releases/download/0.6.0/pumba_linux_amd64 /pumba
RUN chmod +x /pumba
# add docker client to pause/unpause nodes
RUN apt update
RUN apt install -y docker.io
# add docker-compose so tests can use it for stuff
ADD https://github.com/docker/compose/releases/latest/download/docker-compose-Linux-x86_64 /usr/local/bin/docker-compose
RUN chmod +x /usr/local/bin/docker-compose
WORKDIR /go/src/github.com/featurebasedb/featurebase/cmd/featurebase
# generate an instrumented binary to allow for calculating code coverage for clustertests
# the entrypoint for the binary is TestRunMain, which is wrapper for main
RUN go test -covermode=atomic -coverpkg=../../... -c -tags testrunmain -o featurebase
RUN cp /go/src/github.com/featurebasedb/featurebase/cmd/featurebase/featurebase /featurebase
COPY NOTICE /NOTICE
EXPOSE 10101
VOLUME /data
# use e.g. "-test.coverprofile=/results/coverage.out"
CMD ["/featurebase", "-test.run=TestRunMain", "server"]

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@ -1,37 +0,0 @@
# This Dockerfile is used for cluster testing - it produces a much larger image
# and includes all of Go as well as some utilities.
FROM golang:1.19
LABEL maintainer "dev@pilosa.com"
COPY . /go/src/github.com/featurebasedb/featurebase/
# download pumba for fault injection
ADD https://github.com/alexei-led/pumba/releases/download/0.6.0/pumba_linux_amd64 /pumba
RUN chmod +x /pumba
# add docker client to pause/unpause nodes
RUN apt update
RUN apt install -y docker.io
# add docker-compose so tests can use it for stuff
ADD https://github.com/docker/compose/releases/latest/download/docker-compose-Linux-x86_64 /usr/local/bin/docker-compose
RUN chmod +x /usr/local/bin/docker-compose
WORKDIR /go/src/github.com/featurebasedb/featurebase/cmd/featurebase
RUN go test -covermode=atomic -coverpkg=../../... -c -tags testrunmain -o featurebase
RUN cp /go/src/github.com/featurebasedb/featurebase/cmd/featurebase/featurebase /featurebase
COPY NOTICE /NOTICE
COPY ./internal/clustertests /go/src/github.com/featurebasedb/featurebase/internal/clustertests
EXPOSE 10101
VOLUME /data
WORKDIR /go/src/github.com/featurebasedb/featurebase
CMD ["/featurebase", "-test.run=TestRunMain", "-test.coverprofile=/results/coverage.out", "server", "--data-dir", "/data", "--bind", "http://0.0.0.0:10101"]

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@ -1,47 +0,0 @@
# syntax=docker/dockerfile:1
##########################
### datagen builder ###
##########################
FROM golang:alpine as builder
WORKDIR /featurebase
COPY . ./
RUN apk add --no-cache build-base bash git make librdkafka pkgconfig
# install librdkafka
RUN git clone https://github.com/edenhill/librdkafka.git
RUN cd librdkafka && ./configure --prefix /usr && make && make install
ENV PKG_CONFIG_PATH=/usr/lib/pkgconfig/
RUN cd idk && make build-datagen
# ENTRYPOINT ["tail", "-f", "/dev/null"]
#########################
### datagen runner ###
#########################
FROM alpine:3.15.3 as runner
WORKDIR /
LABEL maintainer "dev@molecula.com"
RUN apk add --no-cache curl jq
COPY --from=builder /featurebase/idk/build/datagen /bin/
COPY --from=builder /usr/lib/librdkafka* /usr/lib/
COPY idk/datagen/testdata/* /testdata/
EXPOSE 8080
# VOLUME /data
# ENV ADDR 0.0.0.0:8080
#ENTRYPOINT ["sleep", "infinity"]
ENTRYPOINT ["datagen"]

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@ -1,32 +0,0 @@
ARG GO_VERSION=latest
###########################
### FeatureBase Builder ###
###########################
FROM golang:${GO_VERSION} as featurebase-builder
ARG MAKE_FLAGS
WORKDIR /fb
COPY . ./
RUN make build FLAGS="-o build/featurebase" ${MAKE_FLAGS}
##########################
### FeatureBase runner ###
##########################
FROM golang:alpine as runner
LABEL maintainer "dev@featurebase.com"
RUN apk add --no-cache curl jq tree
COPY --from=featurebase-builder /fb/build/featurebase /
COPY NOTICE /NOTICE
EXPOSE 8080
ENTRYPOINT ["/featurebase"]
CMD ["dax"]

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@ -1,18 +0,0 @@
ARG GO_VERSION=latest
##########################
### FeatureBase runner ###
##########################
FROM alpine:3.13.2 as runner
LABEL maintainer "dev@featurebase.com"
RUN apk add --no-cache curl jq tree
COPY ./fb_linux /featurebase
EXPOSE 8080
ENTRYPOINT ["/featurebase"]
CMD ["dax"]

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@ -1,48 +0,0 @@
ARG GO_VERSION=1.19
FROM golang:1.19-buster as builder
WORKDIR /
RUN apt-get update -y -qq && apt-get install -y -qq \
build-essential \
git \
musl-tools \
netcat \
unixodbc \
unixodbc-dev \
&& rm -rf /var/lib/apt/lists/*
RUN ["git", "clone", "https://github.com/edenhill/librdkafka.git"]
WORKDIR /librdkafka
RUN ./configure --prefix /usr && \
make && \
make install
WORKDIR /featurebase
COPY . .
ARG MAKE_FLAGS
ARG GO_BUILD_FLAGS
ARG SOURCE_DATE_EPOCH
WORKDIR /featurebase/
ENV SOURCE_DATE_EPOCH=${SOURCE_DATE_EPOCH}
RUN make build-fbsql GO_BUILD_FLAGS="-mod=vendor ${GO_BUILD_FLAGS}" ${MAKE_FLAGS}
FROM ubuntu:20.04 as runner
RUN apt-get update -y -qq && apt-get install -y -qq \
ca-certificates \
musl-tools \
netcat \
unixodbc-dev \
&& rm -rf /var/lib/apt/lists/*
COPY --from=builder /featurebase/fbsql /usr/local/bin/
# Verify that the linker can find everything.
FROM runner as linkcheck
RUN if [ -e /usr/local/bin/fbsql ] ; then ldd /usr/local/bin/fbsql; fi
FROM runner

201
LICENSE
View file

@ -1,201 +0,0 @@
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
and distribution as defined by Sections 1 through 9 of this document.
"Licensor" shall mean the copyright owner or entity authorized by
the copyright owner that is granting the License.
"Legal Entity" shall mean the union of the acting entity and all
other entities that control, are controlled by, or are under common
control with that entity. For the purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the
direction or management of such entity, whether by contract or
otherwise, or (ii) ownership of fifty percent (50%) or more of the
outstanding shares, or (iii) beneficial ownership of such entity.
"You" (or "Your") shall mean an individual or Legal Entity
exercising permissions granted by this License.
"Source" form shall mean the preferred form for making modifications,
including but not limited to software source code, documentation
source, and configuration files.
"Object" form shall mean any form resulting from mechanical
transformation or translation of a Source form, including but
not limited to compiled object code, generated documentation,
and conversions to other media types.
"Work" shall mean the work of authorship, whether in Source or
Object form, made available under the License, as indicated by a
copyright notice that is included in or attached to the work
(an example is provided in the Appendix below).
"Derivative Works" shall mean any work, whether in Source or Object
form, that is based on (or derived from) the Work and for which the
editorial revisions, annotations, elaborations, or other modifications
represent, as a whole, an original work of authorship. For the purposes
of this License, Derivative Works shall not include works that remain
separable from, or merely link (or bind by name) to the interfaces of,
the Work and Derivative Works thereof.
"Contribution" shall mean any work of authorship, including
the original version of the Work and any modifications or additions
to that Work or Derivative Works thereof, that is intentionally
submitted to Licensor for inclusion in the Work by the copyright owner
or by an individual or Legal Entity authorized to submit on behalf of
the copyright owner. For the purposes of this definition, "submitted"
means any form of electronic, verbal, or written communication sent
to the Licensor or its representatives, including but not limited to
communication on electronic mailing lists, source code control systems,
and issue tracking systems that are managed by, or on behalf of, the
Licensor for the purpose of discussing and improving the Work, but
excluding communication that is conspicuously marked or otherwise
designated in writing by the copyright owner as "Not a Contribution."
"Contributor" shall mean Licensor and any individual or Legal Entity
on behalf of whom a Contribution has been received by Licensor and
subsequently incorporated within the Work.
2. Grant of Copyright License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
copyright license to reproduce, prepare Derivative Works of,
publicly display, publicly perform, sublicense, and distribute the
Work and such Derivative Works in Source or Object form.
3. Grant of Patent License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
(except as stated in this section) patent license to make, have made,
use, offer to sell, sell, import, and otherwise transfer the Work,
where such license applies only to those patent claims licensable
by such Contributor that are necessarily infringed by their
Contribution(s) alone or by combination of their Contribution(s)
with the Work to which such Contribution(s) was submitted. If You
institute patent litigation against any entity (including a
cross-claim or counterclaim in a lawsuit) alleging that the Work
or a Contribution incorporated within the Work constitutes direct
or contributory patent infringement, then any patent licenses
granted to You under this License for that Work shall terminate
as of the date such litigation is filed.
4. Redistribution. You may reproduce and distribute copies of the
Work or Derivative Works thereof in any medium, with or without
modifications, and in Source or Object form, provided that You
meet the following conditions:
(a) You must give any other recipients of the Work or
Derivative Works a copy of this License; and
(b) You must cause any modified files to carry prominent notices
stating that You changed the files; and
(c) You must retain, in the Source form of any Derivative Works
that You distribute, all copyright, patent, trademark, and
attribution notices from the Source form of the Work,
excluding those notices that do not pertain to any part of
the Derivative Works; and
(d) If the Work includes a "NOTICE" text file as part of its
distribution, then any Derivative Works that You distribute must
include a readable copy of the attribution notices contained
within such NOTICE file, excluding those notices that do not
pertain to any part of the Derivative Works, in at least one
of the following places: within a NOTICE text file distributed
as part of the Derivative Works; within the Source form or
documentation, if provided along with the Derivative Works; or,
within a display generated by the Derivative Works, if and
wherever such third-party notices normally appear. The contents
of the NOTICE file are for informational purposes only and
do not modify the License. You may add Your own attribution
notices within Derivative Works that You distribute, alongside
or as an addendum to the NOTICE text from the Work, provided
that such additional attribution notices cannot be construed
as modifying the License.
You may add Your own copyright statement to Your modifications and
may provide additional or different license terms and conditions
for use, reproduction, or distribution of Your modifications, or
for any such Derivative Works as a whole, provided Your use,
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.
5. Submission of Contributions. Unless You explicitly state otherwise,
any Contribution intentionally submitted for inclusion in the Work
by You to the Licensor shall be under the terms and conditions of
this License, without any additional terms or conditions.
Notwithstanding the above, nothing herein shall supersede or modify
the terms of any separate license agreement you may have executed
with Licensor regarding such Contributions.
6. Trademarks. This License does not grant permission to use the trade
names, trademarks, service marks, or product names of the Licensor,
except as required for reasonable and customary use in describing the
origin of the Work and reproducing the content of the NOTICE file.
7. Disclaimer of Warranty. Unless required by applicable law or
agreed to in writing, Licensor provides the Work (and each
Contributor provides its Contributions) on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
implied, including, without limitation, any warranties or conditions
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
PARTICULAR PURPOSE. You are solely responsible for determining the
appropriateness of using or redistributing the Work and assume any
risks associated with Your exercise of permissions under this License.
8. Limitation of Liability. In no event and under no legal theory,
whether in tort (including negligence), contract, or otherwise,
unless required by applicable law (such as deliberate and grossly
negligent acts) or agreed to in writing, shall any Contributor be
liable to You for damages, including any direct, indirect, special,
incidental, or consequential damages of any character arising as a
result of this License or out of the use or inability to use the
Work (including but not limited to damages for loss of goodwill,
work stoppage, computer failure or malfunction, or any and all
other commercial damages or losses), even if such Contributor
has been advised of the possibility of such damages.
9. Accepting Warranty or Additional Liability. While redistributing
the Work or Derivative Works thereof, You may choose to offer,
and charge a fee for, acceptance of support, warranty, indemnity,
or other liability obligations and/or rights consistent with this
License. However, in accepting such obligations, You may act only
on Your own behalf and on Your sole responsibility, not on behalf
of any other Contributor, and only if You agree to indemnify,
defend, and hold each Contributor harmless for any liability
incurred by, or claims asserted against, such Contributor by reason
of your accepting any such warranty or additional liability.
END OF TERMS AND CONDITIONS
APPENDIX: How to apply the Apache License to your work.
To apply the Apache License to your work, attach the following
boilerplate notice, with the fields enclosed by brackets "[]"
replaced with your own identifying information. (Don't include
the brackets!) The text should be enclosed in the appropriate
comment syntax for the file format. We also recommend that a
file or class name and description of purpose be included on the
same "printed page" as the copyright notice for easier
identification within third-party archives.
Copyright 2023 Molecula Corp. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

View file

@ -1,202 +0,0 @@
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
and distribution as defined by Sections 1 through 9 of this document.
"Licensor" shall mean the copyright owner or entity authorized by
the copyright owner that is granting the License.
"Legal Entity" shall mean the union of the acting entity and all
other entities that control, are controlled by, or are under common
control with that entity. For the purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the
direction or management of such entity, whether by contract or
otherwise, or (ii) ownership of fifty percent (50%) or more of the
outstanding shares, or (iii) beneficial ownership of such entity.
"You" (or "Your") shall mean an individual or Legal Entity
exercising permissions granted by this License.
"Source" form shall mean the preferred form for making modifications,
including but not limited to software source code, documentation
source, and configuration files.
"Object" form shall mean any form resulting from mechanical
transformation or translation of a Source form, including but
not limited to compiled object code, generated documentation,
and conversions to other media types.
"Work" shall mean the work of authorship, whether in Source or
Object form, made available under the License, as indicated by a
copyright notice that is included in or attached to the work
(an example is provided in the Appendix below).
"Derivative Works" shall mean any work, whether in Source or Object
form, that is based on (or derived from) the Work and for which the
editorial revisions, annotations, elaborations, or other modifications
represent, as a whole, an original work of authorship. For the purposes
of this License, Derivative Works shall not include works that remain
separable from, or merely link (or bind by name) to the interfaces of,
the Work and Derivative Works thereof.
"Contribution" shall mean any work of authorship, including
the original version of the Work and any modifications or additions
to that Work or Derivative Works thereof, that is intentionally
submitted to Licensor for inclusion in the Work by the copyright owner
or by an individual or Legal Entity authorized to submit on behalf of
the copyright owner. For the purposes of this definition, "submitted"
means any form of electronic, verbal, or written communication sent
to the Licensor or its representatives, including but not limited to
communication on electronic mailing lists, source code control systems,
and issue tracking systems that are managed by, or on behalf of, the
Licensor for the purpose of discussing and improving the Work, but
excluding communication that is conspicuously marked or otherwise
designated in writing by the copyright owner as "Not a Contribution."
"Contributor" shall mean Licensor and any individual or Legal Entity
on behalf of whom a Contribution has been received by Licensor and
subsequently incorporated within the Work.
2. Grant of Copyright License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
copyright license to reproduce, prepare Derivative Works of,
publicly display, publicly perform, sublicense, and distribute the
Work and such Derivative Works in Source or Object form.
3. Grant of Patent License. Subject to the terms and conditions of
this License, each Contributor hereby grants to You a perpetual,
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
(except as stated in this section) patent license to make, have made,
use, offer to sell, sell, import, and otherwise transfer the Work,
where such license applies only to those patent claims licensable
by such Contributor that are necessarily infringed by their
Contribution(s) alone or by combination of their Contribution(s)
with the Work to which such Contribution(s) was submitted. If You
institute patent litigation against any entity (including a
cross-claim or counterclaim in a lawsuit) alleging that the Work
or a Contribution incorporated within the Work constitutes direct
or contributory patent infringement, then any patent licenses
granted to You under this License for that Work shall terminate
as of the date such litigation is filed.
4. Redistribution. You may reproduce and distribute copies of the
Work or Derivative Works thereof in any medium, with or without
modifications, and in Source or Object form, provided that You
meet the following conditions:
(a) You must give any other recipients of the Work or
Derivative Works a copy of this License; and
(b) You must cause any modified files to carry prominent notices
stating that You changed the files; and
(c) You must retain, in the Source form of any Derivative Works
that You distribute, all copyright, patent, trademark, and
attribution notices from the Source form of the Work,
excluding those notices that do not pertain to any part of
the Derivative Works; and
(d) If the Work includes a "NOTICE" text file as part of its
distribution, then any Derivative Works that You distribute must
include a readable copy of the attribution notices contained
within such NOTICE file, excluding those notices that do not
pertain to any part of the Derivative Works, in at least one
of the following places: within a NOTICE text file distributed
as part of the Derivative Works; within the Source form or
documentation, if provided along with the Derivative Works; or,
within a display generated by the Derivative Works, if and
wherever such third-party notices normally appear. The contents
of the NOTICE file are for informational purposes only and
do not modify the License. You may add Your own attribution
notices within Derivative Works that You distribute, alongside
or as an addendum to the NOTICE text from the Work, provided
that such additional attribution notices cannot be construed
as modifying the License.
You may add Your own copyright statement to Your modifications and
may provide additional or different license terms and conditions
for use, reproduction, or distribution of Your modifications, or
for any such Derivative Works as a whole, provided Your use,
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.
5. Submission of Contributions. Unless You explicitly state otherwise,
any Contribution intentionally submitted for inclusion in the Work
by You to the Licensor shall be under the terms and conditions of
this License, without any additional terms or conditions.
Notwithstanding the above, nothing herein shall supersede or modify
the terms of any separate license agreement you may have executed
with Licensor regarding such Contributions.
6. Trademarks. This License does not grant permission to use the trade
names, trademarks, service marks, or product names of the Licensor,
except as required for reasonable and customary use in describing the
origin of the Work and reproducing the content of the NOTICE file.
7. Disclaimer of Warranty. Unless required by applicable law or
agreed to in writing, Licensor provides the Work (and each
Contributor provides its Contributions) on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
implied, including, without limitation, any warranties or conditions
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
PARTICULAR PURPOSE. You are solely responsible for determining the
appropriateness of using or redistributing the Work and assume any
risks associated with Your exercise of permissions under this License.
8. Limitation of Liability. In no event and under no legal theory,
whether in tort (including negligence), contract, or otherwise,
unless required by applicable law (such as deliberate and grossly
negligent acts) or agreed to in writing, shall any Contributor be
liable to You for damages, including any direct, indirect, special,
incidental, or consequential damages of any character arising as a
result of this License or out of the use or inability to use the
Work (including but not limited to damages for loss of goodwill,
work stoppage, computer failure or malfunction, or any and all
other commercial damages or losses), even if such Contributor
has been advised of the possibility of such damages.
9. Accepting Warranty or Additional Liability. While redistributing
the Work or Derivative Works thereof, You may choose to offer,
and charge a fee for, acceptance of support, warranty, indemnity,
or other liability obligations and/or rights consistent with this
License. However, in accepting such obligations, You may act only
on Your own behalf and on Your sole responsibility, not on behalf
of any other Contributor, and only if You agree to indemnify,
defend, and hold each Contributor harmless for any liability
incurred by, or claims asserted against, such Contributor by reason
of your accepting any such warranty or additional liability.
END OF TERMS AND CONDITIONS
APPENDIX: How to apply the Apache License to your work.
To apply the Apache License to your work, attach the following
boilerplate notice, with the fields enclosed by brackets "[]"
replaced with your own identifying information. (Don't include
the brackets!) The text should be enclosed in the appropriate
comment syntax for the file format. We also recommend that a
file or class name and description of purpose be included on the
same "printed page" as the copyright notice for easier
identification within third-party archives.
Copyright [yyyy] [name of copyright owner]
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

408
Makefile
View file

@ -1,405 +1,7 @@
.PHONY: build clean build-lattice cover cover-viz default docker docker-build docker-build-fbsql docker-tag-push generate generate-protoc generate-pql generate-statik generate-stringer install install-protoc-gen-gofast install-protoc install-statik install-peg test docker-login
.PHONY: vendor
SHELL := /bin/bash
VERSION := $(shell git describe --tags 2> /dev/null || echo unknown)
VARIANT = Molecula
GO=go
GOOS=$(shell $(GO) env GOOS)
GOARCH=$(shell $(GO) env GOARCH)
VERSION_ID=$(if $(TRIAL_DEADLINE),trial-$(TRIAL_DEADLINE)-,)$(VERSION)-$(GOOS)-$(GOARCH)
DATE_FMT="+%FT%T%z"
# set SOURCE_DATE_EPOCH like this to use the last git commit timestamp
# export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) instead of the current time from running `date`
ifdef SOURCE_DATE_EPOCH
BUILD_TIME ?= $(shell date -u -d "@$(SOURCE_DATE_EPOCH)" "$(DATE_FMT)" 2>/dev/null || date -u -r "$(SOURCE_DATE_EPOCH)" "$(DATE_FMT)" 2>/dev/null || date -u "$(DATE_FMT)")
else
BUILD_TIME ?= $(shell date -u "$(DATE_FMT)")
endif
SHARD_WIDTH = 20
COMMIT := $(shell git describe --exact-match >/dev/null 2>&1 || git rev-parse --short HEAD)
LDFLAGS="-X github.com/featurebasedb/featurebase/v3.Version=$(VERSION) -X github.com/featurebasedb/featurebase/v3.BuildTime=$(BUILD_TIME) -X github.com/featurebasedb/featurebase/v3.Variant=$(VARIANT) -X github.com/featurebasedb/featurebase/v3.Commit=$(COMMIT) -X github.com/featurebasedb/featurebase/v3.TrialDeadline=$(TRIAL_DEADLINE)"
GO_VERSION=1.19
GO_BUILD_FLAGS=
DOCKER_BUILD= # set to 1 to use `docker-build` instead of `build` when creating a release
BUILD_TAGS +=
TEST_TAGS = roaringparanoia
TEST_TIMEOUT=10m
RACE_TEST_TIMEOUT=10m
# size in GB to use for ramdisk, ?= so you can override it with env
# 4GB is not enough for `make test`, 8GB usually is.
RAMDISK_SIZE ?= 8
export GO111MODULE=on
export GOPRIVATE=github.com/molecula
export CGO_ENABLED=0
AWS_ACCOUNTID ?= undefined
# Run tests and compile Pilosa
default: test build
# Remove build directories
clean:
rm -rf vendor build
rm -f *.rpm *.deb
# Set up vendor directory using `go mod vendor`
vendor: go.mod
$(GO) mod vendor
version:
@echo $(VERSION)
# We build a list of packages that omits the IDK and batch packages because
# those packages require fancy environment setup.
GOPACKAGES := $(shell $(GO) list ./... | grep -v "/v3/idk" | grep -v "/v3/batch")
# Run test suite
test:
$(GO) test $(GOPACKAGES) -tags='$(BUILD_TAGS) $(TEST_TAGS)' $(TESTFLAGS) -v -timeout $(TEST_TIMEOUT) -count=1
# Run test suite with race flag
test-race:
CGO_ENABLED=1 $(GO) test $(GOPACKAGES) -tags='$(BUILD_TAGS) $(TEST_TAGS)' $(TESTFLAGS) -race -timeout $(RACE_TEST_TIMEOUT) -v
testv: testvsub
testv-race: testvsub-race
# testvsub: run go test -v in sub-directories in "local mode" with incremental output,
# avoiding go -test ./... "package list mode" which doesn't give output
# until the test run finishes. Package list mode makes it hard to
# find which test is hung/deadlocked.
#
testvsub:
@set -e; for pkg in $(GOPACKAGES); do \
if [ $${pkg:0:38} == "github.com/featurebasedb/featurebase/v3/idk" ]; then \
echo; echo "___ skipping subpkg $$pkg"; \
continue; \
fi; \
echo; echo "___ testing subpkg $$pkg"; \
$(GO) test -tags='$(BUILD_TAGS) $(TEST_TAGS)' $(TESTFLAGS) -v -timeout $(RACE_TEST_TIMEOUT) $$pkg || break; \
echo; echo "999 done testing subpkg $$pkg"; \
done
# make a $(RAMDISK_SIZE)GB RAMDisk. Speed up tests by running
# them with TMPDIR=/mnt/ramdisk.
ramdisk-linux:
mount -o size=$(RAMDISK__SIZE)G -t tmpfs none /mnt/ramdisk
# make a $(RAMDISK_SIZE)GB RAMDisk. Speed up tests by running
# them with TMPDIR=/Volumes/RAMDisk. This is more important on
# OS X than it is on Linux, because there's performance issues
# with fsync on OS X that can make the SSD slow down to moving-platters
# drive speeds. Oops.
ramdisk-osx:
diskutil erasevolume HFS+ 'RAMDisk' $$(hdiutil attach -nobrowse -nomount ram://$$(expr 2097152 \* $(RAMDISK_SIZE)))
detach-ramdisk-osx:
hdiutil detach /Volumes/RAMDisk
testvsub-race:
@set -e; for pkg in $(GOPACKAGES); do \
echo; echo "___ testing subpkg $$pkg"; \
CGO_ENABLED=1 $(GO) test -tags='$(BUILD_TAGS) $(TEST_TAGS)' $(TESTFLAGS) -v -race -timeout $(RACE_TEST_TIMEOUT) $$pkg || break; \
echo; echo "999 done testing subpkg $$pkg"; \
done
bench:
$(GO) test $(GOPACKAGES) -bench=. -run=NoneZ -timeout=127m $(TESTFLAGS)
# Run test suite with coverage enabled
cover:
mkdir -p build
$(MAKE) test TESTFLAGS="-coverprofile=build/coverage.out"
# Run test suite with coverage enabled and view coverage results in browser
cover-viz: cover
$(GO) tool cover -html=build/coverage.out
# Build featurebase
build:
$(GO) build -tags='$(BUILD_TAGS)' -ldflags $(LDFLAGS) $(FLAGS) ./cmd/featurebase
package:
GOOS=$(GOOS) GOARCH=$(GOARCH) $(MAKE) build
GOOS=$(GOOS) GOARCH=$(GOARCH) $(MAKE) build-fbsql
GOARCH=$(GOARCH) VERSION=$(VERSION) nfpm package --packager deb --target featurebase.$(VERSION).$(GOARCH).deb
GOARCH=$(GOARCH) VERSION=$(VERSION) nfpm package --packager rpm --target featurebase.$(VERSION).$(GOARCH).rpm
# We allow setting a custom docker-compose "project". Multiple of the
# same docker-compose environment can exist simultaneously as long as
# they use different projects (the project name is prepended to
# container names and such). This is useful in a CI environment where
# we might be running multiple instances of the tests concurrently.
PROJECT ?= clustertests
DOCKER_COMPOSE = docker-compose -p $(PROJECT)
# Run cluster integration tests using docker. Requires docker daemon to be
# running and docker-compose to be installed.
clustertests: vendor
$(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml down
$(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml build
$(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml up -d pilosa1 pilosa2 pilosa3
PROJECT=$(PROJECT) $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml run client1
$(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml down
# Run the cluster tests with authentication enabled
AUTH_ARGS="-c /go/src/github.com/featurebasedb/featurebase/internal/clustertests/testdata/featurebase.conf"
authclustertests: vendor
CLUSTERTESTS_FB_ARGS=$(AUTH_ARGS) $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml down
CLUSTERTESTS_FB_ARGS=$(AUTH_ARGS) $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml build
CLUSTERTESTS_FB_ARGS=$(AUTH_ARGS) $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml up -d pilosa1 pilosa2 pilosa3
PROJECT=$(PROJECT) ENABLE_AUTH=1 $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml run client1
CLUSTERTESTS_FB_ARGS=$(AUTH_ARGS) $(DOCKER_COMPOSE) -f internal/clustertests/docker-compose.yml down
# Install FeatureBase and IDK
install: install-featurebase install-idk install-fbsql
install-featurebase:
$(GO) install -tags='$(BUILD_TAGS)' -ldflags $(LDFLAGS) $(FLAGS) ./cmd/featurebase
install-idk:
$(MAKE) -C ./idk install
install-fbsql:
CGO_ENABLED=1 $(GO) install ./cmd/fbsql
# Build the lattice assets
build-lattice:
docker build -t lattice:build ./lattice
export LATTICE=`docker create lattice:build`; docker cp $$LATTICE:/lattice/. ./lattice/build && docker rm $$LATTICE
# `go generate` protocol buffers
generate-protoc: require-protoc require-protoc-gen-gofast
$(GO) generate github.com/featurebasedb/featurebase/v3/pb
# `go generate` statik assets (lattice UI)
generate-statik: build-lattice require-statik
$(GO) generate github.com/featurebasedb/featurebase/v3/statik
# `go generate` statik assets (lattice UI) in Docker
generate-statik-docker: build-lattice
docker run --rm -t -v $(PWD):/pilosa golang:1.15.8 sh -c "go get github.com/rakyll/statik && /go/bin/statik -src=/pilosa/lattice/build -dest=/pilosa -f"
# `go generate` stringers
generate-stringer:
$(GO) generate github.com/featurebasedb/featurebase/v3
generate-pql: require-peg
cd pql && peg -inline pql.peg && cd ..
generate-proto-grpc: require-protoc require-protoc-gen-go
protoc -I proto proto/pilosa.proto --go_out=plugins=grpc:proto
# address re-generation here only if we need to
# protoc -I proto proto/vdsm.proto --go_out=plugins=grpc:proto
# `go generate` all needed packages
generate: generate-protoc generate-statik generate-stringer generate-pql
# Create release using Docker
docker-release:
$(MAKE) docker-build GOOS=linux GOARCH=amd64
$(MAKE) docker-build GOOS=linux GOARCH=arm64
$(MAKE) docker-build GOOS=darwin GOARCH=amd64
$(MAKE) docker-build GOOS=darwin GOARCH=arm64
# Build a release in Docker
docker-build: vendor
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--build-arg MAKE_FLAGS="TRIAL_DEADLINE=$(TRIAL_DEADLINE) GOOS=$(GOOS) GOARCH=$(GOARCH)" \
--build-arg SOURCE_DATE_EPOCH=$(SOURCE_DATE_EPOCH) \
--target pilosa-builder \
--tag featurebase:build .
docker create --name featurebase-build featurebase:build
mkdir -p build/featurebase-$(VERSION_ID)
docker cp featurebase-build:/pilosa/build/. ./build/featurebase-$(VERSION_ID)
cp NOTICE install/featurebase.conf install/featurebase*.service ./build/featurebase-$(VERSION_ID)
docker rm featurebase-build
tar -cvz -C build -f build/featurebase-$(VERSION_ID).tar.gz featurebase-$(VERSION_ID)/
# Create Docker image from Dockerfile
docker-image: vendor
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--build-arg MAKE_FLAGS="TRIAL_DEADLINE=$(TRIAL_DEADLINE)" \
--tag featurebase:$(VERSION) .
@echo Created docker image: featurebase:$(VERSION)
docker-image-featurebase: vendor
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--file Dockerfile-dax \
--tag dax/featurebase .
docker-image-featurebase-linux-amd64: vendor
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--platform linux/amd64 \
--file Dockerfile-dax \
--tag dax/featurebase .
docker-image-featurebase-test: vendor
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--file Dockerfile-clustertests \
--tag dax/featurebase-test .
# build-for-quick builds a linux featurebase binary outside of docker
# (which is much faster for some reason), and places it in the .quick
# subdirectory.
build-for-quick:
GOOS=linux $(MAKE) build FLAGS="-o .quick/fb_linux"
# docker-image-featurebase-quick uses a pre-built featurebase binary
# to quickly create a fresh docker image without needing to send the
# context of the featurebase top level directory.
docker-image-featurebase-quick: build-for-quick
docker build \
--build-arg GO_VERSION=$(GO_VERSION) \
--file Dockerfile-dax-quick \
--tag dax/featurebase ./.quick/
docker-image-datagen: vendor
docker build --tag dax/datagen --file Dockerfile-datagen .
get-account-id:
$(eval AWS_ACCOUNTID := $(shell aws sts get-caller-identity --output=json | jq -r .Account))
ecr-push-featurebase: docker-login
echo "Pushing to account $(AWS_ACCOUNTID), profile $(AWS_PROFILE)"
docker tag dax/featurebase:latest $(AWS_ACCOUNTID).dkr.ecr.us-east-2.amazonaws.com/dax/featurebase:latest
docker push $(AWS_ACCOUNTID).dkr.ecr.us-east-2.amazonaws.com/dax/featurebase:latest
ecr-push-datagen: docker-login
docker tag dax/datagen:latest $(AWS_ACCOUNTID).dkr.ecr.us-east-2.amazonaws.com/dax/datagen:latest
docker push $(AWS_ACCOUNTID).dkr.ecr.us-east-2.amazonaws.com/dax/datagen:latest
docker-login: get-account-id
aws ecr get-login-password --region us-east-2 | docker login --username AWS --password-stdin $(AWS_ACCOUNTID).dkr.ecr.us-east-2.amazonaws.com
# Create docker image (alias)
docker: docker-image # alias
# Tag and push a Docker image
docker-tag-push: vendor
docker tag "featurebase:$(VERSION)" $(DOCKER_TARGET)
docker push $(DOCKER_TARGET)
@echo Pushed docker image: $(DOCKER_TARGET)
# These commands (docker-idk and docker-idk-tag-push)
# are designed to be used in CI.
# docker-idk builds idk docker images and tags them - intended for use in CI.
docker-idk: vendor
docker build \
-f idk/Dockerfile \
--build-arg GO_VERSION=$(GO_VERSION) \
--build-arg MAKE_FLAGS="GOOS=$(GOOS) GOARCH=$(GOARCH) BUILD_CGO=$(BUILD_CGO)" \
--tag registry.gitlab.com/molecula/featurebase/idk:$(VERSION_ID) .
@echo Created docker image: registry.gitlab.com/molecula/featurebase/idk:$(VERSION_ID)
# docker-idk-tag-push pushes tagged docker images to the GitLab container
# registry - intended for use in CI.
docker-idk-tag-push:
docker push registry.gitlab.com/molecula/featurebase/idk:$(VERSION_ID)
@echo Pushed docker image: registry.gitlab.com/molecula/featurebase/idk:$(VERSION_ID)
# Run golangci-lint
golangci-lint: require-golangci-lint
golangci-lint run --timeout 3m --skip-files '.*\.peg\.go'
# Alias
linter: golangci-lint
# Better alias
ocd: golangci-lint
######################
# Build dependencies #
######################
# Verifies that needed build dependency is installed. Errors out if not installed.
require-%:
$(if $(shell command -v $* 2>/dev/null),\
$(info Verified build dependency "$*" is installed.),\
$(error Build dependency "$*" not installed. To install, try `make install-$*`))
install-build-deps: install-protoc-gen-gofast install-protoc install-statik install-peg
install-statik:
go install github.com/rakyll/statik@latest
install-protoc-gen-gofast:
GO111MODULE=off $(GO) get -u github.com/gogo/protobuf/protoc-gen-gofast
install-protoc:
@echo This tool cannot automatically install protoc. Please download and install protoc from https://google.github.io/proto-lens/installing-protoc.html
@echo On mac, brew install protobuf seems to work.
@echo As of the commit that added this line, protoc-gen-gofast was at 226206f39bd7, and the protoc version in use was:
@echo $$ protoc --version
@echo libprotoc 3.19.4
install-peg:
GO111MODULE=off $(GO) get github.com/pointlander/peg
install-golangci-lint:
GO111MODULE=off $(GO) get github.com/golangci/golangci-lint/cmd/golangci-lint
test-external-lookup:
$(GO) test . -tags='$(BUILD_TAGS) $(TEST_TAGS)' $(TESTFLAGS) -run ^TestExternalLookup$$ -externalLookupDSN $(EXTERNAL_LOOKUP_DSN)
bnf:
ebnf2railroad --no-overview-diagram --no-optimizations ./sql3/sql3.ebnf
#################################
# fbsql builds in docker
#################################
# This allows multiple concurrent builds to happen in CI without
# creating container name conflicts and such. (different BUILD_NAMEs
# are passed in from gitlab-ci.yml)
BUILD_NAME ?= fbsql-build
LDFLAGS_STATIC="-linkmode external -extldflags \"-static\" -X 'github.com/featurebasedb/featurebase/v3/fbsql.Version=$(VERSION)' -X 'github.com/featurebasedb/featurebase/v3/fbsql.BuildTime=$(BUILD_TIME)' "
UNAME_P := $(shell uname -p)
BUILD_CGO ?= 0
# Build fbsql
build-fbsql:
@echo GOOS=$(GOOS) GOARCH=$(GOARCH) uname -p=$(UNAME_P) build_cgo=$(BUILD_CGO)
ifeq ($(BUILD_CGO), 0)
make build-fbsql-non-cgo
endif
ifeq ($(BUILD_CGO), 1)
make build-fbsql-cgo
endif
build-fbsql-non-cgo:
CGO_ENABLED=0 $(GO) build -ldflags $(LDFLAGS) $(GO_BUILD_FLAGS) -o fbsql ./cmd/fbsql
build-fbsql-cgo:
ifeq ($(GOARCH), arm64)
CGO_ENABLED=1 $(GO) build -tags dynamic $(GO_BUILD_FLAGS) -o fbsql ./cmd/fbsql
endif
ifeq ($(GOARCH), amd64)
CC=/usr/bin/musl-gcc CGO_ENABLED=1 $(GO) build -tags "musl static" -ldflags $(LDFLAGS_STATIC) $(GO_BUILD_FLAGS) -o fbsql ./cmd/fbsql
endif
docker-build-fbsql: vendor
DOCKER_BUILDKIT=0 docker build \
--file Dockerfile-fbsql \
--build-arg GO_VERSION=$(GO_VERSION) \
--build-arg MAKE_FLAGS="GOOS=$(GOOS) GOARCH=$(GOARCH) BUILD_CGO=$(BUILD_CGO)" \
--build-arg GO_BUILD_FLAGS=$(GO_BUILD_FLAGS) \
--build-arg SOURCE_DATE_EPOCH=$(SOURCE_DATE_EPOCH) \
--target builder \
--tag fbsql:$(BUILD_NAME) .
mkdir -p build
docker create --name $(BUILD_NAME) fbsql:$(BUILD_NAME)
docker cp $(BUILD_NAME):/featurebase/fbsql ./build/fbsql_$(GOOS)_$(GOARCH)
docker rm $(BUILD_NAME)
default:
vendor:
godep save ./...
cp -r $(GOPATH)/src/github.com/gogo/protobuf/proto/testdata vendor/github.com/gogo/protobuf/proto/testdata

26
NOTES Normal file
View file

@ -0,0 +1,26 @@
DB Profile
┌───────────▼────────────────────────────┐
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
Bitmap──▶0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│────────────────────────────────────────┤
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│0000000000000000000000000000000000000000│
│────────────────────────────────────────┤
F ▶│0000000000000000000000000000000000000000│
r ││0000000000000000000000000000000000000000│
a ││0000000000000000000000000000000000000000│
m ││0000000000000000000000000000000000000000│
e ▶│0000000000000000000000000000000000000000│
└────────────────────────────────────────┘
▲───────────▲
Slice
Fragment=intersection of frame & slice

109
NOTICE
View file

@ -1,109 +0,0 @@
Software license
================
Copyright (C) 2017-2021 Molecula Corp. All rights reserved.
Third-party software licenses
=============================
The file /lru/lru.go contains a redistribution of lru
(github.com/golang/groupcache/lru); the license follows:
Copyright 2013 Google Inc.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
The file /roaring/btree.go contains a modified redistribution of b
(https://github.com/cznic/b); the license follows:
Copyright (c) 2014 The b Authors. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following disclaimer
in the documentation and/or other materials provided with the
distribution.
* Neither the names of the authors nor the names of the
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
The file /server/tlsconfig.go contains a modified redistribution of bridge
(https://github.com/robustirc/bridge); the license follows:
Copyright © 2014-2015 The RobustIRC Authors. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
* Neither the name of RobustIRC nor the names of contributors may be used
to endorse or promote products derived from this software without
specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
The files /logger/filewriter.go and /logger/filewriter_test.go contain a modified redistribution of reopen (github.com/client9/reopen); the license follows:
The MIT License (MIT)
Copyright (c) 2015 Nick Galbreath
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.

View file

@ -1,45 +0,0 @@
## User Contribution Guidelines for FeatureBase
Thank you for your interest in contributing to FeatureBase! We appreciate your support in making this open-source project even better. Here are some guidelines to help you get started with contributing to FeatureBase:
1. Familiarize Yourself with the Project:
- Visit the FeatureBase website at www.featurebase.com to understand the project's goals, capabilities, and features.
- Read the documentation available on the website, including the installation guide, configuration options, and data modeling concepts.
- Explore the codebase by cloning the repository and reviewing the source code.
2. Join the Community:
- Visit the FeatureBase community page at https://www.featurebase.com/community to learn more about the project's community and how to get involved.
- Join the Discord server at https://discord.gg/FBn2vEp7Na to chat with other contributors and users, ask questions, and share your ideas.
3. Set Up Your Development Environment:
- Ensure you have Go installed on your machine. Make sure your shell's search path includes the go/bin directory.
- Clone the FeatureBase repository or download it as a zip file from the repository's page.
- Follow the "Build FeatureBase Server from source" instructions in the README file to compile the server binary and the ingester binaries.
4. Choose a Contribution Area:
- Identify the area you'd like to contribute to, such as bug fixes, new features, performance improvements, documentation updates, or community support.
- Check the issue tracker on the repository or the FeatureBase community for open issues or feature requests that align with your interests and skills. Alternatively, propose your own idea by creating a new issue.
5. Create a New Branch:
- Before making any changes, create a new branch in the repository's Git repository. This branch will contain your contributions.
- Give your branch a descriptive name that reflects the nature of your contribution.
6. Make Your Changes:
- Follow the coding style and conventions used in the existing codebase.
- Write clear and concise commit messages for each logical change.
- If you're introducing new features or modifying existing behavior, make sure to update the documentation to reflect the changes.
7. Test Your Changes:
- Run the existing test suite to ensure that your modifications do not introduce any regressions.
- If applicable, write additional tests to cover the changes you made.
- Document any new testing procedures required for your contribution.
8. Submitting Your Contribution:
- Push your branch to the main repository or create a fork and submit a pull request to the main repository.
- Provide a detailed description of your changes, including the problem you solved and the approach you took.
- Be responsive to any feedback or suggestions provided by the project maintainers or other contributors.
- Once your contribution is approved, it will be reviewed and merged into the main codebase.
Please note that by contributing to FeatureBase, you agree that your contributions will be licensed under the Apache 2.0 license, which governs the project.
Thank you for considering contributing to FeatureBase! Your contributions are valuable and help improve the project for everyone.

65
README-dev.md Normal file
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Development Environment
=======================
Install Go versions 1.6.2+ or 1.7 for your platform.
Fork `github.com/pilosa/pilosa` to your own account. The forked repo will be private.
Make sure `$GOPATH` environment variable points to your Go working directory and `$PATH` incudes `$GOPATH/bin`.
Create a directory (note that we use `github.com/pilosa`, NOT `github.com/USER`) and clone your own Pilosa repo:
```sh
mkdir -p ${GOPATH}/src/github.com/pilosa && cd $_
git clone git@github.com:${USER}/pilosa.git
```
`cd` to your pilosa directory:
```sh
cd ${GOPATH}/src/github.com/pilosa/pilosa
```
Install [Glide][] to manage dependencies.
Install Pilosa command line tools:
```sh
go install github.com/pilosa/pilosa/cmd/...
```
Running `pilosa` should now run a Pilosa instance.
In order to sync your fork with upstream Pilosa repo, add an *upstream* to your repo:
```sh
cd ${GOPATH}/src/github.com/pilosa/pilosa
git remote add upstream git@github.com:pilosa/pilosa.git
```
Before starting to work on a task, sync your branch with the upstream:
```sh
git fetch upstream
git checkout master
git merge upstream/master
```
Create a branch for the task:
```sh
git checkout -b a-branch-for-the-task
```
Update the code in the branch, and commit it.
Push it to your own repo:
```sh
git push --set-upstream origin a-branch-for-the-task
```
All left to do is creating a pull request on github.com.
[Glide]: http://glide.sh/

332
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@ -1,72 +1,304 @@
# FeatureBase Community
# pilosa
FeatureBase Community is now archived and no longer maintained.
Pilosa is a bitmap index database.
* [FeatureBase Community Help](https://github.com/FeatureBaseDB/FB-community-help)
## Pilosa is now FeatureBase
As of September 7, 2022, the Pilosa project is now FeatureBase. The core of the project remains the same: FeatureBase is the first real-time distributed database built entirely on bitmaps. (More information about updated capabilities and improvements below.)
FeatureBase delivers low-latency query results, regardless of throughput or query volumes, on fresh data with extreme efficiency. It works because bitmaps are faster, simpler, and far more I/O efficient than traditional column-oriented data formats. With FeatureBase, you can ingest data from batch data sources (e.g. S3, CSV, Snowflake, BigQuery, etc.) and/or streaming data sources (e.g. Kafka/Confluent, Kinesis, Pulsar).
For more information about FeatureBase, please visit [www.featurebase.com][HomePage].
## Getting Started
* [Learn how to install FeatureBase Community](https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/community/com-getstart/com-getstart-home.md)
Pilosa requires Go 1.7 or greater.
### Build FeatureBase Server from source
You can download the source by running `go get`:
0. Install go. Ensure that your shell's search path includes the go/bin directory.
1. Clone the FeatureBase repository (or download as zip).
2. In the featurebase directory, run `make install` to compile the FeatureBase server binary. By default, it will be installed in the go/bin directory.
3. In the idk directory, run `make install` to compile the ingester binaries. By default, they will be installed in the go/bin directory.
4. Run `featurebase server --handler.allowed-origins=http://localhost:3000` to run FeatureBase server with default settings (learn more about configuring FeatureBase at the link below). The `--handler.allowed-origins` parameter allows the standalone web UI to talk to the server; this can be omitted if the web UI is not needed.
5. Run `curl localhost:10101/status` to verify the server is running and accessible.
```sh
$ go get github.com/pilosa/pilosa
```
### Data Model
Now you can install the `pilosa` binary:
Because FeatureBase is built on bitmaps, there is bit of a learning curve to grasp how your data is represented.
```sh
$ go install github.com/pilosa/pilosa/cmd/...
```
* [Learn about Data Modeling](https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/concepts/concepts-home.md)
Now run a single pilosa node with the default configuration:
```sh
pilosa
```
If you would like to quickly create a multi-node pilosa cluster, see the `pilosactl create` documentation.
## Configuration
You can specify a configuration by setting the `-config` flag when running `pilosa`.
### Ingest Data and Query
```sh
pilosa -config custom-config-file.cfg
```
* [Learn how to ingest data from multiple data sources](https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/community/com-ingest/com-ingest-manage.md)
The config file uses the [TOML](https://github.com/toml-lang/toml) configuration file format,
and should look like:
## Community
```
data-dir = "/tmp/pil0"
host = "127.0.0.1:15000"
You can email us at community@featurebase.com and [learn more about contributing](https://github.com/FeatureBaseDB/featurebase/blob/master/OPENSOURCE.md).
[cluster]
replicas = 2
Chat with us: [https://discord.gg/FBn2vEp7Na][Discord]
[[cluster.node]]
host = "127.0.0.1:15000"
## What's Changed Since the Pilosa Days?
[[cluster.node]]
host = "127.0.0.1:15001"
```
A lot has changed since the days of Pilosa. This list highlights some new capabilites included in FeatureBase. We have also made signficant improvements to the performance, scalability, and stability of the FeatureBase product.
The first two configuration options will be unique to each node in the cluster:
* Query Languages: FeatureBase supports Pilosa Query Language (PQL), as well as SQL
* Stream and Batch Ingest: Combine real-time data streams with batch historical data and act on it within milliseconds.
* Mutable: Perform inserts, updates, and deletes at scale, in real time and on-the-fly. This is key for meeting data compliance requirements, and for reflecting the constantly-changing nature of high-volume data.
* Multi-Valued Set Fields: Store multiple comma-delimited values within a single field while *increasing* query performance of counts, TopKs, etc.
* Time Quantums: Setting a time quantum on a field creates extra views which allow ranged Row queries down to the time interval specified. For example, if the time quantum is set to YMD, ranged Row queries down to the granularity of a day are supported.
* RBF storage backend: this is a new compressed bitmap format which improves performance in a number of ways: ACID support on a per shard basis, prevents issues with the number of open files, reduces memory allocation and lock contention for reads, provides more consistent garbage collection, and allows backups to run concurrently with writes. However, because of this change, Pilosa backup files cannot be restored into FeatureBase.
`data-dir`: directory in which data is stored to disk
## License
`host`: IP and port of the pilosa node
FeatureBase is licensed under the [Apache License, Version 2.0][License]
The remaining configuration options should be the same on every node in the cluster.
[Community]: https://github.com/FeatureBaseDB/FB-community-help/tree/main
[Install]:https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/community/com-getstart/com-getstart-home.md
[Config]: https://github.com/FeatureBaseDB/FB-community-help/tree/main/docs/community/com-config
[DataModel]: https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/concepts/concepts-home.md
[Discord]: https://discord.gg/FBn2vEp7Na
[HomePage]: http://featurebase.com?utm_campaign=Open%20Source&utm_source=GitHub
[Ingest]: https://github.com/FeatureBaseDB/FB-community-help/blob/main/docs/community/com-ingest/com-ingest-manage.md
[License]: http://www.apache.org/licenses/LICENSE-2.0
[PQL]: https://docs.featurebase.com/docs/pql-guide/pql-home/?utm_campaign=Open%20Source&utm_source=GitHub
[SQL]: https://docs.featurebase.com/docs/sql-guide/sql-guide-home/?utm_campaign=Open%20Source&utm_source=GitHub
`replicas`: the number of replicas within the cluster
`[[cluster.node]]`: specifies each node within the cluster
## Usage
You can interact with Pilosa via HTTP requests to the host:port on which you have Pilosa running.
The following examples illustrate how to do this using `curl` with a Pilosa cluster running on
127.0.0.1 port 15000.
Return the version of Pilosa:
```sh
$ curl "http://127.0.0.1:15000/version"
```
Return a list of all databases and frames in the index:
```sh
$ curl "http://127.0.0.1:15000/schema"
```
### Queries
Queries to Pilosa require sending a POST request where the query itself is sent as POST data.
You specify the database on which to perform the query with a URL argument `db=database-name`.
A query sent to database `exampleDB` will have the following format:
```sh
$ curl -X POST "http://127.0.0.1:15000/query?db=exampleDB" -d 'Query()'
```
The `Query()` object referenced above should be made up of one or more of the query types listed below.
So for example, a SetBit() query would look like this:
```sh
$ curl -X POST "http://127.0.0.1:15000/query?db=exampleDB" -d 'SetBit(id=10, frame="foo", profileID=1)'
```
Query results have the format `{"results":[]}`, where `results` is a list of results for each `Query()`. This
means that you can provide multiple `Query()` objects with each HTTP request and `results` will contain
the results of all of the queries.
```sh
$ curl -X POST "http://127.0.0.1:15000/query?db=exampleDB" -d 'Query() Query() Query()'
```
---
#### SetBit()
```
SetBit(id=10, frame="foo", profileID=1)
```
A return value of `{"results":[true]}` indicates that the bit was toggled from 0 to 1.
A return value of `{"results":[false]}` indicates that the bit was already set to 1 and therefore nothing changed.
---
#### ClearBit()
```
ClearBit(id=10, frame="foo", profileID=1)
```
A return value of `{"results":[true]}` indicates that the bit was toggled from 1 to 0.
A return value of `{"results":[false]}` indicates that the bit was already set to 0 and therefore nothing changed.
---
#### SetBitmapAttrs()
```
SetBitmapAttrs(id=10, frame="foo", category=123, color="blue", happy=true)
```
Returns `{"results":[null]}`
---
#### Bitmap()
```
Bitmap(id=10, frame="foo")
```
Returns `{"results":[{"attrs":{"category":123,"color":"blue","happy":true},"bits":[1,2]}]}` where `attrs` are the
attributes set using `SetBitmapAttrs()` and `bits` are the bits set using `SetBit()`.
---
#### Union()
```
Union(Bitmap(id=10, frame="foo"), Bitmap(id=20, frame="foo")))
```
Returns a result set similar to that of a `Bitmap()` query, only the `attrs` dictionary will be empty: `{"results":[{"attrs":{},"bits":[1,2]}]}`.
Note that a `Union()` query can be nested within other queries anywhere that you would otherwise provide a `Bitmap()`.
---
#### Intersect()
```
Intersect(Bitmap(id=10, frame="foo"), Bitmap(id=20, frame="foo")))
```
Returns a result set similar to that of a `Bitmap()` query, only the `attrs` dictionary will be empty: `{"results":[{"attrs":{},"bits":[1]}]}`.
Note that an `Intersect()` query can be nested within other queries anywhere that you would otherwise provide a `Bitmap()`.
---
#### Difference()
```
Difference(Bitmap(id=10, frame="foo"), Bitmap(id=20, frame="foo")))
```
`Difference()` represents all of the bits that are set in the first `Bitmap()` but are not set in the second `Bitmap()`. It returns a result set similar to that of a `Bitmap()` query, only the `attrs` dictionary will be empty: `{"results":[{"attrs":{},"bits":[2]}]}`.
Note that a `Difference()` query can be nested within other queries anywhere that you would otherwise provide a `Bitmap()`.
---
#### Count()
```
Count(Bitmap(id=10, frame="foo"))
```
Returns the count of the number of bits set in `Bitmap()`: `{"results":[28]}`
---
#### Range()
```
Range(id=10, frame="foo", start="1970-01-01T00:00", end="2000-01-02T03:04")
```
---
#### TopN()
```
TopN(frame="bar", n=20)
```
Returns the top 20 Bitmaps from frame `bar`.
```
TopN(Bitmap(id=10, frame="foo"), frame="bar", n=20)
```
Returns the top 20 Bitmaps from `bar` sorted by the count of bits in the intersection with `Bitmap(id=10)`.
```
TopN(Bitmap(id=10, frame="foo"), frame="bar", n=20, field="category", [81,82])
```
Returns the top 20 Bitmaps from `bar`in attribute `category` with values `81 or
82` sorted by the count of bits in the intersection with `Bitmap(id=10)`.
## Development
### Updating dependencies
To update dependencies, you'll need to install [Glide][].
Then add the new dependencies in your project:
```sh
$ glide get github.com/foo/bar
```
### Protobuf
If you update protobuf (pilosa/internal/internal.proto), then you need to run `go generate`
```sh
$ go generate
```
### Version
In order to set the version number, compile Pilosa with the following argument:
```sh
$ go install --ldflags="-X main.Version=1.0.0"
```
[Glide]: http://glide.sh/
## Pilosactl
Pilosactl contains a suite of tools for interacting with pilosa. Run `pilosactl` for an overview of commands, and `pilosactl <command> -h` for specific information on that command.
### Create
`pilosactl create` is used to create pilosa clusters. It has a number of options for controlling how the cluster is configured, what hosts it is on, and even the ability to build the pilosa binary locally and copy it to each cluster node automatically. To start pilosa on remote hosts, you only need `ssh` access to those hosts. See `pilosactl create -h` for a full list of options.
Examples:
Create a 5 node cluster locally (using 5 different ports), with a replication factor of 2.
```
pilosactl create \
-serverN 5 \
-replicaN 2
```
Create a cluster on 3 remote hosts - all logs will come to local stderr, pilosa binary must be available on remote hosts. The ssh user on the remote hosts needs to be the same as your local user. Otherwise use the `ssh-user` option.
```
pilosactl create \
-hosts="node1.example.com:15000,node2.example.com:15000,node3.example.com:15000"
```
Create a cluster on 3 remote hosts running OSX, but build the binary locally and copy it up. Stream the stderr of each node to a separate local log file.
```
pilosactl create \
-hosts="mac1.example.com:15000,mac2.example.com:15000,mac3.example.com:15000" \
-copy-binary \
-goos=darwin \
-goarch=amd64 \
-log-file-prefix=clusterlogs
```
### Bagent
`pilosactl bagent` is what you want if you just want to run a simple benchmark against an existing cluster. Running it with no arguments will print some help, including the set of subcommands that it may be passed. Calling a subcommand with `-h'` will print the options for that subcommand. The `agent-num` flag can be passed an integer which can change the behavior the benchmarks that are run. This is useful when multiple invocations of the same benchmark are made by the `bspawn` command - they can each (for example) set different bits even though they all have the same arguments.
E.G.
```
pilosactl bagent \
-hosts="localhost:15000,localhost:15001" \
import -h
```
Multiple subcommands and their arguments may be concatenated at the command line and they will be run serially. This is useful (i.e.) for importing a bunch of data, and then executing queries against it.
This will generate and import a bunch of data, and then execute random queries against it.
```
pilosactl bagent \
-hosts="localhost:15000,localhost:15001" \
import -max-bits-per-map=10000 \
random-query -iterations 100
```
### Bspawn
`pilosactl bspawn` allows you to automate the creation of clusters and the running of complex benchmarks which span multiple benchmark agents against them. It has a number of options which are described by `pilosactl bspawn` with no arguments, and also takes a config file which describes the Benchmark itself - this file is described below.
#### Configuration Format
The configuration file is a json object with the top level key `benchmarks`. This contains a list of objects each of which represents a `bagent` command (the `args` key) that will be run some number of times concurrently (the `num` key), and a `name` which should describe the overall effect that command. An example is below.
```json
{
"benchmarks": [
{
"num": 3,
"name": "set-diags",
"args": ["diagonal-set-bits", "-iterations", "30000", "-client-type", "round_robin"]
},
{
"num": 2,
"name": "rand-plus-zipf",
"args": ["random-set-bits", "-iterations", "20000", "zipf", "-iterations", "100"]
}
]
}
```
All of the benchmarks, and agents are run concurrently. Each agent will be passed an `agent-num` which can modify the behavior in a way that is benchmark specific. See the documentation for each benchmark to see how `agent-num` changes its behavior.

3525
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// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package client
import (
"context"
"crypto/tls"
"sync"
"github.com/featurebasedb/featurebase/v3/logger"
pb "github.com/featurebasedb/featurebase/v3/proto"
"github.com/pkg/errors"
"google.golang.org/grpc"
"google.golang.org/grpc/connectivity"
"google.golang.org/grpc/credentials"
"google.golang.org/grpc/credentials/insecure"
)
const maxMsgSize = 1024 * 1024 * 100 // 100 megs ought to be enough for anybody!
// GRPCClient is a client for working with the gRPC server.
type GRPCClient struct {
dialTargets []string
tlsConfig *tls.Config
logger logger.Logger
mu sync.RWMutex
conn *grpc.ClientConn
targetIndex int
}
// NewGRPCClient returns a new instance of GRPCClient.
func NewGRPCClient(dialTargets []string, tlsConfig *tls.Config, logger logger.Logger) (*GRPCClient, error) {
c := &GRPCClient{
dialTargets: dialTargets,
tlsConfig: tlsConfig,
logger: logger,
}
// resetConn sets GRPCClient.conn when it doesn't
// exist yet.
if err := c.resetConn(); err != nil {
return nil, errors.Wrap(err, "setting connection")
}
return c, nil
}
// resetConn resets the gRPC client connection. This method
// can also be used to initially set the client connection
// because it only tries to first close the connection if
// the connection already exists.
func (c *GRPCClient) resetConn() error {
c.mu.Lock()
defer c.mu.Unlock()
// If an existing connection exists, close it first.
if c.conn != nil {
if err := c.conn.Close(); err != nil {
return errors.Wrap(err, "closing existing connection")
}
}
var opts []grpc.DialOption
if c.tlsConfig != nil {
creds := credentials.NewTLS(c.tlsConfig)
opts = append(opts, grpc.WithTransportCredentials(creds))
} else {
opts = append(opts, grpc.WithTransportCredentials(insecure.NewCredentials()))
}
opts = append(opts, grpc.WithDefaultCallOptions(grpc.MaxCallRecvMsgSize(maxMsgSize)))
var err error
if c.conn, err = grpc.Dial(c.dialTargets[c.getTargetIndex()], opts...); err != nil {
return errors.Wrap(err, "creating new grpc client")
}
return nil
}
// getTargetIndex gets the current target index, then increments it for
// next time. Unprotected.
func (c *GRPCClient) getTargetIndex() int {
if len(c.dialTargets) == 0 {
return 0
}
ret := c.targetIndex
c.targetIndex = (c.targetIndex + 1) % len(c.dialTargets) // cycle through dialTargets
return ret
}
// Close closes any connections the client has opened.
func (c *GRPCClient) Close() error {
c.mu.RLock()
defer c.mu.RUnlock()
if c.conn != nil {
return c.conn.Close()
}
return nil
}
// Conn returns the gRPC client connection. If the connection
// has gone into state `TransientFailure`, this method tries
// to reset the connection and return that new connection.
func (c *GRPCClient) Conn() *grpc.ClientConn {
c.mu.RLock()
if c.conn == nil {
c.mu.RUnlock()
return nil
} else if c.conn.GetState() != connectivity.TransientFailure {
defer c.mu.RUnlock()
return c.conn
}
c.mu.RUnlock()
if err := c.resetConn(); err != nil {
c.logger.Errorf("error resetting connection: %s", err)
}
c.mu.RLock()
defer c.mu.RUnlock()
return c.conn
}
// Query returns a stream of RowResponse for the given index and PQL string.
func (c *GRPCClient) Query(ctx context.Context, index string, pql string) (pb.StreamClient, error) {
conn := c.Conn()
if conn == nil {
return nil, errors.New("client has not established a grpc connection")
}
grpcClient := pb.NewPilosaClient(conn)
stream, err := grpcClient.QueryPQL(ctx, &pb.QueryPQLRequest{
Index: index,
Pql: pql,
})
if err != nil {
return nil, errors.Wrap(err, "getting stream")
} else if stream == nil {
return nil, errors.New("could not create stream")
}
return stream, err
}
// QueryUnary returns a TableResponse for the given index and PQL string.
func (c *GRPCClient) QueryUnary(ctx context.Context, index string, pql string) (*pb.TableResponse, error) {
conn := c.Conn()
if conn == nil {
return nil, errors.New("client has not established a grpc connection")
}
grpcClient := pb.NewPilosaClient(conn)
return grpcClient.QueryPQLUnary(ctx, &pb.QueryPQLRequest{
Index: index,
Pql: pql,
})
}
// Inspect returns a stream of RowResponse for the given index, columns, and filters.
// It is intended to mimic something like "select [fields] from table where recordID IN (...)".
func (c *GRPCClient) Inspect(ctx context.Context, index string, columnIDs []uint64, columnKeys []string, query string, fieldFilters []string, limit, offset uint64) (pb.StreamClient, error) {
conn := c.Conn()
if conn == nil {
return nil, errors.New("client has not established a grpc connection")
}
if len(columnIDs) > 0 && len(columnKeys) > 0 {
return nil, errors.New("only provide column ids or keys, not both")
}
// Convert columns to proto type IdsOrKeys.
idsOrKeys := &pb.IdsOrKeys{}
if len(columnKeys) > 0 {
idsOrKeys.Type = &pb.IdsOrKeys_Keys{Keys: &pb.StringArray{Vals: columnKeys}}
} else {
idsOrKeys.Type = &pb.IdsOrKeys_Ids{Ids: &pb.Uint64Array{Vals: columnIDs}}
}
grpcClient := pb.NewPilosaClient(conn)
stream, err := grpcClient.Inspect(ctx, &pb.InspectRequest{
Index: index,
Columns: idsOrKeys,
FilterFields: fieldFilters,
Limit: limit,
Offset: offset,
Query: query,
})
if err != nil {
return nil, errors.Wrap(err, "getting stream")
} else if stream == nil {
return nil, errors.New("could not create stream")
}
return stream, err
}

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@ -1,987 +0,0 @@
// Copyright 2021 Molecula Corp. All rights reserved.
package pilosa
import (
"context"
"io"
"log"
"sync"
"github.com/featurebasedb/featurebase/v3/dax"
"github.com/featurebasedb/featurebase/v3/dax/computer"
"github.com/featurebasedb/featurebase/v3/dax/storage"
"github.com/featurebasedb/featurebase/v3/disco"
"github.com/pkg/errors"
)
// ApplyDirective applies a Directive received, from the Controller, at the
// /directive endpoint.
func (api *API) ApplyDirective(ctx context.Context, d *dax.Directive) error {
// Get the current directive for comparison.
previousDirective := api.holder.Directive()
// Check that incoming version is newer.
// Note: 0 is an invalid Directive version. This decision was made because
// previousDirective is not a pointer to a directive, but a concrete
// Directive. Which means we can't check for nil, and by default it has a
// version of 0. So in order to ensure the version has increased, we need to
// require that incoming directive versions are greater than 0.
if d.Version == 0 {
return errors.Errorf("directive version cannot be 0")
} else if previousDirective.Version >= d.Version {
return errors.Errorf("directive version mismatch, got %d, but already have %d", d.Version, previousDirective.Version)
}
// Handle the operations based on the directive method.
switch d.Method {
case dax.DirectiveMethodDiff:
// In order to prevent adding too much code specific to handling a diff
// directive (e.g. adding something like an `enactDirectiveDiff()`
// method), we are instead going to build a full Directive based on the
// diff, and then proceed normally as if we had received a full
// Directive. We do that by copying the previous Directive and then
// applying the diffs to the copy.
newD := previousDirective.Copy()
// Apply the diffs from the incoming Directive to the new, copied
// Directive.
newD.ApplyDiff(d)
// Now proceed with the new diff as if we had received it as a full diff.
d = newD
case dax.DirectiveMethodFull:
// pass: normal operation
case dax.DirectiveMethodReset:
// Delete all tables.
if err := api.deleteAllIndexes(ctx); err != nil {
return errors.Wrap(err, "deleting all indexes")
}
// Set previousDirective to empty so the diff handles everything as new.
previousDirective = dax.Directive{}
case dax.DirectiveMethodSnapshot:
// TODO(tlt): this was the existing logic, but we should really diff the
// directive and ensure that overwriting the value in the cache doesn't
// have a negative effect.
api.holder.SetDirective(d)
return nil
default:
return errors.Errorf("invalid directive method: %s", d.Method)
}
// Cache this directive as the latest applied. There is functionality within
// the "enactDirective" stage of ApplyDirective which validates against this
// cached Directive, so it's important that it be set before calling
// enactDirective(). An example: when loading partition data from the
// Writelogger, there are validations to ensure that the partition being
// loaded is meant to be handled by this node; that validation is done
// against the cached Directive.
// TODO(tlt): despite what this comment says, this logic is not sound; we
// shouldn't be setting the directive until enactiveDirective() succeeds.
api.holder.SetDirective(d)
defer api.holder.SetDirectiveApplied(true)
return api.enactDirective(ctx, &previousDirective, d)
}
// deleteAllIndexes deletes all indexes handled by this node.
func (api *API) deleteAllIndexes(ctx context.Context) error {
indexes, err := api.Schema(ctx, false)
if err != nil {
return errors.Wrap(err, "getting schema")
}
for i := range indexes {
if err := api.DeleteIndex(ctx, indexes[i].Name); err != nil {
return errors.Wrapf(err, "deleting index: %s", indexes[i].Name)
}
}
return nil
}
// directiveJobType allows us to switch on jobType in the directiveWorker in
// order to use a single worker pool for all job types (as opposed to having a
// separate worker pool for each job type).
type directiveJobType interface {
// We have this method just to prevent *any* struct from implementing this
// interface automatically. But, interestingly enough, we don't actually
// have to have this method on the implementation because we embed the
// interface.
isJobType() bool
}
type directiveJobTableKeys struct {
directiveJobType
idx *Index
tkey dax.TableKey
partition dax.PartitionNum
}
type directiveJobFieldKeys struct {
directiveJobType
tkey dax.TableKey
field dax.FieldName
}
type directiveJobShards struct {
directiveJobType
tkey dax.TableKey
shard dax.ShardNum
}
// directiveWorker is a worker in a worker pool which handles portions of a
// directive. Multiple instances of directiveWorker run in goroutines in order
// to load data from snapshotter and writelogger concurrently. Note: unlike the
// api.ingestWorkerPool, of which one pool is always running, the
// directiveWorker pool is only running during the life of the
// api.ApplyDirective call. Technically, this means that multiple
// directiveWorker pools could be active at the same time, but we should never
// be running more than once instance of ApplyDirective concurrently.
func (api *API) directiveWorker(ctx context.Context, jobs <-chan directiveJobType, errs chan<- error) {
for j := range jobs {
switch job := j.(type) {
case directiveJobTableKeys:
if err := api.loadTableKeys(ctx, job.idx, job.tkey, job.partition); err != nil {
errs <- errors.Wrapf(err, "loading table keys: %s, %s", job.tkey, job.partition)
}
case directiveJobFieldKeys:
if err := api.loadFieldKeys(ctx, job.tkey, job.field); err != nil {
errs <- errors.Wrapf(err, "loading field keys: %s, %s", job.tkey, job.field)
}
case directiveJobShards:
if err := api.loadShard(ctx, job.tkey, job.shard); err != nil {
errs <- errors.Wrapf(err, "loading shard: %s, %s", job.tkey, job.shard)
}
default:
errs <- errors.Errorf("unsupported job type: %T %[1]v", job)
}
select {
case <-ctx.Done():
return
default:
// continue pulling jobs off the channel
}
}
}
func (api *API) enactDirective(ctx context.Context, fromD, toD *dax.Directive) error {
// enactTables is called before the jobs that run in the worker pool because
// it probably makes sense to apply the schema before trying to load data
// concurrently.
if err := api.enactTables(ctx, fromD, toD); err != nil {
return errors.Wrap(err, "enactTables")
}
// The following types use a shared pool of workers to run each
// directiveJobType.
var wg sync.WaitGroup
// open job channel
jobs := make(chan directiveJobType, api.directiveWorkerPoolSize)
errs := make(chan error)
done := make(chan struct{})
// Spin up n workers in goroutines that pull jobs from the jobs channel.
for i := 0; i < api.directiveWorkerPoolSize; i++ {
wg.Add(1)
go func() {
api.directiveWorker(ctx, jobs, errs)
defer wg.Done()
}()
}
// Wait for the WaitGroup counter to reach 0. When it has, indicate that
// we're done processing all jobs by closing the done channel.
go func() {
wg.Wait()
close(done)
}()
// Run through all the "enact" methods. These push jobs onto the jobs
// channel. Once all the jobs have been queued to the channel, we close the
// jobs channel. This allows the directiveWorkers to exit out of the
// function, which will then decrement the WaitGroup counter.
go func() {
api.pushJobsTableKeys(ctx, jobs, fromD, toD)
api.pushJobsFieldKeys(ctx, jobs, fromD, toD)
api.pushJobsShards(ctx, jobs, fromD, toD)
close(jobs)
}()
// Keep running until we get an error or until the done channel is closed.
// Note: the code is written such that only non-nil errors are pushed to the
// errs channel.
for {
select {
case err := <-errs:
return err
case <-done:
return nil
}
}
}
func (api *API) enactTables(ctx context.Context, fromD, toD *dax.Directive) error {
currentIndexes := api.holder.Indexes()
// Make a list of indexes that currently exist (from).
from := make(dax.TableKeys, 0, len(currentIndexes))
for _, idx := range currentIndexes {
qtid, err := dax.QualifiedTableIDFromKey(idx.Name())
if err != nil {
return errors.Wrap(err, "converting index name to qualified table id")
}
from = append(from, qtid.Key())
}
// TODO sanity check holder against fromD. We're getting existing
// indexes from holder, but in theory fromD should be
// identical. If we have an error in our directive-caching logic
// (it has happened before (just now, in fact!) and we'd be
// foolish to think it won't happen again), or we have schema
// mutations that are not going through the directive path, we
// could potentially catch them here.
// Make a list of tables that are in the directive (to) along with a map of
// tableKey to table (m).
m := make(map[dax.TableKey]*dax.QualifiedTable, len(toD.Tables))
to := make(dax.TableKeys, 0, len(toD.Tables))
for _, t := range toD.Tables {
m[t.Key()] = t
to = append(to, t.Key())
}
sc := newSliceComparer(from, to)
// Remove all indexes that are no longer part of the directive.
for _, tkey := range sc.removed() {
idx := string(tkey)
if err := api.DeleteIndex(ctx, idx); err != nil {
return errors.Wrapf(err, "deleting index: %s", tkey)
}
}
// Put partitions into a map by table.
partitionMap := toD.TranslatePartitionsMap()
// Add all indexes that weren't previously (but now are) a part of the
// directive.
for _, tkey := range sc.added() {
if qtbl, found := m[tkey]; !found {
return errors.Errorf("table '%s' was not in map", tkey)
} else if err := api.createTableAndFields(qtbl, partitionMap[tkey]); err != nil {
return err
}
}
// Check fields on all indexes present in both from and to.
for _, tkey := range sc.same() {
if err := api.enactFieldsForTable(ctx, tkey, fromD, toD); err != nil {
return errors.Wrapf(err, "enacting fields for table: '%s'", tkey)
}
}
return nil
}
func (api *API) enactFieldsForTable(ctx context.Context, tkey dax.TableKey, fromD, toD *dax.Directive) error {
qtid := tkey.QualifiedTableID()
fromT, err := fromD.Table(qtid)
if err != nil {
return errors.Wrap(err, "getting from table")
}
toT, err := toD.Table(qtid)
if err != nil {
return errors.Wrap(err, "getting to table")
}
// Get the index for tkey.
idx := api.holder.Index(string(tkey))
if idx == nil {
return errors.Errorf("index not found: %s", tkey)
}
sc := newSliceComparer(fromT.FieldNames(), toT.FieldNames())
// Add fields new to toT.
for _, fldName := range sc.added() {
if field, found := toT.Field(fldName); !found {
return dax.NewErrFieldDoesNotExist(fldName)
} else if err := createField(idx, field); err != nil {
return errors.Wrapf(err, "creating field: %s/%s", tkey, fldName)
}
}
// Remove fields which don't exist in toT.
for _, fldName := range sc.removed() {
if err := api.DeleteField(ctx, string(tkey), string(fldName)); err != nil {
return errors.Wrapf(err, "deleting field: %s/%s", tkey, fldName)
}
}
// // Update any field options which have changed for existing fields.
// for _, fldName := range sc.same() {
// // handle changed field options??
// }
return nil
}
func (api *API) pushJobsTableKeys(ctx context.Context, jobs chan<- directiveJobType, fromD, toD *dax.Directive) {
toPartitionsMap := toD.TranslatePartitionsMap()
// Get the diff between from/to directive.partitions.
partComp := newPartitionsComparer(fromD.TranslatePartitionsMap(), toPartitionsMap)
// Remove any partitions which are no longer assigned to this worker.
// TODO(tlt): currently, this is just removing the file lock on the
// resource; it's not actually removing the resource from the local
// computer. We should do that.
for tkey, partitions := range partComp.removed() {
qtid := tkey.QualifiedTableID()
for _, partition := range partitions {
api.serverlessStorage.RemoveTableKeyResource(qtid, partition)
}
}
// Loop over the partition map and load from Writelogger.
for tkey, partitions := range partComp.added() {
// Get index in order to find the translate stores (by partition) for
// the table.
idx := api.holder.Index(string(tkey))
if idx == nil {
log.Printf("index not found in holder: %s", tkey)
continue
}
// Update the cached version of translate partitions that we keep on the
// Index.
idx.SetTranslatePartitions(toPartitionsMap[tkey])
for _, partition := range partitions {
jobs <- directiveJobTableKeys{
idx: idx,
tkey: tkey,
partition: partition,
}
}
}
}
func (api *API) loadTableKeys(ctx context.Context, idx *Index, tkey dax.TableKey, partition dax.PartitionNum) error {
qtid := tkey.QualifiedTableID()
resource := api.serverlessStorage.GetTableKeyResource(qtid, partition)
if resource.IsLocked() {
api.logger().Warnf("skipping loadTableKeys (already held) %s %d", tkey, partition)
return nil
}
// load latest snapshot
if rc, err := resource.LoadLatestSnapshot(); err != nil {
return errors.Wrap(err, "loading table key snapshot")
} else if rc != nil {
defer rc.Close()
if err := api.TranslateIndexDB(ctx, string(tkey), int(partition), rc); err != nil {
return errors.Wrap(err, "restoring table keys")
}
}
// define write log loading in a function since we have to do it
// before and after locking
loadWriteLog := func() error {
writelog, err := resource.LoadWriteLog()
if err != nil {
return errors.Wrap(err, "getting write log reader for table keys")
}
if writelog == nil {
return nil
}
reader := storage.NewTableKeyReader(qtid, partition, writelog)
defer reader.Close()
store := idx.TranslateStore(int(partition))
for msg, err := reader.Read(); err != io.EOF; msg, err = reader.Read() {
if err != nil {
return errors.Wrap(err, "reading from log reader")
}
for key, id := range msg.StringToID {
if err := store.ForceSet(id, key); err != nil {
return errors.Wrapf(err, "forcing set id, key: %d, %s", id, key)
}
}
}
return nil
}
// 1st write log load
if err := loadWriteLog(); err != nil {
return err
}
// acquire lock on this partition's keys
if err := resource.Lock(); err != nil {
return errors.Wrap(err, "locking table key partition")
}
// reload writelog in case of changes between last load and
// lock. The resource object takes care of only loading new data.
return loadWriteLog()
}
func (api *API) pushJobsFieldKeys(ctx context.Context, jobs chan<- directiveJobType, fromD, toD *dax.Directive) {
// Get the diff between from/to directive.fields.
fieldComp := newFieldsComparer(fromD.TranslateFieldsMap(), toD.TranslateFieldsMap())
// Remove any field keys which are no longer assigned to this worker.
// TODO(tlt): currently, this is just removing the file lock on the
// resource; it's not actually removing the resource from the local
// computer. We should do that.
for tkey, fields := range fieldComp.removed() {
qtid := tkey.QualifiedTableID()
for _, field := range fields {
api.serverlessStorage.RemoveFieldKeyResource(qtid, field)
}
}
// Loop over the field map and load from Writelogger.
for tkey, fields := range fieldComp.added() {
for _, field := range fields {
jobs <- directiveJobFieldKeys{
tkey: tkey,
field: field,
}
}
}
}
func (api *API) loadFieldKeys(ctx context.Context, tkey dax.TableKey, field dax.FieldName) error {
qtid := tkey.QualifiedTableID()
resource := api.serverlessStorage.GetFieldKeyResource(qtid, field)
if resource.IsLocked() {
api.logger().Warnf("skipping loadFieldKeys (already held) %s %s", tkey, field)
return nil
}
// load latest snapshot
if rc, err := resource.LoadLatestSnapshot(); err != nil {
return errors.Wrap(err, "loading field key snapshot")
} else if rc != nil {
defer rc.Close()
if err := api.TranslateFieldDB(ctx, string(tkey), string(field), rc); err != nil {
return errors.Wrap(err, "restoring field keys")
}
}
// define write log loading in a function since we have to do it
// before and after locking
loadWriteLog := func() error {
writelog, err := resource.LoadWriteLog()
if err != nil {
return errors.Wrap(err, "getting write log reader for field keys")
}
if writelog == nil {
return nil
}
reader := storage.NewFieldKeyReader(qtid, field, writelog)
defer reader.Close()
// Get field in order to find the translate store.
fld := api.holder.Field(string(tkey), string(field))
if fld == nil {
log.Printf("field not found in holder: %s", field)
return nil
}
store := fld.TranslateStore()
for msg, err := reader.Read(); err != io.EOF; msg, err = reader.Read() {
if err != nil {
return errors.Wrap(err, "reading from log reader")
}
for key, id := range msg.StringToID {
if err := store.ForceSet(id, key); err != nil {
return errors.Wrapf(err, "forcing set id, key: %d, %s", id, key)
}
}
}
return nil
}
// 1st write log load
if err := loadWriteLog(); err != nil {
return err
}
// acquire lock on this partition's keys
if err := resource.Lock(); err != nil {
return errors.Wrap(err, "locking field key partition")
}
// reload writelog in case of changes between last load and
// lock. The resource object takes care of only loading new data.
return loadWriteLog()
}
func (api *API) pushJobsShards(ctx context.Context, jobs chan<- directiveJobType, fromD, toD *dax.Directive) {
// Put shards into a map by table.
shardMap := toD.ComputeShardsMap()
// Get the diff between from/to directive shards.
shardComp := newShardsComparer(fromD.ComputeShardsMap(), shardMap)
// Remove any shards which are no longer assigned to this worker.
// TODO(tlt): currently, this is just removing the file lock on the
// resource; it's not actually removing the resource from the local
// computer. We should do that.
for tkey, shards := range shardComp.removed() {
qtid := tkey.QualifiedTableID()
for _, shard := range shards {
partition := dax.PartitionNum(disco.ShardToShardPartition(string(tkey), uint64(shard), disco.DefaultPartitionN))
api.serverlessStorage.RemoveShardResource(qtid, partition, shard)
}
}
// Loop over the shard map and load from Writelogger.
for tkey, shards := range shardComp.added() {
for _, shard := range shards {
jobs <- directiveJobShards{
tkey: tkey,
shard: shard,
}
}
}
}
func (api *API) loadShard(ctx context.Context, tkey dax.TableKey, shard dax.ShardNum) error {
qtid := tkey.QualifiedTableID()
partition := dax.PartitionNum(disco.ShardToShardPartition(string(tkey), uint64(shard), disco.DefaultPartitionN))
resource := api.serverlessStorage.GetShardResource(qtid, partition, shard)
if resource.IsLocked() {
api.logger().Warnf("skipping loadShard (already held) %s %d", tkey, shard)
return nil
}
if rc, err := resource.LoadLatestSnapshot(); err != nil {
return errors.Wrap(err, "reading latest snapshot for shard")
} else if rc != nil {
defer rc.Close()
if err := api.RestoreShard(ctx, string(tkey), uint64(shard), rc); err != nil {
return errors.Wrap(err, "restoring shard data")
}
}
// define write log loading in a func because we do it twice.
loadWriteLog := func() error {
writelog, err := resource.LoadWriteLog()
if err != nil {
return errors.Wrap(err, "")
}
if writelog == nil {
return nil
}
reader := storage.NewShardReader(qtid, partition, shard, writelog)
defer reader.Close()
for logMsg, err := reader.Read(); err != io.EOF; logMsg, err = reader.Read() {
if err != nil {
return errors.Wrap(err, "reading from log reader")
}
switch msg := logMsg.(type) {
case *computer.ImportRoaringMessage:
req := &ImportRoaringRequest{
Clear: msg.Clear,
Action: msg.Action,
Block: msg.Block,
Views: msg.Views,
UpdateExistence: msg.UpdateExistence,
SuppressLog: true,
}
if err := api.ImportRoaring(ctx, msg.Table, msg.Field, msg.Shard, true, req); err != nil {
return errors.Wrapf(err, "import roaring, table: %s, field: %s, shard: %d", msg.Table, msg.Field, msg.Shard)
}
case *computer.ImportMessage:
req := &ImportRequest{
Index: msg.Table,
Field: msg.Field,
Shard: msg.Shard,
RowIDs: msg.RowIDs,
ColumnIDs: msg.ColumnIDs,
RowKeys: msg.RowKeys,
ColumnKeys: msg.ColumnKeys,
Timestamps: msg.Timestamps,
Clear: msg.Clear,
}
qcx := api.Txf().NewQcx()
defer qcx.Abort()
opts := []ImportOption{
OptImportOptionsClear(msg.Clear),
OptImportOptionsIgnoreKeyCheck(msg.IgnoreKeyCheck),
OptImportOptionsPresorted(msg.Presorted),
OptImportOptionsSuppressLog(true),
}
if err := api.Import(ctx, qcx, req, opts...); err != nil {
return errors.Wrapf(err, "import, table: %s, field: %s, shard: %d", msg.Table, msg.Field, msg.Shard)
}
case *computer.ImportValueMessage:
req := &ImportValueRequest{
Index: msg.Table,
Field: msg.Field,
Shard: msg.Shard,
ColumnIDs: msg.ColumnIDs,
ColumnKeys: msg.ColumnKeys,
Values: msg.Values,
FloatValues: msg.FloatValues,
TimestampValues: msg.TimestampValues,
StringValues: msg.StringValues,
Clear: msg.Clear,
}
qcx := api.Txf().NewQcx()
defer qcx.Abort()
opts := []ImportOption{
OptImportOptionsClear(msg.Clear),
OptImportOptionsIgnoreKeyCheck(msg.IgnoreKeyCheck),
OptImportOptionsPresorted(msg.Presorted),
OptImportOptionsSuppressLog(true),
}
if err := api.ImportValue(ctx, qcx, req, opts...); err != nil {
return errors.Wrapf(err, "import value, table: %s, field: %s, shard: %d", msg.Table, msg.Field, msg.Shard)
}
case *computer.ImportRoaringShardMessage:
req := &ImportRoaringShardRequest{
Remote: true,
Views: make([]RoaringUpdate, len(msg.Views)),
SuppressLog: true,
}
for i, view := range msg.Views {
req.Views[i] = RoaringUpdate{
Field: view.Field,
View: view.View,
Clear: view.Clear,
Set: view.Set,
ClearRecords: view.ClearRecords,
}
}
if err := api.ImportRoaringShard(ctx, msg.Table, msg.Shard, req); err != nil {
return errors.Wrapf(err, "import roaring shard table: %s, shard: %d", msg.Table, msg.Shard)
}
}
}
return nil
}
// 1st write log load
if err := loadWriteLog(); err != nil {
return err
}
// acquire lock on this partition's keys
if err := resource.Lock(); err != nil {
return errors.Wrap(err, "locking field key partition")
}
// reload writelog in case of changes between last load and
// lock. The resource object takes care of only loading new data.
return loadWriteLog()
}
//////////////////////////////////////////////////////////////
// sliceComparer is used to compare the differences between two slices of comparables.
type sliceComparer[K comparable] struct {
from []K
to []K
}
func newSliceComparer[K comparable](from []K, to []K) *sliceComparer[K] {
return &sliceComparer[K]{
from: from,
to: to,
}
}
// added returns the items which are present in `to` but not in `from`.
func (s *sliceComparer[K]) added() []K {
return thingsAdded(s.from, s.to)
}
// removed returns the items which are present in `from` but not in `to`.
func (s *sliceComparer[K]) removed() []K {
return thingsAdded(s.to, s.from)
}
// same returns the items which are in both `to` and `from`.
func (s *sliceComparer[K]) same() []K {
var same []K
for _, fromThing := range s.from {
for _, toThing := range s.to {
if fromThing == toThing {
same = append(same, fromThing)
break
}
}
}
return same
}
// thingsAdded returns the comparable things which are present in `to` but not
// in `from`.
func thingsAdded[K comparable](from []K, to []K) []K {
var added []K
for i := range to {
var found bool
for j := range from {
if from[j] == to[i] {
found = true
break
}
}
if !found {
added = append(added, to[i])
}
}
return added
}
// partitionsComparer is used to compare the differences between two maps of
// table:[]partition.
type partitionsComparer struct {
from map[dax.TableKey]dax.PartitionNums
to map[dax.TableKey]dax.PartitionNums
}
func newPartitionsComparer(from map[dax.TableKey]dax.PartitionNums, to map[dax.TableKey]dax.PartitionNums) *partitionsComparer {
return &partitionsComparer{
from: from,
to: to,
}
}
// added returns the partitions which are present in `to` but not in `from`. The
// results remain in the format of a map of table:[]partition.
func (p *partitionsComparer) added() map[dax.TableKey]dax.PartitionNums {
return partitionsAdded(p.from, p.to)
}
// removed returns the partitions which are present in `from` but not in `to`.
// The results remain in the format of a map of table:[]partition.
func (p *partitionsComparer) removed() map[dax.TableKey]dax.PartitionNums {
return partitionsAdded(p.to, p.from)
}
// partitionsAdded returns the partitions which are present in `to` but not in `from`.
func partitionsAdded(from map[dax.TableKey]dax.PartitionNums, to map[dax.TableKey]dax.PartitionNums) map[dax.TableKey]dax.PartitionNums {
if from == nil {
return to
}
added := make(map[dax.TableKey]dax.PartitionNums)
for tt, tps := range to {
fps, found := from[tt]
if !found {
added[tt] = tps
continue
}
addedPartitions := dax.PartitionNums{}
for i := range tps {
var found bool
for j := range fps {
if fps[j] == tps[i] {
found = true
break
}
}
if !found {
addedPartitions = append(addedPartitions, tps[i])
}
}
if len(addedPartitions) > 0 {
added[tt] = addedPartitions
}
}
return added
}
// fieldsComparer is used to compare the differences between two maps of
// table:[]fieldVersion.
type fieldsComparer struct {
from map[dax.TableKey][]dax.FieldName
to map[dax.TableKey][]dax.FieldName
}
func newFieldsComparer(from map[dax.TableKey][]dax.FieldName, to map[dax.TableKey][]dax.FieldName) *fieldsComparer {
return &fieldsComparer{
from: from,
to: to,
}
}
// added returns the fields which are present in `to` but not in `from`. The
// results remain in the format of a map of table:[]field.
func (f *fieldsComparer) added() map[dax.TableKey][]dax.FieldName {
return fieldsAdded(f.from, f.to)
}
// removed returns the fields which are present in `from` but not in `to`.
// The results remain in the format of a map of table:[]field.
func (f *fieldsComparer) removed() map[dax.TableKey][]dax.FieldName {
return fieldsAdded(f.to, f.from)
}
// fieldsAdded returns the fields which are present in `to` but not in `from`.
func fieldsAdded(from map[dax.TableKey][]dax.FieldName, to map[dax.TableKey][]dax.FieldName) map[dax.TableKey][]dax.FieldName {
if from == nil {
return to
}
added := make(map[dax.TableKey][]dax.FieldName)
for tt, tps := range to {
fps, found := from[tt]
if !found {
added[tt] = tps
continue
}
addedFieldVersions := []dax.FieldName{}
for i := range tps {
var found bool
for j := range fps {
if fps[j] == tps[i] {
found = true
break
}
}
if !found {
addedFieldVersions = append(addedFieldVersions, tps[i])
}
}
if len(addedFieldVersions) > 0 {
added[tt] = addedFieldVersions
}
}
return added
}
// shardsComparer is used to compare the differences between two maps of
// table:[]shardV.
type shardsComparer struct {
from map[dax.TableKey]dax.ShardNums
to map[dax.TableKey]dax.ShardNums
}
func newShardsComparer(from map[dax.TableKey]dax.ShardNums, to map[dax.TableKey]dax.ShardNums) *shardsComparer {
return &shardsComparer{
from: from,
to: to,
}
}
// added returns the shards which are present in `to` but not in `from`. The
// results remain in the format of a map of table:[]shard.
func (s *shardsComparer) added() map[dax.TableKey]dax.ShardNums {
return shardsAdded(s.from, s.to)
}
// removed returns the shards which are present in `from` but not in `to`. The
// results remain in the format of a map of table:[]shard.
func (s *shardsComparer) removed() map[dax.TableKey]dax.ShardNums {
return shardsAdded(s.to, s.from)
}
// shardsAdded returns the shards which are present in `to` but not in `from`.
func shardsAdded(from map[dax.TableKey]dax.ShardNums, to map[dax.TableKey]dax.ShardNums) map[dax.TableKey]dax.ShardNums {
if from == nil {
return to
}
added := make(map[dax.TableKey]dax.ShardNums)
for tt, tss := range to {
fss, found := from[tt]
if !found {
added[tt] = tss
continue
}
addedShards := dax.ShardNums{}
for i := range tss {
var found bool
for j := range fss {
if fss[j] == tss[i] {
found = true
break
}
}
if !found {
addedShards = append(addedShards, tss[i])
}
}
if len(addedShards) > 0 {
added[tt] = addedShards
}
}
return added
}
// createTableAndFields creates the FeatureBase Tables and Fields provided in
// the dax.Directive format.
func (api *API) createTableAndFields(tbl *dax.QualifiedTable, partitions dax.PartitionNums) error {
cim := &CreateIndexMessage{
Index: string(tbl.Key()),
CreatedAt: 0,
Meta: IndexOptions{
Keys: tbl.StringKeys(),
TrackExistence: true,
},
}
// Create the index in etcd as the system of record.
if err := api.holder.persistIndex(context.Background(), cim); err != nil {
return errors.Wrap(err, "persisting index")
}
idx, err := api.holder.createIndexWithPartitions(cim, partitions)
if err != nil {
return errors.Wrapf(err, "adding index: %s", tbl.Name)
}
// Add the fields
for _, fld := range tbl.Fields {
if fld.IsPrimaryKey() {
continue
}
if err := createField(idx, fld); err != nil {
return errors.Wrapf(err, "creating field: %s", fld.Name)
}
}
return nil
}
// createField creates a FeatureBase Field in the provided FeatureBase Index
// based on the provided field's type.
func createField(idx *Index, fld *dax.Field) error {
opts, err := FieldOptionsFromField(fld)
if err != nil {
return errors.Wrapf(err, "creating field options from field: %s", fld.Name)
}
if _, err := idx.createNullableField(string(fld.Name), "", opts...); err != nil {
return errors.Wrapf(err, "creating field on index: %s", fld.Name)
}
return nil
}

View file

@ -1,25 +0,0 @@
package pilosa
import (
"testing"
"github.com/stretchr/testify/assert"
)
func TestThingsAddedGeneric(t *testing.T) {
from := []string{"a", "b", "c"}
to := []string{"b", "c", "d"}
added := thingsAdded(from, to)
assert.Equal(t, added, []string{"d"})
}
func TestSliceComparer(t *testing.T) {
from := []string{"a", "b", "c"}
to := []string{"b", "c", "d"}
sc := newSliceComparer(from, to)
added := sc.added()
assert.Equal(t, added, []string{"d"})
}

View file

@ -1,97 +0,0 @@
package pilosa_test
import (
"context"
"testing"
pilosa "github.com/featurebasedb/featurebase/v3"
"github.com/featurebasedb/featurebase/v3/dax"
daxtest "github.com/featurebasedb/featurebase/v3/dax/test"
"github.com/featurebasedb/featurebase/v3/test"
"github.com/stretchr/testify/assert"
)
// Ensure holder can handle an incoming directive.
func TestAPI_Directive(t *testing.T) {
c := test.MustRunCluster(t, 1)
defer c.Close()
api := c.GetPrimary().API
ctx := context.Background()
qdbid := dax.NewQualifiedDatabaseID("acme", "db1")
tbl1 := daxtest.TestQualifiedTableWithID(t, qdbid, "1", "tbl1", 12, false)
tbl2 := daxtest.TestQualifiedTableWithID(t, qdbid, "2", "tbl2", 12, false)
tbl3 := daxtest.TestQualifiedTableWithID(t, qdbid, "3", "tbl3", 12, false)
t.Run("Schema", func(t *testing.T) {
// Empty directive (and empty holder).
{
d := &dax.Directive{
Method: dax.DirectiveMethodFull,
Version: 1,
}
err := api.ApplyDirective(ctx, d)
assert.NoError(t, err)
assertTablesMatch(t, []string{}, api.Holder().Indexes())
}
// Add a new table.
{
d := &dax.Directive{
Method: dax.DirectiveMethodFull,
Tables: []*dax.QualifiedTable{
tbl1,
},
Version: 2,
}
err := api.ApplyDirective(ctx, d)
assert.NoError(t, err)
assertTablesMatch(t, []string{"tbl__acme__db1__1"}, api.Holder().Indexes())
}
// Add a new table, and keep the existing table.
{
d := &dax.Directive{
Method: dax.DirectiveMethodFull,
Tables: []*dax.QualifiedTable{
tbl1,
tbl2,
},
Version: 3,
}
err := api.ApplyDirective(ctx, d)
assert.NoError(t, err)
assertTablesMatch(t, []string{"tbl__acme__db1__1", "tbl__acme__db1__2"}, api.Holder().Indexes())
}
// Add a new table and remove one of the existing tables.
{
d := &dax.Directive{
Method: dax.DirectiveMethodFull,
Tables: []*dax.QualifiedTable{
tbl2,
tbl3,
},
Version: 4,
}
err := api.ApplyDirective(ctx, d)
assert.NoError(t, err)
assertTablesMatch(t, []string{"tbl__acme__db1__2", "tbl__acme__db1__3"}, api.Holder().Indexes())
}
})
}
// assertTablesMatch is a helper function which asserts that the list of index
// names in `actual` match those provided in `expected`.
func assertTablesMatch(t *testing.T, expected []string, actual []*pilosa.Index) {
t.Helper()
act := make([]string, len(actual))
for i := range actual {
act[i] = actual[i].Name()
}
assert.ElementsMatch(t, expected, act)
}

File diff suppressed because it is too large Load diff

View file

@ -1,57 +0,0 @@
// Code generated by "stringer -type=apiMethod"; DO NOT EDIT.
package pilosa
import "strconv"
func _() {
// An "invalid array index" compiler error signifies that the constant values have changed.
// Re-run the stringer command to generate them again.
var x [1]struct{}
_ = x[apiClusterMessage-0]
_ = x[apiCreateField-1]
_ = x[apiCreateIndex-2]
_ = x[apiDeleteField-3]
_ = x[apiDeleteAvailableShard-4]
_ = x[apiDeleteIndex-5]
_ = x[apiDeleteView-6]
_ = x[apiExportCSV-7]
_ = x[apiFragmentBlockData-8]
_ = x[apiFragmentBlocks-9]
_ = x[apiFragmentData-10]
_ = x[apiTranslateData-11]
_ = x[apiFieldTranslateData-12]
_ = x[apiField-13]
_ = x[apiImport-14]
_ = x[apiImportValue-15]
_ = x[apiIndex-16]
_ = x[apiQuery-17]
_ = x[apiRecalculateCaches-18]
_ = x[apiSchema-19]
_ = x[apiShardNodes-20]
_ = x[apiState-21]
_ = x[apiViews-22]
_ = x[apiApplySchema-23]
_ = x[apiStartTransaction-24]
_ = x[apiFinishTransaction-25]
_ = x[apiTransactions-26]
_ = x[apiGetTransaction-27]
_ = x[apiActiveQueries-28]
_ = x[apiPastQueries-29]
_ = x[apiIDReserve-30]
_ = x[apiIDCommit-31]
_ = x[apiIDReset-32]
_ = x[apiPartitionNodes-33]
_ = x[apiMutexCheck-34]
}
const _apiMethod_name = "apiClusterMessageapiCreateFieldapiCreateIndexapiDeleteFieldapiDeleteAvailableShardapiDeleteIndexapiDeleteViewapiExportCSVapiFragmentBlockDataapiFragmentBlocksapiFragmentDataapiTranslateDataapiFieldTranslateDataapiFieldapiImportapiImportValueapiIndexapiQueryapiRecalculateCachesapiSchemaapiShardNodesapiStateapiViewsapiApplySchemaapiStartTransactionapiFinishTransactionapiTransactionsapiGetTransactionapiActiveQueriesapiPastQueriesapiIDReserveapiIDCommitapiIDResetapiPartitionNodesapiMutexCheck"
var _apiMethod_index = [...]uint16{0, 17, 31, 45, 59, 82, 96, 109, 121, 141, 158, 173, 189, 210, 218, 227, 241, 249, 257, 277, 286, 299, 307, 315, 329, 348, 368, 383, 400, 416, 430, 442, 453, 463, 480, 493}
func (i apiMethod) String() string {
if i < 0 || i >= apiMethod(len(_apiMethod_index)-1) {
return "apiMethod(" + strconv.FormatInt(int64(i), 10) + ")"
}
return _apiMethod_name[_apiMethod_index[i]:_apiMethod_index[i+1]]
}

686
apply.go
View file

@ -1,686 +0,0 @@
// Copyright 2021 Molecula Corp. All rights reserved.
package pilosa
import (
"context"
"fmt"
"io"
"os"
"path/filepath"
"sort"
"strings"
"sync"
"github.com/apache/arrow/go/v10/arrow"
"github.com/apache/arrow/go/v10/arrow/array"
"github.com/apache/arrow/go/v10/arrow/memory"
"github.com/featurebasedb/featurebase/v3/pql"
"github.com/featurebasedb/featurebase/v3/tracing"
"github.com/featurebasedb/featurebase/v3/vprint"
"github.com/gomem/gomem/pkg/dataframe"
"github.com/pkg/errors"
ivy "robpike.io/ivy/arrow"
config "robpike.io/ivy/config"
"robpike.io/ivy/exec"
"robpike.io/ivy/parse"
"robpike.io/ivy/run"
"robpike.io/ivy/scan"
"robpike.io/ivy/value"
)
type (
ApplyResult *arrow.Column
)
func runIvyString(context value.Context, str string) (ok bool, err error) {
defer func() {
if r := recover(); r != nil {
err = r.(value.Error)
}
}()
scanner := scan.New(context, "<args>", strings.NewReader(str))
parser := parse.NewParser("<args>", scanner, context)
ok = run.Run(parser, context, false)
return
}
// Possibly combine all arrays together then apply some interesting
// computation at the end?
func IvyReduce(reduceCode string, opCode string, opt *ExecOptions) (func(ctx context.Context, prev, v interface{}) interface{}, func() (*dataframe.DataFrame, error)) {
var accumulator value.Value
mu := &sync.Mutex{}
concat := value.BinaryOps[opCode]
conf := getDefaultConfig()
ctxIvy := exec.NewContext(&conf)
// concat returned results at coordinating node.
reduceFn := func(ctx context.Context, prev, v interface{}) interface{} {
if v == nil {
return prev
}
if accumulator == nil {
switch val := v.(type) {
case *dataframe.DataFrame:
col := val.ColumnAt(0)
resolver := dataframe.NewChunkResolver(col)
accumulator = value.NewArrowVector(col, &conf, &resolver)
case value.Value:
accumulator = v.(value.Value)
default:
return errors.New(fmt.Sprintf("ivy reduction failed first unexpected type %T", v))
}
return nil
}
switch val := v.(type) {
case *dataframe.DataFrame:
col := val.ColumnAt(0)
resolver := dataframe.NewChunkResolver(col)
x := value.NewArrowVector(col, &conf, &resolver)
mu.Lock() // i'm being overyerly cautious..need to confirm this can be concurrent
accumulator = concat.EvalBinary(ctxIvy, accumulator, x)
mu.Unlock()
case value.Value:
mu.Lock()
accumulator = concat.EvalBinary(ctxIvy, accumulator, val)
mu.Unlock()
default:
return errors.New(fmt.Sprintf("ivy reduction failed unexpected type %T", v))
}
return nil
}
tablerFn := func() (*dataframe.DataFrame, error) {
pool := memory.NewGoAllocator() // TODO(twg) 2022/09/01 singledton?
if opt.Remote {
col := value.ToArrowColumn(accumulator, pool)
return dataframe.NewDataFrameFromColumns(pool, []arrow.Column{*col})
}
// only actually reduce on the initiating node i hate the network
// over head but oh well
ctxIvy.AssignGlobal("_", accumulator)
ok, err := runIvyString(ctxIvy, reduceCode)
if err != nil {
return nil, err
}
if ok {
v := ctxIvy.Global("_")
if v == nil {
return nil, errors.New("ivy reduction no result ")
}
col := value.ToArrowColumn(ctxIvy.Global("_"), pool)
return dataframe.NewDataFrameFromColumns(pool, []arrow.Column{*col})
}
return nil, errors.New("ivy reduction failed ")
}
return reduceFn, tablerFn
}
// executeApply executes a Apply() call.
func (e *executor) executeApply(ctx context.Context, qcx *Qcx, index string, c *pql.Call, shards []uint64, opt *ExecOptions) (*dataframe.DataFrame, error) {
if !e.dataframeEnabled {
return nil, errors.New("Dataframe support not enabled")
}
span, ctx := tracing.StartSpanFromContext(ctx, "Executor.executeMax")
defer span.Finish()
if _, err := c.FirstStringArg("_ivy"); err != nil {
return nil, errors.Wrap(err, " no ivy program supplied")
}
if len(c.Children) > 1 {
return nil, errors.New("Apply() only accepts a single bitmap input filter")
}
// Execute calls in bulk on each remote node and merge.
mapFn := func(ctx context.Context, shard uint64, mopt *mapOptions) (_ interface{}, err error) {
return e.executeApplyShard(ctx, qcx, index, c, shard)
}
ivyReduce, ok, err := c.StringArg("_ivyReduce")
if err != nil {
return nil, err
}
reduceFn, tablerFn := IvyReduce("_", ",", opt)
if ok {
reduceFn, tablerFn = IvyReduce(ivyReduce, ",", opt)
}
_, err = e.mapReduce(ctx, index, shards, c, opt, mapFn, reduceFn)
if err != nil {
return nil, err
}
return tablerFn()
}
func getDefaultConfig() config.Config {
maxbits := uint(1e9) // "maximum size of an integer, in bits; 0 means no limit")
maxdigits := uint(1e4) // "above this many `digits`, integers print as floating point; 0 disables")
maxstack := uint(100000)
origin := 1 // "set index origin to `n` (must be 0 or 1)")
prompt := "" // flag.String("prompt", "", "command `prompt`")
format := ""
// debugFlag := "" // flag.String("debug", "", "comma-separated `names` of debug settings to enable")
conf := config.Config{}
conf.SetFormat(format)
conf.SetMaxBits(maxbits)
conf.SetMaxDigits(maxdigits)
conf.SetMaxStack(maxstack)
conf.SetOrigin(origin)
conf.SetPrompt(prompt)
conf.SetOutput(io.Discard)
conf.SetErrOutput(io.Discard)
conf.SetEmbedded(true) // needed to propagate panic
return conf
}
func filterDataframe(resolver dataframe.Resolver, pool memory.Allocator, filter []int64) (*dataframe.IndexResolver, error) {
if resolver.NumRows() == 0 {
return nil, errors.New("No data")
}
indexResolver := dataframe.NewIndexResolver(len(filter), uint32(ShardWidth-1))
for i, id := range filter {
if int(id) >= resolver.NumRows() {
continue
}
c, o := resolver.Resolve(int(id))
indexResolver.Set(i, c, o)
}
return indexResolver, nil
}
func (e *executor) executeApplyShard(ctx context.Context, qcx *Qcx, index string, c *pql.Call, shard uint64) (value.Value, error) {
span, _ := tracing.StartSpanFromContext(ctx, "Executor.executeApplyShard")
defer span.Finish()
ivyProgram, ok, err := c.StringArg("_ivy")
if err != nil || !ok {
return nil, errors.Wrap(err, "finding ivy program")
}
var filter *Row
if len(c.Children) == 1 {
row, err := e.executeBitmapCallShard(ctx, qcx, index, c.Children[0], shard)
if err != nil {
return nil, err
}
filter = row
if !filter.Any() {
// no need to actuall run the query for its not operating against any values
return value.NewVector([]value.Value{}), nil
}
}
//
pool := memory.NewGoAllocator() // TODO(twg) 2022/09/01 singledton?
ids := filter.ShardColumns() // needs to be shard columns
// Fetch index.
idx := e.Holder.Index(index)
if idx == nil {
return nil, newNotFoundError(ErrIndexNotFound, index)
}
fname := idx.GetDataFramePath(shard)
if !e.dataFrameExists(fname) {
return value.NewVector([]value.Value{}), nil
}
table, err := e.getDataTable(ctx, fname, pool)
if err != nil {
return nil, err
}
defer table.Release()
df, err := dataframe.NewDataFrameFromTable(pool, table)
if err != nil {
return nil, err
}
p := dataframe.NewChunkResolver(df.ColumnAt(0))
var resolver dataframe.Resolver
resolver = &p
if filter != nil {
if len(ids) == 0 {
return value.NewVector([]value.Value{}), nil
}
resolver, err = filterDataframe(resolver, pool, ids)
if err != nil {
return nil, err
}
}
conf := getDefaultConfig()
context, err := ivy.RunArrow(dataframe.NewTableFacade(df), ivyProgram, conf, resolver)
if err != nil {
return nil, fmt.Errorf("ivy map error: %w", err)
}
return context.Global("_"), nil
}
// ///////////////////////////////////////////////////////
// all the ingest supporting functions
// ///////////////////////////////////////////////////////
func NewShardFile(ctx context.Context, name string, mem memory.Allocator, e *executor) (*ShardFile, error) {
if !e.dataFrameExists(name) {
return &ShardFile{dest: name, executor: e, strings: make(map[key][]string)}, nil
}
// else read in existing
table, err := e.getDataTable(ctx, name, mem)
if err != nil {
return nil, err
}
return &ShardFile{table: table, schema: table.Schema(), dest: name, executor: e, strings: make(map[key][]string)}, nil
}
type NameType struct {
Name string
DataType arrow.DataType
}
type ChangesetRequest struct {
ShardIds []int64 // only shardwidth bits to provide 0 indexing inside shard file
Columns []interface{}
SimpleSchema []NameType
}
// TODO(twg) 2022/09/30 Needs a refactor
func cast(v interface{}) arrow.DataType {
switch v.(type) {
case *arrow.Int64Type:
return arrow.PrimitiveTypes.Int64
case int64:
return arrow.PrimitiveTypes.Int64
case *arrow.Float64Type:
return arrow.PrimitiveTypes.Float64
case float64:
return arrow.PrimitiveTypes.Float64
case *arrow.StringType:
return arrow.BinaryTypes.String
default:
vprint.VV("%T .... %v", v, v)
}
return arrow.PrimitiveTypes.Int64
}
func (cr *ChangesetRequest) ArrowSchema() *arrow.Schema {
fields := make([]arrow.Field, len(cr.SimpleSchema))
for i := range cr.SimpleSchema {
fields[i] = arrow.Field{Name: cr.SimpleSchema[i].Name, Type: cast(cr.SimpleSchema[i].DataType)}
}
return arrow.NewSchema(fields, nil)
}
type key struct {
col int
chunk int
}
type ShardFile struct {
table arrow.Table
schema *arrow.Schema
beforeRows int64
added int64
columns []interface{}
dest string
executor *executor
strings map[key][]string
}
func compareSchema(s1, s2 *arrow.Schema) bool {
if s1 == nil || s2 == nil {
return false
}
if len(s1.Fields()) != len(s2.Fields()) {
return false
}
for i := 0; i < len(s1.Fields()); i++ {
f1 := s1.Field(i)
f2 := s2.Field(i)
if f1.Name != f2.Name {
return false
}
if f1.Type != f2.Type {
return false
}
}
return true
}
func (sf *ShardFile) EnsureSchema(cs *ChangesetRequest) error {
schema := cs.ArrowSchema()
if sf.schema == nil {
sf.schema = schema
} else {
if !compareSchema(sf.schema, schema) {
vprint.VV("incomeing schema", schema)
vprint.VV("existing schema", sf.schema)
return errors.New("dataframe schema's don't match")
}
}
sf.columns = make([]interface{}, len(sf.schema.Fields()))
return nil
}
func (sf *ShardFile) buildAppenders(maxid int64) {
if sf.table != nil {
sf.beforeRows = sf.table.NumRows()
}
if maxid < sf.beforeRows {
// no need to add new rows
return
}
newSize := maxid - sf.beforeRows + 1
for i := 0; i < len(sf.schema.Fields()); i++ {
switch sf.schema.Field(i).Type {
case arrow.PrimitiveTypes.Int64:
sf.columns[i] = make([]int64, newSize)
case arrow.PrimitiveTypes.Float64:
sf.columns[i] = make([]float64, newSize)
case arrow.BinaryTypes.String:
sf.columns[i] = make([]string, newSize)
}
}
sf.added = newSize
}
// the row offset must be reset to 0 for the slices being appended
func (sf *ShardFile) SetIntValue(col int, row int64, val int64) {
v := sf.columns[col].([]int64)
v[row-sf.beforeRows] = val
}
func (sf *ShardFile) SetFloatValue(col int, row int64, val float64) {
v := sf.columns[col].([]float64)
v[row-sf.beforeRows] = val
}
func (sf *ShardFile) SetStringValue(col int, row int64, val string) {
v := sf.columns[col].([]string)
v[row-sf.beforeRows] = val
}
func (sf *ShardFile) Process(cs *ChangesetRequest) error {
err := sf.process(cs)
if err != nil {
return err
}
rtemp := sf.dest + ".temp"
err = sf.Save(rtemp)
if err != nil {
return err
}
return os.Rename(rtemp+sf.executor.TableExtension(), sf.dest+sf.executor.TableExtension())
}
func (sf *ShardFile) LoadBlobs() error {
for col := 0; col < len(sf.schema.Fields()); col++ {
column := sf.table.Column(col)
switch column.DataType() {
case arrow.BinaryTypes.String:
for i, chunk := range column.Data().Chunks() {
stringData := chunk.(*array.String)
k := key{col: col, chunk: i}
for j := 0; j < stringData.Len(); j++ {
v := stringData.Value(j)
sf.strings[k] = append(sf.strings[k], v)
}
}
}
}
return nil
}
func (sf *ShardFile) ReplaceString(col, chunk, l int, s string) {
sf.strings[key{col: col, chunk: chunk}][l] = s
}
func (sf *ShardFile) process(cs *ChangesetRequest) error {
offset := 0
if sf.table != nil {
// need to load blobs prior
sf.LoadBlobs()
column := sf.table.Column(0)
resolver := dataframe.NewChunkResolver(column)
for i, rowid := range cs.ShardIds {
offset = i
if rowid >= sf.table.NumRows() {
break
}
chunk, l := resolver.Resolve(int(rowid))
for col := 0; col < len(sf.schema.Fields()); col++ {
column := sf.table.Column(col)
switch column.DataType() {
case arrow.PrimitiveTypes.Int64:
v := column.Data().Chunk(chunk).(*array.Int64).Int64Values()
v[l] = cs.Columns[col].([]int64)[i]
case arrow.PrimitiveTypes.Float64:
v := column.Data().Chunk(chunk).(*array.Float64).Float64Values()
v[l] = cs.Columns[col].([]float64)[i]
case arrow.BinaryTypes.String:
// TODO(twg) 2023/01/09 How to update existing?
new := cs.Columns[col].([]string)[i]
sf.ReplaceString(col, chunk, l, new)
default:
panic(fmt.Sprintf("Unknown Type %v", column.DataType()))
}
}
}
}
max := cs.ShardIds[len(cs.ShardIds)-1]
sf.buildAppenders(max)
// need to check if only replace and no apend
if sf.added > 0 {
for i, rowid := range cs.ShardIds[offset:] {
i += offset
for col := 0; col < len(sf.schema.Fields()); col++ {
switch sf.schema.Field(col).Type {
case arrow.PrimitiveTypes.Int64:
sf.SetIntValue(col, rowid, cs.Columns[col].([]int64)[i])
case arrow.PrimitiveTypes.Float64:
sf.SetFloatValue(col, rowid, cs.Columns[col].([]float64)[i])
case arrow.BinaryTypes.String:
sf.SetStringValue(col, rowid, cs.Columns[col].([]string)[i])
default:
panic(fmt.Sprintf("2 Unknown Type %v", sf.schema.Field(col).Type))
}
}
}
}
return nil
}
type twoSlices struct {
id_slice []int
lists_slice [][]string
}
type SortByOther twoSlices
func (sbo SortByOther) Len() int {
return len(sbo.id_slice)
}
func (sbo SortByOther) Swap(i, j int) {
sbo.id_slice[i], sbo.id_slice[j] = sbo.id_slice[j], sbo.id_slice[i]
sbo.lists_slice[i], sbo.lists_slice[j] = sbo.lists_slice[j], sbo.lists_slice[i]
}
func (sbo SortByOther) Less(i, j int) bool {
return sbo.id_slice[i] < sbo.id_slice[j]
}
func (sf *ShardFile) buildFromStrings(idx int, mem memory.Allocator) []arrow.Array {
ids := make([]int, 0)
lists := make([][]string, 0)
for k, v := range sf.strings {
if k.col == idx { // ugh not ordered :(
ids = append(ids, k.chunk)
lists = append(lists, v)
}
}
// sort ids/lists
parts := twoSlices{id_slice: ids, lists_slice: lists}
sort.Sort(SortByOther(parts))
builder := array.NewStringBuilder(mem)
chunks := make([]arrow.Array, 0)
for _, v := range parts.lists_slice {
builder.AppendValues(v, nil)
newChunk := builder.NewArray()
chunks = append(chunks, newChunk)
}
return chunks
}
func (sf *ShardFile) Save(name string) error {
parts := make([]arrow.Array, 0)
mem := memory.NewGoAllocator()
for col := 0; col < len(sf.schema.Fields()); col++ {
chunks := make([]arrow.Array, 0)
if sf.table != nil {
// we append if there was existing file
column := sf.table.Column(col)
// if primitive type
switch column.DataType() {
case arrow.BinaryTypes.String:
chunks = sf.buildFromStrings(col, mem)
default:
chunks = append(chunks, column.Data().Chunks()...)
}
// else binary type
}
switch sf.schema.Field(col).Type {
case arrow.PrimitiveTypes.Int64:
// case *arrow.Int64Type:
if sf.added > 0 {
ibuild := array.NewInt64Builder(mem)
ibuild.AppendValues(sf.columns[col].([]int64), nil) // TODO(twg) 2022/09/28 need to handle null
newChunk := ibuild.NewArray()
chunks = append(chunks, newChunk)
}
record, err := array.Concatenate(chunks, mem)
if err != nil {
return err
}
parts = append(parts, record)
case arrow.PrimitiveTypes.Float64:
// case *arrow.Float64Type:
if sf.added > 0 {
fbuild := array.NewFloat64Builder(mem)
fbuild.AppendValues(sf.columns[col].([]float64), nil) // TODO(twg) 2022/09/28 need to handle null
newChunk := fbuild.NewArray()
chunks = append(chunks, newChunk)
}
record, err := array.Concatenate(chunks, mem)
if err != nil {
return err
}
parts = append(parts, record)
case arrow.BinaryTypes.String:
if sf.added > 0 {
fbuild := array.NewStringBuilder(mem)
fbuild.AppendValues(sf.columns[col].([]string), nil) // TODO(twg) 2022/09/28 need to handle null
newChunk := fbuild.NewArray()
chunks = append(chunks, newChunk)
}
record, err := array.Concatenate(chunks, mem)
if err != nil {
return err
}
parts = append(parts, record)
default:
vprint.VV("UNKNOWN %T", sf.schema.Field(col).Type)
}
}
rec := array.NewRecord(sf.schema, parts, sf.beforeRows+sf.added)
table := array.NewTableFromRecords(sf.schema, []arrow.Record{rec})
return sf.executor.SaveTable(name, table, mem)
}
// TODO(twg) 2022/10/03 Not a huge fan of the global variable will look at adding to executor structure
// when dataframe is fully integrated
var (
dataframeShardLocks map[uint64]*sync.Mutex
muWriteDataframe sync.Mutex
)
func init() {
dataframeShardLocks = make(map[uint64]*sync.Mutex)
}
func getDataframeWritelock(shard uint64) *sync.Mutex {
muWriteDataframe.Lock()
defer muWriteDataframe.Unlock()
lock, ok := dataframeShardLocks[shard]
if ok {
return lock
}
newLock := sync.Mutex{}
dataframeShardLocks[shard] = &newLock
return &newLock
}
func (api *API) ApplyDataframeChangeset(ctx context.Context, index string, cs *ChangesetRequest, shard uint64) error {
// TODO(twg) 2022/09/29 need to validate api call
idx := api.Holder().Index(index)
// check if dataframe exists
fname := idx.GetDataFramePath(shard)
// only 1 shard writer allowed at at time so wait for it to be available
mu := getDataframeWritelock(shard)
mu.Lock()
defer mu.Unlock()
mem := memory.NewGoAllocator()
shardFile, err := NewShardFile(ctx, fname, mem, api.server.executor)
if err != nil {
return err
}
err = shardFile.EnsureSchema(cs)
if err != nil {
return err
}
return shardFile.Process(cs)
}
type column struct {
Name string
Type string
}
func (api *API) GetDataframeSchema(ctx context.Context, indexName string) (interface{}, error) {
idx, err := api.Index(ctx, indexName)
if err != nil {
return nil, err
}
base := idx.DataframesPath()
dir, _ := os.Open(base)
files, _ := dir.Readdir(0)
parts := make([]column, 0)
mem := memory.NewGoAllocator()
for i := range files {
file := files[i]
name := file.Name()
if api.server.executor.IsDataframeFile(name) {
// strip off the parquet extenison
name = strings.TrimSuffix(name, filepath.Ext(name))
// read the parquet file and extract the schema
fname := filepath.Join(base, name)
table, err := api.server.executor.getDataTable(ctx, fname, mem)
if err != nil {
return nil, err
}
for i := 0; i < int(table.NumCols()); i++ {
col := table.Column(i)
part := column{Name: col.Name(), Type: col.DataType().String()}
parts = append(parts, part)
}
break // only go on first file
}
}
return parts, nil
}

562
arrow.go
View file

@ -1,562 +0,0 @@
// Copyright 2021 Molecula Corp. All rights reserved.
package pilosa
import (
"context"
"encoding/json"
"fmt"
"io"
"os"
"strings"
"sync"
"github.com/apache/arrow/go/v10/arrow"
"github.com/apache/arrow/go/v10/arrow/array"
"github.com/apache/arrow/go/v10/arrow/ipc"
"github.com/apache/arrow/go/v10/arrow/memory"
"github.com/apache/arrow/go/v10/parquet"
"github.com/apache/arrow/go/v10/parquet/file"
"github.com/apache/arrow/go/v10/parquet/pqarrow"
"github.com/featurebasedb/featurebase/v3/pql"
"github.com/featurebasedb/featurebase/v3/tracing"
"github.com/gomem/gomem/pkg/dataframe"
"github.com/pkg/errors"
)
/*
The function Arrow provides filtered access to the raw values stored in the dataframe.
If Arrow is just provided a bitmap filter, such as ConstRow or any Bitmap Operation,
all the values associated with each column are returned. This set can be limited with
the addition of the header parameter
Example:
Arrow(ConstRow(columns=[2,4,6]),header=["fval"])
*/
// executeApply executes a Arrow() call.
func (e *executor) executeArrow(ctx context.Context, qcx *Qcx, index string, c *pql.Call, shards []uint64, opt *ExecOptions) (arrow.Table, error) {
if !e.dataframeEnabled {
return nil, errors.New("Dataframe support not enabled")
}
span, ctx := tracing.StartSpanFromContext(ctx, "Executor.executeArrow")
defer span.Finish()
if len(c.Children) > 1 {
return nil, errors.New("Apply() only accepts a single bitmap input filter")
}
var columnFilter []string
if cols, ok := c.Args["header"].([]interface{}); ok {
columnFilter = make([]string, 0, len(cols))
for _, v := range cols {
columnFilter = append(columnFilter, v.(string))
}
}
mapcounter := 0
reducecounter := 0
pool := memory.NewGoAllocator() // TODO(twg) 2022/09/01 singledton?
// Execute calls in bulk on each remote node and merge.
mu := &sync.Mutex{}
mapFn := func(ctx context.Context, shard uint64, mopt *mapOptions) (_ interface{}, err error) {
mu.Lock()
mapcounter++
mu.Unlock()
return e.executeArrowShard(ctx, qcx, index, c, shard, pool, columnFilter)
}
tables := make([]*BasicTable, 0)
reduceFn := func(ctx context.Context, prev, v interface{}) interface{} {
mu.Lock()
reducecounter++
mu.Unlock()
if v == nil {
return prev
}
switch t := v.(type) {
case *BasicTable:
if t.resolver != nil {
mu.Lock()
tables = append(tables, t)
mu.Unlock()
}
case arrow.Table:
if t.NumRows() > 0 {
bt := BasicTableFromArrow(t, pool)
mu.Lock()
tables = append(tables, bt)
mu.Unlock()
}
}
return nil
}
_, err := e.mapReduce(ctx, index, shards, c, opt, mapFn, reduceFn)
if err != nil {
return nil, err
}
if len(tables) == 0 {
return &BasicTable{name: "empty"}, nil
}
tbl := Concat(tables[0].Schema(), tables, pool)
r := dataframe.NewChunkResolver(tbl.Column(0))
return &BasicTable{resolver: &r, table: tbl}, nil
}
type BasicTable struct {
resolver dataframe.Resolver
table arrow.Table
filtered bool
name string
}
func (st *BasicTable) Name() string {
return st.name
}
func (st *BasicTable) Schema() *arrow.Schema {
if st.table != nil {
return st.table.Schema()
}
return &arrow.Schema{}
}
func (st *BasicTable) IsFiltered() bool {
return st.filtered
}
func (st *BasicTable) NumRows() int64 {
if st.resolver == nil {
return 0
}
return int64(st.resolver.NumRows())
}
func (st *BasicTable) NumCols() int64 {
if st.table != nil {
return st.table.NumCols()
}
return 0
}
func (st *BasicTable) Column(i int) *arrow.Column {
if st.table != nil {
return st.table.Column(i)
}
return nil
}
func (st *BasicTable) Retain() {
if st.table != nil {
st.table.Retain()
}
}
func (st *BasicTable) Release() {
if st.table != nil {
st.table.Retain()
}
}
func (st *BasicTable) Get(column, row int) interface{} {
field := st.Schema().Field(column)
c, i := st.resolver.Resolve(row)
nullable := field.Nullable
chunk := st.Column(column).Data().Chunk(c)
// TODO(twg) 2023/01/26 potential NULL support?
if nullable && chunk.IsNull(i) {
return nil
}
switch field.Type.(type) {
case *arrow.BooleanType:
return chunk.(*array.Boolean).Value(i)
case *arrow.Int8Type:
v := chunk.(*array.Int8).Int8Values()
return int64(v[i])
case *arrow.Int16Type:
v := chunk.(*array.Int16).Int16Values()
return int64(v[i])
case *arrow.Int32Type:
v := chunk.(*array.Int32).Int32Values()
return int64(v[i])
case *arrow.Int64Type:
v := chunk.(*array.Int64).Int64Values()
return int64(v[i])
case *arrow.Uint8Type:
v := chunk.(*array.Uint8).Uint8Values()
return uint64(v[i])
case *arrow.Uint16Type:
v := chunk.(*array.Uint16).Uint16Values()
return uint64(v[i])
case *arrow.Uint32Type:
v := chunk.(*array.Uint32).Uint32Values()
return uint64(v[i])
case *arrow.Uint64Type:
v := chunk.(*array.Uint64).Uint64Values()
return v[i]
case *arrow.Float32Type:
v := chunk.(*array.Float32).Float32Values()
return float64(v[i])
case *arrow.Float64Type:
v := chunk.(*array.Float64).Float64Values()
return v[i]
case *arrow.StringType:
return chunk.(*array.String).Value(i)
}
return 0
}
func builderFrom(mem memory.Allocator, dt arrow.DataType, size int64) array.Builder {
var bldr array.Builder
switch dt := dt.(type) {
case *arrow.BooleanType:
bldr = array.NewBooleanBuilder(mem)
case *arrow.Int8Type:
bldr = array.NewInt8Builder(mem)
case *arrow.Int16Type:
bldr = array.NewInt16Builder(mem)
case *arrow.Int32Type:
bldr = array.NewInt32Builder(mem)
case *arrow.Int64Type:
bldr = array.NewInt64Builder(mem)
case *arrow.Uint8Type:
bldr = array.NewUint8Builder(mem)
case *arrow.Uint16Type:
bldr = array.NewUint16Builder(mem)
case *arrow.Uint32Type:
bldr = array.NewUint32Builder(mem)
case *arrow.Uint64Type:
bldr = array.NewUint64Builder(mem)
case *arrow.Float32Type:
bldr = array.NewFloat32Builder(mem)
case *arrow.Float64Type:
bldr = array.NewFloat64Builder(mem)
case *arrow.StringType:
bldr = array.NewStringBuilder(mem)
default:
panic(fmt.Errorf("builderFrom: invalid Arrow type %v", dt))
}
bldr.Reserve(int(size))
return bldr
}
func appendData(bldr array.Builder, v interface{}) {
switch bldr := bldr.(type) {
case *array.BooleanBuilder:
bldr.Append(v.(bool))
case *array.Int8Builder:
bldr.Append(v.(int8))
case *array.Int16Builder:
bldr.Append(v.(int16))
case *array.Int32Builder:
bldr.Append(v.(int32))
case *array.Int64Builder:
bldr.Append(v.(int64))
case *array.Uint8Builder:
bldr.Append(v.(uint8))
case *array.Uint16Builder:
bldr.Append(v.(uint16))
case *array.Uint32Builder:
bldr.Append(v.(uint32))
case *array.Uint64Builder:
bldr.Append(v.(uint64))
case *array.Float32Builder:
bldr.Append(v.(float32))
case *array.Float64Builder:
bldr.Append(v.(float64))
case *array.StringBuilder:
bldr.Append(v.(string))
default:
panic(fmt.Errorf("appendData: invalid Arrow builder type %T", bldr))
}
}
func Concat(schema *arrow.Schema, tables []*BasicTable, mem memory.Allocator) arrow.Table {
if len(tables) == 1 {
if !tables[0].IsFiltered() {
return tables[0]
}
}
cols := make([]arrow.Column, len(schema.Fields()))
defer func(cols []arrow.Column) {
for i := range cols {
cols[i].Release()
}
}(cols)
sz := 0
for i := range tables {
sz += int(tables[i].NumRows())
}
for i := range cols {
field := schema.Field(i)
arrs := make([]arrow.Array, 0)
builder := builderFrom(mem, field.Type, int64(sz))
for t := range tables {
table := tables[t]
if table.IsFiltered() {
for row := 0; row < int(table.NumRows()); row++ {
v := table.Get(i, row)
appendData(builder, v)
}
arrs = append(arrs, builder.NewArray())
} else {
parts := table.Column(i).Data()
arrs = append(arrs, parts.Chunks()...)
}
}
chunk := arrow.NewChunked(field.Type, arrs)
cols[i] = *arrow.NewColumn(field, chunk)
chunk.Release()
}
return array.NewTable(schema, cols, -1)
}
func (st *BasicTable) MarshalJSON() ([]byte, error) {
results := make(map[string]interface{})
n := 0
if st.table != nil {
n = int(st.table.NumCols())
}
for b := 0; b < n; b++ {
col := st.table.Column(b)
result := make([]interface{}, st.resolver.NumRows())
for n := st.resolver.NumRows() - 1; n >= 0; n-- {
v := st.Get(b, n)
result[n] = v
}
results[col.Name()] = result
}
return json.Marshal(results)
}
func BasicTableFromArrow(table arrow.Table, mem memory.Allocator) *BasicTable {
col := table.Column(0)
r := dataframe.NewChunkResolver(col)
return &BasicTable{resolver: &r, table: table}
}
func filterColumns(filters []string, table arrow.Table) arrow.Table {
filters = append(filters, "_ID")
schema := table.Schema()
// TODO(twg) 2022/11/09 add glob support
allFields := schema.Fields()
in := func(key string) bool {
for _, v := range filters {
if v == key {
return true
}
}
return false
}
cols := make([]arrow.Column, 0)
fields := make([]arrow.Field, 0)
for i := range allFields {
field := allFields[i]
if in(field.Name) {
cols = append(cols, *table.Column(i))
fields = append(fields, field)
}
}
filterdSchema := arrow.NewSchema(fields, nil) // TODO(twg) 2022/11/09 handle meta:w
return array.NewTable(filterdSchema, cols, table.NumRows())
}
func (e *executor) executeArrowShard(ctx context.Context, qcx *Qcx, index string, c *pql.Call, shard uint64, pool memory.Allocator, columnFilter []string) (*BasicTable, error) {
name := fmt.Sprintf("a. %v", shard)
span, _ := tracing.StartSpanFromContext(ctx, "Executor.executeArrowShard")
defer span.Finish()
var filter *Row
if len(c.Children) == 1 {
row, err := e.executeBitmapCallShard(ctx, qcx, index, c.Children[0], shard)
if err != nil {
return nil, err
}
filter = row
if !filter.Any() {
// no need to actuall run the query for its not operating against any values
return &BasicTable{name: name}, nil
}
}
//
ids := filter.ShardColumns() // needs to be shard columns
// Fetch index.
idx := e.Holder.Index(index)
if idx == nil {
return nil, newNotFoundError(ErrIndexNotFound, index)
}
fname := idx.GetDataFramePath(shard)
if !e.dataFrameExists(fname) {
return &BasicTable{name: name}, nil
}
table, err := e.getDataTable(ctx, fname, pool)
if err != nil {
return nil, errors.Wrap(err, "arrow readTableParquet")
}
defer table.Release()
if len(columnFilter) > 0 {
table = filterColumns(columnFilter, table)
}
df, err := dataframe.NewDataFrameFromTable(pool, table)
if err != nil {
return nil, errors.Wrap(err, "arrow NewDataFromTable")
}
p := dataframe.NewChunkResolver(df.ColumnAt(0))
var resolver dataframe.Resolver
resolver = &p
if filter != nil {
if len(ids) == 0 {
return &BasicTable{name: name}, nil
}
resolver, err = filterDataframe(resolver, pool, ids)
if err != nil {
return nil, errors.Wrap(err, "filtering dataframe")
}
}
table.Retain()
return &BasicTable{resolver: resolver, table: table, filtered: filter != nil, name: name}, nil
}
func (e *executor) dataFrameExists(fname string) bool {
if e.typeIsParquet() {
if _, err := os.Stat(fname + ".parquet"); os.IsNotExist(err) {
return false
}
return true
}
if _, err := os.Stat(fname + ".arrow"); os.IsNotExist(err) {
return false
}
return true
}
func (e *executor) getDataTable(ctx context.Context, fname string, mem memory.Allocator) (arrow.Table, error) {
if e.typeIsParquet() {
table, err := readTableParquetCtx(ctx, fname, mem)
return table, err
}
return readTableArrow(fname, mem)
}
func (e *executor) typeIsParquet() bool {
return e.datafameUseParquet
}
func (e *executor) IsDataframeFile(name string) bool {
if e.typeIsParquet() {
return strings.HasSuffix(name, ".parquet")
}
return strings.HasSuffix(name, ".arrow")
}
func (e *executor) SaveTable(name string, table arrow.Table, mem memory.Allocator) error {
if e.typeIsParquet() {
return writeTableParquet(table, name)
}
return writeTableArrow(table, name, mem)
}
func (e *executor) TableExtension() string {
if e.typeIsParquet() {
return ".parquet"
}
return ".arrow"
}
func readTableArrow(filename string, mem memory.Allocator) (arrow.Table, error) {
r, err := os.Open(filename + ".arrow")
if err != nil {
return nil, err
}
rr, err := ipc.NewFileReader(r, ipc.WithAllocator(mem))
if err != nil {
return nil, err
}
defer rr.Close()
records := make([]arrow.Record, rr.NumRecords())
i := 0
for {
rec, err := rr.Read()
if err == io.EOF {
break
} else if err != nil {
return nil, err
}
records[i] = rec
i++
}
records = records[:i]
table := array.NewTableFromRecords(rr.Schema(), records)
return table, nil
}
func readTableParquetCtx(ctx context.Context, filename string, mem memory.Allocator) (arrow.Table, error) {
r, err := os.Open(filename + ".parquet")
if err != nil {
return nil, err
}
defer r.Close()
pf, err := file.NewParquetReader(r)
if err != nil {
return nil, err
}
reader, err := pqarrow.NewFileReader(pf, pqarrow.ArrowReadProperties{}, mem)
if err != nil {
return nil, err
}
return reader.ReadTable(ctx)
}
func writeTableParquet(table arrow.Table, filename string) error {
f, err := os.Create(filename + ".parquet")
if err != nil {
return err
}
defer f.Close()
props := parquet.NewWriterProperties(parquet.WithDictionaryDefault(false))
arrProps := pqarrow.DefaultWriterProps()
chunkSize := 10 * 1024 * 1024
err = pqarrow.WriteTable(table, f, int64(chunkSize), props, arrProps)
if err != nil {
return err
}
f.Sync()
return nil
}
func writeTableArrow(table arrow.Table, filename string, mem memory.Allocator) error {
f, err := os.Create(filename + ".arrow")
if err != nil {
return err
}
defer f.Close()
writer, err := ipc.NewFileWriter(f, ipc.WithAllocator(mem), ipc.WithSchema(table.Schema()))
if err != nil {
panic(err)
}
chunkSize := int64(0)
tr := array.NewTableReader(table, chunkSize)
defer tr.Release()
n := 0
for tr.Next() {
arec := tr.Record()
err = writer.Write(arec)
if err != nil {
panic(err)
}
n++
}
err = writer.Close()
if err != nil {
panic(err)
}
f.Sync()
return nil
}

View file

@ -1,53 +0,0 @@
// Copyright 2021 Molecula Corp. All rights reserved.
package pilosa
import (
"context"
"encoding/hex"
"math/rand"
"os"
"path/filepath"
"testing"
"github.com/apache/arrow/go/v10/arrow"
"github.com/apache/arrow/go/v10/arrow/array"
"github.com/apache/arrow/go/v10/arrow/memory"
)
func TempFileName(prefix string) string {
randBytes := make([]byte, 16)
rand.Read(randBytes)
return filepath.Join(os.TempDir(), prefix+hex.EncodeToString(randBytes))
}
func Test_TableParquet(t *testing.T) {
// create a arrow table
schema := arrow.NewSchema(
[]arrow.Field{
{Name: "num", Type: arrow.PrimitiveTypes.Float64},
},
nil, // no metadata
)
mem := memory.NewGoAllocator()
b := array.NewRecordBuilder(mem, schema)
defer b.Release()
b.Field(0).(*array.Float64Builder).AppendValues([]float64{1.0, 1.5, 2.0}, nil)
table := array.NewTableFromRecords(schema, []arrow.Record{b.NewRecord()})
defer table.Release()
fileName := TempFileName("pq-")
// save it as a parquet file
err := writeTableParquet(table, fileName)
if err != nil {
t.Fatal(err)
}
defer os.Remove(fileName)
// read it back in and compare the result
got, err := readTableParquetCtx(context.Background(), fileName, mem)
if err != nil {
t.Fatalf("readTableParquetCtx() error = %v", err)
}
if got.NumCols() != table.NumCols() {
t.Errorf("got:%v expected:%v", got.NumCols(), table.NumCols())
}
}

478
attr.go Normal file
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@ -0,0 +1,478 @@
package pilosa
import (
"bytes"
"crypto/sha1"
"encoding/binary"
"fmt"
"sort"
"sync"
"time"
"github.com/boltdb/bolt"
"github.com/gogo/protobuf/proto"
"github.com/pilosa/pilosa/internal"
)
// AttrBlockSize is the size of attribute blocks for anti-entropy.
const AttrBlockSize = 100
// Attribute data type enum.
const (
AttrTypeString = 1
AttrTypeUint = 2
AttrTypeBool = 3
)
// AttrStore represents a storage layer for attributes.
type AttrStore struct {
mu sync.Mutex
path string
db *bolt.DB
// in-memory cache
attrs map[uint64]map[string]interface{}
}
// NewAttrStore returns a new instance of AttrStore.
func NewAttrStore(path string) *AttrStore {
return &AttrStore{
path: path,
attrs: make(map[uint64]map[string]interface{}),
}
}
// Path returns path to the store's data file.
func (s *AttrStore) Path() string { return s.path }
// Open opens and initializes the store.
func (s *AttrStore) Open() error {
// Open storage.
db, err := bolt.Open(s.path, 0666, &bolt.Options{Timeout: 1 * time.Second})
if err != nil {
return err
}
s.db = db
// Initialize database.
if err := s.db.Update(func(tx *bolt.Tx) error {
if _, err := tx.CreateBucketIfNotExists([]byte("attrs")); err != nil {
return err
}
return nil
}); err != nil {
return err
}
return nil
}
// Close closes the store.
func (s *AttrStore) Close() error {
if s.db != nil {
s.db.Close()
}
return nil
}
// Attrs returns a set of attributes by ID.
func (s *AttrStore) Attrs(id uint64) (m map[string]interface{}, err error) {
s.mu.Lock()
defer s.mu.Unlock()
// Check cache for map.
if m = s.attrs[id]; m != nil {
return m, nil
}
// Find attributes from storage.
if err = s.db.View(func(tx *bolt.Tx) error {
m, err = txAttrs(tx, id)
if err != nil {
return err
}
return nil
}); err != nil {
return nil, err
}
// Add to cache.
s.attrs[id] = m
return
}
// SetAttrs sets attribute values for a given ID.
func (s *AttrStore) SetAttrs(id uint64, m map[string]interface{}) error {
s.mu.Lock()
defer s.mu.Unlock()
var attr map[string]interface{}
if err := s.db.Update(func(tx *bolt.Tx) error {
tmp, err := txUpdateAttrs(tx, id, m)
if err != nil {
return err
}
attr = tmp
return nil
}); err != nil {
return err
}
// Swap attributes map in cache.
s.attrs[id] = attr
return nil
}
// SetBulkAttrs sets attribute values for a set of ids.
func (s *AttrStore) SetBulkAttrs(m map[uint64]map[string]interface{}) error {
s.mu.Lock()
defer s.mu.Unlock()
attrs := make(map[uint64]map[string]interface{})
if err := s.db.Update(func(tx *bolt.Tx) error {
// Collect and sort keys.
ids := make([]uint64, 0, len(m))
for id := range m {
ids = append(ids, id)
}
sort.Sort(uint64Slice(ids))
// Update attributes for each id.
for _, id := range ids {
attr, err := txUpdateAttrs(tx, id, m[id])
if err != nil {
return err
}
attrs[id] = attr
}
return nil
}); err != nil {
return err
}
// Swap attributes map in cache.
for id, attr := range attrs {
s.attrs[id] = attr
}
return nil
}
// Blocks returns a list of all blocks in the store.
func (s *AttrStore) Blocks() ([]AttrBlock, error) {
tx, err := s.db.Begin(false)
if err != nil {
return nil, err
}
defer tx.Rollback()
// Wrap cursor to segment by block.
cur := newBlockCursor(tx.Bucket([]byte("attrs")).Cursor(), AttrBlockSize)
// Iterate over each block.
var blocks []AttrBlock
for cur.nextBlock() {
block := AttrBlock{ID: cur.blockID()}
// Compute checksum of every key/value in block.
h := sha1.New()
for k, v := cur.next(); k != nil; k, v = cur.next() {
h.Write(k)
h.Write(v)
}
block.Checksum = h.Sum(nil)
// Append block.
blocks = append(blocks, block)
}
return blocks, nil
}
// BlockData returns all data for a single block.
func (s *AttrStore) BlockData(i uint64) (map[uint64]map[string]interface{}, error) {
m := make(map[uint64]map[string]interface{})
// Start read-only transaction.
tx, err := s.db.Begin(false)
if err != nil {
return nil, err
}
defer tx.Rollback()
// Move to the start of the block.
min := u64tob(uint64(i) * AttrBlockSize)
max := u64tob(uint64(i+1) * AttrBlockSize)
cur := tx.Bucket([]byte("attrs")).Cursor()
for k, v := cur.Seek(min); k != nil; k, v = cur.Next() {
// Exit if we're past the end of the block.
if bytes.Compare(k, max) != -1 {
break
}
// Decode attribute map and associate with id.
var pb internal.AttrMap
if err := proto.Unmarshal(v, &pb); err != nil {
return nil, err
}
m[btou64(k)] = decodeAttrs(pb.GetAttrs())
}
return m, nil
}
// txAttrs returns a map of attributes for a bitmap.
func txAttrs(tx *bolt.Tx, id uint64) (map[string]interface{}, error) {
v := tx.Bucket([]byte("attrs")).Get(u64tob(id))
if v == nil {
return emptyMap, nil
}
var pb internal.AttrMap
if err := proto.Unmarshal(v, &pb); err != nil {
return nil, err
}
return decodeAttrs(pb.GetAttrs()), nil
}
// txUpdateAttrs updates the attributes for an id.
// Returns the new combined set of attributes for the id.
func txUpdateAttrs(tx *bolt.Tx, id uint64, m map[string]interface{}) (map[string]interface{}, error) {
attr, err := txAttrs(tx, id)
if err != nil {
return nil, err
}
// Create a new map if it is empty so we don't update emptyMap.
if len(attr) == 0 {
attr = make(map[string]interface{}, len(m))
}
// Merge attributes with original values.
// Nil values should delete keys.
for k, v := range m {
if v == nil {
delete(attr, k)
continue
}
switch v := v.(type) {
case int:
attr[k] = uint64(v)
case uint:
attr[k] = uint64(v)
case int64:
attr[k] = uint64(v)
case string, uint64, bool:
attr[k] = v
default:
return nil, fmt.Errorf("invalid attr type: %T", v)
}
}
// Marshal and save new values.
buf, err := proto.Marshal(&internal.AttrMap{Attrs: encodeAttrs(attr)})
if err != nil {
return nil, err
}
if err := tx.Bucket([]byte("attrs")).Put(u64tob(id), buf); err != nil {
return nil, err
}
return attr, nil
}
func encodeAttrs(m map[string]interface{}) []*internal.Attr {
keys := make([]string, 0, len(m))
for k := range m {
keys = append(keys, k)
}
sort.Strings(keys)
a := make([]*internal.Attr, len(keys))
for i := range keys {
a[i] = encodeAttr(keys[i], m[keys[i]])
}
return a
}
func decodeAttrs(pb []*internal.Attr) map[string]interface{} {
m := make(map[string]interface{}, len(pb))
for i := range pb {
key, value := decodeAttr(pb[i])
m[key] = value
}
return m
}
// encodeAttr converts a key/value pair into an Attr internal representation.
func encodeAttr(key string, value interface{}) *internal.Attr {
pb := &internal.Attr{Key: key}
switch value := value.(type) {
case string:
pb.Type = AttrTypeString
pb.StringValue = value
case float64:
pb.Type = AttrTypeUint
pb.UintValue = uint64(value)
case uint64:
pb.Type = AttrTypeUint
pb.UintValue = value
case int64:
pb.Type = AttrTypeUint
pb.UintValue = uint64(value)
case bool:
pb.Type = AttrTypeBool
pb.BoolValue = value
}
return pb
}
// decodeAttr converts from an Attr internal representation to a key/value pair.
func decodeAttr(attr *internal.Attr) (key string, value interface{}) {
switch attr.Type {
case AttrTypeString:
return attr.Key, attr.StringValue
case AttrTypeUint:
return attr.Key, attr.UintValue
case AttrTypeBool:
return attr.Key, attr.BoolValue
default:
return attr.Key, nil
}
}
// cloneAttrs returns a shallow clone of m.
func cloneAttrs(m map[string]interface{}) map[string]interface{} {
other := make(map[string]interface{}, len(m))
for k, v := range m {
other[k] = v
}
return other
}
// u64tob encodes v to big endian encoding.
func u64tob(v uint64) []byte {
b := make([]byte, 8)
binary.BigEndian.PutUint64(b, v)
return b
}
// btou64 decodes b from big endian encoding.
func btou64(b []byte) uint64 { return binary.BigEndian.Uint64(b) }
// emptyMap is a reusable map that contains no keys.
var emptyMap = make(map[string]interface{})
// AttrBlock represents a checksummed block of the attribute store.
type AttrBlock struct {
ID uint64 `json:"id"`
Checksum []byte `json:"checksum"`
}
// AttrBlocks represents a list of blocks.
type AttrBlocks []AttrBlock
// Diff returns a list of block ids that are different or are new in other.
// Block lists must be in sorted order.
func (a AttrBlocks) Diff(other []AttrBlock) []uint64 {
var ids []uint64
for {
// Read next block from each list.
var blk0, blk1 *AttrBlock
if len(a) > 0 {
blk0 = &a[0]
}
if len(other) > 0 {
blk1 = &other[0]
}
// Exit if "a" contains no more blocks.
if blk0 == nil {
return ids
}
// Add block ID if it's different or if it's only in "a".
if blk1 == nil || blk0.ID < blk1.ID {
ids = append(ids, blk0.ID)
a = a[1:]
} else if blk1.ID < blk0.ID {
other = other[1:]
} else {
if !bytes.Equal(blk0.Checksum, blk1.Checksum) {
ids = append(ids, blk0.ID)
}
a, other = a[1:], other[1:]
}
}
}
// blockCursor represents a cursor for iterating over blocks of a bolt bucket.
type blockCursor struct {
cur *bolt.Cursor
base uint64
n uint64
buf struct {
key []byte
value []byte
filled bool
}
}
// newBlockCursor returns a new block cursor that wraps cur using n sized blocks.
func newBlockCursor(c *bolt.Cursor, n int) blockCursor {
cur := blockCursor{
cur: c,
n: uint64(n),
}
cur.buf.key, cur.buf.value = c.First()
cur.buf.filled = true
return cur
}
// blockID returns the current block ID. Only valid after call to nextBlock().
func (cur *blockCursor) blockID() uint64 { return cur.base }
// nextBlock moves the cursor to the next block.
// Returns true if another block exists, otherwise returns false.
func (cur *blockCursor) nextBlock() bool {
if cur.buf.key == nil {
return false
}
cur.base = binary.BigEndian.Uint64(cur.buf.key) / cur.n
return true
}
// next returns the next key/value within the block.
// Returns nils at the end of the block.
func (cur *blockCursor) next() (key, value []byte) {
// Use buffered value, if set.
if cur.buf.filled {
key, value = cur.buf.key, cur.buf.value
cur.buf.filled = false
return key, value
}
// Read next key.
key, value = cur.cur.Next()
// Fill buffer for EOF.
if key == nil {
cur.buf.key, cur.buf.value, cur.buf.filled = key, value, false
return nil, nil
}
// Parse key and buffer if outside of block.
id := binary.BigEndian.Uint64(key)
if id/cur.n > cur.base {
cur.buf.key, cur.buf.value, cur.buf.filled = key, value, true
return nil, nil
}
return key, value
}

145
attr_test.go Normal file
View file

@ -0,0 +1,145 @@
package pilosa_test
import (
"io/ioutil"
"os"
"reflect"
"testing"
"github.com/pilosa/pilosa"
)
// Ensure database can set and retrieve profile attributes.
func TestAttrStore_Attrs(t *testing.T) {
s := MustOpenAttrStore()
defer s.Close()
// Set attributes.
if err := s.SetAttrs(1, map[string]interface{}{"A": uint64(100)}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(2, map[string]interface{}{"A": uint64(200)}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(1, map[string]interface{}{"B": "VALUE"}); err != nil {
t.Fatal(err)
}
// Retrieve attributes for profile #1.
if m, err := s.Attrs(1); err != nil {
t.Fatal(err)
} else if !reflect.DeepEqual(m, map[string]interface{}{"A": uint64(100), "B": "VALUE"}) {
t.Fatalf("unexpected attrs(1): %#v", m)
}
// Retrieve attributes for profile #2.
if m, err := s.Attrs(2); err != nil {
t.Fatal(err)
} else if !reflect.DeepEqual(m, map[string]interface{}{"A": uint64(200)}) {
t.Fatalf("unexpected attrs(2): %#v", m)
}
}
// Ensure database returns a non-nil empty map if unset.
func TestAttrStore_Attrs_Empty(t *testing.T) {
s := MustOpenAttrStore()
defer s.Close()
if m, err := s.Attrs(100); err != nil {
t.Fatal(err)
} else if m == nil || len(m) > 0 {
t.Fatalf("unexpected attrs: %#v", m)
}
}
// Ensure database can unset attributes if explicitly set to nil.
func TestAttrStore_Attrs_Unset(t *testing.T) {
s := MustOpenAttrStore()
defer s.Close()
// Set attributes.
if err := s.SetAttrs(1, map[string]interface{}{"A": "X", "B": "Y"}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(1, map[string]interface{}{"B": nil}); err != nil {
t.Fatal(err)
}
// Verify attributes.
if m, err := s.Attrs(1); err != nil {
t.Fatal(err)
} else if !reflect.DeepEqual(m, map[string]interface{}{"A": "X"}) {
t.Fatalf("unexpected attrs: %#v", m)
}
}
// Ensure attribute block checksums can be returned.
func TestAttrStore_Blocks(t *testing.T) {
s := MustOpenAttrStore()
defer s.Close()
// Set attributes.
if err := s.SetAttrs(1, map[string]interface{}{"A": uint64(100)}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(2, map[string]interface{}{"A": uint64(200)}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(100, map[string]interface{}{"B": "VALUE"}); err != nil {
t.Fatal(err)
} else if err := s.SetAttrs(350, map[string]interface{}{"C": "FOO"}); err != nil {
t.Fatal(err)
}
// Retrieve blocks.
blks0, err := s.Blocks()
if err != nil {
t.Fatal(err)
} else if len(blks0) != 3 || blks0[0].ID != 0 || blks0[1].ID != 1 || blks0[2].ID != 3 {
t.Fatalf("unexpected blocks: %#v", blks0)
}
// Change second block.
if err := s.SetAttrs(100, map[string]interface{}{"X": 12}); err != nil {
t.Fatal(err)
}
// Ensure second block changed.
blks1, err := s.Blocks()
if err != nil {
t.Fatal(err)
} else if !reflect.DeepEqual(blks0[0], blks1[0]) {
t.Fatalf("block 0 mismatch: %#v != %#v", blks0[0], blks1[0])
} else if reflect.DeepEqual(blks0[1], blks1[1]) {
t.Fatalf("block 1 match: %#v ", blks0[0])
} else if !reflect.DeepEqual(blks0[2], blks1[2]) {
t.Fatalf("block 2 mismatch: %#v != %#v", blks0[2], blks1[2])
}
}
// AttrStore represents a test wrapper for pilosa.AttrStore.
type AttrStore struct {
*pilosa.AttrStore
}
// NewAttrStore returns a new instance of AttrStore.
func NewAttrStore() *AttrStore {
f, err := ioutil.TempFile("", "pilosa-attr-")
if err != nil {
panic(err)
}
f.Close()
os.Remove(f.Name())
return &AttrStore{AttrStore: pilosa.NewAttrStore(f.Name())}
}
// MustOpenAttrStore returns a new, opened attribute store at a temporary path. Panic on error.
func MustOpenAttrStore() *AttrStore {
s := NewAttrStore()
if err := s.Open(); err != nil {
panic(err)
}
return s
}
// Close closes the database and removes the underlying data.
func (s *AttrStore) Close() error {
defer os.RemoveAll(s.Path())
return s.AttrStore.Close()
}

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@ -1,13 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"github.com/featurebasedb/featurebase/v3/testhook"
)
var NewAuditor func() testhook.Auditor = NewNopAuditor
func NewNopAuditor() testhook.Auditor {
return testhook.NewNopAuditor()
}

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@ -1,40 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"fmt"
"reflect"
"github.com/featurebasedb/featurebase/v3/testhook"
)
// These audit hooks are desireable during testing, but not in
// production.
type auditorViewHooks struct{}
type auditorFragmentHooks struct{}
// static type checks
var _ testhook.RegistryHookLive = &auditorViewHooks{}
var _ testhook.RegistryHookLive = &auditorFragmentHooks{}
func (*auditorViewHooks) Live(o interface{}, entry *testhook.RegistryEntry) error {
if entry != nil && entry.OpenCount != 0 {
return fmt.Errorf("view %s still open", o.(*view).name)
}
return nil
}
func (*auditorFragmentHooks) Live(o interface{}, entry *testhook.RegistryEntry) error {
if entry != nil && entry.OpenCount != 0 {
return fmt.Errorf("fragment %s still open", o.(*fragment).path())
}
return nil
}
func GetInternalTestHooks() testhook.RegistryHooks {
return map[reflect.Type]testhook.RegistryHook{
reflect.TypeOf((*view)(nil)): &auditorViewHooks{},
reflect.TypeOf((*fragment)(nil)): &auditorFragmentHooks{},
}
}

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@ -1,95 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa_test
import (
"fmt"
"os"
"reflect"
"github.com/featurebasedb/featurebase/v3"
"github.com/featurebasedb/featurebase/v3/testhook"
)
// AuditLeaksOn is a global switch to turn on resource
// leak checking at the end of a test run.
var AuditLeaksOn = true
// for tests, we use a single shared auditor used by all of the holders.
var globalTestAuditor = testhook.NewVerifyCloseAuditor(testHooks)
// These audit hooks are desireable during testing, but not in
// production.
type auditorIndexHooks struct{}
type auditorFieldHooks struct{}
type auditorHolderHooks struct{}
// static type checking
var _ testhook.RegistryHookLive = &auditorIndexHooks{}
var _ testhook.RegistryHookLive = &auditorFieldHooks{}
var _ testhook.RegistryHookPostDestroy = &auditorHolderHooks{}
var _ testhook.RegistryHookLive = &auditorHolderHooks{}
var testHooks = map[reflect.Type]testhook.RegistryHook{
reflect.TypeOf((*pilosa.Index)(nil)): &auditorIndexHooks{},
reflect.TypeOf((*pilosa.Field)(nil)): &auditorFieldHooks{},
reflect.TypeOf((*pilosa.Holder)(nil)): &auditorHolderHooks{},
}
func init() {
if !AuditLeaksOn {
return
}
for k, v := range pilosa.GetInternalTestHooks() {
testHooks[k] = v
}
testhook.RegisterPreTestHook(func() error {
pilosa.NewAuditor = NewTestAuditor
return nil
})
testhook.RegisterPostTestHook(func() error {
err, errs := globalTestAuditor.FinalCheck()
if err != nil {
for i, e := range errs {
fmt.Fprintf(os.Stderr, "[%d]: %v\n", i, e)
}
}
return err
})
}
func NewTestAuditor() testhook.Auditor {
return globalTestAuditor
}
func (*auditorIndexHooks) Live(o interface{}, entry *testhook.RegistryEntry) error {
if entry != nil && entry.OpenCount != 0 {
return fmt.Errorf("index %s still open", o.(*pilosa.Index).Name())
}
return nil
}
func (*auditorFieldHooks) Live(o interface{}, entry *testhook.RegistryEntry) error {
if entry != nil && entry.OpenCount != 0 {
return fmt.Errorf("field %s still open", o.(*pilosa.Field).Name())
}
return nil
}
func (*auditorHolderHooks) WasDestroyed(o interface{}, kv testhook.KV, ent *testhook.RegistryEntry, err error) error {
path := o.(*pilosa.Holder).Path()
if path == "" {
fmt.Fprintf(os.Stderr, "OOPS: trying to destroy a holder with no path! created: %s\n",
ent.Stack)
} else {
os.RemoveAll(o.(*pilosa.Holder).Path())
}
return err
}
func (*auditorHolderHooks) Live(o interface{}, entry *testhook.RegistryEntry) error {
if entry != nil && entry.OpenCount != 0 {
return fmt.Errorf("holder %s still open", o.(*pilosa.Holder).Path())
}
return nil
}

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@ -1,445 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
// Package authn handles authentication
package authn
import (
"context"
"encoding/hex"
"encoding/json"
"fmt"
"net"
"net/http"
"net/url"
"strconv"
"strings"
"time"
"github.com/golang-jwt/jwt"
"google.golang.org/grpc"
"google.golang.org/grpc/metadata"
"github.com/featurebasedb/featurebase/v3/logger"
"github.com/pkg/errors"
"golang.org/x/oauth2"
)
// AuthContextKey is a unique type to prevent collisions when using context.WithValue()
type AuthContextKey string
const (
// AccessCookieName is the name of the cookie that holds the access token.
AccessCookieName = "molecula-chip"
// RefreshCookieName is the name of the cookie that holds the refresh token.
RefreshCookieName = "refresh-molecula-chip"
// RefreshHeaderName is the name of the header that holds the refresh token.
RefreshHeaderName = "X-Molecula-Refresh-Token"
// ContextValueAccessToken is the key used to set AccessTokens in a ctx.
ContextValueAccessToken = AuthContextKey("Access")
// ContextValueRefreshToken is the key used to set RefreshTokens in a ctx.
ContextValueRefreshToken = AuthContextKey("Refresh")
)
// cachedGroups is used to hold groups and when they were last cached
type cachedGroups struct {
cacheTime time.Time
groups []Group
}
// UserInfo holds the information about the user from the token
type UserInfo struct {
UserID string `json:"userid"`
UserName string `json:"username"`
Groups []Group `json:"groups"`
Expiry time.Time `json:"expiry"`
Token string `json:"token"`
RefreshToken string `json:"refreshtoken"`
}
// Group holds group information for an authenticated user
type Group struct {
GroupID string `json:"id"`
GroupName string `json:"displayName"`
}
// Groups holds a slice of Group for marshalling from JSON
type Groups struct {
NextLink string `json:"@odata.nextLink"`
Groups []Group `json:"value"`
}
// Auth holds state, configuration, and utilities needed for authentication.
type Auth struct {
logger logger.Logger
accessCookieName string
refreshCookieName string
secretKey []byte
groupEndpoint string
logoutEndpoint string
fbURL string // fbURL is the domain featurebase is hosted on, used for post logout redirection
oAuthConfig *oauth2.Config
cacheTTL time.Duration // cacheTTL is used to determine if a cached item should be refreshed or not
groupsCache map[string]cachedGroups // groupsCache is a map of accessToken -> group memberships
lastCacheClean time.Time // last cache clean is the time that the cache was last cleaned
allowedNetworks []net.IPNet // list of allowed networks for ingest
}
// NewAuth instantiates and returns a new Auth struct
func NewAuth(logger logger.Logger, url string, scopes []string, authURL, tokenURL, groupEndpoint, logout, clientID, clientSecret, secretKey string, configuredIPs []string) (auth *Auth, err error) {
auth = &Auth{
logger: logger,
accessCookieName: AccessCookieName,
refreshCookieName: RefreshCookieName,
groupEndpoint: groupEndpoint,
logoutEndpoint: logout,
fbURL: url,
oAuthConfig: &oauth2.Config{
RedirectURL: fmt.Sprintf("%s/redirect", url),
ClientID: clientID,
ClientSecret: clientSecret,
Scopes: scopes,
Endpoint: oauth2.Endpoint{
AuthURL: authURL,
TokenURL: tokenURL,
},
},
groupsCache: map[string]cachedGroups{},
cacheTTL: 10 * time.Minute,
lastCacheClean: time.Now(),
}
if auth.secretKey, err = decodeHex(secretKey); err != nil {
return nil, errors.Wrap(err, "decoding secret key")
}
// convert IPs and add them to allowed networks
err = auth.convertIP(configuredIPs)
if err != nil {
return nil, err
}
return auth, nil
}
// CleanOAuthConfig returns a's oauthConfig without the client secret
func (a Auth) CleanOAuthConfig() oauth2.Config {
b := *a.oAuthConfig
b.ClientSecret = ""
return b
}
// SecretKey is a convenient function to get the SecretKey from an Auth struct
func (a Auth) SecretKey() []byte {
return a.secretKey
}
// refreshToken refreshes a given access/refresh token pair
func (a *Auth) refreshToken(access, refresh string) (string, string, error) {
resp, err := http.PostForm(a.oAuthConfig.Endpoint.TokenURL,
url.Values{
"grant_type": {"refresh_token"},
"refresh_token": {refresh},
"client_id": {a.oAuthConfig.ClientID},
"client_secret": {a.oAuthConfig.ClientSecret},
},
)
if err != nil {
return "", "", errors.Wrap(err, "refreshing token")
}
if resp.StatusCode != http.StatusOK {
return "", "", fmt.Errorf("refreshing token: %s", resp.Status)
}
defer resp.Body.Close()
var t oauth2.Token
if err := json.NewDecoder(resp.Body).Decode(&t); err != nil {
return "", "", errors.Wrap(err, "decoding refreshed token")
}
// remove the old groups from the groups cache
delete(a.groupsCache, access)
return t.AccessToken, t.RefreshToken, nil
}
// Authenticate takes in a auth token `access` and returns UserInfo from that token
// it is caller's responsibility to inform the user that the access token has been refreshed
func (a *Auth) Authenticate(access, refresh string) (*UserInfo, error) {
// clean up the cache every 30 minutes or so
if time.Since(a.lastCacheClean) >= 30*time.Minute {
a.cleanCache()
}
if len(access) == 0 {
return nil, fmt.Errorf("auth token is empty")
}
// NOTE: we are using ParseUnverified here because the IDP validates the
// token's signature when we get the user's groups, we just need to make
// sure it's not expired and is well-formed
token, _, err := new(jwt.Parser).ParseUnverified(access, &jwt.MapClaims{})
// well-formed-ness check
if token == nil || token.Claims == nil || err != nil {
return nil, fmt.Errorf("parsing auth token: %v", err)
}
claims := *token.Claims.(*jwt.MapClaims)
// expiry check
if exp, ok := claims["exp"]; ok {
var expiry int64
switch v := exp.(type) {
case string:
expiry, err = strconv.ParseInt(v, 10, 64)
if err != nil {
return nil, fmt.Errorf("parsing exp string: %v", err)
}
case float64:
expiry = int64(v)
case int64:
expiry = v
}
if expiry < time.Now().UTC().Unix() {
access, refresh, err = a.refreshToken(access, refresh)
if err != nil {
return nil, fmt.Errorf("token is expired: %w", err)
}
}
}
userInfo := UserInfo{
Token: access,
RefreshToken: refresh,
Groups: []Group{},
}
if uid, ok := claims["oid"].(string); ok {
userInfo.UserID = uid
}
if name, ok := claims["name"].(string); ok {
userInfo.UserName = name
}
if userInfo.Groups, err = a.getGroups(access); err != nil {
return nil, errors.Wrap(err, "getting groups")
}
return &userInfo, nil
}
// cleanCache removes old items from our cache
func (a *Auth) cleanCache() {
for access, tkn := range a.groupsCache {
// if it's been more than 24 hours since the groups were cached
if time.Since(tkn.cacheTime) >= 24*time.Hour {
// remove it from our cache
delete(a.groupsCache, access)
}
}
a.lastCacheClean = time.Now()
}
// Login redirects a user to login to their configured oAuth authorize endpoint
func (a *Auth) Login(w http.ResponseWriter, r *http.Request) {
authURL := a.oAuthConfig.AuthCodeURL(a.oAuthConfig.Endpoint.AuthURL)
http.Redirect(w, r, authURL, http.StatusTemporaryRedirect)
}
// Logout clears out the user's cookie, removes the token from our cache, and
// redirects user to IdP's logout endpoint
func (a *Auth) Logout(w http.ResponseWriter, r *http.Request) {
// remove the access token from a.groupsCache
if access, err := r.Cookie(a.accessCookieName); err == nil {
delete(a.groupsCache, access.Value)
}
// clear cookie
http.SetCookie(w, &http.Cookie{
Name: a.accessCookieName,
Value: "",
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: time.Unix(0, 0),
})
http.SetCookie(w, &http.Cookie{
Name: a.refreshCookieName,
Value: "",
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: time.Unix(0, 0),
})
http.Redirect(w, r, fmt.Sprintf("%s?post_logout_redirect_uri=%s/", a.logoutEndpoint, a.fbURL), http.StatusTemporaryRedirect)
}
// Redirect handles the oAuth /redirect endpoint. It gets an access token and
// returns it to the user in the form of a cookie
func (a *Auth) Redirect(w http.ResponseWriter, r *http.Request) {
token, err := a.oAuthConfig.Exchange(r.Context(), r.FormValue("code"), oauth2.AccessTypeOffline)
if err != nil {
a.logger.Warnf("getting token from IdP: %+v", err)
http.Error(w, "Bad Request", http.StatusBadRequest)
return
}
a.SetCookie(w, token.AccessToken, token.RefreshToken, token.Expiry)
http.Redirect(w, r, "/", http.StatusTemporaryRedirect)
}
// getGroups gets the group membership for a given token from configured IdP
func (a *Auth) getGroups(token string) ([]Group, error) {
var groups Groups
gc, ok := a.groupsCache[token]
if ok && (time.Since(gc.cacheTime) < a.cacheTTL) && len(gc.groups) > 0 {
return gc.groups, nil
}
nextLink := a.groupEndpoint
for nextLink != "" {
req, err := http.NewRequest("GET", nextLink, nil)
if err != nil {
return nil, errors.Wrap(err, "creating new request to group endpoint")
}
req.Header.Add("Authorization", fmt.Sprintf("Bearer %s", token))
response, err := http.DefaultClient.Do(req)
if err != nil {
return nil, errors.Wrap(err, "getting group membership info")
}
if response.StatusCode != http.StatusOK {
return nil, fmt.Errorf("getting group membership info: %s", response.Status)
}
var g Groups
if err = json.NewDecoder(response.Body).Decode(&g); err != nil {
return groups.Groups, errors.Wrap(err, "failed unmarshalling group membership response")
}
response.Body.Close()
groups.Groups = append(groups.Groups, g.Groups...)
nextLink = g.NextLink
}
if len(groups.Groups) == 0 {
return nil, fmt.Errorf("no groups found")
}
a.groupsCache[token] = cachedGroups{
cacheTime: time.Now(),
groups: groups.Groups,
}
return groups.Groups, nil
}
func (a *Auth) SetCookie(w http.ResponseWriter, access, refresh string, expiry time.Time) error {
http.SetCookie(w, &http.Cookie{
Name: a.refreshCookieName,
Value: refresh,
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: expiry,
})
http.SetCookie(w, &http.Cookie{
Name: a.accessCookieName,
Value: access,
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: expiry,
})
return nil
}
func (a *Auth) SetGRPCMetadata(ctx context.Context, md metadata.MD, access, refresh string) (context.Context, error) {
mCookies := map[string]string{}
if c, ok := md["cookie"]; ok {
for _, cookie := range c {
name, val := parseCookie(cookie)
mCookies[name] = val
}
}
mCookies[a.accessCookieName] = access
mCookies[a.refreshCookieName] = refresh
cookies := []string{}
for name, val := range mCookies {
cookies = append(cookies, name+"="+val)
}
md["cookie"] = cookies
return metadata.NewIncomingContext(ctx, md), grpc.SetHeader(ctx, md)
}
func decodeHex(hexstr string) ([]byte, error) {
data, err := hex.DecodeString(hexstr)
if err != nil {
return nil, errors.Wrap(err, "decoding hex string to byte slice")
}
if len(data) != 32 {
return nil, fmt.Errorf("invalid key length")
}
return data, nil
}
func (a *Auth) convertIP(configuredIPs []string) error {
sz := len(configuredIPs)
nets := make([]net.IPNet, sz)
for i, ip := range configuredIPs {
// skip empty strings
if ip == "" {
sz--
continue
}
// for IPs passed without a subnet, append /32 to only allow 1 IP
// this step is needed because ParseCIDR method assumes a CIDR address
if !strings.Contains(ip, "/") {
ip = ip + "/32"
}
_, subnet, err := net.ParseCIDR(ip)
if err != nil {
return errors.Wrapf(err, "parsing CIDR for %v", ip)
}
nets[i] = *subnet
}
a.allowedNetworks = nets[:sz]
return nil
}
// if IP is in allowed networks, then return true to grant admin permissions
func (a *Auth) CheckAllowedNetworks(clientIP string) bool {
clientIP = strings.Split(clientIP, ":")[0]
convertedIP := net.ParseIP(clientIP)
for _, network := range a.allowedNetworks {
if network.Contains(convertedIP) {
return true
}
}
return false
}
func parseCookie(cookie string) (name, data string) {
vals := strings.Split(cookie, "=")
if len(vals) == 0 {
vals = []string{"", ""}
} else if len(vals) < 2 {
vals = append(vals, "")
}
return vals[0], vals[1]
}

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@ -1,760 +0,0 @@
package authn
import (
"bytes"
"context"
"encoding/hex"
"encoding/json"
"fmt"
"net"
"net/http"
"net/http/httptest"
"os"
"reflect"
"strconv"
"strings"
"testing"
"time"
"github.com/featurebasedb/featurebase/v3/logger"
"github.com/golang-jwt/jwt"
"google.golang.org/grpc"
"google.golang.org/grpc/metadata"
)
func NewTestAuth(t *testing.T) *Auth {
t.Helper()
var (
ClientID = "e9088663-eb08-41d7-8f65-efb5f54bbb71"
ClientSecret = "DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF"
AuthorizeURL = "https://login.microsoftonline.com/4a137d66-d161-4ae4-b1e6-07e9920874b8/oauth2/v2.0/authorize"
TokenURL = "https://login.microsoftonline.com/4a137d66-d161-4ae4-b1e6-07e9920874b8/oauth2/v2.0/token"
GroupEndpointURL = "https://graph.microsoft.com/v1.0/me/transitiveMemberOf/microsoft.graph.group?$count=true"
LogoutURL = "https://login.microsoftonline.com/common/oauth2/v2.0/logout"
Scopes = []string{"https://graph.microsoft.com/.default", "offline_access"}
Key = "DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF"
configuredIPs = []string{}
)
a, err := NewAuth(
logger.NewStandardLogger(os.Stdout),
"http://localhost:10101/",
Scopes,
AuthorizeURL,
TokenURL,
GroupEndpointURL,
LogoutURL,
ClientID,
ClientSecret,
Key,
configuredIPs,
)
if err != nil {
t.Fatalf("building auth object%s", err)
}
return a
}
func TestSetGRPCMetadata(t *testing.T) {
a := NewTestAuth(t)
for name, md := range map[string]metadata.MD{
"empty": {},
"something": {"cookie": []string{a.accessCookieName + "=something"}},
"somethingElse": {"cookie": []string{
a.accessCookieName + "=something",
a.refreshCookieName + "=something",
}},
"otherCookies": {"cookie": []string{a.accessCookieName + "=something", "blah=blah"}},
} {
t.Run(name, func(t *testing.T) {
ogCookies := md["cookie"]
ctx := grpc.NewContextWithServerTransportStream(
metadata.NewIncomingContext(context.TODO(),
md,
),
NewServerTransportStream(),
)
md, ok := metadata.FromIncomingContext(ctx)
if !ok {
t.Fatalf("expected ok, got: %v", ok)
}
ctx, err := a.SetGRPCMetadata(ctx, md, "accesstoken!", "refreshtoken!")
if err != nil {
t.Fatalf("expected no errors, got: %v", err)
}
if err := grpc.SendHeader(ctx, md); err != nil {
t.Fatalf("expected no errors, got: %v", err)
}
md, ok = metadata.FromIncomingContext(ctx)
if !ok {
t.Fatalf("expected ok, got: %v", ok)
}
c, ok := md["cookie"]
if !ok {
t.Fatalf("expected ok, got: %v", ok)
}
var accessCookie, refreshCookie string
for _, cookie := range c {
if strings.HasPrefix(cookie, a.accessCookieName) {
accessCookie = cookie
} else if strings.HasPrefix(cookie, a.refreshCookieName) {
refreshCookie = cookie
}
if refreshCookie != "" && accessCookie != "" {
break
}
}
exp := a.accessCookieName + "=accesstoken!"
if accessCookie != exp {
t.Fatalf("expected '%v', got '%v'", exp, accessCookie)
}
exp = a.refreshCookieName + "=refreshtoken!"
if refreshCookie != exp {
t.Fatalf("expected '%v', got '%v'", exp, refreshCookie)
}
for _, cookie := range c {
if strings.HasPrefix(cookie, a.accessCookieName) || strings.HasPrefix(cookie, a.refreshCookieName) {
continue
}
found := false
for _, ogCookie := range ogCookies {
if cookie == ogCookie {
found = true
break
}
}
if !found {
t.Fatal("SetGRPCMetadata did not maintain the previous cookie list")
}
}
})
}
}
func TestAuth(t *testing.T) {
a := NewTestAuth(t)
t.Run("SetCookie", func(t *testing.T) {
w := httptest.NewRecorder()
err := a.SetCookie(w, "access", "refresh", time.Now().Add(time.Hour))
if err != nil {
t.Fatalf("expected no errors, got: %v", err)
}
if w.Result().Cookies()[0].Value == "" {
t.Errorf("expected something, got empty string")
}
if got, want := w.Result().Cookies()[0].Path, "/"; got != want {
t.Fatalf("path=%s, want %s", got, want)
}
})
t.Run("KeyLength", func(t *testing.T) {
_, err := NewAuth(
logger.NewStandardLogger(os.Stdout),
"http://localhost:10101/",
[]string{"https://graph.microsoft.com/.default", "offline_access"},
"https://login.microsoftonline.com/4a137d66-d161-4ae4-b1e6-07e9920874b8/oauth2/v2.0/authorize",
"https://login.microsoftonline.com/4a137d66-d161-4ae4-b1e6-07e9920874b8/oauth2/v2.0/token",
"https://graph.microsoft.com/v1.0/me/transitiveMemberOf/microsoft.graph.group?$count=true",
"https://login.microsoftonline.com/common/oauth2/v2.0/logout",
"e9088663-eb08-41d7-8f65-efb5f54bbb71",
"DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF",
"DEADBEEFD",
[]string{},
)
if err == nil || !strings.Contains(err.Error(), "decoding secret key") {
t.Fatalf("expected error decoding secret key got: %v", err)
}
})
t.Run("GetSecretKey", func(t *testing.T) {
want, _ := hex.DecodeString("DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF")
if got := a.SecretKey(); !bytes.Equal(got, want) {
t.Fatalf("expected %v, got %v", got, want)
}
})
}
func TestAuthenticate(t *testing.T) {
cases := []struct {
name string
uid string
uname string
exp int64
refresh bool
refreshToken string
malformed bool
empty bool
groups []Group
err error
}{
{
name: "GoodToken",
uid: "42",
uname: "A. Token",
groups: []Group{
{
GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
GroupName: "adminGroup",
},
},
},
{
name: "Malformed",
malformed: true,
err: fmt.Errorf("parsing auth token: token contains an invalid number of segments"),
},
{
name: "Empty",
empty: true,
err: fmt.Errorf("auth token is empty"),
},
{
name: "ExpiredTokenNoRefresh",
uid: "42",
uname: "A. Token",
groups: []Group{
{
GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
GroupName: "adminGroup",
},
},
exp: -17764800,
err: fmt.Errorf("token is expired: refreshing token: 400 Bad Request"),
},
{
name: "ExpiredTokenYesRefresh",
uid: "42",
uname: "A. Token",
groups: []Group{
{
GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
GroupName: "adminGroup",
},
},
refresh: true,
refreshToken: "refreshToken",
exp: -17764800,
},
{
name: "ExpiredTokenYesRefreshButError",
uid: "42",
uname: "A. Token",
groups: []Group{
{
GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
GroupName: "adminGroup",
},
},
refresh: true,
refreshToken: "blah!!",
exp: -17764800,
err: fmt.Errorf("token is expired: refreshing token: 403 Forbidden"),
},
}
for _, test := range cases {
t.Run(test.name, func(t *testing.T) {
// setup the test
a := NewTestAuth(t)
token := ""
var err error
if !test.malformed && !test.empty {
tkn := jwt.New(jwt.SigningMethodHS256)
claims := tkn.Claims.(jwt.MapClaims)
claims["oid"] = test.uid
claims["name"] = test.uname
if test.exp != 0 {
claims["exp"] = float64(test.exp)
}
token, err = tkn.SignedString(a.SecretKey())
if err != nil {
t.Fatalf("unexpected error when signing token %v", err)
}
} else if !test.empty {
token = "asdfasdfasdfasdF"
}
if len(test.groups) > 0 {
a.groupsCache[token] = cachedGroups{time.Now(), test.groups}
}
if test.refresh {
srv := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
if err := r.ParseForm(); err != nil {
t.Fatalf("unexpected error: %v", err)
}
refresh := r.Form.Get("refresh_token")
if refresh != test.refreshToken {
t.Fatalf("refresh token not passed properly, expected %v, got %v", test.refreshToken, refresh)
return
}
if refresh != "refreshToken" {
http.Error(w, "bad token", http.StatusForbidden)
}
tkn := jwt.New(jwt.SigningMethodHS256)
claims := tkn.Claims.(jwt.MapClaims)
claims["oid"] = test.uid
claims["name"] = test.uname
expiry := float64(time.Now().Add(2 * time.Hour).Unix())
claims["exp"] = expiry
fresh, err := tkn.SignedString(a.SecretKey())
if err != nil {
t.Fatalf("unexpected error when signing token %v", err)
}
a.groupsCache[fresh] = cachedGroups{time.Now(), test.groups}
fmt.Fprintf(w, `{"access_token": "`+fresh+`", "refresh_token": "blah", "token_type": "bearer", "expires": `+strconv.FormatFloat(expiry, 'f', 0, 64)+` }`)
}))
defer srv.Close()
a.oAuthConfig.Endpoint.TokenURL = srv.URL
}
// do the actual testing
uinfo, err := a.Authenticate(token, test.refreshToken)
// okay this part kind of sucks bc we need to check errors and i
// dont want to write a whole new test for things that should have
// errors just to avoid this mess. errors.Is doesn't work either
if (test.err == nil && err != nil) || (test.err != nil && err == nil) {
t.Fatalf("expected %v, but got %v", test.err, err)
} else if test.err != nil && err != nil {
if test.err.Error() != err.Error() {
t.Fatalf("expected %v, but got %v", test.err, err)
} else {
return
}
}
if !reflect.DeepEqual(uinfo.Groups, test.groups) {
t.Fatalf("expected %v, got %v", test.groups, uinfo.Groups)
}
if !reflect.DeepEqual(uinfo.UserID, test.uid) {
t.Fatalf("expected %v, got %v", test.uid, uinfo.UserID)
}
if !reflect.DeepEqual(uinfo.UserName, test.uname) {
t.Fatalf("expected %v, got %v", test.uname, uinfo.UserName)
}
})
}
}
func TestAuthenticate_CleanCache(t *testing.T) {
// this deserves its own test bc it has gross setup required
t.Run("should clean", func(t *testing.T) {
a := NewTestAuth(t)
now := time.Now()
a.groupsCache["oldy"] = cachedGroups{now.Add(-24 * time.Hour), []Group{}}
a.groupsCache["goldy"] = cachedGroups{now.Add(-4 * time.Hour), []Group{}}
a.lastCacheClean = now.Add(-45 * time.Minute)
_, _ = a.Authenticate("this doesn't matter", "this doesn't matter?")
if a.lastCacheClean.Sub(now) <= time.Nanosecond {
t.Fatalf("cache should have been cleaned")
}
if _, ok := a.groupsCache["oldy"]; ok {
t.Errorf("oldy should have been deleted")
}
if _, ok := a.groupsCache["goldy"]; !ok {
t.Errorf("goldy should not have been deleted")
}
})
t.Run("shouldn't clean", func(t *testing.T) {
a := NewTestAuth(t)
now := time.Now()
a.groupsCache["oldy"] = cachedGroups{now.Add(-24 * time.Hour), []Group{}}
a.groupsCache["goldy"] = cachedGroups{now.Add(-4 * time.Hour), []Group{}}
a.lastCacheClean = now
_, _ = a.Authenticate("this doesn't matter", "this doesn't matter?")
if a.lastCacheClean.Sub(now) >= time.Nanosecond {
t.Fatalf("cache should not have been cleaned")
}
if _, ok := a.groupsCache["oldy"]; !ok {
t.Errorf("oldy should not have been deleted")
}
if _, ok := a.groupsCache["goldy"]; !ok {
t.Errorf("goldy should not have been deleted")
}
})
}
func TestGetGroups(t *testing.T) {
a := NewTestAuth(t)
a.groupsCache = map[string]cachedGroups{
"the world is changed": {
cacheTime: time.Now(),
groups: []Group{
{
GroupID: "a han noston ned wilith",
GroupName: "I smell it in the air",
},
},
},
}
srvNext := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
body, err := json.Marshal(
Groups{
Groups: []Group{
{
GroupID: "han mathon ne chae",
GroupName: "I feel it in the earth",
},
},
},
)
if err != nil {
t.Fatalf("unexpected error marshalling groups response: %v", err)
}
fmt.Fprintf(w, "%s", body)
}))
defer srvNext.Close()
srv := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
body, err := json.Marshal(
Groups{
NextLink: srvNext.URL,
Groups: []Group{
{
GroupID: "han mathon ne nen",
GroupName: "i feel it in the water",
},
},
},
)
if err != nil {
t.Fatalf("unexpected error marshalling groups response: %v", err)
}
fmt.Fprintf(w, "%s", body)
}))
defer srv.Close()
a.groupEndpoint = srv.URL
for name, test := range map[string]struct {
token string
groups []Group
}{
"InCache": {
token: "the world is changed",
groups: []Group{
{
GroupID: "a han noston ned wilith",
GroupName: "I smell it in the air",
},
},
},
"NotInCache": {
token: "i smell it in the air",
groups: []Group{
{
GroupID: "han mathon ne nen",
GroupName: "i feel it in the water",
},
{
GroupID: "han mathon ne chae",
GroupName: "I feel it in the earth",
},
},
},
} {
t.Run(name, func(t *testing.T) {
if got, err := a.getGroups(test.token); err != nil || !reflect.DeepEqual(got, test.groups) {
t.Errorf("expected %v, nil, got %v, %v", test.groups, got, err)
}
})
}
}
func TestDecodeHex(t *testing.T) {
t.Run("cantDecode", func(t *testing.T) {
_, err := decodeHex("gggg")
if err == nil {
t.Fatalf("expected err cannot decode slice, got nil")
}
})
t.Run("tooSmall", func(t *testing.T) {
_, err := decodeHex("DEADBEEF")
if err == nil {
t.Fatalf("expected err wrong length, got nil")
}
})
t.Run("tooBig", func(t *testing.T) {
_, err := decodeHex("DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF")
if err == nil {
t.Fatalf("expected err wrong length, got nil")
}
})
t.Run("justRight", func(t *testing.T) {
_, err := decodeHex("DEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEFDEADBEEF")
if err != nil {
t.Fatalf("expected nil, got %v", err)
}
})
}
func TestHandlers(t *testing.T) {
a := NewTestAuth(t)
t.Run("login", func(t *testing.T) {
req := httptest.NewRequest("GET", "/login", nil)
w := httptest.NewRecorder()
a.Login(w, req)
resp := w.Result()
if resp.StatusCode != http.StatusTemporaryRedirect {
t.Fatalf("expected redirect, got %v", resp.StatusCode)
}
redirect := a.oAuthConfig.AuthCodeURL(a.oAuthConfig.Endpoint.AuthURL)
if got, err := resp.Location(); err != nil || got.String() != redirect {
t.Fatalf("expected %v, got %v", redirect, got.Path)
}
})
t.Run("logout", func(t *testing.T) {
req := httptest.NewRequest("GET", "/logout", nil)
w := httptest.NewRecorder()
req.AddCookie(
&http.Cookie{
Name: a.accessCookieName,
Value: "test",
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: time.Unix(3000000, 0),
},
)
req.AddCookie(
&http.Cookie{
Name: a.refreshCookieName,
Value: "test",
Path: "/",
Secure: true,
HttpOnly: true,
SameSite: http.SameSiteStrictMode,
Expires: time.Unix(3000000, 0),
},
)
a.groupsCache["test"] = cachedGroups{}
a.Logout(w, req)
resp := w.Result()
if resp.StatusCode != http.StatusTemporaryRedirect {
t.Fatalf("expected redirect, got %v", resp.StatusCode)
}
redirect := fmt.Sprintf("%s?post_logout_redirect_uri=%s/", a.logoutEndpoint, a.fbURL)
if got, err := resp.Location(); err != nil || got.String() != redirect {
t.Fatalf("expected %v, got %v", redirect, got.Path)
}
for _, c := range resp.Cookies() {
if c.Name == a.accessCookieName || c.Name == a.refreshCookieName {
if c.Value != "" {
t.Fatalf("cookie not set to empty value!")
}
want := time.Unix(0, 0).Unix()
got := c.Expires.Unix()
if want != got {
t.Fatalf("expected %v, got %v", want, got)
}
}
}
if _, ok := a.groupsCache["test"]; ok {
t.Fatalf("groups not deleted!")
}
})
t.Run("redirectGood", func(t *testing.T) {
req := httptest.NewRequest("GET", "/redirect", nil)
w := httptest.NewRecorder()
tkn := jwt.New(jwt.SigningMethodHS256)
claims := tkn.Claims.(jwt.MapClaims)
claims["oid"] = "user id"
claims["name"] = "user name"
expiresIn := 2 * time.Hour
exp := time.Now().Add(expiresIn)
expiry := float64(exp.Unix())
claims["exp"] = expiry
fresh, err := tkn.SignedString(a.SecretKey())
if err != nil {
t.Fatalf("unexpected error when signing token %v", err)
}
srv := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
body := `{"access_token": "` + fresh + `", "refresh_token": "blah", "expires_in": "` + strconv.Itoa(int(expiresIn.Seconds())) + `"}`
w.Header().Set("Content-Type", "application/json; charset=utf-8")
w.WriteHeader(http.StatusOK)
w.Write([]byte(body))
}))
a.oAuthConfig.Endpoint.TokenURL = srv.URL
a.Redirect(w, req)
resp := w.Result()
if resp.StatusCode != http.StatusTemporaryRedirect {
t.Fatalf("expected redirect, got %v", resp.StatusCode)
}
if got, err := resp.Location(); err != nil || got.String() != "/" {
t.Fatalf("expected %v, got %v", "/", got.Path)
}
cookies := resp.Cookies()
for _, c := range cookies {
if c.Name == a.accessCookieName && c.Value != fresh {
t.Fatalf("expected %v, got %v", exp, c.Value)
} else if c.Name == a.refreshCookieName && c.Value != "blah" {
t.Fatalf("expected %v, got %v", "blah", c.Value)
}
}
})
t.Run("redirectBad", func(t *testing.T) {
req := httptest.NewRequest("GET", "/redirect", nil)
w := httptest.NewRecorder()
srv := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
http.Error(w, "Server Error", http.StatusInternalServerError)
}))
a.oAuthConfig.Endpoint.TokenURL = srv.URL
a.Redirect(w, req)
resp := w.Result()
if resp.StatusCode != http.StatusBadRequest {
t.Fatalf("expected BadRequest, got %v", resp.StatusCode)
}
})
}
// This type is used for mocking ServerTransportStreams in tests
type ServerTransportStream struct {
md metadata.MD
method string
}
func NewServerTransportStream() *ServerTransportStream {
return &ServerTransportStream{
md: metadata.MD{},
method: "test",
}
}
func (s *ServerTransportStream) Method() string {
return s.method
}
func (s *ServerTransportStream) SetHeader(md metadata.MD) error {
s.md = md
return nil
}
func (s *ServerTransportStream) SendHeader(md metadata.MD) error {
_ = md
return nil
}
func (s *ServerTransportStream) SetTrailer(md metadata.MD) error {
_ = md
return nil
}
func TestCleanOAuthConfig(t *testing.T) {
a := NewTestAuth(t)
res := a.CleanOAuthConfig()
assertEqual("", res.ClientSecret, t)
assertEqual(a.oAuthConfig.ClientID, res.ClientID, t)
assertEqual(a.oAuthConfig.RedirectURL, res.RedirectURL, t)
assertEqual(a.oAuthConfig.Scopes, res.Scopes, t)
assertEqual(a.oAuthConfig.Endpoint, res.Endpoint, t)
}
func assertEqual(exp, got interface{}, t *testing.T) {
if !reflect.DeepEqual(exp, got) {
t.Fatalf("expected %v, got %v", exp, got)
}
}
func TestCheckAllowedNetworks(t *testing.T) {
tests := []struct {
requestIP string
configuredIPs []string
isAdmin bool
}{
{
requestIP: "10.0.0.1",
configuredIPs: []string{"10.0.0.1"},
isAdmin: true,
},
{
requestIP: "10.0.0.3",
configuredIPs: []string{"10.0.0.1", "10.0.0.2"},
isAdmin: false,
},
{
requestIP: "10.0.0.2",
configuredIPs: []string{"10.0.0.1/30"},
isAdmin: true,
},
// it is possible for the client IP to have a port
{
requestIP: "10.0.0.2:22",
configuredIPs: []string{"10.0.0.1/30"},
isAdmin: true,
},
{
requestIP: "10.1.0.3",
configuredIPs: []string{"10.0.0.1/32"},
isAdmin: false,
},
{
requestIP: "10.0.0.254",
configuredIPs: []string{"10.0.0.1/24"},
isAdmin: true,
},
}
for i, test := range tests {
t.Run(fmt.Sprintf("network-%d", i), func(t *testing.T) {
a := NewTestAuth(t)
if err := a.convertIP(test.configuredIPs); err != nil {
t.Fatalf("failed to convert IPs from strings to net.IP: %v", err)
}
got := a.CheckAllowedNetworks(test.requestIP)
if got != test.isAdmin {
t.Fatalf("expected %v, got %v", test.isAdmin, got)
}
})
}
}
func TestConvertIP(t *testing.T) {
tests := []struct {
configuredIPs []string
convertedIPs []net.IPNet
}{
{
configuredIPs: []string{"10.0.0.1"},
convertedIPs: []net.IPNet{
{IP: net.ParseIP("10.0.0.1"), Mask: net.CIDRMask(32, 32)},
},
},
{
configuredIPs: []string{"10.0.0.1/30"},
convertedIPs: []net.IPNet{
{IP: net.ParseIP("10.0.0.0"), Mask: net.CIDRMask(30, 32)},
},
},
}
for i, test := range tests {
t.Run(fmt.Sprintf("network-%d", i), func(t *testing.T) {
a := NewTestAuth(t)
if err := a.convertIP(test.configuredIPs); err != nil {
t.Fatalf("failed to convert IPs from strings to net.IP: %v", err)
}
if len(a.allowedNetworks) != len(test.convertedIPs) {
t.Fatalf("expected len of %v networks, got %v", len(test.convertedIPs), len(a.allowedNetworks))
}
for i := range a.allowedNetworks {
expected, got := test.convertedIPs[i], a.allowedNetworks[i]
if got.IP.String() != expected.IP.String() {
t.Fatalf("for IP, expected %v, got %v", expected.IP, got.IP)
}
if got.Mask.String() != expected.Mask.String() {
t.Fatalf("for mask, expected %v, got %v", expected.Mask.String(), got.Mask.String())
}
}
})
}
}

View file

@ -1,54 +0,0 @@
// Copyright 2022 Molecula Corp (DBA FeatureBase). All rights reserved.
package authn
import "context"
// Empty struct to avoid allocations
type contextKeyAccessToken struct{}
type contextKeyRefreshToken struct{}
type contextKeyUserInfo struct{}
type contextKeyIndexes struct{}
// GetAccessToken gets the access token from a context.
func GetAccessToken(ctx context.Context) (token string, ok bool) {
token, ok = ctx.Value(contextKeyAccessToken{}).(string)
return
}
// WithAccessToken makes a new Context with an access token.
func WithAccessToken(ctx context.Context, token string) context.Context {
return context.WithValue(ctx, contextKeyAccessToken{}, token)
}
// GetRefreshToken gets the refresh token from a context.
func GetRefreshToken(ctx context.Context) (token string, ok bool) {
token, ok = ctx.Value(contextKeyRefreshToken{}).(string)
return
}
// WithRefreshToken makes a new Context with a refresh token.
func WithRefreshToken(ctx context.Context, token string) context.Context {
return context.WithValue(ctx, contextKeyRefreshToken{}, token)
}
// GetUserInfo gets the UserInfo from a context.
func GetUserInfo(ctx context.Context) (userInfo *UserInfo, ok bool) {
userInfo, ok = ctx.Value(contextKeyUserInfo{}).(*UserInfo)
return
}
// WithUserInfo makes a new Context with UserInfo.
func WithUserInfo(ctx context.Context, userInfo *UserInfo) context.Context {
return context.WithValue(ctx, contextKeyUserInfo{}, userInfo)
}
// GetIndexes get the indices from a context.
func GetIndexes(ctx context.Context) (indexes []string, ok bool) {
indexes, ok = ctx.Value(contextKeyIndexes{}).([]string)
return
}
// WithIndexes makes a new Context with a []string containing the indicies.
func WithIndexes(ctx context.Context, indexes []string) context.Context {
return context.WithValue(ctx, contextKeyUserInfo{}, indexes)
}

View file

@ -1,130 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package authz
import (
"fmt"
"io"
"github.com/featurebasedb/featurebase/v3/authn"
"gopkg.in/yaml.v2"
)
type GroupPermissions struct {
Permissions map[string]map[string]Permission `yaml:"user-groups"`
Admin string `yaml:"admin"`
}
type Permission string
const (
None Permission = ""
Read Permission = "read"
Write Permission = "write"
Admin Permission = "admin"
)
// Satisfies returns whether `p` satisfies the permissions required by `b`
func (p Permission) Satisfies(b Permission) bool {
switch p {
case "":
return b == ""
case "read":
return b == "" || b == "read"
case "write":
return b == "" || b == "read" || b == "write"
case "admin":
return b == "" || b == "read" || b == "write" || b == "admin"
}
return false
}
func (p *GroupPermissions) ReadPermissionsFile(permsFile io.Reader) (err error) {
permsData, err := io.ReadAll(permsFile)
if err != nil {
return fmt.Errorf("reading permissions failed with error: %s", err)
}
err = yaml.UnmarshalStrict(permsData, &p)
if err != nil {
return fmt.Errorf("unmarshalling permissions failed with error: %s", err)
}
return
}
func (p *GroupPermissions) GetPermissions(user *authn.UserInfo, index string) (permission Permission, errors error) {
groups := user.Groups
if admin := p.IsAdmin(groups); admin {
return Admin, nil
}
allPermissions := map[Permission]bool{
Write: false,
Read: false,
}
if len(groups) == 0 {
return None, fmt.Errorf("user is not part of any groups in identity provider")
}
var groupsDenied []string
for _, group := range groups {
if _, ok := p.Permissions[group.GroupID]; ok {
if perm, ok := p.Permissions[group.GroupID][index]; ok {
allPermissions[perm] = true
} else {
return None, fmt.Errorf("user %s does not have permission to index %s", user.UserID, index)
}
} else {
groupsDenied = append(groupsDenied, group.GroupID)
}
}
if len(groupsDenied) == len(groups) {
return None, fmt.Errorf("group(s) %s does not have permission to FeatureBase", groupsDenied)
}
if allPermissions[Write] {
return Write, nil
} else if allPermissions[Read] {
return Read, nil
} else {
return None, fmt.Errorf("no permissions found")
}
}
func (p *GroupPermissions) IsAdmin(groups []authn.Group) bool {
for _, group := range groups {
if p.Admin == group.GroupID {
return true
}
}
return false
}
func (p *GroupPermissions) GetAuthorizedIndexList(groups []authn.Group, desiredPermission Permission) (indexList []string) {
// if user is admin, find all indexes in permissions file and return them
if p.IsAdmin(groups) {
for groupId := range p.Permissions {
for index := range p.Permissions[groupId] {
indexList = append(indexList, index)
}
}
return indexList
}
for _, group := range groups {
if _, ok := p.Permissions[group.GroupID]; ok {
for index, permission := range p.Permissions[group.GroupID] {
if permission.Satisfies(desiredPermission) {
indexList = append(indexList, index)
}
}
}
}
return indexList
}

View file

@ -1,305 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package authz_test
import (
"fmt"
"reflect"
"sort"
"strings"
"testing"
"github.com/featurebasedb/featurebase/v3/authn"
"github.com/featurebasedb/featurebase/v3/authz"
)
func TestAuth_ReadPermissionsFile(t *testing.T) {
singleInput := `user-groups:
"dca35310-ecda-4f23-86cd-876aee55906b":
"test": "read"
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
multiInput := `user-groups:
"dca35310-ecda-4f23-86cd-876aee55906b":
"test": "read"
"test2": "write"
"dca35310-ecda-4f23-86cd-876aee559900":
"test": "write"
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
singlePermission := authz.GroupPermissions{
Permissions: map[string]map[string]authz.Permission{
"dca35310-ecda-4f23-86cd-876aee55906b": {"test": authz.Read},
},
Admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
}
multiPermission := authz.GroupPermissions{
Permissions: map[string]map[string]authz.Permission{
"dca35310-ecda-4f23-86cd-876aee55906b": {"test": authz.Read, "test2": authz.Write},
"dca35310-ecda-4f23-86cd-876aee559900": {"test": authz.Write}},
Admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
}
tests := []struct {
input string
output authz.GroupPermissions
}{
{singleInput, singlePermission},
{multiInput, multiPermission},
}
for i, test := range tests {
t.Run(fmt.Sprintf("%d", i), func(t *testing.T) {
permFile := strings.NewReader(test.input)
var p authz.GroupPermissions
err := p.ReadPermissionsFile(permFile)
if err != nil {
t.Fatalf("readPermissionsFile error: %s", err)
}
if !reflect.DeepEqual(p, test.output) {
t.Fatalf("expected output %s, but got %s", test.output, p)
}
},
)
}
}
func TestAuth_GetPermissions(t *testing.T) {
// initializes different example of permissions file in yaml
permissions1 := `"user-groups":
"dca35310-ecda-4f23-86cd-876aee55906b":
"test": "read"
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
permissions2 := `"user-groups":
"dca35310-ecda-4f23-86cd-876aee559900":
"test": "write"
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
permissions3 := `"user-groups":
"dca35310-ecda-4f23-86cd-876aee55906b":
"test": "write"
"test2": "read"
"dca35310-ecda-4f23-86cd-876aee559900":
"test": "read"
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
permissions4 := `"user-groups":
"dca35310-ecda-4f23-86cd-876aee559900":
"test": ""
admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe"`
// initializes groups that are returned from identity provider
groupName := "name"
groupsList1 := []authn.Group{}
groupsList2 := []authn.Group{{
GroupID: "fake-group",
GroupName: groupName}}
groupsList3 := []authn.Group{
{GroupID: "dca35310-ecda-4f23-86cd-876aee55906b", GroupName: groupName},
{GroupID: "dca35310-ecda-4f23-86cd-876aee559900", GroupName: groupName},
}
groupsList4 := []authn.Group{{GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe", GroupName: groupName}}
tests := []struct {
yamlData string
groups []authn.Group
index string
userAccess authz.Permission
err string
}{
{
permissions1,
groupsList1,
"test",
authz.None,
"user is not part of any groups in identity provider",
},
{
permissions1,
groupsList3,
"test1",
authz.None,
"does not have permission to index",
},
{
permissions2,
groupsList2,
"test",
authz.None,
"does not have permission to FeatureBase",
},
{
permissions1,
groupsList3,
"test",
authz.Read,
"",
},
{
permissions2,
groupsList3,
"test",
authz.Write,
"",
},
{
permissions3,
groupsList4,
"test",
authz.Admin,
"",
},
{
permissions4,
groupsList3,
"test",
authz.None,
"no permissions found",
},
}
for i, test := range tests {
t.Run(fmt.Sprintf("%d", i), func(t *testing.T) {
permFile := strings.NewReader(test.yamlData)
var p authz.GroupPermissions
if err := p.ReadPermissionsFile(permFile); err != nil {
t.Errorf("Error: %s", err)
}
p1, err := p.GetPermissions(&authn.UserInfo{Groups: test.groups}, test.index)
if p1 != test.userAccess {
t.Errorf("expected permission to be %s, but got %s", test.userAccess, p1)
}
if err != nil {
if !strings.Contains(err.Error(), test.err) {
t.Errorf("expected error to contain %s, but got %s", test.err, err.Error())
}
}
})
}
}
func TestAuth_IsAdmin(t *testing.T) {
group1 := []authn.Group{
{GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe", GroupName: "admin-group"},
}
group2 := []authn.Group{
{GroupID: "dca35310-ecda-4f23-86cd-876aee55906b", GroupName: "group-name"},
}
groupPermissions := authz.GroupPermissions{
Permissions: map[string]map[string]authz.Permission{
"dca35310-ecda-4f23-86cd-876aee55906b": {"test": authz.Write},
},
Admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
}
tests := []struct {
groups []authn.Group
groupPermissions authz.GroupPermissions
output bool
}{
{
group1, groupPermissions, true,
},
{
group2, groupPermissions, false,
},
}
for i, test := range tests {
t.Run(fmt.Sprintf("%d", i), func(t *testing.T) {
p := test.groupPermissions
resp := p.IsAdmin(test.groups)
if resp != test.output {
t.Errorf("expected %t, but got %t", test.output, resp)
}
})
}
}
func TestAuth_GetAuthorizedIndexList(t *testing.T) {
group1 := []authn.Group{
{GroupID: "dca35310-ecda-4f23-86cd-876aee55906b", GroupName: "group-name"},
}
group2 := []authn.Group{
{GroupID: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe", GroupName: "admin-group"},
}
group3 := []authn.Group{
{GroupID: "dca35310-ecda-4f23-86cd-876aee559900", GroupName: "group-name"},
}
p := authz.GroupPermissions{
Permissions: map[string]map[string]authz.Permission{
"dca35310-ecda-4f23-86cd-876aee55906b": {
"test1": authz.Read,
"test2": authz.Write,
},
"dca35310-ecda-4f23-86cd-876aee559900": {
"test3": authz.Read,
},
},
Admin: "ac97c9e2-346b-42a2-b6da-18bcb61a32fe",
}
tests := []struct {
groups []authn.Group
permission authz.Permission
output []string
}{
{
group1,
authz.Read,
[]string{"test1", "test2"},
},
{
group1,
authz.Write,
[]string{"test2"},
},
{
group3,
authz.Write,
nil,
},
{
group2,
authz.Read,
[]string{"test1", "test2", "test3"},
},
{
group2,
authz.Write,
[]string{"test1", "test2", "test3"},
},
}
for i, test := range tests {
t.Run(fmt.Sprintf("%d", i), func(t *testing.T) {
indexList := p.GetAuthorizedIndexList(test.groups, test.permission)
sort.Strings(indexList)
if !reflect.DeepEqual(indexList, test.output) {
t.Errorf("expected %s, but got %s", test.output, indexList)
}
})
}
}

View file

@ -1,11 +0,0 @@
ARG GO_VERSION=1.19
FROM golang:${GO_VERSION}
WORKDIR /go/src/github.com/featurebasedb/featurebase/
COPY . .
WORKDIR /go/src/github.com/featurebasedb/featurebase/batch/
CMD ["go","test","-v","-mod=vendor","-tags=odbc,dynamic","./..."]

View file

@ -1,8 +0,0 @@
FROM ubuntu:18.04
RUN ["apt-get", "update", "-y"]
RUN ["apt-get", "install", "-y", "curl", "netcat"]
ADD wait.sh /wait
ENTRYPOINT ["/wait"]

View file

@ -1,44 +0,0 @@
GO ?= go
# We allow setting a custom docker-compose "project". Multiple of the
# same docker-compose environment can exist simultaneously as long as
# they use different projects (the project name is prepended to
# container names and such). This is useful in a CI environment where
# we might be running multiple instances of the tests concurrently.
PROJECT ?= batch
DOCKER_COMPOSE = docker-compose -p $(PROJECT)
vendor: ../go.mod
$(GO) mod vendor
build-%:
$(DOCKER_COMPOSE) build $*
test-all:
$(MAKE) startup
$(MAKE) test-run
$(MAKE) shutdown
start-all: build-wait
$(DOCKER_COMPOSE) up -d featurebase
$(DOCKER_COMPOSE) run -T wait featurebase curl --silent --fail http://featurebase:10101/status
startup: start-all
shutdown:
$(DOCKER_COMPOSE) down -v --remove-orphans
save-%-logs:
$(DOCKER_COMPOSE) logs $* > ./testdata/$(PROJECT)_$*_logs.txt
TCMD ?= ./...
# do "make startup", then e.g. "make test-run-local TCMD='-run=MyFavTest ./kafka'"
test-run-local: vendor
pwd
$(DOCKER_COMPOSE) build batch-test
$(DOCKER_COMPOSE) run -T batch-test go test -mod=vendor -tags=odbc,dynamic $(TCMD)
TPKG ?= ../...
test-run: vendor
$(DOCKER_COMPOSE) build batch-test
$(DOCKER_COMPOSE) run -T batch-test bash -c "set -o pipefail; go test -v -mod=vendor -tags=odbc,dynamic ./... -covermode=atomic -coverpkg=$(TPKG) -coverprofile=/testdata/$(PROJECT)_base_coverage.out"

View file

@ -1,46 +0,0 @@
# batch
The `batch` package provides a standard tool set for batching records in a way
that is most performant for ingesting those records into FeatureBase. The main
implementation is `Batch` (which can be initated with the `NewBatch()`
function). The `NewBatch()` function takes an `Importer` which contains all of
the methods required to interact with FeatureBase; these include methods for
doing string/id translation as well as for importing shards of data.
IDK uses the `batch` package internally. Another example where the `batch`
package is used in the `sql3` package. When an "INSERT INTO" statement is
executed, the SQL engine uses a `Batch` to do key translation and build import
batches prior to doing the final import.
## Integration tests
To run the tests, you will need to install the following dependencies:
1. [Docker](https://docs.docker.com/install/)
2. [Docker Compose](https://docs.docker.com/compose/install/)
In addition to these dependancies, you will need to be added to the molecula [Gitlab](https://registry.gitlab.com/molecula) account.
First start the test environment. This is a docker-compose environment that includes featurebase.
make startup
To build and run the integration tests, run:
make test-run-local
Then to shut down the test environment, run:
make shutdown
The previous command is equivalent to running the following:
make startup
sleep 30 # wait for services to come up
make test-run
make shutdown
To run an individual test, you can run the command directly using docker-compose. Note that you must run `docker-compose build batch-test` for docker to run the latest code. Modify the following as needed:
make startup
docker-compose build batch-test
docker-compose run batch-test /usr/local/go/bin/go test -count=1 -mod=vendor -run=TestCmdMainOne .

File diff suppressed because it is too large Load diff

File diff suppressed because it is too large Load diff

View file

@ -1,20 +0,0 @@
package batch
import (
"time"
"github.com/featurebasedb/featurebase/v3/dax"
)
// Batcher is an interface implemented by anything which can allocate new
// batches.
type Batcher interface {
NewBatch(cfg Config, tbl *dax.Table, fields []*dax.Field) (RecordBatch, error)
}
// Config is the configuration options passed to NewBatch for any implementation
// of the Batcher interface.
type Config struct {
Size int
MaxStaleness time.Duration
}

View file

@ -1,145 +0,0 @@
package batch
import (
"time"
featurebase "github.com/featurebasedb/featurebase/v3"
"github.com/featurebasedb/featurebase/v3/errors"
)
var (
MinTimestampNano = time.Unix(-1<<32, 0).UTC() // 1833-11-24T17:31:44Z
MaxTimestampNano = time.Unix(1<<32, 0).UTC() // 2106-02-07T06:28:16Z
MinTimestamp = time.Unix(-62135596799, 0).UTC() // 0001-01-01T00:00:01Z
MaxTimestamp = time.Unix(253402300799, 0).UTC() // 9999-12-31T23:59:59Z
ErrTimestampOutOfRange = errors.New("", "value provided for timestamp field is out of range")
)
type TimeUnit string
const (
TimeUnitSeconds = TimeUnit(featurebase.TimeUnitSeconds)
TimeUnitMilliseconds = TimeUnit(featurebase.TimeUnitMilliseconds)
TimeUnitMicroseconds = TimeUnit(featurebase.TimeUnitMicroseconds)
TimeUnitUSeconds = TimeUnit(featurebase.TimeUnitUSeconds)
TimeUnitNanoseconds = TimeUnit(featurebase.TimeUnitNanoseconds)
)
// TimestampToInt64 converts the provided timestamp to an int64 as the number of
// units past the epoch.
func TimestampToInt64(unit TimeUnit, epoch time.Time, ts time.Time) (int64, error) {
var err error
unit, err = validateTimeUnit(unit)
if err != nil {
return 0, errors.Wrap(err, "validating time unit")
}
epoch, err = validateEpoch(epoch)
if err != nil {
return 0, errors.Wrap(err, "validating epoch")
}
// Check if the epoch alone is out-of-range. If so, ingest should halt,
// regardless of state of the timestamp out-of-range CLI option.
if err := validateTimestamp(unit, epoch); err != nil {
return 0, errors.Wrap(err, "validating epoch")
}
epochAsInt64 := timestampToInt(unit, epoch)
// Check if the timestamp is out-of-range.
if err := validateTimestamp(unit, ts); err != nil {
return 0, errors.Wrapf(ErrTimestampOutOfRange, "validating timestamp: %s", ts)
}
tsAsInt64 := timestampToInt(unit, ts)
return tsAsInt64 - epochAsInt64, nil
}
// validateTimeUnit checks if the time unit is supported. If the provided unit
// is blank, validateTimeUnit returns the default TimeUnit.
func validateTimeUnit(unit TimeUnit) (TimeUnit, error) {
switch unit {
case "":
return TimeUnitSeconds, nil
case TimeUnitSeconds,
TimeUnitMilliseconds,
TimeUnitMicroseconds,
TimeUnitUSeconds,
TimeUnitNanoseconds:
return unit, nil
}
return "", errors.Errorf("unsupported time unit: %s", unit)
}
// validateEpoch checks if the epoch is supported. If the provided epoch
// is "zero", validateEpoch returns the default epoch value.
func validateEpoch(epoch time.Time) (time.Time, error) {
if epoch.IsZero() {
return time.Unix(0, 0), nil
}
return epoch, nil
}
// validateTimestamp checks if the timestamp is within the range of what FB accepts.
func validateTimestamp(unit TimeUnit, ts time.Time) error {
// Min and Max timestamps that Featurebase accepts
var minStamp, maxStamp time.Time
switch unit {
case TimeUnitNanoseconds:
minStamp = MinTimestampNano
maxStamp = MaxTimestampNano
default:
minStamp = MinTimestamp
maxStamp = MaxTimestamp
}
if ts.Before(minStamp) || ts.After(maxStamp) {
return errors.Errorf("timestamp value (%v) must be within min: %v and max: %v", ts, minStamp, maxStamp)
}
return nil
}
// timestampToInt takes a time unit and a time.Time and converts it to an
// integer value.
func timestampToInt(unit TimeUnit, ts time.Time) int64 {
switch unit {
case TimeUnitSeconds:
return ts.Unix()
case TimeUnitMilliseconds:
return ts.UnixMilli()
case TimeUnitMicroseconds, TimeUnitUSeconds:
return ts.UnixMicro()
case TimeUnitNanoseconds:
return ts.UnixNano()
}
return 0
}
// intToTimestamp takes a timeunit and an integer value and converts it to
// time.Time.
func intToTimestamp(unit TimeUnit, val int64) (time.Time, error) {
switch unit {
case TimeUnitSeconds:
return time.Unix(val, 0).UTC(), nil
case TimeUnitMilliseconds:
return time.UnixMilli(val).UTC(), nil
case TimeUnitMicroseconds, TimeUnitUSeconds:
return time.UnixMicro(val).UTC(), nil
case TimeUnitNanoseconds:
return time.Unix(0, val).UTC(), nil
default:
return time.Time{}, errors.Errorf("Unknown time unit: '%v'", unit)
}
}
// Int64ToTimestamp converts the provided int64 to a timestamp based on the time unit
// and epoch.
func Int64ToTimestamp(unit TimeUnit, epoch time.Time, val int64) (time.Time, error) {
return intToTimestamp(unit, timestampToInt(unit, epoch)+val)
}

View file

@ -1,29 +0,0 @@
version: '3'
services:
featurebase:
build:
context: ../.
dockerfile: ./Dockerfile-clustertests
environment:
PILOSA_DATA_DIR: /data
PILOSA_BIND: 0.0.0.0:10101
PILOSA_BIND_GRPC: 0.0.0.0:20101
PILOSA_ADVERTISE: featurebase:10101
command: /featurebase -test.run=TestRunMain -test.coverprofile=/testdata/batch_coverage.out server
volumes:
- ./testdata:/testdata
batch-test:
build:
context: ../.
dockerfile: ./batch/Dockerfile-test
volumes:
- ./testdata:/testdata
wait:
depends_on:
- "featurebase"
build:
context: .
dockerfile: Dockerfile-wait

View file

@ -1,111 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package egpool
import (
"errors"
"fmt"
"sync"
)
type Group struct {
PoolSize int
jobs chan func() error
sema chan struct{}
errMu sync.Mutex
firstErr error
errs []error
}
func (eg *Group) Go(f func() error) {
if eg.PoolSize <= 0 {
eg.PoolSize = 1
}
if eg.jobs == nil {
eg.jobs = make(chan func() error)
eg.sema = make(chan struct{}, eg.PoolSize)
}
// Start the job in an idle worker if possible.
select {
case eg.jobs <- f:
return
default:
}
// Start a new worker if necessary.
select {
case eg.jobs <- f:
// A worker finished its previous job and took this one over.
return
case eg.sema <- struct{}{}:
// Start a new worker.
go eg.processJobs()
eg.jobs <- f
}
}
func (eg *Group) err(err error) {
eg.errMu.Lock()
defer eg.errMu.Unlock()
if eg.firstErr == nil {
eg.firstErr = err
}
eg.errs = append(eg.errs, err)
}
type PanicError struct {
Value interface{}
}
func (p PanicError) Error() string {
return fmt.Sprintf("panic: %v", p.Value)
}
var ErrGoexit = errors.New("runtime.Goexit used in job function")
func (eg *Group) processJobs() {
// Notify pool of shutdown.
defer func() { <-eg.sema }()
// Handle panic and Goexit.
var finished bool
defer func() {
if !finished {
if p := recover(); p != nil {
eg.err(PanicError{p})
} else {
eg.err(ErrGoexit)
}
}
}()
// Run jobs from queue.
for jobFn := range eg.jobs {
err := jobFn()
if err != nil {
eg.err(err)
}
}
finished = true
}
func (eg *Group) Wait() error {
if eg.jobs == nil {
return nil
}
close(eg.jobs)
for i := 0; i < eg.PoolSize; i++ {
eg.sema <- struct{}{}
}
return eg.firstErr
}
func (eg *Group) Errors() []error {
return eg.errs
}

View file

@ -1,38 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package egpool_test
import (
"errors"
"testing"
"github.com/featurebasedb/featurebase/v3/batch/egpool"
)
func TestEGPool(t *testing.T) {
eg := egpool.Group{}
a := make([]int, 10)
for i := 0; i < 10; i++ {
i := i
eg.Go(func() error {
a[i] = i
if i == 7 {
return errors.New("blah")
}
return nil
})
}
err := eg.Wait()
if err == nil || err.Error() != "blah" {
t.Errorf("expected err blah, got: %v", err)
}
for i := 0; i < 10; i++ {
if a[i] != i {
t.Errorf("expected a[%d] to be %d, but is %d", i, i, a[i])
}
}
}

View file

@ -1,8 +0,0 @@
package batch
import "github.com/pkg/errors"
// Predefined batch-related errors.
var (
ErrPreconditionFailed = errors.New("Precondition failed")
)

View file

@ -1,3 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package batch

View file

@ -1,3 +0,0 @@
# testdata
This directory is used in CI tests. I think.

View file

@ -1,26 +0,0 @@
#!/bin/sh
name=$1
shift
_start_ts=$(date +%s)
elapsed=0
timeout=120
while :
do
$@ > /dev/null
_ret=$?
_end_ts=$(date +%s)
if [ $_ret -eq 0 ]; then
echo "$name is available after $((_end_ts - _start_ts)) seconds."
break
else
echo "Waiting for $name after $((_end_ts - _start_ts)) seconds."
fi
sleep 1s
elapsed=$((elapsed+1))
if [ $elapsed -ge $timeout ]; then
exit 110
fi
done
set -ex

30
bench/LICENSE Normal file
View file

@ -0,0 +1,30 @@
The following applies to the files errgroup.go and errgroup_test.go
in the same directory this file resides:
Copyright (c) 2009 The Go Authors. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following disclaimer
in the documentation and/or other materials provided with the
distribution.
* Neither the name of Google Inc. nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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package bench
import "context"
// Benchmark is an interface to guide the creation of new pilosa benchmarks or
// benchmark components. It defines 2 methods, Init, and Run. These are separate
// methods so that benchmark running code can time only the running of the
// benchmark, and not any setup.
type Benchmark interface {
// Init takes a list of hosts and an agent number. It is generally expected
// to set up a connection to pilosa using whatever client it chooses. The
// agentNum should be used to parameterize the benchmark's configuration if
// it is being run simultaneously on multiple "agents". E.G. the agentNum
// might be used to make a random seed different for each agent, or have
// each agent set a different set of bits. Init's doc string should document
// how the agentNum affects it. Every benchmark should have a 'Name' field
// set by init, which appears when the benchmark is marshalled to json as
// "name".
Init(hosts []string, agentNum int) error
// Run runs the benchmark. The return value of Run is kept generic so that
// any relevant statistics or metrics that may be specific to the benchmark
// in question can be reported. TODO guidelines for what gets included in
// results and what will get added by other stuff. Run does not need to
// report total run time in `results`, as that will be added by calling
// code.
Run(ctx context.Context) map[string]interface{}
}
// Command extends Benchmark by adding methods for configuring via command line flags and returning usage information.
type Command interface {
Benchmark
// ConsumeFlags sets and parses flags, and then returns flagSet.Args(). This
// is so that multiple benchmarks can be specified at the command line.
ConsumeFlags(args []string) ([]string, error)
// Usage returns information on how to use this benchmark. The usage string
// should explain how the agent num affects the benchmark's operation.
Usage() string
}

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package bench
import (
"context"
"errors"
"fmt"
"github.com/pilosa/pilosa"
)
func firstHostClient(hosts []string) (*pilosa.Client, error) {
client, err := pilosa.NewClient(hosts[0])
if err != nil {
return nil, err
}
return client, nil
}
func roundRobinClient(hosts []string, agentNum int) (*pilosa.Client, error) {
clientNum := agentNum % len(hosts)
return firstHostClient(hosts[clientNum:])
}
// HasClient provides a reusable component for Benchmark implementations which
// provides the Init method, a ClientType argument and a cli internal variable.
type HasClient struct {
client *pilosa.Client
ClientType string `json:"client-type"`
ContentType string `json:"content-type"`
}
// Init for HasClient looks at the ClientType field and creates a pilosa client
// either using the first host in the list of hosts or based on the agent
// number mod len(hosts)
func (h *HasClient) Init(hosts []string, agentNum int) error {
var err error
switch h.ClientType {
case "single":
h.client, err = firstHostClient(hosts)
case "round_robin":
h.client, err = roundRobinClient(hosts, agentNum)
default:
err = fmt.Errorf("Unsupported ClientType: %v", h.ClientType)
}
if err != nil {
return err
}
switch h.ContentType {
case "protobuf":
return nil
case "pql":
return nil
default:
return fmt.Errorf("Unsupported ContentType: %v", h.ContentType)
}
}
func (h *HasClient) ExecuteQuery(contentType, db, query string, ctx context.Context) (interface{}, error) {
if contentType == "protobuf" {
return h.client.ExecuteQuery(ctx, db, query, true)
} else if contentType == "pql" {
return h.client.ExecutePQL(ctx, db, query)
} else {
return nil, errors.New("unsupport content type")
}
}

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package bench
import (
"fmt"
"flag"
"io/ioutil"
"context"
"time"
)
// DiagonalSetBits sets bits with increasing profile id and bitmap id.
type DiagonalSetBits struct {
HasClient
Name string `json:"name"`
BaseBitmapID int `json:"base-bitmap-id"`
BaseProfileID int `json:"base-profile-id"`
Iterations int `json:"iterations"`
DB string `json:"db"`
}
// Init sets up the pilosa client and modifies the configured values based on
// the agent num.
func (b *DiagonalSetBits) Init(hosts []string, agentNum int) error {
b.Name = "diagonal-set-bits"
b.BaseBitmapID = b.BaseBitmapID + (agentNum * b.Iterations)
b.BaseProfileID = b.BaseProfileID + (agentNum * b.Iterations)
return b.HasClient.Init(hosts, agentNum)
}
// Usage returns the usage message to be printed.
func (b *DiagonalSetBits) Usage() string {
return `
diagonal-set-bits sets bits with increasing profile id and bitmap id.
Agent num offsets both the base profile id and base bitmap id by the number of
iterations, so that only bits on the main diagonal are set, and agents don't
overlap at all.
Usage: diagonal-set-bits [arguments]
The following arguments are available:
-base-bitmap-id int
bits being set will all be greater than BaseBitmapID
-base-profile-id int
profile id num to start from
-iterations int
number of bits to set
-db string
pilosa db to use
-client-type string
Can be 'single' (all agents hitting one host) or 'round_robin'
-content-type string
protobuf or pql
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *DiagonalSetBits) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("DiagonalSetBits", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.IntVar(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.IntVar(&b.BaseProfileID, "base-profile-id", 0, "")
fs.IntVar(&b.Iterations, "iterations", 100, "")
fs.StringVar(&b.DB, "db", "benchdb", "")
fs.StringVar(&b.ClientType, "client-type", "single", "")
fs.StringVar(&b.ContentType, "content-type", "protobuf", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
return fs.Args(), nil
}
// Run runs the DiagonalSetBits benchmark
func (b *DiagonalSetBits) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
if b.client == nil {
results["error"] = fmt.Errorf("No client set for DiagonalSetBits")
return results
}
s := NewStats()
var start time.Time
for n := 0; n < b.Iterations; n++ {
query := fmt.Sprintf("SetBit(%d, 'frame.n', %d)", b.BaseBitmapID+n, b.BaseProfileID+n)
start = time.Now()
_, err := b.client.ExecuteQuery(ctx, b.DB, query, true)
if err != nil {
results["error"] = err
return results
}
s.Add(time.Now().Sub(start))
}
AddToResults(s, results)
return results
}

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// bench contains benchmarks and common utilities useful to benchmarks
//
// In order to write new benchmarks, one must satisfy the Benchmark and Command
// interfaces in bench.go. In order to use the benchmark from pilosactl, it
// needs to be wired in in two places. The first is BagentCommand.ParseFlags,
// where a case statement needs to be added, and the second is just adding the
// benchmark to the BagentCommand.Usage usage string.
//
// When writing a new benchmark, there are a few things to keep in mind other
// than just implementing the interface:
//
// 1. The benchmark should modify its own configuration in its Init method based
// on the agentNum it is given. How it modifies is specific to the benchmark,
// but the idea is that it should make sense to call the benchmark with the same
// configuration, but multiple different agent numbers, and it should do useful
// work each time (i.e. not just setting the same bits, or running the same
// queries).
//
// 2. The Init method should do everything that needs to be done to get the
// benchmark to a runnable state - all code in run should be the stuff that we
// actually want to time.
//
// 3. The Run method does not need to report the total runtime - that is collected
// by calling code.
//
// 4. Usage should follow the format in other benchmarks, and explain how the
// benchmark uses agentNum to modify its behavior
//
//
// Files:
//
// 1. client.go contains pilosa client code which is shared by many benchmarks
//
// 2. errgroup.go contains the ErrGroup implementation copied from golang.org/x/
// so as not to pull in a bunch of useless deps.
//
// 3. stats.go contains useful code for gathering stats about a series of timed
// operations.
package bench

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// Copyright 2016 The Go Authors. All rights reserved.
// Use of this source code is governed by a BSD-style
// license that can be found in the LICENSE file.
// Package errgroup provides synchronization, error propagation, and Context
// cancelation for groups of goroutines working on subtasks of a common task.
package bench
import (
"sync"
"context"
)
// An ErrGroup is a collection of goroutines working on subtasks that are part of
// the same overall task.
//
// A zero ErrGroup is valid and does not cancel on error.
type ErrGroup struct {
cancel func()
wg sync.WaitGroup
errOnce sync.Once
err error
}
// WithContext returns a new ErrGroup and an associated Context derived from ctx.
//
// The derived Context is canceled the first time a function passed to Go
// returns a non-nil error or the first time Wait returns, whichever occurs
// first.
func WithContext(ctx context.Context) (*ErrGroup, context.Context) {
ctx, cancel := context.WithCancel(ctx)
return &ErrGroup{cancel: cancel}, ctx
}
// Wait blocks until all function calls from the Go method have returned, then
// returns the first non-nil error (if any) from them.
func (g *ErrGroup) Wait() error {
g.wg.Wait()
if g.cancel != nil {
g.cancel()
}
return g.err
}
// Go calls the given function in a new goroutine.
//
// The first call to return a non-nil error cancels the group; its error will be
// returned by Wait.
func (g *ErrGroup) Go(f func() error) {
g.wg.Add(1)
go func() {
defer g.wg.Done()
if err := f(); err != nil {
g.errOnce.Do(func() {
g.err = err
if g.cancel != nil {
g.cancel()
}
})
}
}()
}

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// Copyright 2016 The Go Authors. All rights reserved.
// Use of this source code is governed by a BSD-style
// license that can be found in the LICENSE file.
package bench_test
import (
"errors"
"fmt"
"net/http"
"os"
"testing"
"context"
"github.com/pilosa/pilosa/bench"
)
var (
Web = fakeSearch("web")
Image = fakeSearch("image")
Video = fakeSearch("video")
)
type Result string
type Search func(ctx context.Context, query string) (Result, error)
func fakeSearch(kind string) Search {
return func(_ context.Context, query string) (Result, error) {
return Result(fmt.Sprintf("%s result for %q", kind, query)), nil
}
}
// JustErrors illustrates the use of a ErrGroup in place of a sync.WaitGroup to
// simplify goroutine counting and error handling. This example is derived from
// the sync.WaitGroup example at https://golang.org/pkg/sync/#example_WaitGroup.
func ExampleGroup_justErrors() {
var g bench.ErrGroup
var urls = []string{
"http://www.golang.org/",
"http://www.google.com/",
"http://www.somestupidname.com/",
}
for _, url := range urls {
// Launch a goroutine to fetch the URL.
url := url // https://golang.org/doc/faq#closures_and_goroutines
g.Go(func() error {
// Fetch the URL.
resp, err := http.Get(url)
if err == nil {
resp.Body.Close()
}
return err
})
}
// Wait for all HTTP fetches to complete.
if err := g.Wait(); err == nil {
fmt.Println("Successfully fetched all URLs.")
}
}
// Parallel illustrates the use of a ErrGroup for synchronizing a simple parallel
// task: the "Google Search 2.0" function from
// https://talks.golang.org/2012/concurrency.slide#46, augmented with a Context
// and error-handling.
func ExampleGroup_parallel() {
Google := func(ctx context.Context, query string) ([]Result, error) {
g, ctx := bench.WithContext(ctx)
searches := []Search{Web, Image, Video}
results := make([]Result, len(searches))
for i, search := range searches {
i, search := i, search // https://golang.org/doc/faq#closures_and_goroutines
g.Go(func() error {
result, err := search(ctx, query)
if err == nil {
results[i] = result
}
return err
})
}
if err := g.Wait(); err != nil {
return nil, err
}
return results, nil
}
results, err := Google(context.Background(), "golang")
if err != nil {
fmt.Fprintln(os.Stderr, err)
return
}
for _, result := range results {
fmt.Println(result)
}
// Output:
// web result for "golang"
// image result for "golang"
// video result for "golang"
}
func TestZeroGroup(t *testing.T) {
err1 := errors.New("errgroup_test: 1")
err2 := errors.New("errgroup_test: 2")
cases := []struct {
errs []error
}{
{errs: []error{}},
{errs: []error{nil}},
{errs: []error{err1}},
{errs: []error{err1, nil}},
{errs: []error{err1, nil, err2}},
}
for _, tc := range cases {
var g bench.ErrGroup
var firstErr error
for i, err := range tc.errs {
err := err
g.Go(func() error { return err })
if firstErr == nil && err != nil {
firstErr = err
}
if gErr := g.Wait(); gErr != firstErr {
t.Errorf("after %T.Go(func() error { return err }) for err in %v\n"+
"g.Wait() = %v; want %v",
g, tc.errs[:i+1], err, firstErr)
}
}
}
}
func TestWithContext(t *testing.T) {
errDoom := errors.New("group_test: doomed")
cases := []struct {
errs []error
want error
}{
{want: nil},
{errs: []error{nil}, want: nil},
{errs: []error{errDoom}, want: errDoom},
{errs: []error{errDoom, nil}, want: errDoom},
}
for _, tc := range cases {
g, ctx := bench.WithContext(context.Background())
for _, err := range tc.errs {
err := err
g.Go(func() error { return err })
}
if err := g.Wait(); err != tc.want {
t.Errorf("after %T.Go(func() error { return err }) for err in %v\n"+
"g.Wait() = %v; want %v",
g, tc.errs, err, tc.want)
}
canceled := false
select {
case <-ctx.Done():
canceled = true
default:
}
if !canceled {
t.Errorf("after %T.Go(func() error { return err }) for err in %v\n"+
"ctx.Done() was not closed",
g, tc.errs)
}
}
}

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package bench
import (
"context"
"flag"
"fmt"
"io"
"io/ioutil"
"math/rand"
"sort"
"github.com/pilosa/pilosa/pilosactl"
)
// NewImport returns an Import Benchmark which pilosactl importer configured.
func NewImport(stdin io.Reader, stdout, stderr io.Writer) *Import {
return &Import{
ImportCommand: pilosactl.NewImportCommand(stdin, stdout, stderr),
}
}
// Import sets bits with increasing profile id and bitmap id.
type Import struct {
Name string `json:"name"`
BaseBitmapID int64 `json:"base-bitmap-id"`
MaxBitmapID int64 `json:"max-bitmap-id"`
BaseProfileID int64 `json:"base-profile-id"`
MaxProfileID int64 `json:"max-profile-id"`
RandomBitmapOrder bool `json:"random-bitmap-order"`
MinBitsPerMap int64 `json:"min-bits-per-map"`
MaxBitsPerMap int64 `json:"max-bits-per-map"`
AgentControls string `json:"agent-controls"`
Seed int64 `json:"seed"`
numbits int
*pilosactl.ImportCommand
}
// Usage returns the usage message to be printed.
func (b *Import) Usage() string {
return `
import generates an import file and imports using pilosa's bulk import interface
Agent num can have various effects - see -agent-controls flag.
Usage: import [arguments]
The following arguments are available:
-base-bitmap-id int
bits being set will all be greater than this
-max-bitmap-id int
bits being set will all be less than this
-base-profile-id int
profile id num to start from
-max-profile-id int
maximum profile id to generate
-random-bitmap-order
if this option is set, the import file will not be sorted by bitmap id
-min-bits-per-map int
minimum number of bits set per bitmap
-max-bits-per-map int
maximum number of bits set per bitmap
-agent-controls string
can be 'height', 'width', or empty (TODO or square?)- increasing
number of agents modulates bitmap id range, profile id range,
or just sets more bits in the same range.
-seed int
seed for RNG
-db string
pilosa db to use
-frame string
frame to import into
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *Import) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("Import", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.Int64Var(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.Int64Var(&b.MaxBitmapID, "max-bitmap-id", 1000, "")
fs.Int64Var(&b.BaseProfileID, "base-profile-id", 0, "")
fs.Int64Var(&b.MaxProfileID, "max-profile-id", 1000, "")
fs.BoolVar(&b.RandomBitmapOrder, "random-bitmap-order", false, "")
fs.Int64Var(&b.MinBitsPerMap, "min-bits-per-map", 0, "")
fs.Int64Var(&b.MaxBitsPerMap, "max-bits-per-map", 10, "")
fs.StringVar(&b.AgentControls, "agent-controls", "", "")
fs.Int64Var(&b.Seed, "seed", 0, "")
fs.StringVar(&b.Database, "db", "benchdb", "")
fs.StringVar(&b.Frame, "frame", "testframe", "")
fs.IntVar(&b.BufferSize, "buffer-size", 10000000, "")
if err := fs.Parse(args); err != nil {
return nil, err
}
return fs.Args(), nil
}
// Init generates import data based on the agent num and fields of 'b'.
func (b *Import) Init(hosts []string, agentNum int) error {
if len(hosts) == 0 {
return fmt.Errorf("Need at least one host")
}
b.Name = "import"
b.Host = hosts[0]
// generate csv data
b.Seed = b.Seed + int64(agentNum)
switch b.AgentControls {
case "height":
numBitmapIDs := (b.MaxBitmapID - b.BaseBitmapID)
b.BaseBitmapID = b.BaseBitmapID + (numBitmapIDs * int64(agentNum))
b.MaxBitmapID = b.BaseBitmapID + numBitmapIDs
case "width":
numProfileIDs := (b.MaxProfileID - b.BaseProfileID)
b.BaseProfileID = b.BaseProfileID + (numProfileIDs * int64(agentNum))
b.MaxProfileID = b.BaseProfileID + numProfileIDs
case "":
break
default:
return fmt.Errorf("agent-controls: '%v' is not supported", b.AgentControls)
}
f, err := ioutil.TempFile("", "")
if err != nil {
return err
}
// set b.Paths)
num := GenerateImportCSV(f, b.BaseBitmapID, b.MaxBitmapID, b.BaseProfileID, b.MaxProfileID,
b.MinBitsPerMap, b.MaxBitsPerMap, b.Seed, b.RandomBitmapOrder)
b.numbits = num
// set b.Paths
b.Paths = []string{f.Name()}
return f.Close()
}
// Run runs the Import benchmark
func (b *Import) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
results["numbits"] = b.numbits
results["db"] = b.Database
err := b.ImportCommand.Run(ctx)
if err != nil {
results["error"] = err.Error()
}
return results
}
// Int64Slice is a sortable slice of 64 bit signed ints
type Int64Slice []int64
func (s Int64Slice) Len() int { return len(s) }
func (s Int64Slice) Less(i, j int) bool { return s[i] < s[j] }
func (s Int64Slice) Swap(i, j int) { s[i], s[j] = s[j], s[i] }
// GenerateImportCSV writes a generated csv to 'w' which is in the form pilosactl expects for imports.
func GenerateImportCSV(w io.Writer, baseBitmapID, maxBitmapID, baseProfileID, maxProfileID, minBitsPerMap, maxBitsPerMap, seed int64, randomOrder bool) int {
src := rand.NewSource(seed)
rng := rand.New(src)
var bitmapIDs []int
if randomOrder {
bitmapIDs = rng.Perm(int(maxBitmapID - baseBitmapID))
}
numrows := 0
profileIDs := make(Int64Slice, maxBitsPerMap)
for i := baseBitmapID; i < maxBitmapID; i++ {
var bitmapID int64
if randomOrder {
bitmapID = int64(bitmapIDs[i-baseBitmapID])
} else {
bitmapID = int64(i)
}
numBitsToSet := rng.Int63n(maxBitsPerMap-minBitsPerMap) + minBitsPerMap
numrows += int(numBitsToSet)
for j := int64(0); j < numBitsToSet; j++ {
profileIDs[j] = rng.Int63n(maxProfileID-baseProfileID) + baseProfileID
}
profIDs := profileIDs[:numBitsToSet]
if !randomOrder {
sort.Sort(profIDs)
}
for j := int64(0); j < numBitsToSet; j++ {
fmt.Fprintf(w, "%d,%d\n", bitmapID, profIDs[j])
}
}
return numrows
}

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package bench_test
import (
"bytes"
"testing"
"io/ioutil"
"os"
"github.com/pilosa/pilosa/bench"
)
func TestImportInit(t *testing.T) {
imp := bench.NewImport(os.Stdin, os.Stdout, os.Stderr)
imp.BaseBitmapID = 0
imp.MaxBitmapID = 10
imp.BaseProfileID = 0
imp.MaxProfileID = 10
imp.RandomBitmapOrder = false
imp.MinBitsPerMap = 2
imp.MaxBitsPerMap = 3
imp.AgentControls = "width"
imp.Seed = 0
imp.Init([]string{"blah"}, 2)
f, err := os.Open(imp.Paths[0])
if err != nil {
t.Fatalf("Couldn't open file: %v, err: %v", imp.Paths[0], err)
}
bytes, err := ioutil.ReadAll(f)
if err != nil {
t.Fatalf("error reading file: %v", err)
}
expected := `
0,21
0,22
1,20
1,22
2,22
2,26
3,21
3,23
4,21
4,22
5,20
5,28
6,23
6,27
7,20
7,20
8,23
8,29
9,23
9,29
`[1:]
if string(bytes) != expected {
t.Fatalf("unexpected result: %v", string(bytes))
}
}
func TestGenerateImportCSVNonRand(t *testing.T) {
b := bytes.NewBuffer(make([]byte, 0))
bench.GenerateImportCSV(b, 0, 10, 20, 30, 2, 3, 2, false)
bytes, err := ioutil.ReadAll(b)
if err != nil {
t.Fatalf("Error reading buffer: %v", err)
}
expected := `
0,21
0,22
1,20
1,22
2,22
2,26
3,21
3,23
4,21
4,22
5,20
5,28
6,23
6,27
7,20
7,20
8,23
8,29
9,23
9,29
`[1:]
if string(bytes) != expected {
t.Fatalf("unexpected value for generated csv: \n%v", string(bytes))
}
}
func TestGenerateImportCSVRand(t *testing.T) {
b := bytes.NewBuffer(make([]byte, 0))
bench.GenerateImportCSV(b, 0, 10, 21, 29, 1, 4, 0, true)
bytes, err := ioutil.ReadAll(b)
if err != nil {
t.Fatalf("Error reading buffer: %v", err)
}
expected := `
8,25
2,23
3,22
3,28
3,28
0,25
0,23
5,26
5,23
7,21
7,23
1,25
6,23
6,27
6,25
9,26
4,22
4,24
`[1:]
if string(bytes) != expected {
t.Fatalf("unexpected value for generated csv: \n%v", string(bytes))
}
}

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package bench
import (
"context"
"flag"
"fmt"
"io/ioutil"
"strconv"
"time"
)
// MultiDBSetBits sets bits with increasing profile id and bitmap id.
type MultiDBSetBits struct {
HasClient
Name string `json:"name"`
BaseBitmapID int `json:"base-bitmap-id"`
BaseProfileID int `json:"base-profile-id"`
Iterations int `json:"iterations"`
Database string `json:"database"`
}
// Init sets up the db name based on the agentNum and sets up the pilosa client.
func (b *MultiDBSetBits) Init(hosts []string, agentNum int) error {
b.Name = "multi-db-set-bits"
b.Database = b.Database + strconv.Itoa(agentNum)
return b.HasClient.Init(hosts, agentNum)
}
// Usage returns the usage message to be printed.
func (b *MultiDBSetBits) Usage() string {
return `
multi-db-set-bits sets bits with increasing profile id and bitmap id using a different DB for each agent.
Agent num changes the database being written to.
Usage: multi-db-set-bits [arguments]
The following arguments are available:
-base-bitmap-id int
bits being set will all be greater than base-bitmap-id
-base-profile-id int
profile id num to start from
-iterations int
number of bits to set
-client-type string
Can be 'single' (all agents hitting one host) or 'round_robin'
-content-type string
protobuf or pql
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *MultiDBSetBits) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("MultiDBSetBits", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.IntVar(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.IntVar(&b.BaseProfileID, "base-profile-id", 0, "")
fs.IntVar(&b.Iterations, "iterations", 100, "")
fs.StringVar(&b.ClientType, "client-type", "single", "")
fs.StringVar(&b.ContentType, "content-type", "protobuf", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
return fs.Args(), nil
}
// Run runs the MultiDBSetBits benchmark
func (b *MultiDBSetBits) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
if b.client == nil {
results["error"] = fmt.Errorf("No client set for MultiDBSetBits")
return results
}
s := NewStats()
var start time.Time
for n := 0; n < b.Iterations; n++ {
query := fmt.Sprintf("SetBit(%d, 'frame.n', %d)", b.BaseBitmapID+n, b.BaseProfileID+n)
start = time.Now()
_, err := b.client.ExecuteQuery(ctx, b.Database, query, true)
if err != nil {
results["error"] = err
return results
}
s.Add(time.Now().Sub(start))
}
AddToResults(s, results)
return results
}

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package bench
// PermutationGenerator provides a way to pass integer IDs through a permutation
// map that is pseudorandom but repeatable. This could be done with rand.Perm,
// but that would require storing a [Iterations]int64 array, which we want to avoid
// for large values of Iterations.
// It works by using a Linear Congruence Generator (https://en.wikipedia.org/wiki/Linear_congruential_generator)
// with modulus m = Iterations,
// c = an arbitrary prime,
// a = computed to ensure the full period.
// relevant stackoverflow: http://cs.stackexchange.com/questions/29822/lazily-computing-a-random-permutation-of-the-positive-integers
type PermutationGenerator struct {
a int64
c int64
m int64
}
func NewPermutationGenerator(m int64, seed int64) *PermutationGenerator {
// figure out 'a' and 'c', return PermutationGenerator
a := LCGmultiplierFromModulus(m, seed)
c := int64(22695479)
return &PermutationGenerator{a, c, m}
}
func (p *PermutationGenerator) Next(n int64) int64 {
// run one step of the LCG
return (n*p.a + p.c) % p.m
}
// LCG parameters must satisfy three conditions:
// 1. m and c are relatively prime (satisfied for prime c != m)
// 2. a-1 is divisible by all prime factors of m
// 3. a-1 is divisible by 4 if m is divisible by 4
// Additionally, a seed can be used to select between different permutations
func LCGmultiplierFromModulus(m int64, seed int64) int64 {
factors := primeFactors(m)
product := int64(1)
for p := range factors {
// satisfy condition 2
product *= p
}
if m%4 == 0 {
// satisfy condition 3
product *= 2
}
return product*seed + 1
}
// Returns map of {integerFactor: count, ...}
// This is a naive algorithm that will not work well for large prime n.
func primeFactors(n int64) map[int64]int {
factors := make(map[int64]int)
for i := int64(2); i <= n; i++ {
div, mod := n/i, n%i
for mod == 0 {
factors[i] += 1
n = div
div, mod = n/i, n%i
}
}
return factors
}

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package bench
import "time"
// wrapper type to force human-readable JSON output
type PrettyDuration time.Duration
// MarshalJSON returns a nicely formatted duration, instead of it just being
// treated like an int.
func (d PrettyDuration) MarshalJSON() ([]byte, error) {
s := time.Duration(d).String()
return []byte("\"" + s + "\""), nil
}
// Recursively replaces elements of ugly types with their pretty wrappers
func Prettify(m map[string]interface{}) map[string]interface{} {
newmap := make(map[string]interface{})
for k, v := range m {
switch v.(type) {
case map[string]interface{}:
newmap[k] = Prettify(v.(map[string]interface{}))
case []time.Duration:
newslice := make([]PrettyDuration, len(v.([]time.Duration)))
slice := v.([]time.Duration)
for n, e := range slice {
newslice[n] = PrettyDuration(e)
}
newmap[k] = newslice
case time.Duration:
newmap[k] = PrettyDuration(v.(time.Duration))
default:
if interv, ok := v.([]map[string]interface{}); ok {
for i, iv := range interv {
interv[i] = Prettify(iv)
}
}
newmap[k] = v
}
}
return newmap
}

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package bench_test
import (
"bytes"
"encoding/json"
"fmt"
"os"
"testing"
"time"
"github.com/pilosa/pilosa/bench"
)
func prettyEncode(data map[string]interface{}) string {
pretty := bench.Prettify(data)
jsonString := new(bytes.Buffer)
enc := json.NewEncoder(jsonString)
enc.SetIndent("", " ")
err := enc.Encode(pretty)
if err != nil {
fmt.Fprintln(os.Stderr, err)
}
return jsonString.String()
}
func TestPrettifyString(t *testing.T) {
res := make(map[string]interface{}, 1)
res["0"] = "foobar"
pretty := prettyEncode(res)
expected := `
{
"0": "foobar"
}
`[1:]
if pretty != expected {
t.Fatalf("Pretty string doesn't match")
}
}
func TestPrettifyInt(t *testing.T) {
res := make(map[string]interface{}, 1)
res["0"] = 234567
pretty := prettyEncode(res)
expected := `
{
"0": 234567
}
`[1:]
if pretty != expected {
t.Fatalf("Pretty int doesn't match")
}
}
func TestPrettifyDuration(t *testing.T) {
res := make(map[string]interface{}, 1)
res["0"] = time.Duration(234567)
pretty := prettyEncode(res)
expected := `
{
"0": "234.567µs"
}
`[1:]
if pretty != expected {
t.Fatalf("Pretty duration doesn't match")
}
}
func TestPrettifyDurationSlice(t *testing.T) {
res := make(map[string]interface{}, 1)
res["0"] = []time.Duration{123, 234567, 34567890}
pretty := prettyEncode(res)
expected := `
{
"0": [
"123ns",
"234.567µs",
"34.56789ms"
]
}
`[1:]
if pretty != expected {
t.Fatalf("Pretty duration slice doesn't match")
}
}

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package bench
import (
"math/rand"
"github.com/pilosa/pilosa/pql"
)
// NewQueryGenerator initializes a new QueryGenerator
func NewQueryGenerator(seed int64) *QueryGenerator {
return &QueryGenerator{
IDToFrameFn: func(id uint64) string { return "frame.n" },
R: rand.New(rand.NewSource(seed)),
Frames: []string{"frame.n"},
}
}
// QueryGenerator holds the configuration and state for randomly generating
// queries.
type QueryGenerator struct {
IDToFrameFn func(id uint64) string
R *rand.Rand
Frames []string
}
// Random returns a randomly generated query.
func (q *QueryGenerator) Random(maxN, depth, maxargs int, idmin, idmax uint64) pql.Call {
// TODO: handle depth==1 or 0
val := q.R.Intn(5)
switch val {
case 0:
return q.RandomTopN(maxN, depth, maxargs, idmin, idmax)
default:
return q.RandomBitmapCall(depth, maxargs, idmin, idmax)
}
}
// RandomTopN returns a randomly generated TopN query.
func (q *QueryGenerator) RandomTopN(maxN, depth, maxargs int, idmin, idmax uint64) *pql.TopN {
frameIdx := q.R.Intn(len(q.Frames))
return &pql.TopN{
Frame: q.Frames[frameIdx],
N: q.R.Intn(maxN-1) + 1,
Src: q.RandomBitmapCall(depth, maxargs, idmin, idmax),
}
}
// RandomBitmapCall returns a randomly generate query which is a pql.BitmapCall.
func (q *QueryGenerator) RandomBitmapCall(depth, maxargs int, idmin, idmax uint64) pql.BitmapCall {
if depth <= 1 {
bitmapID := q.R.Int63n(int64(idmax)-int64(idmin)) + int64(idmin)
return Bitmap(uint64(bitmapID), q.IDToFrameFn(uint64(bitmapID)))
}
call := q.R.Intn(4)
if call == 0 {
return q.RandomBitmapCall(1, 0, idmin, idmax)
}
var numargs int
if maxargs <= 2 {
numargs = 2
} else {
numargs = q.R.Intn(maxargs-2) + 2
}
calls := make([]pql.BitmapCall, numargs)
for i := 0; i < numargs; i++ {
calls[i] = q.RandomBitmapCall(depth-1, maxargs, idmin, idmax)
}
switch call {
case 1:
return Difference(calls...)
case 2:
return Intersect(calls...)
case 3:
return Union(calls...)
}
return nil
}
///////////////////////////////////////////////////
// Helpers TODO: move elsewhere
///////////////////////////////////////////////////
func ClearBit(id uint64, frame string, profileID uint64) *pql.ClearBit {
return &pql.ClearBit{
ID: id,
Frame: frame,
ProfileID: profileID,
}
}
func Count(bm pql.BitmapCall) *pql.Count {
return &pql.Count{
Input: bm,
}
}
func Profile(id uint64) *pql.Profile {
return &pql.Profile{
ID: id,
}
}
func SetBit(id uint64, frame string, profileID uint64) *pql.SetBit {
return &pql.SetBit{
ID: id,
Frame: frame,
ProfileID: profileID,
}
}
func SetBitmapAttrs(id uint64, frame string, attrs map[string]interface{}) *pql.SetBitmapAttrs {
return &pql.SetBitmapAttrs{
ID: id,
Frame: frame,
Attrs: attrs,
}
}
func SetProfileAttrs(id uint64, attrs map[string]interface{}) *pql.SetProfileAttrs {
return &pql.SetProfileAttrs{
ID: id,
Attrs: attrs,
}
}
func TopN(frame string, n int, src pql.BitmapCall, bmids []uint64, field string, filters []interface{}) *pql.TopN {
return &pql.TopN{
Frame: frame,
N: n,
Src: src,
BitmapIDs: bmids,
Field: field,
Filters: filters,
}
}
func Difference(bms ...pql.BitmapCall) *pql.Difference {
// TODO does this need to be limited to two inputs?
return &pql.Difference{
Inputs: bms,
}
}
func Intersect(bms ...pql.BitmapCall) *pql.Intersect {
return &pql.Intersect{
Inputs: bms,
}
}
func Union(bms ...pql.BitmapCall) *pql.Union {
return &pql.Union{
Inputs: bms,
}
}
func Bitmap(id uint64, frame string) *pql.Bitmap {
return &pql.Bitmap{
ID: id,
Frame: frame,
}
}

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package bench_test
import (
"github.com/pilosa/pilosa/bench"
"testing"
)
func TestRandomBitmapCall(t *testing.T) {
qm := bench.NewQueryGenerator(5)
bmc := qm.RandomBitmapCall(4, 3, 0, 1000)
t.Log(bmc.String())
}
func TestRandom(t *testing.T) {
for i := 99; i < 120; i++ {
qm := bench.NewQueryGenerator(int64(i))
call := qm.Random(10, 4, 3, 0, 1000)
t.Log(call)
}
}

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package bench
import (
"fmt"
"flag"
"io/ioutil"
"context"
"math/rand"
"time"
)
// RandomSetBits sets bits randomly and deterministically based on a seed.
type RandomSetBits struct {
HasClient
Name string `json:"name"`
BaseBitmapID int64 `json:"base-bitmap-id"`
BaseProfileID int64 `json:"base-profile-id"`
BitmapIDRange int64 `json:"bitmap-id-range"`
ProfileIDRange int64 `json:"profile-id-range"`
Iterations int `json:"iterations"`
Seed int64 `json:"seed"`
DB string `json:"db"`
}
// Init adds the agent num to the random seed and initializes the client.
func (b *RandomSetBits) Init(hosts []string, agentNum int) error {
b.Name = "random-set-bits"
b.Seed = b.Seed + int64(agentNum)
return b.HasClient.Init(hosts, agentNum)
}
// Usage returns the usage message to be printed.
func (b *RandomSetBits) Usage() string {
return `
random-set-bits sets random bits
Agent number modifies the random seed.
Usage: random-set-bits [arguments]
The following arguments are available:
-base-bitmap-id int
bits being set will all be greater than BaseBitmapID
-bitmap-id-range int
number of possible bitmap ids that can be set
-base-profile-id int
profile id num to start from
-profile-id-range int
number of possible profile ids that can be set
-iterations int
number of bits to set
-seed int
Seed for RNG
-db string
pilosa db to use
-client-type string
Can be 'single' (all agents hitting one host) or 'round_robin'
-content-type string
protobuf or pql
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *RandomSetBits) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("RandomSetBits", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.Int64Var(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.Int64Var(&b.BitmapIDRange, "bitmap-id-range", 100000, "")
fs.Int64Var(&b.BaseProfileID, "base-profile-id", 0, "")
fs.Int64Var(&b.ProfileIDRange, "profile-id-range", 100000, "")
fs.Int64Var(&b.Seed, "seed", 1, "")
fs.IntVar(&b.Iterations, "iterations", 100, "")
fs.StringVar(&b.DB, "db", "benchdb", "")
fs.StringVar(&b.ClientType, "client-type", "single", "")
fs.StringVar(&b.ContentType, "content-type", "protobuf", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
return fs.Args(), nil
}
// Run runs the RandomSetBits benchmark
func (b *RandomSetBits) Run(ctx context.Context) map[string]interface{} {
src := rand.NewSource(b.Seed)
rng := rand.New(src)
results := make(map[string]interface{})
if b.client == nil {
results["error"] = fmt.Errorf("No client set for RandomSetBits")
return results
}
s := NewStats()
var start time.Time
for n := 0; n < b.Iterations; n++ {
bitmapID := rng.Int63n(b.BitmapIDRange)
profID := rng.Int63n(b.ProfileIDRange)
query := fmt.Sprintf("SetBit(%d, 'frame.n', %d)", b.BaseBitmapID+bitmapID, b.BaseProfileID+profID)
start = time.Now()
b.client.ExecuteQuery(ctx, b.DB, query, true)
s.Add(time.Now().Sub(start))
}
AddToResults(s, results)
return results
}

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package bench
import (
"context"
"flag"
"fmt"
"io/ioutil"
"strings"
"time"
)
// RandomQuery queries randomly and deterministically based on a seed.
type RandomQuery struct {
HasClient
Name string `json:"name"`
MaxDepth int `json:"max-depth"`
MaxArgs int `json:"max-args"`
MaxN int `json:"max-n"`
BaseBitmapID int64 `json:"base-bitmap-id"`
BitmapIDRange int64 `json:"bitmap-id-range"`
Iterations int `json:"iterations"`
Seed int64 `json:"seed"`
DBs []string `json:"dbs"`
}
// Init adds the agent num to the random seed and initializes the client.
func (b *RandomQuery) Init(hosts []string, agentNum int) error {
b.Name = "random-query"
b.Seed = b.Seed + int64(agentNum)
return b.HasClient.Init(hosts, agentNum)
}
// Usage returns the usage message to be printed.
func (b *RandomQuery) Usage() string {
return `
random-query constructs random queries
Agent number modifies the random seed.
Usage: random-query [arguments]
The following arguments are available:
-max-depth int
Maximum nesting depth of queries
-max-args int
Maximum number of args for Union/Intersect/Difference Queries
-max-n int
Maximum N value for TopN queries.
-base-bitmap-id int
bitmap id to start from
-bitmap-id-range int
number of possible bitmap ids that can be set
-iterations int
number of bits to set
-seed int
Seed for RNG
-dbs string
Comma separated list of DBs to query against
-client-type string
Can be 'single' (all agents hitting one host) or 'round_robin'
-content-type string
protobuf or pql
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *RandomQuery) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("RandomQuery", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.IntVar(&b.MaxDepth, "max-depth", 4, "")
fs.IntVar(&b.MaxArgs, "max-args", 4, "")
fs.IntVar(&b.MaxN, "max-n", 4, "")
fs.Int64Var(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.Int64Var(&b.BitmapIDRange, "bitmap-id-range", 100000, "")
fs.Int64Var(&b.Seed, "seed", 1, "")
fs.IntVar(&b.Iterations, "iterations", 100, "")
var dbs string
fs.StringVar(&dbs, "dbs", "benchdb", "")
fs.StringVar(&b.ClientType, "client-type", "single", "")
fs.StringVar(&b.ContentType, "content-type", "protobuf", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
b.DBs = strings.Split(dbs, ",")
return fs.Args(), nil
}
// Run runs the RandomQuery benchmark
func (b *RandomQuery) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
if b.client == nil {
results["error"] = fmt.Errorf("No client set for RandomQuery")
return results
}
qm := NewQueryGenerator(b.Seed)
s := NewStats()
var start time.Time
for n := 0; n < b.Iterations; n++ {
call := qm.Random(b.MaxN, b.MaxDepth, b.MaxArgs, uint64(b.BaseBitmapID), uint64(b.BitmapIDRange))
start = time.Now()
b.ExecuteQuery(b.ContentType, b.DBs[n%len(b.DBs)], call.String(), ctx)
s.Add(time.Now().Sub(start))
}
AddToResults(s, results)
return results
}

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package bench
import (
"context"
"flag"
"io"
"io/ioutil"
"strconv"
"time"
"github.com/pilosa/pilosa"
"github.com/pilosa/pilosa/pql"
)
// NewSliceHeight creates a new slice height benchmark with stdin/out/err
// initialized.
func NewSliceHeight(stdin io.Reader, stdout, stderr io.Writer) *SliceHeight {
return &SliceHeight{
Stdin: stdin,
Stdout: stdout,
Stderr: stderr,
}
}
// SliceHeight benchmark tests the effect of an increasing number of bitmaps in
// a single slice on query time.
type SliceHeight struct {
MaxTime time.Duration `json:"max-time"`
hosts []string
Name string `json:"name"`
MinBitsPerMap int64 `json:"min-bits-per-map"`
MaxBitsPerMap int64 `json:"max-bits-per-map"`
Seed int64 `json:"seed"`
Database string `json:"database"`
Frame string `json:"frame"`
Stdin io.Reader `json:"-"`
Stdout io.Writer `json:"-"`
Stderr io.Writer `json:"-"`
}
// Usage returns the usage message to be printed.
func (b *SliceHeight) Usage() string {
return `
slice-height repeatedly imports more bitmaps into a single slice and tests query times in between.
Agent number has no effect on this benchmark.
Usage: slice-height [arguments]
The following arguments are available:
-max-time int
stop benchmark after this many seconds
-min-bits-per-map int
minimum number of bits set per bitmap
-max-bits-per-map int
maximum number of bits set per bitmap
-seed int
seed for RNG
-db string
pilosa db to use
-frame string
frame to import into
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *SliceHeight) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("SliceHeight", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
maxTime := fs.Int("max-time", 30, "")
fs.Int64Var(&b.MinBitsPerMap, "min-bits-per-map", 0, "")
fs.Int64Var(&b.MaxBitsPerMap, "max-bits-per-map", 10, "")
fs.Int64Var(&b.Seed, "seed", 0, "")
fs.StringVar(&b.Database, "db", "benchdb", "")
fs.StringVar(&b.Frame, "frame", "testframe", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
b.MaxTime = time.Duration(*maxTime) * time.Second
return fs.Args(), nil
}
// Init sets up the slice height benchmark.
func (b *SliceHeight) Init(hosts []string, agentNum int) error {
b.Name = "slice-height"
b.hosts = hosts
return nil
}
// Run runs the SliceHeight benchmark
func (b *SliceHeight) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
imp := NewImport(b.Stdin, b.Stdout, b.Stderr)
imp.MaxBitmapID = 100
imp.MaxProfileID = pilosa.SliceWidth
imp.MinBitsPerMap = b.MinBitsPerMap
imp.MaxBitsPerMap = b.MaxBitsPerMap
imp.Database = b.Database
imp.Frame = b.Frame
start := time.Now()
for i := 0; i > -1; i++ {
iresults := make(map[string]interface{})
results["iteration"+strconv.Itoa(i)] = iresults
genstart := time.Now()
imp.Init(b.hosts, 0)
gendur := time.Now().Sub(genstart)
iresults["csvgen"] = gendur
iresults["import"] = imp.Run(ctx)
qstart := time.Now()
q := &pql.TopN{Frame: b.Frame, N: 50}
_, err := imp.Client.ExecuteQuery(ctx, b.Database, q.String(), true)
if err != nil {
iresults["query_error"] = err.Error()
} else {
qdur := time.Now().Sub(qstart)
iresults["query"] = qdur
}
imp.BaseBitmapID = imp.MaxBitmapID
imp.MaxBitmapID = imp.MaxBitmapID * 10
if time.Now().Sub(start) > b.MaxTime {
break
}
}
return results
}

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package bench
import (
"math"
"time"
)
// Stats object helps track timing stats.
type Stats struct {
Min time.Duration
Max time.Duration
Mean time.Duration
sumSquareDelta float64
Total time.Duration
Num int64
All []time.Duration
SaveAll bool
}
// NewStats gets a Stats object.
func NewStats() *Stats {
return &Stats{
Min: 1<<63 - 1,
All: make([]time.Duration, 0),
}
}
// Add adds a new time to the stats object.
func (s *Stats) Add(td time.Duration) {
if s.SaveAll {
s.All = append(s.All, td)
}
s.Num += 1
s.Total += td
if td < s.Min {
s.Min = td
}
if td > s.Max {
s.Max = td
}
// online variance calculation
// https://en.wikipedia.org/wiki/Algorithms_for_calculating_variance#Online_algorithm
delta := td - s.Mean
s.Mean += delta / time.Duration(s.Num)
s.sumSquareDelta += float64(delta * (td - s.Mean))
}
// Avg returns the average of all durations Added to the Stats object.
func (s *Stats) Avg() time.Duration {
return s.Total / time.Duration(s.Num)
}
// AddToResults serializes the summary of Stats and adds them to the results
// map.
func AddToResults(s *Stats, results map[string]interface{}) {
results["min"] = s.Min
results["max"] = s.Max
results["avg"] = s.Mean
variance := s.sumSquareDelta / float64(s.Num)
results["std"] = time.Duration(math.Sqrt(variance))
if s.SaveAll {
results["all"] = s.All
}
}

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bench/store.go Normal file
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package bench
import (
"fmt"
"strings"
"github.com/aws/aws-sdk-go/aws"
"github.com/aws/aws-sdk-go/aws/session"
"github.com/aws/aws-sdk-go/service/s3"
)
// NewS3Uploader creates an S3Uploader with specified bucket and key
func NewS3Uploader(bucket string, key string) *S3Uploader {
return &S3Uploader{
bucket,
s3.New(session.New(&aws.Config{})),
key,
}
}
// S3Uploader is an io.Writer for sending output to AWS S3 storage.
type S3Uploader struct {
bucket string
service *s3.S3
key string
}
// Write writes data to the uploader's bucket/key
func (u *S3Uploader) Write(data []byte) (int, error) {
// first return value of PutObject contains an ETag (hash) of the uploaded object, not needed here
fmt.Println(string(data))
_, err := u.service.PutObject(&s3.PutObjectInput{
Body: strings.NewReader(string(data)),
Bucket: &u.bucket,
Key: &u.key,
})
return 0, err
}

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bench/zipf.go Normal file
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package bench
import (
"fmt"
"flag"
"io/ioutil"
"context"
"math"
"math/rand"
"time"
)
// Zipf sets random bits according to the Zipf-Mandelbrot distribution.
// This distribution accepts two parameters, Exponent and Ratio, for both bitmaps and profiles.
// It also uses PermutationGenerator to permute IDs randomly.
type Zipf struct {
HasClient
Name string `json:"name"`
BaseBitmapID int64 `json:"base-bitmap-id"`
BaseProfileID int64 `json:"base-profile-id"`
BitmapIDRange int64 `json:"bitmap-id-range"`
ProfileIDRange int64 `json:"profile-id-range"`
Iterations int `json:"iterations"`
Seed int64 `json:"seed"`
DB string `json:"db"`
BitmapExponent float64 `json:"bitmap-exponent"`
BitmapRatio float64 `json:"bitmap-ratio"`
ProfileExponent float64 `json:"profile-exponent"`
ProfileRatio float64 `json:"profile-ratio"`
Operation string `json:"operation"`
bitmapRng *rand.Zipf
profileRng *rand.Zipf
bitmapPerm *PermutationGenerator
profilePerm *PermutationGenerator
}
// Usage returns the usage message to be printed.
func (b *Zipf) Usage() string {
return `
zipf sets random bits according to the Zipf distribution.
This is a power-law distribution controlled by two parameters.
Exponent, in the range (1, inf), with a default value of 1.001, controls
the "sharpness" of the distribution, with higher exponent being sharper.
Ratio, in the range (0, 1), with a default value of 0.25, controls the
maximum variation of the distribution, with higher ratio being more uniform.
Agent number modifies random seed.
Usage: zipf [arguments]
The following arguments are available:
-base-bitmap-id int
bits being set will all be greater than BaseBitmapID
-bitmap-id-range int
number of possible bitmap ids that can be set
-base-profile-id int
profile id num to start from
-profile-id-range int
number of possible profile ids that can be set
-iterations int
number of bits to set
-seed int
Seed for RNG
-db string
pilosa db to use
-bitmap-exponent float64
zipf exponent parameter for bitmap IDs
-bitmap-ratio float64
zipf probability ratio parameter for bitmap IDs
-profile-exponent float64
zipf exponent parameter for profile IDs
-profile-ratio float64
zipf probability ratio parameter for profile IDs
-client-type string
Can be 'single' (all agents hitting one host) or 'round_robin'
-operation string
Can be 'set' or 'clear'
-content-type string
protobuf or pql
`[1:]
}
// ConsumeFlags parses all flags up to the next non flag argument (argument does
// not start with "-" and isn't the value of a flag). It returns the remaining
// args.
func (b *Zipf) ConsumeFlags(args []string) ([]string, error) {
fs := flag.NewFlagSet("Zipf", flag.ContinueOnError)
fs.SetOutput(ioutil.Discard)
fs.Int64Var(&b.BaseBitmapID, "base-bitmap-id", 0, "")
fs.Int64Var(&b.BitmapIDRange, "bitmap-id-range", 100000, "")
fs.Int64Var(&b.BaseProfileID, "base-profile-id", 0, "")
fs.Int64Var(&b.ProfileIDRange, "profile-id-range", 100000, "")
fs.Int64Var(&b.Seed, "seed", 1, "")
fs.IntVar(&b.Iterations, "iterations", 100, "")
fs.StringVar(&b.DB, "db", "benchdb", "")
fs.Float64Var(&b.BitmapExponent, "bitmap-exponent", 1.01, "")
fs.Float64Var(&b.BitmapRatio, "bitmap-ratio", 0.25, "")
fs.Float64Var(&b.ProfileExponent, "profile-exponent", 1.01, "")
fs.Float64Var(&b.ProfileRatio, "profile-ratio", 0.25, "")
fs.StringVar(&b.ClientType, "client-type", "single", "")
fs.StringVar(&b.Operation, "operation", "set", "")
fs.StringVar(&b.ContentType, "content-type", "protobuf", "")
if err := fs.Parse(args); err != nil {
return nil, err
}
return fs.Args(), nil
}
// Offset is the true parameter used by the Zipf distribution, but the ratio,
// as defined here, is a simpler, readable way to define the distribution.
// Offset is in [1, inf), and its meaning depends on N (a pain for updating benchmark configs)
// ratio is in (0, 1), and its meaning does not depend on N.
// it is the ratio of the lowest probability in the distribution to the highest.
// ratio=0.01 corresponds to a very small offset - the most skewed distribution for a given pair (N, exp)
// ratio=0.99 corresponds to a very large offset - the most nearly uniform distribution for a given (N, exp)
func getZipfOffset(N int64, exp, ratio float64) float64 {
z := math.Pow(ratio, 1/exp)
return z * float64(N-1) / (1 - z)
}
// Init sets up the benchmark based on the agent number and initializes the
// client.
func (b *Zipf) Init(hosts []string, agentNum int) error {
b.Name = "zipf"
b.Seed = b.Seed + int64(agentNum)
rnd := rand.New(rand.NewSource(b.Seed))
bitmapOffset := getZipfOffset(b.BitmapIDRange, b.BitmapExponent, b.BitmapRatio)
b.bitmapRng = rand.NewZipf(rnd, b.BitmapExponent, bitmapOffset, uint64(b.BitmapIDRange-1))
profileOffset := getZipfOffset(b.ProfileIDRange, b.ProfileExponent, b.ProfileRatio)
b.profileRng = rand.NewZipf(rnd, b.ProfileExponent, profileOffset, uint64(b.ProfileIDRange-1))
b.bitmapPerm = NewPermutationGenerator(b.BitmapIDRange, b.Seed)
b.profilePerm = NewPermutationGenerator(b.ProfileIDRange, b.Seed+1)
if b.Operation != "set" && b.Operation != "clear" {
return fmt.Errorf("Unsupported operation: \"%s\" (must be \"set\" or \"clear\")", b.Operation)
}
return b.HasClient.Init(hosts, agentNum)
}
// Run runs the Zipf benchmark
func (b *Zipf) Run(ctx context.Context) map[string]interface{} {
results := make(map[string]interface{})
if b.client == nil {
results["error"] = fmt.Errorf("No client set for Zipf")
return results
}
operation := "SetBit"
if b.Operation == "clear" {
operation = "ClearBit"
}
s := NewStats()
var start time.Time
for n := 0; n < b.Iterations; n++ {
// generate IDs from Zipf distribution
bitmapIDOriginal := b.bitmapRng.Uint64()
profIDOriginal := b.profileRng.Uint64()
// permute IDs randomly, but repeatably
bitmapID := b.bitmapPerm.Next(int64(bitmapIDOriginal))
profID := b.profilePerm.Next(int64(profIDOriginal))
query := fmt.Sprintf("%s(%d, 'frame.n', %d)", operation, b.BaseBitmapID+int64(bitmapID), b.BaseProfileID+int64(profID))
start = time.Now()
_, err := b.client.ExecuteQuery(ctx, b.DB, query, true)
if err != nil {
results["error"] = fmt.Sprintf("Error executing query in zipf: %v", err)
return results
}
s.Add(time.Now().Sub(start))
}
AddToResults(s, results)
return results
}

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package pilosa
// #cgo CFLAGS:-mpopcnt
import (
"encoding/json"
"sort"
"github.com/pilosa/pilosa/internal"
"github.com/pilosa/pilosa/roaring"
)
// Bitmap represents a set of bits.
type Bitmap struct {
segments []BitmapSegment
// Attributes associated with the bitmap.
Attrs map[string]interface{}
}
// NewBitmap returns a new instance of Bitmap.
func NewBitmap(bits ...uint64) *Bitmap {
bm := &Bitmap{}
for _, i := range bits {
bm.SetBit(i)
}
return bm
}
// Merge merges data from other into b.
func (b *Bitmap) Merge(other *Bitmap) {
var segments []BitmapSegment
itr := newMergeSegmentIterator(b.segments, other.segments)
for s0, s1 := itr.next(); s0 != nil || s1 != nil; s0, s1 = itr.next() {
// Use the other bitmap's data if segment is missing.
if s0 == nil {
segments = append(segments, *s1)
continue
} else if s1 == nil {
segments = append(segments, *s0)
continue
}
// Otherwise merge.
s0.Merge(s1)
segments = append(segments, *s0)
}
b.segments = segments
b.InvalidateCount()
}
// IntersectionCount returns the number of intersections between b and other.
func (b *Bitmap) IntersectionCount(other *Bitmap) uint64 {
var n uint64
itr := newMergeSegmentIterator(b.segments, other.segments)
for s0, s1 := itr.next(); s0 != nil || s1 != nil; s0, s1 = itr.next() {
// Ignore non-overlapping segments.
if s0 == nil || s1 == nil {
continue
}
n += s0.IntersectionCount(s1)
}
return n
}
// Intersect returns the itersection of b and other.
func (b *Bitmap) Intersect(other *Bitmap) *Bitmap {
var segments []BitmapSegment
itr := newMergeSegmentIterator(b.segments, other.segments)
for s0, s1 := itr.next(); s0 != nil || s1 != nil; s0, s1 = itr.next() {
// Ignore non-overlapping segments.
if s0 == nil || s1 == nil {
continue
}
segments = append(segments, *s0.Intersect(s1))
}
return &Bitmap{segments: segments}
}
// Union returns the bitwise union of b and other.
func (b *Bitmap) Union(other *Bitmap) *Bitmap {
var segments []BitmapSegment
itr := newMergeSegmentIterator(b.segments, other.segments)
for s0, s1 := itr.next(); s0 != nil || s1 != nil; s0, s1 = itr.next() {
if s1 == nil {
segments = append(segments, *s0)
continue
} else if s0 == nil {
segments = append(segments, *s1)
continue
}
segments = append(segments, *s0.Union(s1))
}
return &Bitmap{segments: segments}
}
// Difference returns the diff of b and other.
func (b *Bitmap) Difference(other *Bitmap) *Bitmap {
var segments []BitmapSegment
itr := newMergeSegmentIterator(b.segments, other.segments)
for s0, s1 := itr.next(); s0 != nil || s1 != nil; s0, s1 = itr.next() {
if s0 == nil {
continue
} else if s1 == nil {
segments = append(segments, *s0)
continue
}
segments = append(segments, *s0.Difference(s1))
}
return &Bitmap{segments: segments}
}
// SetBit sets the i-th bit of the bitmap.
func (b *Bitmap) SetBit(i uint64) (changed bool) {
return b.createSegmentIfNotExists(i / SliceWidth).SetBit(i)
}
// ClearBit clears the i-th bit of the bitmap.
func (b *Bitmap) ClearBit(i uint64) (changed bool) {
s := b.segment(i / SliceWidth)
if s == nil {
return false
}
return s.ClearBit(i)
}
// segment returns a segment for a given slice.
// Returns nil if segment does not exist.
func (b *Bitmap) segment(slice uint64) *BitmapSegment {
if i := sort.Search(len(b.segments), func(i int) bool {
return b.segments[i].slice >= slice
}); i < len(b.segments) && b.segments[i].slice == slice {
return &b.segments[i]
}
return nil
}
func (b *Bitmap) createSegmentIfNotExists(slice uint64) *BitmapSegment {
i := sort.Search(len(b.segments), func(i int) bool {
return b.segments[i].slice >= slice
})
// Return exact match.
if i < len(b.segments) && b.segments[i].slice == slice {
return &b.segments[i]
}
// Insert new segment.
b.segments = append(b.segments, BitmapSegment{})
if i < len(b.segments) {
copy(b.segments[i+1:], b.segments[i:])
}
b.segments[i] = BitmapSegment{
slice: slice,
writable: true,
}
return &b.segments[i]
}
// InvalidateCount updates the cached count in the bitmap.
func (b *Bitmap) InvalidateCount() {
for i := range b.segments {
b.segments[i].InvalidateCount()
}
}
// Count returns the number of set bits in the bitmap.
func (b *Bitmap) Count() uint64 {
var n uint64
for i := range b.segments {
n += b.segments[i].Count()
}
return n
}
// MarshalJSON returns a JSON-encoded byte slice of b.
func (b *Bitmap) MarshalJSON() ([]byte, error) {
var o struct {
Attrs map[string]interface{} `json:"attrs"`
Bits []uint64 `json:"bits"`
}
o.Bits = b.Bits()
o.Attrs = b.Attrs
if o.Attrs == nil {
o.Attrs = make(map[string]interface{})
}
return json.Marshal(&o)
}
// Bits returns the bits in b as a slice of ints.
func (b *Bitmap) Bits() []uint64 {
a := make([]uint64, 0, b.Count())
for i := range b.segments {
a = append(a, b.segments[i].Bits()...)
}
return a
}
// encodeBitmap converts b into its internal representation.
func encodeBitmap(b *Bitmap) *internal.Bitmap {
if b == nil {
return nil
}
return &internal.Bitmap{
Bits: b.Bits(),
Attrs: encodeAttrs(b.Attrs),
}
}
// decodeBitmap converts b from its internal representation.
func decodeBitmap(pb *internal.Bitmap) *Bitmap {
if pb == nil {
return nil
}
b := NewBitmap()
b.Attrs = decodeAttrs(pb.Attrs)
for _, v := range pb.Bits {
b.SetBit(v)
}
return b
}
// Union performs a union on a slice of bitmaps.
func Union(bitmaps []*Bitmap) *Bitmap {
other := bitmaps[0]
for _, bm := range bitmaps[1:] {
other = other.Union(bm)
}
return other
}
// BitmapSegment holds a subset of a bitmap.
// This could point to a mmapped roaring bitmap or an in-memory bitmap. The
// width of the segment will always match the slice width.
type BitmapSegment struct {
// Slice this segment belongs to
slice uint64
// Underlying raw bitmap implementation.
// This is an mmapped bitmap if writable is false. Otherwise
// it is a heap allocated bitmap which can be manipulated.
data roaring.Bitmap
writable bool
// Bit count
n uint64
}
// Merge adds chunks from other to s.
// Chunks in s are overwritten if they exist in other.
func (s *BitmapSegment) Merge(other *BitmapSegment) {
s.ensureWritable()
itr := other.data.Iterator()
for v, eof := itr.Next(); !eof; v, eof = itr.Next() {
s.SetBit(v)
}
}
// IntersectionCount returns the number of intersections between s and other.
func (s *BitmapSegment) IntersectionCount(other *BitmapSegment) uint64 {
return s.data.IntersectionCount(&other.data)
}
// Intersect returns the itersection of s and other.
func (s *BitmapSegment) Intersect(other *BitmapSegment) *BitmapSegment {
data := s.data.Intersect(&other.data)
return &BitmapSegment{
data: *data,
slice: s.slice,
n: data.Count(),
}
}
// Union returns the bitwise union of s and other.
func (s *BitmapSegment) Union(other *BitmapSegment) *BitmapSegment {
data := s.data.Union(&other.data)
return &BitmapSegment{
data: *data,
slice: s.slice,
n: data.Count(),
}
}
// Difference returns the diff of s and other.
func (s *BitmapSegment) Difference(other *BitmapSegment) *BitmapSegment {
data := s.data.Difference(&other.data)
return &BitmapSegment{
data: *data,
slice: s.slice,
n: data.Count(),
}
}
// SetBit sets the i-th bit of the bitmap.
func (s *BitmapSegment) SetBit(i uint64) (changed bool) {
s.ensureWritable()
changed, _ = s.data.Add(i)
if changed {
s.n++
}
return changed
}
// ClearBit clears the i-th bit of the bitmap.
func (s *BitmapSegment) ClearBit(i uint64) (changed bool) {
s.ensureWritable()
changed, _ = s.data.Remove(i)
if changed {
s.n--
}
return changed
}
// InvalidateCount updates the cached count in the bitmap.
func (s *BitmapSegment) InvalidateCount() {
s.n = s.data.Count()
}
// Bits returns a list of all bits set in the segment.
func (s *BitmapSegment) Bits() []uint64 {
a := make([]uint64, 0, s.Count())
itr := s.data.Iterator()
for v, eof := itr.Next(); !eof; v, eof = itr.Next() {
a = append(a, v)
}
return a
}
// Count returns the number of set bits in the bitmap.
func (s *BitmapSegment) Count() uint64 { return s.n }
// ensureWritable clones the segment if it is pointing to non-writable data.
func (s *BitmapSegment) ensureWritable() {
if s.writable {
return
}
s.data = *s.data.Clone()
s.writable = true
}
// mergeSegmentIterator produces an iterator that loops through two sets of segments.
type mergeSegmentIterator struct {
a0, a1 []BitmapSegment
}
// newMergeSegmentIterator returns a new instance of mergeSegmentIterator.
func newMergeSegmentIterator(a0, a1 []BitmapSegment) mergeSegmentIterator {
return mergeSegmentIterator{a0: a0, a1: a1}
}
// next returns the next set of segments.
func (itr *mergeSegmentIterator) next() (s0, s1 *BitmapSegment) {
// Find current segments.
if len(itr.a0) > 0 {
s0 = &itr.a0[0]
}
if len(itr.a1) > 0 {
s1 = &itr.a1[0]
}
// Return if either or both are nil.
if s0 == nil && s1 == nil {
return
} else if s0 == nil {
itr.a1 = itr.a1[1:]
return
} else if s1 == nil {
itr.a0 = itr.a0[1:]
return
}
// Otherwise determine which is first.
if s0.slice < s1.slice {
itr.a0 = itr.a0[1:]
return s0, nil
} else if s0.slice > s1.slice {
itr.a1 = itr.a1[1:]
return s1, nil
}
// Return both if slices are equal.
itr.a0, itr.a1 = itr.a0[1:], itr.a1[1:]
return s0, s1
}

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@ -1,165 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"fmt"
"github.com/featurebasedb/featurebase/v3/disco"
"github.com/pkg/errors"
)
// Serializer is an interface for serializing pilosa types to bytes and back.
type Serializer interface {
Marshal(Message) ([]byte, error)
Unmarshal([]byte, Message) error
}
// NopSerializer represents a Serializer that doesn't do anything.
var NopSerializer Serializer = &nopSerializer{}
type nopSerializer struct{}
// Marshal is a no-op implementation of Serializer Marshal method.
func (*nopSerializer) Marshal(Message) ([]byte, error) { return nil, nil }
// Unmarshal is a no-op implementation of Serializer Unmarshal method.
func (*nopSerializer) Unmarshal([]byte, Message) error { return nil }
// broadcaster is an interface for broadcasting messages.
type broadcaster interface {
SendSync(Message) error
SendAsync(Message) error
SendTo(*disco.Node, Message) error
}
// Message is the interface implemented by all core pilosa types which can be serialized to messages.
// TODO add at least a single "isMessage()" method.
type Message interface{}
// NopBroadcaster represents a Broadcaster that doesn't do anything.
var NopBroadcaster broadcaster = &nopBroadcaster{}
type nopBroadcaster struct{}
// SendSync A no-op implementation of Broadcaster SendSync method.
func (nopBroadcaster) SendSync(Message) error { return nil }
// SendAsync A no-op implementation of Broadcaster SendAsync method.
func (nopBroadcaster) SendAsync(Message) error { return nil }
// SendTo is a no-op implementation of Broadcaster SendTo method.
func (nopBroadcaster) SendTo(*disco.Node, Message) error { return nil }
// Broadcast message types.
const (
messageTypeCreateShard = iota
messageTypeCreateIndex
messageTypeDeleteIndex
messageTypeCreateField
messageTypeDeleteField
messageTypeCreateView
messageTypeDeleteView
messageTypeClusterStatus
messageTypeUNUSED0 // used to be ResizeInstruction
messageTypeUNUSED1 // used to be ResizeInstructionComplete
messageTypeNodeState
messageTypeRecalculateCaches
messageTypeLoadSchemaMessage
messageTypeNodeEvent
messageTypeNodeStatus
messageTypeTransaction
messageTypeUNUSED2 // used to be ResizeNodeMessage
messageTypeUNUSED3 // used to be ResizeAbortMessage
messageTypeUpdateField
messageTypeDeleteDataframe
)
// MarshalInternalMessage serializes the pilosa message and adds pilosa internal
// type info which is used by the internal messaging stuff.
func MarshalInternalMessage(m Message, s Serializer) ([]byte, error) {
typ := getMessageType(m)
buf, err := s.Marshal(m)
if err != nil {
return nil, errors.Wrap(err, "marshaling")
}
return append([]byte{typ}, buf...), nil
}
func getMessage(typ byte) Message {
switch typ {
case messageTypeCreateShard:
return &CreateShardMessage{}
case messageTypeCreateIndex:
return &CreateIndexMessage{}
case messageTypeDeleteIndex:
return &DeleteIndexMessage{}
case messageTypeCreateField:
return &CreateFieldMessage{}
case messageTypeDeleteField:
return &DeleteFieldMessage{}
case messageTypeCreateView:
return &CreateViewMessage{}
case messageTypeDeleteView:
return &DeleteViewMessage{}
case messageTypeClusterStatus:
return &ClusterStatus{}
case messageTypeNodeState:
return &NodeStateMessage{}
case messageTypeRecalculateCaches:
return &RecalculateCaches{}
case messageTypeLoadSchemaMessage:
return &LoadSchemaMessage{}
case messageTypeNodeEvent:
return &NodeEvent{}
case messageTypeNodeStatus:
return &NodeStatus{}
case messageTypeTransaction:
return &TransactionMessage{}
case messageTypeUpdateField:
return &UpdateFieldMessage{}
case messageTypeDeleteDataframe:
return &DeleteDataframeMessage{}
default:
panic(fmt.Sprintf("unknown message type %d", typ))
}
}
func getMessageType(m Message) byte {
switch m.(type) {
case *CreateShardMessage:
return messageTypeCreateShard
case *CreateIndexMessage:
return messageTypeCreateIndex
case *DeleteIndexMessage:
return messageTypeDeleteIndex
case *CreateFieldMessage:
return messageTypeCreateField
case *DeleteFieldMessage:
return messageTypeDeleteField
case *CreateViewMessage:
return messageTypeCreateView
case *DeleteViewMessage:
return messageTypeDeleteView
case *ClusterStatus:
return messageTypeClusterStatus
case *NodeStateMessage:
return messageTypeNodeState
case *RecalculateCaches:
return messageTypeRecalculateCaches
case *LoadSchemaMessage:
return messageTypeLoadSchemaMessage
case *NodeEvent:
return messageTypeNodeEvent
case *NodeStatus:
return messageTypeNodeStatus
case *TransactionMessage:
return messageTypeTransaction
case *UpdateFieldMessage:
return messageTypeUpdateField
case *DeleteDataframeMessage:
return messageTypeDeleteDataframe
default:
panic(fmt.Sprintf("don't have type for message %#v", m))
}
}

284
bsi.go
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@ -1,284 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"math/bits"
"github.com/featurebasedb/featurebase/v3/roaring"
)
// BSIData contains BSI-structured data.
type BSIData []*Row
// PivotDescending loops over nonzero BSI values in descending order.
// For each value, the provided function is called with the value and a slice of the associated columns.
// If limit or offset are not-nil, they will be applied.
// Applying a limit or offset may modify the pointed-to value.
func (bsi BSIData) PivotDescending(filter *Row, branch uint64, limit, offset *uint64, fn func(uint64, ...uint64)) {
// This "pivot" algorithm works by treating the BSI data as a tree.
// Each branch of this tree corresponds to a power-of-2-sized range of BSI values.
// Each range is subdivided into 2 ranges of half size, which form lower branches.
// Eventually, a range of width 1 cannot be subdivided and forms a leaf.
// At each branch and leaf, there is a bitmap of all columns within the corresponding range.
// The lower branches are formed as a difference or intersect of the upper branch's bitmap with the BSI bit that subdivides the range.
// This function uses a depth-first search over this virtual tree.
switch {
case !filter.Any():
// There are no remaining data.
case offset != nil && *offset >= filter.Count():
// Skip this entire branch.
*offset -= filter.Count()
case limit != nil && *limit == 0:
// The limit has been reached.
// No more data is necessary.
case len(bsi) == 0:
// This is a leaf node.
cols := filter.Columns()
if offset != nil {
cols = cols[*offset:]
*offset = 0
}
if limit != nil {
if *limit < uint64(len(cols)) {
cols = cols[:*limit]
}
*limit -= uint64(len(cols))
}
fn(branch, cols...)
default:
// Pivot over the highest bit.
upperBranch, lowerBranch := branch|(1<<uint(len(bsi)-1)), branch
splitBit := bsi[len(bsi)-1]
lowerBits := bsi[:len(bsi)-1]
lowerBits.PivotDescending(filter.Intersect(splitBit), upperBranch, limit, offset, fn)
lowerBits.PivotDescending(filter.Difference(splitBit), lowerBranch, limit, offset, fn)
}
}
/*
// distribution generates a BSI histogram for the input.
// TODO: I forgot what I was going to use this for.
// Could probbably use this for:
// - quartile queries
// - TopN on int
func (bsi bsiData) distribution(filter *Row) bsiData {
var dist bsiData
bsi.PivotDescending(filter, 0, nil, nil, func(count uint64, values ...uint64) {
dist.insert(count, uint64(len(values)))
})
return dist
}
*/
var placeholderBitmap = roaring.NewBitmap()
// AddBSI adds two BSI bitmaps together.
// It does not handle sign and has no concept of overflow.
func AddBSI(x, y BSIData) BSIData {
// Accumulate row segments.
segments := make([][]RowSegment, len(x)+len(y))
xsegs, ysegs := segments[:len(x)], segments[len(x):]
for i, r := range x {
xsegs[i] = r.Segments
}
for i, r := range y {
ysegs[i] = r.Segments
}
var dst BSIData
var xbitmaps, ybitmaps []*roaring.Bitmap
for {
// Find the next shard.
next := ^uint64(0)
for _, s := range segments {
if len(s) == 0 {
continue
}
shard := s[0].shard
if shard < next {
next = shard
}
}
if next == ^uint64(0) {
// There are no remaining shards.
break
}
// Accumulate bitmaps for this shard.
xbitmaps, ybitmaps = xbitmaps[:0], ybitmaps[:0]
for i, segs := range xsegs {
if len(segs) == 0 || segs[0].shard != next {
continue
}
xsegs[i] = segs[1:]
bm := segs[0].data
if !bm.Any() {
continue
}
for len(xbitmaps) < i {
xbitmaps = append(xbitmaps, placeholderBitmap)
}
xbitmaps = append(xbitmaps, bm)
}
for i, segs := range ysegs {
if len(segs) == 0 || segs[0].shard != next {
continue
}
ysegs[i] = segs[1:]
bm := segs[0].data
if !bm.Any() {
continue
}
for len(ybitmaps) < i {
ybitmaps = append(ybitmaps, placeholderBitmap)
}
ybitmaps = append(ybitmaps, bm)
}
// Add the shard values together.
var out []*roaring.Bitmap
switch {
case len(xbitmaps) == 0:
// There are no values in x.
out = ybitmaps
case len(ybitmaps) == 0:
// There are no values in y.
out = xbitmaps
default:
out = roaring.Add(xbitmaps, ybitmaps)
}
// Convert the bitmaps to output segments.
for i, b := range out {
if !b.Any() {
continue
}
for len(dst) <= i {
dst = append(dst, NewRow())
}
dst[i].Segments = append(dst[i].Segments, RowSegment{
shard: next,
writable: true,
data: b,
n: b.Count(),
})
}
}
return dst
}
// rowBuilder builds a row quickly from individual values.
// It is optimized for the case in which values are generated sequentially.
type rowBuilder struct {
bm *roaring.Bitmap
mask *[1024]uint64
array []uint16
key uint64
n int32
}
// flushKey flushes the data at the current key to the bitmap.
func (b *rowBuilder) flushKey() {
var c *roaring.Container
switch {
case b.mask != nil:
c = roaring.NewContainerBitmapN(b.mask[:], b.n)
b.mask = nil
case len(b.array) > 0:
c = roaring.NewContainerArrayCopy(b.array)
b.array = b.array[:0]
default:
return
}
if b.bm == nil {
b.bm = roaring.NewBitmap()
}
if old := b.bm.Containers.Get(b.key); old != nil {
c = roaring.Union(c, old)
}
b.bm.Containers.Put(b.key, c)
}
// Add a value to the bitmap.
// Values must be added sequentially.
func (b *rowBuilder) Add(v uint64) {
vkey := v / (1 << 16)
if b.key != vkey {
// This is a new key, so flush the old one.
b.flushKey()
b.key = vkey
}
if b.mask != nil {
// Add to the mask.
b.n += int32(1 &^ (b.mask[uint16(v)/64] >> (v % 64)))
b.mask[uint16(v)/64] |= 1 << (v % 64)
return
}
// Add to an array.
b.array = append(b.array, uint16(v))
if len(b.array) >= roaring.ArrayMaxSize {
// The array is too big.
// Convert it to a bitmask.
m := [1024]uint64{}
for _, v := range b.array {
m[v/64] |= 1 << (v % 64)
}
b.n = int32(len(b.array))
b.array = b.array[:0]
b.mask = &m
}
}
// Build a Row from stored data.
// This resets the builder.
func (b *rowBuilder) Build() *Row {
// Flush the active key to the bitmap.
b.flushKey()
// Remove the bitmap and convert it to a Row.
bm := b.bm
b.bm = nil
if bm == nil {
return NewRow()
}
return NewRowFromBitmap(bm)
}
// bsiBuilder assembles BSI data.
// It is optimized for the case in which values are generated sequentially.
type bsiBuilder []rowBuilder
// Insert a value into the BSI data.
// Columns must be inserted sequentially, and duplicates are not allowed.
func (b *bsiBuilder) Insert(col, val uint64) {
for val != 0 {
i := bits.TrailingZeros64(val)
val &^= 1 << i
for len(*b) <= i {
*b = append(*b, rowBuilder{})
}
(*b)[i].Add(col)
}
}
// Build BSI data.
// This resets the builder.
func (b *bsiBuilder) Build() BSIData {
builders := *b
*b = builders[:0]
rows := make(BSIData, len(builders))
for i := range builders {
rows[i] = builders[i].Build()
}
return rows
}

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@ -1,160 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"fmt"
"math/rand"
"sort"
"testing"
)
// TestBSIAdd does a number of iterations. For each iteration, it
// generates a random number of ids, and two random values for each id
// to add together.
func TestBSIAdd(t *testing.T) {
// TODO wouldn't it be cool if our test suite had a randomized
// burn-in mode where you could run any test which supported it
// with a random seed and way more iterations?
rnd := rand.New(rand.NewSource(99))
//numZipf := rand.NewZipf(rnd, 1.5, 2, ShardWidth-1)
idZipf := rand.NewZipf(rnd, 1.8, 4, ShardWidth)
var builderA, builderB bsiBuilder
// a and b are generated slices of numbers to add together
var a, b []uint64
// idToIndex maps record ids to indexes in a and b
idToIndex := make(map[int]int)
// indexToID has the record id for each value in a and b
indexToID := []uint64{}
min := 999999999
max := 0
for iteration := 0; iteration < 1; iteration++ {
t.Run(fmt.Sprintf("%d", iteration), func(t *testing.T) {
// reset generated data
a, b = a[:0], b[:0]
indexToID = indexToID[:0]
for k := range idToIndex {
delete(idToIndex, k)
}
// z generates the values, they can be fairly large, but are usually small
z := rand.NewZipf(rnd, 1.3, 7, 1<<44)
id := -1
for i := 0; true; i++ {
// get the next id, skipping a random amount
id = id + int(idZipf.Uint64()+1)
if id >= ShardWidth {
if i < min {
min = i
}
if max < i {
max = i
}
break
}
idToIndex[id] = int(i)
indexToID = append(indexToID, uint64(id))
// append a random value to each data slice
a = append(a, z.Uint64())
b = append(b, z.Uint64())
}
// build the BSIs based on the data slices and generated IDs
for index, id := range indexToID {
va, vb := a[index], b[index]
builderA.Insert(uint64(id), va)
builderB.Insert(uint64(id), vb)
}
dataA, dataB := builderA.Build(), builderB.Build()
dataC := AddBSI(dataA, dataB)
// build results from added bsiData; results[i] should hold a[i]+b[i]
results := make([]uint64, len(a))
dataC.PivotDescending(NewRow().Union(dataC...), 0, nil, nil, func(count uint64, ids ...uint64) {
for _, id := range ids {
results[idToIndex[int(id)]] = count
}
})
for i, res := range results {
if res != a[i]+b[i] {
t.Errorf("Mismatch at %d\na: %v\nb: %v\nr: %v", i, a, b, results)
}
}
})
}
}
type bsiAddCase struct {
positions []uint64
a []uint64
b []uint64
}
func (b bsiAddCase) Len() int {
return len(b.positions)
}
// Less reports whether the element with
// index i should sort before the element with index j.
func (b bsiAddCase) Less(i, j int) bool {
return b.positions[i] < b.positions[j]
}
// Swap swaps the elements with indexes i and j.
func (b bsiAddCase) Swap(i, j int) {
b.positions[i], b.positions[j] = b.positions[j], b.positions[i]
b.a[i], b.a[j] = b.a[j], b.a[i]
b.b[i], b.b[j] = b.b[j], b.b[i]
}
// TestBSIAddCases tests specific cases of bsiAdd (would generally be
// pulled from randomly generated ones from TestBSIAdd upon failure).
func TestBSIAddCases(t *testing.T) {
tests := []bsiAddCase{
{
positions: []uint64{161311, 611110, 82544, 996022, 836077, 64964, 480737, 156534, 240525, 580896, 239236, 54607, 1019438, 894260, 17570, 884645, 936658, 682651, 987695, 390274},
a: []uint64{17, 1, 2846, 45437619, 23781, 36, 88, 168691, 13417, 1301, 10, 71, 0, 176, 1010, 21, 1, 509, 17, 4},
b: []uint64{24, 288, 12737, 14, 150, 21, 24, 354, 0, 19, 5, 150, 3940, 121, 25, 621, 7, 9023592401, 6033, 7},
},
{
positions: []uint64{17570, 54607},
a: []uint64{1010, 71},
b: []uint64{25, 150},
},
}
var builderA, builderB bsiBuilder
for i, tst := range tests {
t.Run(fmt.Sprintf("%d", i), func(t *testing.T) {
if len(tst.a) != len(tst.b) || len(tst.a) != len(tst.positions) {
t.Fatalf("Malformed test, a is %d, but b is %d", len(tst.a), len(tst.b))
}
sort.Sort(tst)
for i := 0; i < len(tst.a); i++ {
builderA.Insert(tst.positions[i], tst.a[i])
builderB.Insert(tst.positions[i], tst.b[i])
}
dataA, dataB := builderA.Build(), builderB.Build()
dataC := AddBSI(dataA, dataB)
// maps id to count
results := make(map[uint64]uint64)
dataC.PivotDescending(NewRow().Union(dataC...), 0, nil, nil, func(count uint64, ids ...uint64) {
for _, id := range ids {
results[id] = count
}
})
for i, id := range tst.positions {
if results[id] != tst.a[i]+tst.b[i] {
t.Fatalf("value %d mismatch, id: %d. got %d, want %d", i, id, results[id], tst.a[i]+tst.b[i])
}
}
})
}
}

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@ -1,110 +0,0 @@
package buffer
import (
"bytes"
"io"
"io/ioutil"
"os"
"sync"
)
// NewFileBuffer returns a file buffer which will use an in-memory buffer, until `max` bytes have been written, at which point it will write the contents of memory to a file, and continue writing future data to the file.
// The file will be written to `temp` directory. The buffer fulfills the io.Reader and io.Writer interface
func NewFileBuffer(max int, temp string) *FileBuffer {
return &FileBuffer{max: max, tempDir: temp}
}
type FileBuffer struct {
max int
buf bytes.Buffer
file *os.File
tempDir string
reading bool
files []*os.File
mu sync.Mutex
}
func (fb *FileBuffer) Write(p []byte) (n int, err error) {
if fb.reading {
panic("cannot write after read")
}
if fb.file != nil {
return fb.file.Write(p)
}
n, err = fb.buf.Write(p)
if err != nil {
return
}
if fb.buf.Len() > fb.max {
fb.file, err = ioutil.TempFile(fb.tempDir, "filebuffer-")
if err != nil {
return
}
_, err = io.Copy(fb.file, &fb.buf)
fb.buf.Reset()
}
return
}
func (fb *FileBuffer) Len() (int64, error) {
if fb.file == nil {
return int64(fb.buf.Len()), nil
}
fi, err := fb.file.Stat()
if err != nil {
return 0, err
}
return fi.Size(), nil
}
func (fb *FileBuffer) Read(p []byte) (n int, err error) {
if fb.file != nil {
if !fb.reading {
fb.reading = true
_, err = fb.file.Seek(0, 0)
if err != nil {
return
}
}
return fb.file.Read(p)
}
fb.reading = true
return fb.buf.Read(p)
}
func (fb *FileBuffer) Close() error {
if fb.file != nil {
name := fb.file.Name()
if err := fb.file.Close(); err != nil {
return err
}
for _, f := range fb.files {
f.Close()
}
fb.files = fb.files[:0]
fb.file = nil
return os.Remove(name)
}
return nil
}
func (fb *FileBuffer) Reset() error {
fb.mu.Lock()
defer fb.mu.Unlock()
fb.reading = false
fb.buf.Reset()
return fb.Close()
}
func (fb *FileBuffer) NewReader() (io.Reader, error) {
fb.mu.Lock()
defer fb.mu.Unlock()
fb.reading = true
if fb.file == nil {
return bytes.NewReader(fb.buf.Bytes()), nil
}
f, err := os.OpenFile(fb.file.Name(), os.O_RDONLY, 0)
fb.files = append(fb.files, f)
return f, err
}

View file

@ -1,262 +0,0 @@
package bufferpool
import (
"errors"
"fmt"
"sync"
)
// FrameID is the type for frame id
type FrameID int
// PageID is the type for page id
type PageID int
var pageSyncPool = sync.Pool{
New: func() any {
pg := new(Page)
pg.id = PageID(INVALID_PAGE)
pg.isDirty = false
pg.pinCount = 0
return pg
},
}
// BufferPool represents a buffer pool of pages
type BufferPool struct {
// the underlying storage
diskManager DiskManager
// the actual pages in the buffer pool
pages []*Page
// the replacer that will elect replacements when buffer pool is full
replacer *ClockReplacer
// the list of free frames
freeList []FrameID
// the map of frames to page ids to frame ids
// frame ids are the offset into pages
// if you ask the pool for page 673, this will know at
// what offset in pages page 673 will exist
pageTable map[PageID]FrameID
}
// TODO(pok) implement a lazy writer
// * if free list is 'low' then
// * increase size of cache if there is physical memory available
// * write out old pages and boot them from the cache to increase free list
// TODO(pok) implement a checkpoint that scans the pool and writes out dirty pages every
// minute or so
// NewBufferPool returns a buffer pool
func NewBufferPool(maxSize int, diskManager DiskManager) *BufferPool {
freeList := make([]FrameID, 0)
pages := make([]*Page, maxSize)
for i := 0; i < maxSize; i++ {
frameNumber := FrameID(i)
freeList = append(freeList, frameNumber)
}
clockReplacer := NewClockReplacer(maxSize)
return &BufferPool{
diskManager: diskManager,
pages: pages,
replacer: clockReplacer,
freeList: freeList,
pageTable: make(map[PageID]FrameID),
}
}
// Dumps all the pages in the buffer pool
func (b *BufferPool) Dump() {
fmt.Println()
fmt.Printf("------------------------------------------------------------------------------------------\n")
fmt.Printf("BUFFER POOL\n")
for _, p := range b.pages {
if p != nil {
p.Dump("")
}
}
fmt.Printf("------------------------------------------------------------------------------------------\n")
fmt.Println()
}
// FetchPage fetches the requested page from the buffer pool.
func (b *BufferPool) FetchPage(pageID PageID) (*Page, error) {
// if it is in buffer pool already then just return it
if frameID, ok := b.pageTable[pageID]; ok {
page := b.pages[frameID]
page.pinCount++
b.replacer.Pin(frameID)
return page, nil
}
// not in the buffer pool so try the free list or
// the replacer will vote a page off the island
frameID, isFromFreeList, err := b.getFrameID()
if err != nil {
return nil, err
}
if !isFromFreeList {
// if it didn't come from the freelist then
// remove page from current frame, writing it out if dirty
currentPage := b.pages[frameID]
if currentPage != nil {
if currentPage.isDirty {
b.diskManager.WritePage(currentPage)
}
delete(b.pageTable, currentPage.id)
}
}
// if we got to here, sorry, have to do an I/O
page, err := b.diskManager.ReadPage(pageID)
if err != nil {
return nil, err
}
page.pinCount = 1
b.pageTable[pageID] = frameID
pageSyncPool.Put(b.pages[frameID])
b.pages[frameID] = page
b.replacer.Pin(frameID)
return page, nil
}
// UnpinPage unpins the target page from the buffer pool
func (b *BufferPool) UnpinPage(pageID PageID) error {
if frameID, ok := b.pageTable[pageID]; ok {
page := b.pages[frameID]
page.DecPinCount()
if page.pinCount <= 0 {
b.replacer.Unpin(frameID)
}
return nil
}
return errors.New("could not find page")
}
// FlushPage Flushes the target page to disk
func (b *BufferPool) FlushPage(pageID PageID) bool {
if frameID, ok := b.pageTable[pageID]; ok {
page := b.pages[frameID]
page.DecPinCount()
b.diskManager.WritePage(page)
page.isDirty = false
return true
}
return false
}
// NewPage allocates a new page in the buffer pool with the disk manager help
func (b *BufferPool) NewPage() (*Page, error) {
// get a free frame
frameID, isFromFreeList, err := b.getFrameID()
if err != nil {
return nil, err
}
if !isFromFreeList {
// remove page from current frame
currentPage := b.pages[frameID]
if currentPage != nil {
if currentPage.isDirty {
b.diskManager.WritePage(currentPage)
}
delete(b.pageTable, currentPage.id)
}
}
// allocates new page
pageID, err := b.diskManager.AllocatePage()
if err != nil {
return nil, err
}
page := &Page{pageID, 1, false, [PAGE_SIZE]byte{}}
page.WritePageNumber(int32(pageID))
page.WriteFreeSpaceOffset(int16(PAGE_SIZE))
page.WriteNextPointer(int32(INVALID_PAGE))
page.WritePrevPointer(int32(INVALID_PAGE))
// update the frame table
b.pageTable[pageID] = frameID
pageSyncPool.Put(b.pages[frameID])
b.pages[frameID] = page
return page, nil
}
// ScratchPage returns a page outside the buffer pool - do not use if you intend the page
// to be in the buffer pool (use NewPage() for that)
// ScratchPage is intended to be used in cases where you need the Page primitives
// and will copy the scratch page back over a real page later
func (b *BufferPool) ScratchPage() *Page {
page := &Page{
id: PageID(INVALID_PAGE),
pinCount: 0,
isDirty: false,
data: [PAGE_SIZE]byte{},
}
page.WritePageNumber(int32(INVALID_PAGE))
page.WriteFreeSpaceOffset(int16(PAGE_SIZE))
page.WriteNextPointer(int32(INVALID_PAGE))
page.WritePrevPointer(int32(INVALID_PAGE))
return page
}
// DeletePage deletes a page from the buffer pool
func (b *BufferPool) DeletePage(pageID PageID) error {
var frameID FrameID
var ok bool
if frameID, ok = b.pageTable[pageID]; !ok {
return nil
}
page := b.pages[frameID]
if page.pinCount > 0 {
return errors.New("pin count greater than 0")
}
delete(b.pageTable, page.id)
b.replacer.Pin(frameID)
b.diskManager.DeallocatePage(pageID)
b.freeList = append(b.freeList, frameID)
return nil
}
// FlushAllpages flushes all the pages in the buffer pool to disk
// Yeah, never call this unless you know what you are doing
func (b *BufferPool) FlushAllpages() {
for pageID := range b.pageTable {
b.FlushPage(pageID)
}
}
func (b *BufferPool) getFrameID() (FrameID, bool, error) {
if len(b.freeList) > 0 {
frameID, newFreeList := b.freeList[0], b.freeList[1:]
b.freeList = newFreeList
return frameID, true, nil
}
victim, err := b.replacer.Victim()
return victim, false, err
}
// OnDiskSize exposes the on disk size of the backing store
// behind this buffer pool
func (b *BufferPool) OnDiskSize() int64 {
return b.diskManager.FileSize()
}
// Close closes the buffer pool
func (b *BufferPool) Close() {
b.diskManager.Close()
}

View file

@ -1,93 +0,0 @@
package bufferpool
import (
"errors"
)
type circularListNode struct {
key interface{}
value interface{}
next *circularListNode
prev *circularListNode
}
type circularList struct {
head *circularListNode
tail *circularListNode
size int
capacity int
}
func newCircularList(maxSize int) *circularList {
return &circularList{nil, nil, 0, maxSize}
}
func (c *circularList) find(key interface{}) *circularListNode {
ptr := c.head
for i := 0; i < c.size; i++ {
if ptr.key == key {
return ptr
}
ptr = ptr.next
}
return nil
}
func (c *circularList) hasKey(key interface{}) bool {
return c.find(key) != nil
}
func (c *circularList) insert(key interface{}, value interface{}) error {
if c.size == c.capacity {
return errors.New("list is full")
}
newNode := &circularListNode{key, value, nil, nil}
if c.size == 0 {
newNode.next = newNode
newNode.prev = newNode
c.head = newNode
c.tail = newNode
c.size++
return nil
}
node := c.find(key)
if node != nil {
node.value = value
return nil
}
newNode.next = c.head
newNode.prev = c.tail
c.tail.next = newNode
if c.head == c.tail {
c.head.next = newNode
}
c.tail = newNode
c.head.prev = c.tail
c.size++
return nil
}
func (c *circularList) remove(key interface{}) {
node := c.find(key)
if node == nil {
return
}
if c.size == 1 {
c.head = nil
c.tail = nil
c.size--
return
}
if node == c.head {
c.head = c.head.next
}
if node == c.tail {
c.tail = c.tail.prev
}
node.next.prev = node.prev
node.prev.next = node.next
c.size--
}

View file

@ -1,64 +0,0 @@
package bufferpool
import "errors"
// ClockReplacer implements a clock replacer algorithm
type ClockReplacer struct {
cList *circularList
clockHand **circularListNode
}
// NewClockReplacer instantiates a new clock replacer
func NewClockReplacer(poolSize int) *ClockReplacer {
cList := newCircularList(poolSize)
return &ClockReplacer{cList, &cList.head}
}
// Victim removes the victim frame as defined by the replacement policy
func (c *ClockReplacer) Victim() (FrameID, error) {
if c.cList.size == 0 {
return FrameID(INVALID_PAGE), errors.New("no victims available")
}
var victimFrameID FrameID
currentNode := (*c.clockHand)
for {
if currentNode.value.(bool) {
currentNode.value = false
c.clockHand = &currentNode.next
} else {
frameID := currentNode.key.(FrameID)
victimFrameID = frameID
c.clockHand = &currentNode.next
c.cList.remove(currentNode.key)
return victimFrameID, nil
}
}
}
// Unpin unpins a frame, indicating that it can now be victimized
func (c *ClockReplacer) Unpin(id FrameID) {
if !c.cList.hasKey(id) {
c.cList.insert(id, true)
if c.cList.size == 1 {
c.clockHand = &c.cList.head
}
}
}
// Pin pins a frame, indicating that it should not be victimized until it is unpinned
func (c *ClockReplacer) Pin(id FrameID) {
node := c.cList.find(id)
if node == nil {
return
}
if (*c.clockHand) == node {
c.clockHand = &(*c.clockHand).next
}
c.cList.remove(id)
}
// Size returns the size of the clock
func (c *ClockReplacer) Size() int {
return c.cList.size
}

View file

@ -1,21 +0,0 @@
package bufferpool
// DiskManager is responsible for interacting with disk
type DiskManager interface {
// reads a page from the disk
ReadPage(PageID) (*Page, error)
// writes a page to the disk
WritePage(*Page) error
// allocates a page
AllocatePage() (PageID, error)
// deallocates a page
DeallocatePage(PageID) error
// returns on disk file size
FileSize() int64
// closes and does any clean up
Close()
}

View file

@ -1,162 +0,0 @@
package bufferpool
import (
"errors"
"fmt"
"os"
uuid "github.com/satori/go.uuid"
)
// InMemDiskSpillingDiskManager is a memory implementation for a DiskManager interface
// that can spill to disk when a threshold is reached
type InMemDiskSpillingDiskManager struct {
// tracks the number of pages
numPages int
onDiskPages int
// tracks the number of pages we can consume before spilling
thresholdPages int
hasSpilled *struct{}
fd *os.File
// the data buffer
data []byte
}
// NewInMemDiskSpillingDiskManager returns a in-memory version of disk manager
func NewInMemDiskSpillingDiskManager(thresholdPages int) *InMemDiskSpillingDiskManager {
dm := &InMemDiskSpillingDiskManager{
numPages: 0,
thresholdPages: thresholdPages,
data: make([]byte, 0),
}
return dm
}
// ReadPage reads a page from pages
func (d *InMemDiskSpillingDiskManager) ReadPage(pageID PageID) (*Page, error) {
// check we're not asking for page out of range
if pageID < 0 || int(pageID) >= d.numPages {
return nil, errors.New("page not found")
}
// check that the offset is within range
offset := int(pageID) * PAGE_SIZE
var page = pageSyncPool.Get().(*Page)
// we have to do this stupid check because if -cpuprofile is set for go test, this
// the previous line return a weird nil-ish thing...
if page == (*Page)(nil) {
page = pageSyncPool.New().(*Page)
}
page.id = pageID
// do the read
if d.hasSpilled == nil {
if offset+PAGE_SIZE > len(d.data) {
return nil, errors.New("offset out of range")
}
b := copy(page.data[:], d.data[offset:offset+PAGE_SIZE])
fmt.Printf("bytes read: %d", b)
} else {
var err error
if offset+PAGE_SIZE > d.numPages*PAGE_SIZE {
return nil, errors.New("offset out of range")
}
_, err = d.fd.ReadAt(page.data[:], int64(offset))
if err != nil {
return nil, err
}
}
return page, nil
}
// WritePage writes a page in memory to pages
func (d *InMemDiskSpillingDiskManager) WritePage(page *Page) error {
// make sure the offset is sensible
offset := int(page.ID()) * PAGE_SIZE
// do the write
if d.hasSpilled == nil {
if offset+PAGE_SIZE > len(d.data) {
return errors.New("offset out of range")
}
copy(d.data[offset:], page.data[:])
} else {
var err error
if offset+PAGE_SIZE > d.numPages*PAGE_SIZE {
return errors.New("offset out of range")
}
_, err = d.fd.WriteAt(page.data[:], int64(offset))
if err != nil {
return err
}
// err = d.fd.Sync()
// if err != nil {
// return err
// }
}
return nil
}
// AllocatePage allocates a page and returns the page number
func (d *InMemDiskSpillingDiskManager) AllocatePage() (PageID, error) {
d.numPages = d.numPages + 1
pageID := PageID(d.numPages - 1)
if d.hasSpilled == nil {
// we have not spilled (yet), so make storage bigger
newData := make([]byte, PAGE_SIZE)
d.data = append(d.data, newData...)
// check to see if we need to spill
if d.numPages > d.thresholdPages {
fileUUID, err := uuid.NewV4()
if err != nil {
return PageID(INVALID_PAGE), err
}
// TODO(pok) we should try to tell the OS not to cache this file
d.fd, err = os.CreateTemp("", fmt.Sprintf("fb-ehash-%s", fileUUID.String()))
if err != nil {
return PageID(INVALID_PAGE), err
}
_, err = d.fd.WriteAt(d.data, 0)
if err != nil {
return PageID(INVALID_PAGE), err
}
d.data = []byte{}
d.hasSpilled = &struct{}{}
}
} else {
if d.numPages >= d.onDiskPages {
// grow the file by a chunk - 512 pages
d.onDiskPages += 512
var err error
size := int64(d.onDiskPages * PAGE_SIZE)
_, err = d.fd.WriteAt([]byte{0}, size-1)
if err != nil {
return PageID(INVALID_PAGE), err
}
}
}
return pageID, nil
}
// DeallocatePage removes page from disk
func (d *InMemDiskSpillingDiskManager) DeallocatePage(pageID PageID) error {
// nothing to do right now
return nil
}
func (d *InMemDiskSpillingDiskManager) FileSize() int64 {
return int64(len(d.data))
}
func (d *InMemDiskSpillingDiskManager) Close() {
// close and delete the file if we spilled
if d.fd != nil {
_ = d.fd.Close()
os.Remove(d.fd.Name())
}
}

View file

@ -1,371 +0,0 @@
package bufferpool
import (
"encoding/binary"
"errors"
"fmt"
)
const PAGE_SIZE int = 8192
const INVALID_PAGE int = -1
const PAGE_TYPE_BTREE_INTERNAL = 10
const PAGE_TYPE_BTREE_LEAF = 11
const PAGE_TYPE_HASH_TABLE = 12
// PAGE
// page size 8192 bytes
// byte aligned, big endian
// |====================================================|
// | offset | length | |
// |----------------------------------------------------|
// | header |
// |====================================================|
// | 0 | 4 | pageNumber (int32) |
// | 4 | 2 | pageType (int16) |
// | 6 | 2 | slotCount (int16) |
// | 8 | 2 | localDepth (int16) |
// | 10 | 2 | freeSpaceOffset (int16) |
// | 12 | 4 | prevPointer (int32) |
// | 16 | 4 | nextPointer (int32) |
// |====================================================|
// | <start of slot array 1..slotCount> |
// |----------------------------------------------------|
// | 20 | slotcount | slot entry is 2 int16 |
// | | * slotwidth | values (payloadOffset, |
// | | * #slots | payloadLength) |
// |----------------------------------------------------|
// | <free space> |
// |----------------------------------------------------|
// | <payload starting at freeSpaceOffset> |
// | payload entries are keylength (int16), key bytes, |
// | payload length (int32), payload bytes |
// |====================================================|
const PAGE_NUMBER_OFFSET = 0 // offset 0, length 4, end 4
const PAGE_TYPE_OFFSET = 4 // offset 4, length 2, end 6
const PAGE_SLOT_COUNT_OFFSET = 6 // offset 6, length 2, end 8
const PAGE_LOCAL_DEPTH_OFFSET = 8 // offset 8, length 2, end 10
const PAGE_FREE_SPACE_OFFSET = 10 // offset 10, length 2, end 12
const PAGE_PREV_POINTER_OFFSET = 12 // offset 12, length 4, end 16
const PAGE_NEXT_POINTER_OFFSET = 16 // offset 16, length 4, end 20
const PAGE_SLOTS_START_OFFSET = 20 // offset 20
// PAGE_SLOT_LENGTH is the size of the page slot key/value.
//
// key offset int16 //offset 0, length 2, end 2
// value offset int16 //offset 2, length 2, end 4
const PAGE_SLOT_LENGTH = 4
// Page represents a page on disk
type Page struct {
id PageID
pinCount int
isDirty bool
data [PAGE_SIZE]byte
}
type PageSlot struct {
KeyOffset int16
ValueOffset int16
}
func (s *PageSlot) KeyBytes(page *Page) []byte {
offset := s.KeyOffset
keyLen := int16(binary.BigEndian.Uint16(page.data[offset:]))
offset += 2
result := make([]byte, keyLen)
copy(result, page.data[offset:offset+keyLen])
return result
}
func (s *PageSlot) KeyAsInt(page *Page) int32 {
return int32(binary.BigEndian.Uint32(page.data[s.KeyOffset+2:]))
}
func (s *PageSlot) ValueBytes(page *Page) []byte {
offset := s.ValueOffset
valueLen := int32(binary.BigEndian.Uint32(page.data[offset:]))
offset += 4
result := make([]byte, valueLen)
copy(result, page.data[offset:int32(offset)+valueLen])
return result
}
func (s *PageSlot) ValueAsPagePointer(page *Page) int32 {
return int32(binary.BigEndian.Uint32(page.data[s.ValueOffset+4:]))
}
type PageChunk struct {
KeyLength int16
KeyBytes []byte
// TODO(pok) ValueBytes can be up to int32 long
// this requires an overflow page mechanism, that is not implemented
// yet, so be aware of this when storing stuff...
ValueLength int32
ValueBytes []byte
}
func (pc *PageChunk) Length() int {
return 2 + len(pc.KeyBytes) + 4 + len(pc.ValueBytes)
}
func (pc *PageChunk) ComputeKeyOffset(pageOffset int) int {
return pageOffset
}
func (pc *PageChunk) ComputeValueOffset(pageOffset int) int {
return pageOffset + 2 + len(pc.KeyBytes)
}
func (p *Page) WritePageNumber(pageNumber int32) {
p.id = PageID(pageNumber)
binary.BigEndian.PutUint32(p.data[PAGE_NUMBER_OFFSET:], uint32(pageNumber))
p.isDirty = true
}
func (p *Page) ReadPageNumber() int {
return int(binary.BigEndian.Uint32(p.data[PAGE_NUMBER_OFFSET:]))
}
func (p *Page) WritePageType(pageType int16) {
binary.BigEndian.PutUint16(p.data[PAGE_TYPE_OFFSET:], uint16(pageType))
p.isDirty = true
}
func (p *Page) ReadPageType() int16 {
return int16(binary.BigEndian.Uint16(p.data[PAGE_TYPE_OFFSET:]))
}
func (p *Page) WriteSlotCount(slotCount int16) {
binary.BigEndian.PutUint16(p.data[PAGE_SLOT_COUNT_OFFSET:], uint16(slotCount))
p.isDirty = true
}
func (p *Page) ReadSlotCount() int16 {
return int16(binary.BigEndian.Uint16(p.data[PAGE_SLOT_COUNT_OFFSET:]))
}
func (p *Page) WriteLocalDepth(localDepth int16) {
binary.BigEndian.PutUint16(p.data[PAGE_LOCAL_DEPTH_OFFSET:], uint16(localDepth))
p.isDirty = true
}
func (p *Page) ReadLocalDepth() int16 {
return int16(binary.BigEndian.Uint16(p.data[PAGE_LOCAL_DEPTH_OFFSET:]))
}
func (p *Page) ReadSlot(slot int16) PageSlot {
offset := PAGE_SLOTS_START_OFFSET + PAGE_SLOT_LENGTH*slot
keyOffset := int16(binary.BigEndian.Uint16(p.data[offset:]))
offset += 2
valueOffset := int16(binary.BigEndian.Uint16(p.data[offset:]))
return PageSlot{
KeyOffset: keyOffset,
ValueOffset: valueOffset,
}
}
func (p *Page) WriteSlot(slot int16, value PageSlot) {
offset := PAGE_SLOTS_START_OFFSET + PAGE_SLOT_LENGTH*slot
binary.BigEndian.PutUint16(p.data[offset:], uint16(value.KeyOffset))
offset += 2
binary.BigEndian.PutUint16(p.data[offset:], uint16(value.ValueOffset))
}
func (p *Page) WriteFreeSpaceOffset(offset int16) {
binary.BigEndian.PutUint16(p.data[PAGE_FREE_SPACE_OFFSET:], uint16(offset))
p.isDirty = true
}
func (p *Page) ReadFreeSpaceOffset() int16 {
return int16(binary.BigEndian.Uint16(p.data[PAGE_FREE_SPACE_OFFSET:]))
}
func (p *Page) WritePrevPointer(prevPointer int32) {
binary.BigEndian.PutUint32(p.data[PAGE_PREV_POINTER_OFFSET:], uint32(prevPointer))
p.isDirty = true
}
func (p *Page) ReadPrevPointer() int {
return int(binary.BigEndian.Uint32(p.data[PAGE_PREV_POINTER_OFFSET:]))
}
func (p *Page) WriteNextPointer(nextPointer int32) {
binary.BigEndian.PutUint32(p.data[PAGE_NEXT_POINTER_OFFSET:], uint32(nextPointer))
p.isDirty = true
}
func (p *Page) ReadNextPointer() int {
return int(binary.BigEndian.Uint32(p.data[PAGE_NEXT_POINTER_OFFSET:]))
}
func (p *Page) WriteChunk(offset int16, chunk PageChunk) {
binary.BigEndian.PutUint16(p.data[offset:], uint16(chunk.KeyLength))
offset += 2
copy(p.data[offset:], chunk.KeyBytes)
offset += int16(len(chunk.KeyBytes))
binary.BigEndian.PutUint32(p.data[offset:], uint32(chunk.ValueLength))
offset += 4
copy(p.data[offset:], chunk.ValueBytes)
p.isDirty = true
}
func (p *Page) ReadChunk(offset int16) PageChunk {
keyLen := int16(binary.BigEndian.Uint16(p.data[offset:]))
offset += 2
keyBytes := make([]byte, keyLen)
copy(keyBytes, p.data[offset:offset+keyLen])
offset += keyLen
valueLen := int32(binary.BigEndian.Uint32(p.data[offset:]))
offset += 4
valueBytes := make([]byte, valueLen)
copy(valueBytes, p.data[offset:int32(offset)+valueLen])
return PageChunk{
KeyLength: keyLen,
KeyBytes: keyBytes,
ValueLength: valueLen,
ValueBytes: valueBytes,
}
}
func (p *Page) FreeSpace() int16 {
freeSpaceOffset := p.ReadFreeSpaceOffset()
freespace := freeSpaceOffset - (p.ReadSlotCount()*PAGE_SLOT_LENGTH + PAGE_SLOT_LENGTH + PAGE_SLOTS_START_OFFSET)
return freespace
}
func (p *Page) WriteKeyValueInSlot(slotNumber int16, key []byte, value []byte) error {
freeSpaceOffset := p.ReadFreeSpaceOffset()
// build a chunk
chunk := PageChunk{
KeyLength: int16(len(key)),
KeyBytes: key,
ValueLength: int32(len(value)),
ValueBytes: value,
}
// compute the new free space offset
freeSpaceOffset -= int16(chunk.Length())
// check we won't blow free space on page
slotCount := p.ReadSlotCount()
slotEndOffset := slotCount*PAGE_SLOT_LENGTH + PAGE_SLOT_LENGTH + PAGE_SLOTS_START_OFFSET
// DEBUG!!
//fmt.Printf("freeSpaceOffset: %d, slotCount: %d, slotCount*4 + 4 + 20: %d, freeSpace: %d\n", freeSpaceOffset, slotCount, slotEndOffset, freeSpaceOffset-slotEndOffset)
if freeSpaceOffset-slotEndOffset <= 0 {
return errors.New("page is full")
}
keyOffset := chunk.ComputeKeyOffset(int(freeSpaceOffset))
valueOffset := chunk.ComputeValueOffset(int(freeSpaceOffset))
p.WriteChunk(freeSpaceOffset, chunk)
// update the free space offset
p.WriteFreeSpaceOffset(int16(freeSpaceOffset))
// make a slot
slot := PageSlot{
KeyOffset: int16(keyOffset),
ValueOffset: int16(valueOffset),
}
// write the slot
p.WriteSlot(slotNumber, slot)
return nil
}
func (p *Page) WritePage(page *Page) {
// copy everything but pageNumber & pageType
offset := PAGE_SLOT_COUNT_OFFSET
copy(page.data[offset:], p.data[offset:offset+PAGE_SIZE-offset])
}
func (p *Page) PinCount() int {
return p.pinCount
}
func (p *Page) ID() PageID {
return p.id
}
func (p *Page) DecPinCount() {
if p.pinCount > 0 {
p.pinCount--
}
}
type PageSlotIterator struct {
page *Page
slotCount int16
cursor int16
}
func NewPageSlotIterator(page *Page, fromSlot int16) *PageSlotIterator {
i := &PageSlotIterator{
page: page,
slotCount: page.ReadSlotCount(),
cursor: fromSlot,
}
return i
}
func (i *PageSlotIterator) Next() *PageSlot {
if i.cursor < i.slotCount {
s := i.page.ReadSlot(i.cursor)
i.cursor++
return &s
}
return nil
}
func (i *PageSlotIterator) Cursor() int16 {
return i.cursor
}
func (pg *Page) Dump(label string) {
indent := 0
if len(label) > 0 {
fmt.Printf("%s%s:\n", fmt.Sprintf("%*s", indent, ""), label)
indent += 4
}
pageType := pg.ReadPageType()
fmt.Printf("%sPAGE(%d) pageType: %d slotCount: %d, prevPtr: %d, nextPtr: %d\n", fmt.Sprintf("%*s", indent, ""), pg.ID(), pageType, pg.ReadSlotCount(), pg.ReadPrevPointer(), pg.ReadNextPointer())
fmt.Printf("%sKEYS: -->\n", fmt.Sprintf("%*s", indent, ""))
indent += 4
// get the keys off the page
keys := make([]int, 0)
pointers := make([]int, 0)
iter := NewPageSlotIterator(pg, 0)
for {
ps := iter.Next()
if ps == nil {
break
}
keys = append(keys, int(ps.KeyAsInt(pg)))
if pageType == /*nodeTypeInternal*/ 10 {
pointers = append(pointers, int(ps.ValueAsPagePointer(pg)))
}
}
if pageType == /*nodeTypeLeaf*/ 11 {
for _, key := range keys {
fmt.Printf("%s(%d)\n", fmt.Sprintf("%*s", indent, ""), key)
}
} else {
for idx, key := range keys {
ptr := pointers[idx]
fmt.Printf("%s(%d, %d)\n", fmt.Sprintf("%*s", indent, ""), key, ptr)
}
ptr := pg.ReadNextPointer()
fmt.Printf("%s(-->, %d)\n", fmt.Sprintf("%*s", indent, ""), ptr)
}
}

29
build/build.go Normal file
View file

@ -0,0 +1,29 @@
package build
import (
"fmt"
"io"
"io/ioutil"
"os"
"os/exec"
)
func Binary(pkg, goos, goarch string) (io.Reader, error) {
binFile, err := ioutil.TempFile("", "pilosactl")
if err != nil {
return nil, fmt.Errorf("build binary: %v", err)
}
com := exec.Command("go", "build", "-o", binFile.Name(), pkg)
com.Env = append([]string{"GOOS=" + goos, "GOARCH=" + goarch}, os.Environ()...)
err = com.Run()
if err != nil {
return nil, err
}
f, err := os.Open(binFile.Name())
if err != nil {
return nil, err
}
return f, nil
}

569
cache.go
View file

@ -1,97 +1,69 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"bytes"
"encoding/json"
"fmt"
"io"
"sort"
"sync"
"time"
"github.com/featurebasedb/featurebase/v3/lru"
pb "github.com/featurebasedb/featurebase/v3/proto"
"github.com/pkg/errors"
"github.com/golang/groupcache/lru"
"github.com/pilosa/pilosa/internal"
)
const (
// thresholdFactor is used to calculate the threshold for new items entering the cache
thresholdFactor = 1.1
)
// cache represents a cache of counts.
type cache interface {
Add(id uint64, n uint64)
BulkAdd(id uint64, n uint64)
Get(id uint64) uint64
// Cache represents a cache for bitmap counts.
type Cache interface {
Add(bitmapID uint64, n uint64)
Get(bitmapID uint64) uint64
Len() int
// Returns a list of all IDs.
IDs() []uint64
// Returns a list of all bitmap IDs.
BitmapIDs() []uint64
// Soft ask for the cache to be rebuilt - may not if it has been done recently.
// Updates the cache, if necessary.
Invalidate()
// Rebuilds the cache.
Recalculate()
// Returns an ordered list of the top ranked bitmaps.
Top() []bitmapPair
// Clear removes everything from the cache. If possible it should leave allocated structures in place to be reused.
Clear()
Top() []BitmapPair
}
// lruCache represents a least recently used Cache implementation.
type lruCache struct {
// LRUCache represents a least recently used Cache implemenation.
type LRUCache struct {
cache *lru.Cache
counts map[uint64]uint64
// maxEntries is saved to support Clear which recreates the cache.
maxEntries uint32
}
// newLRUCache returns a new instance of LRUCache.
func newLRUCache(maxEntries uint32) *lruCache {
c := &lruCache{
cache: lru.New(int(maxEntries)),
counts: make(map[uint64]uint64),
maxEntries: maxEntries,
// NewLRUCache returns a new instance of LRUCache.
func NewLRUCache(maxEntries int) *LRUCache {
c := &LRUCache{
cache: lru.New(maxEntries),
counts: make(map[uint64]uint64),
}
c.cache.OnEvicted = c.onEvicted
return c
}
// BulkAdd adds a count to the cache unsorted. You should Invalidate after completion.
func (c *lruCache) BulkAdd(id, n uint64) {
c.Add(id, n)
// Add adds a bitmap to the cache.
func (c *LRUCache) Add(bitmapID, n uint64) {
c.cache.Add(bitmapID, n)
c.counts[bitmapID] = n
}
// Add adds a count to the cache.
func (c *lruCache) Add(id, n uint64) {
c.cache.Add(id, n)
c.counts[id] = n
}
// Get returns a count for a given id.
func (c *lruCache) Get(id uint64) uint64 {
n, _ := c.cache.Get(id)
// Get returns a bitmap with a given id.
func (c *LRUCache) Get(bitmapID uint64) uint64 {
n, _ := c.cache.Get(bitmapID)
nn, _ := n.(uint64)
return nn
}
// Len returns the number of items in the cache.
func (c *lruCache) Len() int { return c.cache.Len() }
func (c *LRUCache) Len() int { return c.cache.Len() }
// Invalidate is a no-op.
func (c *lruCache) Invalidate() {}
func (c *LRUCache) Invalidate() {}
// Recalculate is a no-op.
func (c *lruCache) Recalculate() {}
// IDs returns a list of all IDs in the cache.
func (c *lruCache) IDs() []uint64 {
// BitmapIDs returns a list of all bitmap IDs in the cache.
func (c *LRUCache) BitmapIDs() []uint64 {
a := make([]uint64, 0, len(c.counts))
for id := range c.counts {
a = append(a, id)
@ -101,382 +73,183 @@ func (c *lruCache) IDs() []uint64 {
}
// Top returns all counts in the cache.
func (c *lruCache) Top() []bitmapPair {
a := make([]bitmapPair, 0, len(c.counts))
func (c *LRUCache) Top() []BitmapPair {
a := make([]BitmapPair, 0, len(c.counts))
for id, n := range c.counts {
a = append(a, bitmapPair{
a = append(a, BitmapPair{
ID: id,
Count: n,
Count: uint64(n),
})
}
pairs := bitmapPairs(a)
sort.Sort(&pairs)
sort.Sort(BitmapPairs(a))
return a
}
func (c *lruCache) Clear() {
for k := range c.counts {
delete(c.counts, k)
}
c.cache = lru.New(int(c.maxEntries))
}
func (c *lruCache) onEvicted(key lru.Key, _ interface{}) { delete(c.counts, key.(uint64)) }
func (c *LRUCache) onEvicted(key lru.Key, _ interface{}) { delete(c.counts, key.(uint64)) }
// Ensure LRUCache implements Cache.
var _ cache = &lruCache{}
var _ Cache = &LRUCache{}
// rankCache represents a cache with sorted entries.
type rankCache struct {
// TODO why does this have a lock and lruCache doesn't?
mu sync.Mutex
entries map[uint64]uint64
rankings bitmapPairs // cached, ordered list
rankingsRead bool
dirty bool
// RankCache represents a cache with sorted entries.
type RankCache struct {
entries map[uint64]uint64
rankings []BitmapPair // cached, ordered list
updateN int
updateTime time.Time
// maxEntries is the user defined size of the cache
maxEntries uint32
// thresholdBuffer is used the calculate the lowest cached threshold value
// This threshold determines what new items are added to the cache
thresholdBuffer int
// thresholdValue is the value of the last item in the cache
thresholdValue uint64
ThresholdLength int
ThresholdIndex int
ThresholdValue uint64
}
// NewRankCache returns a new instance of RankCache.
func NewRankCache(maxEntries uint32) *rankCache {
return &rankCache{
maxEntries: maxEntries,
thresholdBuffer: int(thresholdFactor * float64(maxEntries)),
entries: make(map[uint64]uint64),
func NewRankCache() *RankCache {
return &RankCache{
entries: make(map[uint64]uint64),
}
}
func (c *rankCache) Clear() {
c.mu.Lock()
defer c.mu.Unlock()
for k := range c.entries {
delete(c.entries, k)
}
c.rankings = c.rankings[:0]
c.rankingsRead = false
c.dirty = false
c.updateN = 0
c.updateTime = time.Time{}
c.thresholdValue = 0
}
// Add adds a count to the cache.
func (c *rankCache) Add(id uint64, n uint64) {
c.mu.Lock()
defer c.mu.Unlock()
// Flag the cache as dirty.
// This forces recalculation if top is called before the cache is recalculated.
c.dirty = true
// Ignore if the column count is below the threshold,
// unless the count is 0, which is effectively used
// to clear the cache value.
if n < c.thresholdValue && n > 0 {
delete(c.entries, id)
// Add adds a bitmap to the cache.
func (c *RankCache) Add(bitmapID uint64, n uint64) {
// Ignore if the bit count on the bitmap is below the threshold.
if n < c.ThresholdValue {
return
}
c.entries[id] = n
// Add to cache.
c.entries[bitmapID] = n
c.invalidate()
}
// BulkAdd adds a count to the cache unsorted. You should Invalidate after completion.
func (c *rankCache) BulkAdd(id uint64, n uint64) {
c.mu.Lock()
defer c.mu.Unlock()
// Flag the cache as dirty.
// This forces recalculation if top is called before the cache is recalculated.
c.dirty = true
if n < c.thresholdValue {
delete(c.entries, id)
return
}
c.entries[id] = n
// FB-1206: Periodically invalidate the cache when we are bulk loading
// as this can take up an upbounded amount of memory. This is especially
// true when restoring shards as all rows will be added.
if len(c.entries) > int(2*c.maxEntries) {
CounterRecalculateCache.Inc()
c.recalculate()
// If size is larger than the threshold then trim it.
if len(c.entries) > c.ThresholdLength {
c.update()
for id, n := range c.entries {
if n <= c.ThresholdValue {
delete(c.entries, id)
}
}
}
}
// Get returns a count for a given id.
func (c *rankCache) Get(id uint64) uint64 {
c.mu.Lock()
defer c.mu.Unlock()
return c.entries[id]
}
// Get returns a bitmap with a given id.
func (c *RankCache) Get(bitmapID uint64) uint64 { return c.entries[bitmapID] }
// Len returns the number of items in the cache.
func (c *rankCache) Len() int {
c.mu.Lock()
defer c.mu.Unlock()
return len(c.entries)
}
func (c *RankCache) Len() int { return len(c.entries) }
// IDs returns a list of all IDs in the cache.
func (c *rankCache) IDs() []uint64 {
c.mu.Lock()
defer c.mu.Unlock()
if len(c.entries) == 0 {
return nil
}
ids := make([]uint64, 0, len(c.entries))
// BitmapIDs returns a list of all bitmap IDs in the cache.
func (c *RankCache) BitmapIDs() []uint64 {
a := make([]uint64, 0, len(c.entries))
for id := range c.entries {
ids = append(ids, id)
a = append(a, id)
}
sort.Sort(uint64Slice(ids))
return ids
sort.Sort(uint64Slice(a))
return a
}
// Invalidate recalculates the entries by rank.
func (c *rankCache) Invalidate() {
c.mu.Lock()
defer c.mu.Unlock()
c.invalidate()
}
// Recalculate rebuilds the cache.
func (c *rankCache) Recalculate() {
c.mu.Lock()
defer c.mu.Unlock()
CounterRecalculateCache.Inc()
c.recalculate()
}
func (c *rankCache) invalidate() {
// Don't invalidate more than once every X seconds.
// TODO: consider making this configurable.
if time.Since(c.updateTime).Seconds() < 10 {
// Skipping recalculation means that the ranked cache's growth is unbounded.
// This is somewhat necessary for now since recalculation is not cheap.
// The cache will remain flagged as dirty and will be recalculated if Top is called.
// This may cause unexpected memory growth, so record it in metrics for debugging purposes.
CounterInvalidateCacheSkipped.Inc()
// Ensure that we're marked as dirty even if we weren't otherwise.
c.dirty = true
return
// Invalidate reorders the entries, if necessary.
func (c *RankCache) Invalidate() {
// Update if there aren't many items or it hasn't been updated recently.
if len(c.rankings) < 50 || (c.updateN > 0 && time.Since(c.updateTime) > 5*time.Minute) {
c.update()
}
CounterInvalidateCache.Inc()
c.recalculate()
}
func (c *rankCache) recalculate() {
if c.rankingsRead {
c.rankings = nil
c.rankingsRead = false
}
// update reorders the entries by rank.
func (c *RankCache) update() {
// Convert cache to a sorted list.
rankings := c.rankings[:0]
if cap(rankings) < len(c.entries) {
rankings = make([]bitmapPair, 0, len(c.entries))
}
for id, cnt := range c.entries {
rankings = append(rankings, bitmapPair{
rankings := make([]BitmapPair, 0, len(c.entries))
for id, n := range c.entries {
rankings = append(rankings, BitmapPair{
ID: id,
Count: cnt,
Count: n,
})
}
c.rankings = rankings
sort.Sort(&c.rankings)
sort.Sort(BitmapPairs(rankings))
// Store the count of the item at the threshold index.
length := len(c.rankings)
GaugeRankCacheLength.Set(float64(length))
var removeItems []bitmapPair // cached, ordered list
if length > int(c.maxEntries) {
c.thresholdValue = rankings[c.maxEntries].Count
removeItems = c.rankings[c.maxEntries:]
c.rankings = c.rankings[0:c.maxEntries]
c.rankings = rankings
if len(c.rankings) > c.ThresholdIndex {
c.ThresholdValue = rankings[c.ThresholdIndex].Count
} else {
c.thresholdValue = 1
c.ThresholdValue = 1
}
// Reset counters.
c.updateTime, c.updateN = time.Now(), 0
// If size is larger than the threshold then trim it.
if len(c.entries) > c.thresholdBuffer {
CounterCacheThresholdReached.Inc()
for _, pair := range removeItems {
delete(c.entries, pair.ID)
}
}
// The cache is no longer dirty.
c.dirty = false
}
// Top returns an ordered list of pairs.
func (c *rankCache) Top() []bitmapPair {
c.mu.Lock()
defer c.mu.Unlock()
if c.dirty {
// The cache is dirty, so we need to recalculate it to get a consistent view.
CounterReadDirtyCache.Inc()
c.recalculate()
}
c.rankingsRead = true
return c.rankings
}
// Top returns an ordered list of bitmaps.
func (c *RankCache) Top() []BitmapPair { return c.rankings }
// WriteTo writes the cache to w.
func (c *rankCache) WriteTo(w io.Writer) (n int64, err error) {
func (c *RankCache) WriteTo(w io.Writer) (n int64, err error) {
panic("FIXME: TODO")
}
// ReadFrom read from r into the cache.
func (c *rankCache) ReadFrom(r io.Reader) (n int64, err error) {
func (c *RankCache) ReadFrom(r io.Reader) (n int64, err error) {
panic("FIXME: TODO")
}
// Ensure RankCache implements Cache.
var _ cache = &rankCache{}
var _ Cache = &RankCache{}
// bitmapPair represents a id/count pair with an associated identifier.
type bitmapPair struct {
// BitmapPair represents a bitmap with an associated identifier.
type BitmapPair struct {
ID uint64
Count uint64
}
// bitmapPairs is a sortable list of BitmapPair objects.
type bitmapPairs []bitmapPair
// BitmapPairs is a sortable list of BitmapPair objects.
type BitmapPairs []BitmapPair
func (p *bitmapPairs) Swap(i, j int) { (*p)[i], (*p)[j] = (*p)[j], (*p)[i] }
func (p *bitmapPairs) Len() int { return len(*p) }
func (p *bitmapPairs) Less(i, j int) bool { return (*p)[i].Count > (*p)[j].Count }
func (p BitmapPairs) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
func (p BitmapPairs) Len() int { return len(p) }
func (p BitmapPairs) Less(i, j int) bool { return p[i].Count > p[j].Count }
// Pair holds an id/count pair.
type Pair struct {
ID uint64 `json:"id"`
Key string `json:"key"`
Key uint64 `json:"key"`
Count uint64 `json:"count"`
}
// PairField is a Pair with its associated field.
type PairField struct {
Pair Pair
Field string
}
func (p PairField) Clone() (r PairField) {
return PairField{
Pair: p.Pair,
Field: p.Field,
func encodePair(p Pair) *internal.Pair {
return &internal.Pair{
Key: p.Key,
Count: p.Count,
}
}
// ToTable implements the ToTabler interface.
func (p PairField) ToTable() (*pb.TableResponse, error) {
return pb.RowsToTable(p, 1)
}
// ToRows implements the ToRowser interface.
func (p PairField) ToRows(callback func(*pb.RowResponse) error) error {
if p.Pair.Key != "" {
return callback(&pb.RowResponse{
Headers: []*pb.ColumnInfo{
{Name: p.Field, Datatype: "string"},
{Name: "count", Datatype: "uint64"},
},
Columns: []*pb.ColumnResponse{
{ColumnVal: &pb.ColumnResponse_StringVal{StringVal: p.Pair.Key}},
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: p.Pair.Count}},
},
})
} else {
return callback(&pb.RowResponse{
Headers: []*pb.ColumnInfo{
{Name: p.Field, Datatype: "uint64"},
{Name: "count", Datatype: "uint64"},
},
Columns: []*pb.ColumnResponse{
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: p.Pair.ID}},
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: p.Pair.Count}},
},
})
func decodePair(pb *internal.Pair) Pair {
return Pair{
Key: pb.Key,
Count: pb.Count,
}
}
// MarshalJSON marshals PairField into a JSON-encoded byte slice,
// excluding `Field`.
func (p PairField) MarshalJSON() ([]byte, error) {
return json.Marshal(p.Pair)
}
// Pairs is a sortable slice of Pair objects.
type Pairs []Pair
func (p Pairs) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
func (p Pairs) Len() int { return len(p) }
func (p Pairs) Less(i, j int) bool { return p[i].Count > p[j].Count }
// pairHeap is a heap implementation over a group of Pairs.
type pairHeap struct {
Pairs
}
// Less implemets the Sort interface.
// reports whether the element with index i should sort before the element with index j.
func (p pairHeap) Less(i, j int) bool { return p.Pairs[i].Count < p.Pairs[j].Count }
// Push appends the element onto the Pair slice.
func (p *Pairs) Push(x interface{}) {
// Push and Pop use pointer receivers because they modify the slice's length,
// not just its contents.
*p = append(*p, x.(Pair))
}
// Pop removes the minimum element from the Pair slice.
func (p *Pairs) Pop() interface{} {
old := *p
n := len(old)
x := old[n-1]
*p = old[0 : n-1]
return x
}
// Add merges other into p and returns a new slice.
func (p Pairs) Add(other []Pair) []Pair {
// Create lookup of key/counts.
m := make(map[uint64]uint64, len(p))
for _, pair := range p {
m[pair.ID] = pair.Count
m[pair.Key] = pair.Count
}
// Add/merge from other.
for _, pair := range other {
m[pair.ID] += pair.Count
m[pair.Key] += pair.Count
}
// Convert back to slice.
a := make([]Pair, 0, len(m))
for k, v := range m {
a = append(a, Pair{ID: k, Count: v})
a = append(a, Pair{Key: k, Count: v})
}
return a
}
@ -485,7 +258,7 @@ func (p Pairs) Add(other []Pair) []Pair {
func (p Pairs) Keys() []uint64 {
a := make([]uint64, len(p))
for i := range p {
a[i] = p[i].ID
a[i] = p[i].Key
}
return a
}
@ -494,7 +267,7 @@ func (p Pairs) String() string {
var buf bytes.Buffer
buf.WriteString("Pairs(")
for i := range p {
fmt.Fprintf(&buf, "%d/%d", p[i].ID, p[i].Count)
fmt.Fprintf(&buf, "%d/%d", p[i].Key, p[i].Count)
if i < len(p)-1 {
buf.WriteString(", ")
}
@ -503,82 +276,22 @@ func (p Pairs) String() string {
return buf.String()
}
// PairsField is a Pairs object with its associated field.
type PairsField struct {
Pairs []Pair
Field string
func encodePairs(a Pairs) []*internal.Pair {
other := make([]*internal.Pair, len(a))
for i := range a {
other[i] = encodePair(a[i])
}
return other
}
func (p *PairsField) Clone() (r *PairsField) {
r = &PairsField{
Pairs: make([]Pair, len(p.Pairs)),
Field: p.Field,
func decodePairs(a []*internal.Pair) []Pair {
other := make([]Pair, len(a))
for i := range a {
other[i] = decodePair(a[i])
}
copy(r.Pairs, p.Pairs)
return
return other
}
// ToTable implements the ToTabler interface.
func (p *PairsField) ToTable() (*pb.TableResponse, error) {
return pb.RowsToTable(p, len(p.Pairs))
}
// ToRows implements the ToRowser interface.
func (p *PairsField) ToRows(callback func(*pb.RowResponse) error) error {
// Determine if the ID has string keys.
var stringKeys bool
if len(p.Pairs) > 0 {
if p.Pairs[0].Key != "" {
stringKeys = true
}
}
dtype := "uint64"
if stringKeys {
dtype = "string"
}
ci := []*pb.ColumnInfo{
{Name: p.Field, Datatype: dtype},
{Name: "count", Datatype: "uint64"},
}
for _, pair := range p.Pairs {
if stringKeys {
if err := callback(&pb.RowResponse{
Headers: ci,
Columns: []*pb.ColumnResponse{
{ColumnVal: &pb.ColumnResponse_StringVal{StringVal: pair.Key}},
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: uint64(pair.Count)}},
}}); err != nil {
return errors.Wrap(err, "calling callback")
}
} else {
if err := callback(&pb.RowResponse{
Headers: ci,
Columns: []*pb.ColumnResponse{
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: uint64(pair.ID)}},
{ColumnVal: &pb.ColumnResponse_Uint64Val{Uint64Val: uint64(pair.Count)}},
}}); err != nil {
return errors.Wrap(err, "calling callback")
}
}
ci = nil //only send on the first
}
return nil
}
// MarshalJSON marshals PairsField into a JSON-encoded byte slice,
// excluding `Field`.
func (p PairsField) MarshalJSON() ([]byte, error) {
return json.Marshal(p.Pairs)
}
// int64Slice represents a sortable slice of int64 numbers.
type int64Slice []int64
func (p int64Slice) Len() int { return len(p) }
func (p int64Slice) Less(i, j int) bool { return p[i] < p[j] }
func (p int64Slice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
// uint64Slice represents a sortable slice of uint64 numbers.
type uint64Slice []uint64
@ -586,23 +299,31 @@ func (p uint64Slice) Swap(i, j int) { p[i], p[j] = p[j], p[i] }
func (p uint64Slice) Len() int { return len(p) }
func (p uint64Slice) Less(i, j int) bool { return p[i] < p[j] }
// nopCache represents a no-op Cache implementation.
type nopCache struct{}
// merge combines p and other to a unique sorted set of values.
// p and other must both have unique sets and be sorted.
func (p uint64Slice) merge(other []uint64) []uint64 {
ret := make([]uint64, 0, len(p))
// Ensure NopCache implements Cache.
var globalNopCache cache = nopCache{}
i, j := 0, 0
for i < len(p) && j < len(other) {
a, b := p[i], other[j]
if a == b {
ret = append(ret, a)
i, j = i+1, j+1
} else if a < b {
ret = append(ret, a)
i++
} else {
ret = append(ret, b)
j++
}
}
func (c nopCache) Add(uint64, uint64) {}
func (c nopCache) BulkAdd(uint64, uint64) {}
func (c nopCache) Get(uint64) uint64 { return 0 }
func (c nopCache) IDs() []uint64 { return []uint64{} }
if i < len(p) {
ret = append(ret, p[i:]...)
} else if j < len(other) {
ret = append(ret, other[j:]...)
}
func (c nopCache) Invalidate() {}
func (c nopCache) Len() int { return 0 }
func (c nopCache) Recalculate() {}
func (c nopCache) Clear() {}
func (c nopCache) Top() []bitmapPair {
return []bitmapPair{}
return ret
}

View file

@ -1,85 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa_test
import (
"reflect"
"testing"
pilosa "github.com/featurebasedb/featurebase/v3"
)
// Ensure cache stays constrained to its configured size.
func TestCache_Rank_Size(t *testing.T) {
cacheSize := uint32(3)
cache := pilosa.NewRankCache(cacheSize)
for i := 1; i < int(2*cacheSize); i++ {
cache.Add(uint64(i), 3)
}
cache.Recalculate()
if cache.Len() != int(cacheSize) {
t.Fatalf("unexpected cache Size: %d!=%d expected\n", cache.Len(), cacheSize)
}
}
// Ensure cache entries set below threshold are handled appropriately.
func TestCache_Rank_Threshold(t *testing.T) {
cacheSize := uint32(5)
cache := pilosa.NewRankCache(cacheSize)
for i := 1; i < int(2*cacheSize); i++ {
cache.Add(uint64(i), 3)
}
// Set the cache value for rows 4 and 5 to a number below the threshold
// value (which is 3), and ensure that they gets zeroed out.
cache.Add(4, 1)
cache.BulkAdd(5, 1)
cache.Recalculate()
if cache.Get(4) != 0 {
t.Fatalf("unexpected cache value after Add: %d!=%d expected\n", cache.Get(4), 0)
}
if cache.Get(5) != 0 {
t.Fatalf("unexpected cache value after BulkAdd: %d!=%d expected\n", cache.Get(5), 0)
}
}
// Test that consecutive writes show up in Top.
// On later writes, the cache skips recalculation to save CPU time.
// This used to mean that the later writes would not show up in Top.
// Now, the cache is flagged as dirty and recalculated during the call to Top.
func TestCache_Rank_Dirty(t *testing.T) {
cacheSize := uint32(5)
cache := pilosa.NewRankCache(cacheSize)
type pair struct{ ID, Count uint64 }
expect := []pair{
{5, 2},
{4, 1},
}
for _, v := range expect {
cache.Add(v.ID, v.Count)
}
var got []pair //nolint:prealloc
for _, p := range cache.Top() {
got = append(got, pair(p))
}
if !reflect.DeepEqual(expect, got) {
t.Fatalf("wrote %v but got %v", expect, got)
}
}
func TestCache_Rank_BulkAdd(t *testing.T) {
const cacheSize = 10
cache := pilosa.NewRankCache(uint32(cacheSize))
for i := uint64(0); i < 1000; i++ {
cache.BulkAdd(i, i)
if n := cache.Len(); n > cacheSize*2 {
t.Fatalf("entry count exceed 2x cache size: %d", n)
}
}
}

View file

@ -1,233 +0,0 @@
// Copyright 2022 Molecula Corp. (DBA FeatureBase).
// SPDX-License-Identifier: Apache-2.0
package pilosa
import (
"github.com/featurebasedb/featurebase/v3/roaring"
txkey "github.com/featurebasedb/featurebase/v3/short_txkey"
"github.com/featurebasedb/featurebase/v3/vprint"
)
// catcher is useful to report error locations with a
// Stack dump before the complexity
// of the executor_test swallows up
// the location of a PanicOn.
type catcherTx struct {
b Tx
}
func newCatcherTx(b Tx) *catcherTx {
return &catcherTx{b: b}
}
func init() {
// keep golangci-lint happy
_ = newCatcherTx
}
var _ Tx = (*catcherTx)(nil)
func (c *catcherTx) ImportRoaringBits(index, field, view string, shard uint64, rit roaring.RoaringIterator, clear bool, log bool, rowSize uint64) (changed int, rowSet map[uint64]int, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see ImportRoaringBits() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.ImportRoaringBits(index, field, view, shard, rit, clear, log, rowSize)
}
func (c *catcherTx) Rollback() {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Rollback() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
c.b.Rollback()
}
func (c *catcherTx) Commit() error {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Commit() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Commit()
}
func (c *catcherTx) RoaringBitmap(index, field, view string, shard uint64) (*roaring.Bitmap, error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see RoaringBitmap() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.RoaringBitmap(index, field, view, shard)
}
func (c *catcherTx) Container(index, field, view string, shard uint64, key uint64) (ct *roaring.Container, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Container() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Container(index, field, view, shard, key)
}
func (c *catcherTx) PutContainer(index, field, view string, shard uint64, key uint64, rc *roaring.Container) error {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see PutContainer() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.PutContainer(index, field, view, shard, key, rc)
}
func (c *catcherTx) RemoveContainer(index, field, view string, shard uint64, key uint64) error {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see RemoveContainer() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.RemoveContainer(index, field, view, shard, key)
}
func (c *catcherTx) Add(index, field, view string, shard uint64, a ...uint64) (changeCount int, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Add() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Add(index, field, view, shard, a...)
}
func (c *catcherTx) Remove(index, field, view string, shard uint64, a ...uint64) (changeCount int, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Remove() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Remove(index, field, view, shard, a...)
}
func (c *catcherTx) Removed(index, field, view string, shard uint64, a ...uint64) (changed []uint64, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Removed() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Removed(index, field, view, shard, a...)
}
func (c *catcherTx) Contains(index, field, view string, shard uint64, key uint64) (exists bool, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Contains() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Contains(index, field, view, shard, key)
}
func (c *catcherTx) ContainerIterator(index, field, view string, shard uint64, firstRoaringContainerKey uint64) (citer roaring.ContainerIterator, found bool, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see ContainerIterator() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.ContainerIterator(index, field, view, shard, firstRoaringContainerKey)
}
func (c *catcherTx) Count(index, field, view string, shard uint64) (uint64, error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Count() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Count(index, field, view, shard)
}
func (c *catcherTx) Max(index, field, view string, shard uint64) (uint64, error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Max() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Max(index, field, view, shard)
}
func (c *catcherTx) Min(index, field, view string, shard uint64) (uint64, bool, error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see Min() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.Min(index, field, view, shard)
}
func (c *catcherTx) CountRange(index, field, view string, shard uint64, start, end uint64) (n uint64, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see CountRange() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.CountRange(index, field, view, shard, start, end)
}
func (c *catcherTx) OffsetRange(index, field, view string, shard, offset, start, end uint64) (other *roaring.Bitmap, err error) {
defer func() {
if r := recover(); r != nil {
vprint.AlwaysPrintf("see OffsetRange() PanicOn '%v' at '%v'", r, vprint.Stack())
vprint.PanicOn(r)
}
}()
return c.b.OffsetRange(index, field, view, shard, offset, start, end)
}
func (c *catcherTx) Type() string {
return c.b.Type()
}
func (c *catcherTx) ApplyFilter(index, field, view string, shard uint64, ckey uint64, filter roaring.BitmapFilter) (err error) {
return GenericApplyFilter(c, index, field, view, shard, ckey, filter)
}
func (c *catcherTx) ApplyRewriter(index, field, view string, shard uint64, ckey uint64, filter roaring.BitmapRewriter) (err error) {
return c.b.ApplyRewriter(index, field, view, shard, ckey, filter)
}
func (c *catcherTx) GetSortedFieldViewList(idx *Index, shard uint64) (fvs []txkey.FieldView, err error) {
return c.b.GetSortedFieldViewList(idx, shard)
}
func (c *catcherTx) GetFieldSizeBytes(index, field string) (uint64, error) {
return 0, nil
}

View file

@ -1,15 +0,0 @@
.PHONY: test testv test-integration testv-integration
GO=go
test:
$(GO) test ./... -short
testv:
$(GO) test -v ./... -short
test-integration:
$(GO) test . -count 1 -timeout 20m -run TestCLIIntegration/$(RUN)
testv-integration:
$(GO) test -v . -count 1 -timeout 20m -run TestCLIIntegration/$(RUN)

View file

@ -1,8 +0,0 @@
package batch
// Inserter can be implemented by anything which can handle a SQL statement
// representing a write operation. An example is `BULK INSERT`. The Insert()
// method on this interface does not return any results other than an error.
type Inserter interface {
Insert(sql string) error
}

View file

@ -1,215 +0,0 @@
package batch
import (
"encoding/json"
"fmt"
"strings"
"time"
fbbatch "github.com/featurebasedb/featurebase/v3/batch"
"github.com/featurebasedb/featurebase/v3/dax"
"github.com/featurebasedb/featurebase/v3/errors"
"github.com/featurebasedb/featurebase/v3/pql"
)
// Ensure type implements interface.
var _ fbbatch.Batcher = (*sqlBatcher)(nil)
type sqlBatcher struct {
inserter Inserter
fields []*dax.Field
}
func NewSQLBatcher(i Inserter, flds []*dax.Field) *sqlBatcher {
return &sqlBatcher{
inserter: i,
fields: flds,
}
}
func (b *sqlBatcher) NewBatch(cfg fbbatch.Config, tbl *dax.Table, flds []*dax.Field) (fbbatch.RecordBatch, error) {
fields := flds
if b.fields != nil {
fields = b.fields
}
return &sqlBatch{
table: tbl,
fields: fields,
size: cfg.Size,
maxStaleness: cfg.MaxStaleness,
ids: make([]interface{}, 0, cfg.Size),
rows: make([][]interface{}, 0, cfg.Size),
inserter: b.inserter,
}, nil
}
// Ensure type implements interface.
var _ fbbatch.RecordBatch = (*sqlBatch)(nil)
type sqlBatch struct {
table *dax.Table
fields []*dax.Field
size int
ids []interface{}
rows [][]interface{}
// staleTime tracks the time the first record of the batch was inserted
// plus the maxStaleness, in order to raise ErrBatchNowStale if the
// maxStaleness has elapsed
staleTime time.Time
maxStaleness time.Duration
// inserter handles SQL INSERT statements generated for each batch.
inserter Inserter
}
func (b *sqlBatch) Add(rec fbbatch.Row) error {
// Clear rec.Values and rec.Clears upon return.
defer func() {
for i := range rec.Values {
rec.Values[i] = nil
}
for k := range rec.Clears {
delete(rec.Clears, k)
}
}()
if len(b.ids) == cap(b.ids) {
return fbbatch.ErrBatchAlreadyFull
}
if len(rec.Values) != len(b.fields) {
return errors.Errorf("record needs to match up with batch fields, got %d fields and %d record", len(b.fields), len(rec.Values))
}
// Append the ID to b.ids.
b.ids = append(b.ids, rec.ID)
// Convert decimal fields (which come in as int64, along with the scale in
// field) to pql.Decimal.
for i, fld := range b.fields {
switch b.fields[i].Type {
case dax.BaseTypeDecimal:
if val, ok := rec.Values[i].(int64); ok {
rec.Values[i] = pql.NewDecimal(val, fld.Options.Scale)
}
case dax.BaseTypeTimestamp:
if val, ok := rec.Values[i].(int64); ok {
ts := time.Unix(val, 0)
rec.Values[i] = ts.Format(time.RFC3339)
}
}
}
// Append the record to b.rows.
vals := make([]interface{}, 0, len(rec.Values))
vals = append(vals, rec.Values...)
b.rows = append(b.rows, vals)
// Check for batch full or stale.
if len(b.ids) == cap(b.ids) {
return fbbatch.ErrBatchNowFull
}
if b.maxStaleness != time.Duration(0) { // set maxStaleness to 0 to disable staleness checking
if len(b.ids) == 1 {
b.staleTime = time.Now().Add(b.maxStaleness)
} else if time.Now().After(b.staleTime) {
return fbbatch.ErrBatchNowStale
}
}
return nil
}
func (b *sqlBatch) Import() error {
if len(b.rows) == 0 {
return nil
}
// Construct the BULK INSERT statement based on the table and fields.
sql, err := buildBulkInsert(b.table, b.fields, b.ids, b.rows)
if err != nil {
return errors.Wrap(err, "building bulk insert statement")
}
// Reset batch data.
b.reset()
// Submit the SQL statement.
return b.inserter.Insert(sql)
}
func (b *sqlBatch) reset() {
b.ids = b.ids[:0]
b.rows = b.rows[:0]
}
func (b *sqlBatch) Len() int {
return len(b.rows)
}
func (b *sqlBatch) Flush() error {
return nil
}
func buildBulkInsert(tbl *dax.Table, fields []*dax.Field, ids []interface{}, rows [][]interface{}) (string, error) {
// Validation.
if tbl.Name == "" {
return "", errors.New(errors.ErrUncoded, "table name is required")
} else if len(fields) == 0 {
return "", errors.New(errors.ErrUncoded, "at least one field is required")
}
var sb strings.Builder
sb.WriteString(`BULK INSERT INTO `)
sb.WriteString(string(tbl.Name))
sb.WriteString(` (_id,`)
flds := make([]string, 0, len(fields))
maps := make([]string, 0, len(fields))
for i := range fields {
flds = append(flds, string(fields[i].Name))
maps = append(maps, fmt.Sprintf("'$.col_%d' %s", i, fields[i].FullType()))
}
// Fields
sb.WriteString(strings.Join(flds, ","))
// MAP
keyType := dax.BaseTypeID
if tbl.StringKeys() {
keyType = dax.BaseTypeString
}
sb.WriteString(`) MAP ('$._id' `)
sb.WriteString(keyType)
sb.WriteString(`,`)
sb.WriteString(strings.Join(maps, ","))
sb.WriteString(`) FROM x'`)
// Row values.
// m is a map representing a single row to be marshalled and added to the
// bulk insert as one line in the NDJSON payload. We re-use the map for each
// row.
m := make(map[string]interface{})
for i := range rows {
// Write the ID value.
m[string(dax.PrimaryKeyFieldName)] = ids[i]
// Write the rest of the data values.
for col := range rows[i] {
m[fmt.Sprintf("col_%d", col)] = rows[i][col]
}
// Marshal the map to json and add to the sql statement.
if j, err := json.Marshal(m); err != nil {
return "", errors.Wrap(err, "marshalling row to json")
} else {
sb.Write(j)
sb.WriteString("\n")
}
}
// WITH
sb.WriteString(fmt.Sprintf(`' WITH BATCHSIZE %d FORMAT 'NDJSON' INPUT 'STREAM'`, len(rows)))
return sb.String(), nil
}

View file

@ -1,47 +0,0 @@
package batch
import (
"testing"
"github.com/featurebasedb/featurebase/v3/dax"
"github.com/stretchr/testify/assert"
)
func TestBatchSQL(t *testing.T) {
tbl := &dax.Table{
Name: "foo",
}
fields := []*dax.Field{
{
Name: "name",
Type: dax.BaseTypeString,
},
{
Name: "age",
Type: dax.BaseTypeInt,
},
}
ids := []interface{}{
0, 1, 2,
}
rows := [][]interface{}{
{
[]interface{}{"Alice", int64(11)},
},
{
[]interface{}{"Bob", int64(22)},
},
{
[]interface{}{"Carl,Comma", int64(33)},
},
}
s, err := buildBulkInsert(tbl, fields, ids, rows)
assert.NoError(t, err)
exp := `BULK INSERT INTO foo (_id,name,age) MAP ('$._id' id,'$.col_0' string,'$.col_1' int) FROM x'{"_id":0,"col_0":["Alice",11]}
{"_id":1,"col_0":["Bob",22]}
{"_id":2,"col_0":["Carl,Comma",33]}
' WITH BATCHSIZE 3 FORMAT 'NDJSON' INPUT 'STREAM'`
assert.Equal(t, exp, s)
}

View file

@ -1,91 +0,0 @@
package cli
import (
"io"
"strings"
"github.com/featurebasedb/featurebase/v3/errors"
)
// buffer is a query buffer for SQL statements. Note that this is not a query
// buffer as you would find on a database server (buffering query results).
// Rather, this buffers the working SQL statement. The buffer has two
// components: the buffer of query parts making up the working, incomplete SQL
// statement, and the last completed SQL statement submitted to the Queryer.
type buffer struct {
parts []queryPart
lastQuery query
hasBatchFile bool
}
func newBuffer() *buffer {
return &buffer{}
}
// addPart adds the given queryPart to the buffer. If the part is of type
// `partTerminator` (which is generally singified in the CLI by a ";"), the
// buffer will finalize the query and return it. In all other cases, the
// returned query is nil.
func (b *buffer) addPart(part queryPart) (query, error) {
// Check for part type compatibility. For example, multiple batchFile parts
// are not allowed in the same query.
switch part.(type) {
case *partBatchFile:
if b.hasBatchFile {
return nil, errors.Errorf("multiple batch files in one query is not supported")
}
b.hasBatchFile = true
case *partTerminator:
return b.finalize(), nil
}
b.parts = append(b.parts, part)
return nil, nil
}
// finalize copies the contents (queryParts) of buffer to lastQuery and then
// resets the buffer. It returns the query that was finalized.
func (b *buffer) finalize() query {
q := make(query, len(b.parts))
copy(q, b.parts)
b.lastQuery = q
b.reset()
return q
}
// print returns the contents of the buffer as a string. This is generally used
// to visually inspect the state of the buffer (for example, when a user issues
// a `\p` meta-command in the CLI).
func (b *buffer) print() string {
if len(b.parts) > 0 {
return query(b.parts).String()
} else if b.lastQuery != nil {
return b.lastQuery.String() + ";"
}
return "Query buffer is empty."
}
// reset clears the buffer. It returns a message which may optionally be used to
// display to a user.
func (b *buffer) reset() string {
b.parts = b.parts[:0]
b.hasBatchFile = false
return "Query buffer reset (cleared)."
}
func (b *buffer) Reader() io.Reader {
if len(b.parts) > 0 {
return query(b.parts).Reader()
} else if b.lastQuery != nil {
r := b.lastQuery.Reader()
// TODO(tlt): terminating the query here results in a line feed just
// before the semi-colon (for example, when you print out the query
// buffer using `\w [FILE]`). The removal and re-introduction of line
// feeds is kind of a mess.
term := strings.NewReader(";")
return io.MultiReader(r, term)
}
return strings.NewReader("")
}

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