Commit graph

249 commits

Author SHA1 Message Date
Matthew Jaffee
8fe73146c8
Sqldb rip boltdb (#2341)
* serverless sqldb use same env for test config as normal

* rip boltdb implementation of controller backend out

it was replaced by postgres and no longer works properly.

This involved migrating a number of tests which only worked with
boltdb, which exposed several ways in which the postgres
implementation had slightly different behavior from the bolt
one:
1. ordering of results in some cases, and
2. (more importantly) erroring when a record to delete was not
found. The bolt implementation silently ignored it when things to
delete weren't found, so we make some changes to match that behavior.

Also stopped propagating CreatedAt and UpdatedAt from DB tables into
dax types. These were breaking existing tests. Perhaps it would be
better to actually use them, but for now they will only exist at the
DB level.

This change set also moves the insertion of the directive_versions
record out of migrations and into the startup/connection code. Having
this in the migrations was a bit ugly because you couldn't just
truncate all the tables and have everything work from
scratch. Inserting it during startup is fairly innocuous, and will
just continue on if it already exists.

* update directive_version test

I changed the initial value to 0 so that the first version that gets
sent out is 1
2023-03-22 08:54:13 -05:00
Matthew Jaffee
be4f365eaf
Cloud 1358 bolt postgres (#2286)
Switch Serverless from using BoltDB to Postgres as metadata store.

Previously, the controller stored all metadata to BoltDB. This implements SQLDB (currently Postgres flavored) as the backing store for metadata. This will allow us to have multiple instances of the controller running for HA, and to easily inspect and repair the contents of the metadata store.

Unfortunately, it was not straightforward to keep the BoltDB implementation working alongside the SQL one, so it will be removed in a later patch. Once that's done, the SQL implementation should allow for a number of simplifications of the schemar and balancer interfaces.

Database migration is built directly into the application by embedding the migration files and logic from the `soda` command line tool. When connecting to the RDBMS, the app will always attempt to create the necessary database and apply any outstanding migrations.

Integration tests truncate all tables upon start, but *not* at the end, so the state of the database can be inspected after integration tests.

Had to refactor some of the controller's background tasks to make sure they get properly shut down on controller exit.
2023-03-20 09:02:22 -05:00
Travis Turner
aa17b8d725
Enable linter: stylecheck (#2317)
* Enable linter: stylecheck

This enabled the stylecheck linter, but excludes some staticchecks for
now. The following are ignored because they will take a bit of time to
address, but the intention is to address them and remove them from the
exclusion list.

ST1000: at least one file in a package should have a package comment
ST1003: golang naming standards
ST1008: error should be returned as the last argument
ST1016: methods on the same type should have the same receiver name
ST1020: comment on exported function

* Address ST1015

For some reason this failed in CI but not locally. I can't figure out
why that check isn't happening locally. This just moves the switch
statements around so that the `default` is the first (or last) item.

* Adjust error string in test to match case-adjusted error

* Remove TestCloseTimeout
2023-03-14 08:45:18 -05:00
Travis Turner
d2856bfeee
Linters! (#2314)
* Add (commented out) linters that we should introduce

I went through the available linters and added (commented out) the ones
I think we should work on in the near term. In other words, fix them,
then uncomment them so they are enabled in CI.

* linter: errchkjson

* linter: ineffassign

* linter: gosimple

* linter: errname
2023-03-10 15:13:15 -06:00
Travis Turner
eb6c6e3105
Add kafka support to CLI (fbsql) (#2278)
* Add kafka support to CLI (fbsql)

This commit adds the ability to provide a `--kafka-config` command line
argument referncing a toml file to configure kafka.

* Move "Molecula Consumer" message to the logger; hide it in basic mode

* Fold decimal(scale) into kafka.source-type

* Build fbsql with cgo in docker for CI

* Re-organize the fbsql kafka config and setup.

Allow field config to use the table schema if no fields provided.

* Display timestamp fields with format RFC3339Nano

* remove kafkaRunner (no longer used)

* Fix cli/batch test (and make sure it's not excluded from CI)

The logic in our Makefile was exluding from tests any package with
`/batch` in the package name. This excluded `/cli/batch`, which is not
good.

This commit changes the exclusion logic to include the `/v3` portion of
the package name, so `/v3/batch`.

* Rename Basic() to SetBasic()
2023-03-07 08:18:22 -06:00
Seebs
f3abd11884 don't use things that instantly exit in a code path tests hit
The testing package is full of subtle magic, and one of the most
subtle is this: t.Logf, etcetera, all write to a buffer which is
then displayed after the test is run. Which means that, if you
exit, the buffer is never displayed. This means that, if a test
case can fail in a way that causes an instant exit, you don't
hit defers, you don't get your log messages, you just get a mysterious
exit of the process.

We have two cases where backup commands were calling log.Fatal
instead of returning an error. The error in question is displayed
correctly and informatively if returned, so we return it.

We also have one case where we were using os.Exit to avoid a
deadlock. Instead, we make the thing that would deadlock
conditional on the test not having failed. In the event that
the test fails, we now print our failure message correctly,
then also report an unclosed cluster. That's fine.
2023-03-06 13:12:22 -06:00
pokeeffe-molecula
11e6d2d9a5 this now prints a message 2023-03-01 21:43:53 -08:00
Vengata Krishnan
6a3c47dbe1
fb-2013 removing sql feature flag entirely. (#2283)
Make SQL endpoint always available.
2023-03-01 15:12:04 -05:00
Seebs
70f92bc038 actually yield checksums to caller
While fixing a bug that log messages were ending up
in the output buffer for backups, we fixed up a bunch of
things to do with log messages and output for various
commands.

Due to a subtle oversight, this means that since we did
that, executor_test's `chkSumCluster` has been dutifully
printing `hash:blahblahblah` to os.Stdout, and returning
an empty string.

This also, indirectly, fixes a very strange behavior
we've had ever since then, which is that a lot of test
output silently disappears. The reason is probably,
although I haven't found the right code path, that we
were ending up closing os.Stdout.
2023-03-01 12:48:00 -06:00
tgruben
dbea305638
add a batch size to limit upload payloads (#2275) 2023-02-24 12:30:57 -06:00
tgruben
c294bc70dc
limit memory for backuptar/restoretar (#2270) 2023-02-23 18:35:52 -06:00
Lory Cloutier
d0e4012025
Fb 1975 (#2254)
* Store version-check file in the configured data-directory

This also fixes what I think is a bug.
It also un-exports everything.

I have questions.

* Version checking: clean up code, add server flags
FB-1975
Cleaned up version checking, removed a race condition, and added error checking.
Added server flags for check-in endpoint and UUID storage file.
Incorporates Travis's changes to store UUID file in data directory
and unexport most of verchk.go.

---------

Co-authored-by: Travis Turner <travis@molecula.com>
Co-authored-by: seebs <seebs@molecula.com>
2023-02-17 13:50:45 -06:00
Travis Turner
393721c0ce
Add viper (for env variable) support to CLI (#2251)
* Add viper (for env variable) support to CLI

* Move the "featurebase cli" sub-command to its own "fbsql" command

I don't know if this is the final name, but putting it here as a
placeholder for now.

* Handle single `--command` flags.

This also adds a printer interface so we can opt NOT to print setup
information in non-interactive mode.

* Add support for multiple `--command` flags in the same call

* Add support for multiple `--file` flags

* Move members related to Config into a separate struct

* Make sure non-interactive mode can connect to a database

* comment fix

* support control-C on readline

* Prevent connection message from printing in non-interactive mode

* Return errors (instead of printing them) in non-interactive mode
2023-02-16 20:41:39 -06:00
tgruben
4172976e6a
Manual buffer management in restore-tar (#2249)
* manual buffer management
reuse buffer on backuptar as well
test coverage for backuptar
2023-02-16 14:57:00 -06:00
Travis Turner
20429bb9dc
Remove MDS and replace it with Controller (#2219)
* Remove MDS and replace it with Controller

This commit removes the MDS layer (and package) and shifts Controller
package into its place.

* add pprof/fgprof to serverless http router

---------

Co-authored-by: Matthew Jaffee <jaffee@pilosa.com>
2023-01-30 16:54:12 -06:00
tgruben
4e45f19ca0
parquet-info command to browse parquet files (#2230)
* parquet-info command to browse parquet files

* null support in parquet
2023-01-26 12:55:54 -06:00
Matthew Jaffee
8f1f3c6d06
Fix pre sort cmd (#2222)
* make ndjson pre_sort parallel, fix several bugs, test

* remove json tags (not needed), rename pre_sort -> presort
2023-01-25 11:01:58 -06:00
Travis Turner
468461fbcf
Add Drop Database and Drop Table support (#2208)
* Support Drop Table in serverless (include Snapshotter, Writelogger)

* Finish Database methods

Things like:
- `Databases`
- `DatabaseByID`
- `DatabaseByName`
- `DropDatabase`

* Change Poller to use NodeService instead of its own map

Instead of the Poller maintaining its own map of Addresses to poll, this
commit changes the Poller to use the NodeService interface to get all
known nodes from the Controller.

The next commit needs to:
Next, the logic in the boltdb NodeService implementation was moved to
the boltdb Balancer implementation. That way, the Balancer can be the
source of truth for all things nodes/workers/jobs.

* Move NodeService from Controller to Balancer

This commit moves the implementation of the NodeService into the
Balancer, and aligns `Balancer.AddWorker` with `NodeService.CreateNode`
so that they stay in sync. (Same for `Balancer.RemoveWorker` and
`NodeService.DeleteNode`).

* fix import of private repo

* Fix go vet issues

* Fix bug in DeregisterNode

We need to remove the node from the NodeService even if it's not
assigned to a database. The logic had a bug in it.

This also adds some no-op implementations for SnapshotService and
WriteloggerService. If a directory was not configured for that, then the
computer node would panic on trying to read from the Snapshotter upon
receiving a Directive.

* queryer response content-type: json

* Add support for NULL to WriteloggerDir and SnapshotterDir configs

This commit changes the way WriteLoggerDir and SnapshotterDir are
handled.
If value is empty `""`, an error will be returned on computer startup.
If value is `"NULL"`, a no-op implementation of the service will be
used. This would be for a case that wanted to run serverless on-prem
with no durable storage.
Finally, any other value will be used as the directory to use.

Some things which aren't considered here and may result in unexpected
behavior:
- a value with spaces `" "`
- any "null" which is not "NULL"... like lowercase.

* Finish the DropTable test

* Change "disable service" value to case-insensitive "off"

This commit also removes an unnecessary sleep in the tests.

* Fix docker-compose variables for IDK test

Co-authored-by: Matthew Jaffee <jaffee@pilosa.com>
2023-01-23 19:59:47 -06:00
Matthew Jaffee
6d4c1d9db1
Sup 294 pre sort command (#2209)
* first cut at pre-sort command that works on ndjson

* finish pre_sort command for CSV and JSON and add test

* try fixing golangci-lint

* remove some dumb lint checks

* more linter disabling

* take .golangci.yml from previous repo

* go fmt (facepalm)

* remove ioutil to fix lint
2023-01-23 12:26:38 -06:00
Travis Turner
f6a767befb Refactor CLI (#2417)
This commit moves the cli out of the `ctl` package and into its own
`cli` package. It also adds some basic tests for expected input.

Finally, it fixes a bug which was causing intentional line feeds to be
ignored, which was a problem with the BULK INSERT command.

(cherry picked from commit cf72bfa16f)
2023-01-19 22:10:15 +00:00
tgruben
adbad90fe1 string support for dataframe (#2405)
* String support for arrow

(cherry picked from commit 4cd3cb02a2)
2023-01-19 21:51:16 +00:00
Joe Friedrich
475bf58465 resolve go vet errors related to redeclares 2023-01-12 20:32:49 +00:00
Julio Martinez
c23608557b Add dd tracer and associated config options (#2403)
Co-authored-by: Julio <julio.martinez@featurebase.com>
(cherry picked from commit 581a4d19a4)
2023-01-12 00:49:58 +00:00
Joe Friedrich
7acf3265ca fix import paths and import cycles 2023-01-12 00:31:14 +00:00
Joe Friedrich
d22bd9430f fix import paths 2023-01-11 18:59:24 +00:00
Travis Turner
69a174412d Small adjustments to support the Serverless cloud merge (#2385)
This just changes a make target and the CLI setup. Nothing in
featurebase is actually affected.

(cherry picked from commit 33bc69ccc6)
2023-01-10 23:27:10 +00:00
Matthew Jaffee
0f67a0c432 first cut at automatic snapshotting
- had to make sure we don't snapshot until directive is fully applied
on a computer... otherwise there's races between loading the files and
truncating the write log.

- added a dirty bit to resources and a bool return to incrementing the
write log... don't snapshot if it returns false because that means
there's been no writes. (but make sure you close the storage transaction!)

- added the actually snapshotting routine which just fires every
<timeout> and serially snapshots everything.

- tweaked some logging

- added ability to get all tables in an org/db or literally all. I
think I just needed the "literally all", but it was natural to allow
it to be scoped to org or DB as well.

(cherry picked from commit b8b08bc9eb)
2023-01-10 23:26:29 +00:00
Matthew Jaffee
a9b248bb29 "fix" backup tar test by just comparing lengths not byte for byte
(cherry picked from commit 1e2e698225)
2023-01-10 23:25:08 +00:00
tgruben
24372a9405 [FB-1822] Change dataframe disk format to Arrow from parquet (#2376)
* change default backend to arrow file format instead of parquet

(cherry picked from commit 6d96a1474e)
2023-01-10 23:22:58 +00:00
Lory Cloutier
748fdc3741 Prevent file corruption when writing tar backup to stdout (#2344)
* Prevent file corruption when writing tar backup to stdout

FB-1794

Tar backups written to stdout were coming out corrupt. This turned
out to be due to log messages getting written to stdout and ending
up in the tar file. We now check to see if the tar file and the log
are both going to stdout, and if they are, send the logs to stderr
instead.

Testing did not have any kind of consistency or validity check. We
now compare a tar file sent to a file and a tar file sent to stdout
to make sure they're the same. This does not guarantee correctness
but does at least catch this form of corruption.

* trying different index name

Co-authored-by: tgruben <tgruben@gmail.com>
Co-authored-by: Todd Gruben <todd@molecula.com>
(cherry picked from commit a8996a149d)
2023-01-10 23:20:15 +00:00
tgruben
a2e14df15c Fb 1874 dataframe-csv-loader featurebase subcommand (#2341)
Embeded dataframe-csv-loader command as featurebase subservice

(cherry picked from commit f2a13c8bde)
2023-01-10 23:20:15 +00:00
Fletcher Haynes
5c39a49285 Sync from private repo to commit 12d608c80d 2022-12-12 09:01:20 -08:00
Travis Turner
a44b622aa0 Introduce ServiceManager and Refactor DAX Integration tests (#2320)
* Introduce ServiceManager and Refactor DAX Integration tests

The ServiceManager provides an interface with which to manage
featurebase (dax) services (mds, queryer, computer). It replaces the
confusing interface implementations in /dax/server/server.go (which
optionally used pointers to in-process objects to satisfy an interface)
with (for now) http implementations. The thought is that even if we're
running all services in-process, we should communicate between services
over http in order to mirror what we would do in a production
environment where the services are running on different nodes.

This batch of commits does quit a lot, most of which is captured here:

- Added `path` support to `dax.Address`. Address is now a string of the form [scheme]://[host]:[port]/[path].
- Added `Holder.directiveApplied` to determine (in tests) if the computer has completed applying the latest directive. This is somewhat temporary until we improve the mds-to-computer logic.
- Removed the "service prefix" code which was prepending client URL paths with the prefix. Instead, the serviceType (mds, queryer, computer[n] is now part of `dax.Address`).
- Removed, from the dax config, the top level `StorageMethod` and `StorageDSN` and now just have `MDS.Config.DataDir`.
- Added `Computer.Config.N` to specify the number of computers to run in-process.
- Moved the `pilosa.MDS` interface to `computer.Registrar`. This is an example of getting the interfaces defined in the right packages.
- Added `SnapshotTable()` method to the mds client (to align with its API).
- Changed `Balancer.AddJob()` to `Balancer.AddJobs()` to support, for example, adding 256 partitions in a single call. Refactored some of the naive Balancer to account for this.
- Added a `Seed` to the top-level config. It's not really useful because of package `crypto/rand`.
- Added an in-memory implementation of the DisCo interface and disabled etcd in a computer service.
- Create sepearte data-dirs for each in-process computer.
- Disabled grpc in dax.
- Modified the sql3 test definition format to support multiple insert steps and separate query results (to align with those steps).

* Changes necessary to get multiple computer instance running in-process

For now the config looks like this:

```
[computer]
run = true
n = 4
```

but we can probably just change that to be something like:

```
[computer]
run = 4
```

*Issues found running multiple "computers" in-process*
- grpc was trying to bind on the same port
  - changed GRPCListener from `*net.TCPListener` to `net.Listener`
  - created a nopListener and set to that for now (i.e. disabled grpc)
- etcd was starting more than once
  - changed dax to use in-memory implementations of the disco interfaces (i.e. stop using etcd)
- IDAllocator (which uses boltdb) was trying to open the `idalloc.db` file more than once
  - realized we have to set separate data-dirs for each holder. that fixed it.

* Port dax integration tests to ManagedCommand

* Modify Balancer-related methods like AddJob to AddJobs

There were (and still are) a lot of places where we were adding on job
at a time, even when we had a long list of jobs to add. This resulted in
every job add (for example adding 1 of 256 shards) taking ~40ms, or over
10s to create a keyed table. One reason was because each job add was
making multiple boltdb transactions.

* Port over more dax integration test stuff

* Add DirectiveApplied to signify that snapshot/writes have loaded.

We use this in tests to avoid using sleeps.
This should be considered temporary; we're going to need a more robust
solution for determining when a computer node is ready to serve complete
data.

* Finish porting dax integration tests

* Improve godocs

* Remove docker-based DAX integration tests.

* go mod tidy

* Move test/managed.go to avoid package conflicts

* Modify IDK integration tests to work with ServiceManager changes

This is really just computer -> computer0
And the MDS DataDir config change.

* cleanup found during review

* echo $CI_COMMIT_REF_SLUG in CI

* remove docker image arg, use build instead

(cherry picked from commit 2843f218bc)
2022-12-12 09:01:20 -08:00
Lory Cloutier
b6ae088f24 FB-1766: cleaning up the CmdIO objects passing alternate stdin/
stdout/stderr around

A lot of functions in the cmd and ctl packages were passing these
around and barely using them. Replaced them with a logger for most
functions. Some functions get an io.Writer instead so that their
tests can find the output they're looking for.

More cleanup on fb-1766: reworked the tests that were using io.Pipe
or os.Pipe to check their results so they now use a bytes.Buffer.

Unexported some variables that didn't need to be exported.
Fixed NewConfigCommand to use the provided stderr, not os.Stderr.
Added tests for rbf_dump, rbf_page, and keygen, since those weren't
being tested at all.

Added chksum_test, final cleanup.

(cherry picked from commit f627199acb)
2022-12-12 09:01:20 -08:00
Travis Turner
444d4804ec Fix formatting in CLI results with custom SQLResonse.UnmarshalJSON (#2305)
* Fix formatting in CLI results with custom SQLResonse.UnmarshalJSON

When I started this, it was meant to be a quick fix to address the confusing
result formats we were seeing in the CLI. For example, all large integer values
were displayed in scientifc notation. This is because we were passing the result
types from JSON (in this case, float64) into pretty print. Similarly, `IDSets`
and `StringSets` where being printed using the default go Stringer for the types
[]int64 and []string respectively.

I started by writing a customer UnmarshalJSON() method for the `SQLResponse`
type. Part of this (the part which converts data types based on header types)
was already being used in dax tests, so this just formalizes that logic as part
of the `SQLResponse` type.

Then I realized that the sql3 tests (run against the `sql3` package) were
failing because sql3 is not actually returning the `IDSets` and `StringSets`
types. A future task is to formalize return types, define them, and modify sql3
to return them. Once that is done, we can remove the "typed" switch in the
`SQLResponse` json unmarshaller.

Another significant change is the modification to the `ExprDataType` interface:
```
type ExprDataType interface {
	exprDataType()
	TypeName() string
	TypeDescription() string
	TypeInfo() map[string]interface{}
}
```
I added two more methods in order to distinguish between a type (`DECIMAL`), its
description (`DECIMAL(2)`), and its type info (`"scale": int64(2)`). Currently,
the description can be used as the field definition in a CREATE TABLE statement,
but we may want to re-think that. Also, Decimal is the only type currently using
TypeInfo.

Finally, I tried to consilidate things around `dax.FieldType` instead of
comparing against parser types outside of sql3. We still have some sql3 parser
and planner types lurking about, but we can address those in future commits.

* Add some test coverage

* smoke test expected INT, now int

* minor fixes

* Introduce WireQueryResponse and related types

This also changes dax.FieldType to dax.BaseType.

* Populate WireQueryResponse correctly

Currently this is in the http handler, and in the queryer.

* Convert sql3 and dax tests to expect pilosa.WireQueryField in results

* fix PQL tests in the SQL defs

* Address a few of the skipped sql tests in dax

(cherry picked from commit f4385df2cf)
2022-12-12 09:01:20 -08:00
tgruben
2fc7abd72e Dataframe (#2241)
* Dataframe

(cherry picked from commit 2f1beaf119)
2022-12-12 09:01:20 -08:00
Seebs
f06b187bbd improve coverage in tests
(cherry picked from commit bd2b9ac225)
2022-12-12 09:01:20 -08:00
Seebs
f2d1c3f459 write header before body
This produces an http warning that doesn't make the test fail.

(cherry picked from commit d0ccf8e4e4)
2022-12-12 09:01:20 -08:00
Seebs
1009fa4164 actually honor provided stdin/stdout
the BackupTar and RestoreTar functionality was ignoring provided
readers, which doesn't matter for real usage but breaks tests
by making them dump raw tar binaries to stdout.

(cherry picked from commit 93153a97db)
2022-12-12 09:01:20 -08:00
Seebs
3c05f1ff37 Distinguish between usage errors and other errors
Cobra automatically displays usage messages, and also a gratuitous
"Error: [...]" line in some cases, when any error at all occurs
running a command. To suppress the usage message, you have to set
cmd.SilenceUsage to true. But the code that would do this doesn't
have access to it. To address this, we introduce a category of
"usage error", implemented with stdlib error wrapping (%w) and
use errors.Is to check for it. There's also utility functions
to do this checking automatically, or indeed, to handle wrapping
of the ctl.SomethingCommand and handle running it with a suitable
context and everything.

In fact, several of the places we're checking for usage errors,
we can never actually report one, but we're checking consistently
so that if we want to report usage errors, we can.

For instance, server.Start and (dax)server.Start don't ever
return usage errors, right now, but we're checking their responses
anyway.

(cherry picked from commit c681642734)
2022-12-12 09:01:20 -08:00
Travis
04aa8b18fc Add DAX - full list of squashed commits below
In this commit, the Directive is mocked; it doesn't actually reach out
to a controller.

Limits key translation to only those partitions (per index) specified in
the Directive. Attempting to create or find a key (or ID) for a
partition which is not handled by this node will result in an error;
translation requests are no longer forwarded to other nodes.

Limits import into only those shards specified, per index, by the
Directive. Attempting to import into a shard which is not handled by
this node will result in an error.

Stub out /directive endpoint

The `applyDirective()` method still needs to be implemented.

Update mds references to use the new /mds/types structure

In mds, we moved the shared types to mds/types. FeatureBase needs to
reference those instead.

This also bumps the mds version in go.mod.

Implement the Add/Remove Index part of Holder.ApplyDirective()

This adds functionality to `Holder.ApplyDirective()` which adds or
removes indexes (tables) based on those provided in the Directive. Still
to be implemented here: shards and partitions.

WIP: remove client from Batch

Move Batch into its own package: batch

Also, in order to avoid import loops, this introduces packages:
/batch/types
/client/types

Reorganize the Importer-related code

Moved the Importer interface to package: batch
Move the "pilosa client" implementation of the Importer interface to
package: client

Modify batch.NewBatch to take an Importer (not client)

This commit modifies the batch.NewBatch() function to use a functinal
option on Batch to inject an Importer into the Batch. Prior to this,
NewBatch() took a pointer to a client, which was a little too
restrictive. Now, MDS can implement an Importer which uses information
from MDS to determine to which node(s) the import calls should be directed.

Add client.SetAuthToken() method to satisfy SchemaManager interface

Update ApplyDirective logic to include fields.

This needs more work, but it was enough to get a basic test passing.

Move Transaction type into /types package.

Add interface check on batch.Importer no-op implementation

Updated ApplyDirective to create all currently support Field types

There are still the following TODOs:
- [ ] impolement field options (ex: decimal scale, int min/max, etc).
- [ ] `time` fields

Added support for Decimal.Scale in ApplyDirective

Update mds dependency

Add /health endpoint

Update to use dax (dax/mds) instead of mds.

After moving the mds repository into the dax repository as a
sub-package, this commit changes everything in FeatureBase to use the
dax repo instead of the now abandoned mds repo.

Introduce and implment the WriteLogger interfaces.

This adds both a `WriteLogReader` and `WriteLogWriter` interface. They
are both implemented by the implementation: `fileWriteLogger`. The
`fileWriteLogger` uses the dax/writelogger API to append log messages to
files on disk.

Add WriteLogWriter.ImportRoaring method to interface

This commit adds the `ImportRoaring` method to the `WriteLogWriter`
interface. Still to implement are the `Import` and `ImportValue`
methods.

Reorganize the ApplyDirective code

The primary goal was to cache the incoming Directive on the Holder prior
to applying all of the changes in the directive (i.e. loading data from
the WriteLogger) because applying those changes often validated against
the accepted state of the node.

Implement all of the WriteLogger read/write methods

Implement the HTTP WriteLogger implementation

WIP: Introduce shard.Version. Implement snapshotter.

Add HTTP Snapshotter implementation

This also recofigures server to use the HTTPSnapshotter instead of the
FileSnapshotter.

Implement snapshotter: TableKeys

Implement snapshotter: FieldKeys

Dependency dance

last of the dependency dance

Add support for prototype

This adds the Makefile targets to build the docker container and push it
to ECR.

SQL3 changes which break with dax changes

Missed TODO: implement FieldVersion version to WriteLogger

Address bug causing missing TranslateStores to error

Originally, we tried to limit the TranslateStores which get allocated to
only those for which the node is responsible. This works when adding a
new table. But if a table already exists, there's no logic to start
missing TranslateStores.

This reverts back to the old FeatureBase logic which brutishly allocates
a TranslateStore for every partition, even if one is not needed.

We need to address this by allowing the ApplyDirective logic to
initialize TranslateStores when they don't yet exist.

Move the ImportRoaringShardRequest type to the types package

Since the ImportRoaringShardRequest object is part of the Importer
interface, we need to move it to a non-root (i.e. pilosa) package. All
the other interface types are either concrete types or part of a
sub-package (such as roaring). We do this to prevent an implementer of
the interface from having to import the entire pilosa package and risk
circular imports.

buncha changes to support latest dax stuff

Move dax related types to /dax sub-package

This commit moves all the common "dax" types into the /dax sub-package.
The idea is to ensure that featurebase does not import dax at all.
It's ok if dax imports featurebase.
In the future, we might need to split the dax sub-package (common data
types used by muliple molecula data-plan services) into it's own repo.

Add type: dax.Schema

This isn't currently being used; I started to use is as a replacement
for pilosa_client.Schema, but then deferred that. But we'll need to do
it eventually, so it doesn't hurt to have this type in place.

Export RowIDs.Merge() method for use in orchestrator.

Add CreateSQL method to dax.Table type

The CreateSQL() method will return the "CREATE TABLE" statement required
to create the dax.Table.

Comment out confusing writelogger log message.

We need to revisit this, but for now, this log message is confusing.

Also, rename daxSharder to versionStore.

Remove hard-coded AWS account

Implement more FieldOptions such as Epoch

Some of the FieldOption logic was stubbed out in the dax package. This
commit fills that out more; specifically, it adds the
dax.Field.Options.Epoch parameter.

export stuff needed for TopK in orchestrator

export ValCount stuff to implement Percentile in orchestrator

export more stuff to support less code in orchestrator, shared objs

Port dax repo over to featurebase/dax (run all as sub-services)

This commit does ALOT. Sorry.
It introduces a `featurebase dax` sub-command which can be configured to
run the various dax services as sub-services within the same process, or
individually as the lone service in process.

It also changes all the URL paths to be prefixed with the service name.
So for example, instead of calling localhost:8080/status, you would now
call localhost:8080/featurebase/status.

Also, note that all services provide a /health endpoint to confirm they
are running in process.

Clean up integration tests. Remove PILOSA_ config prefix.

Remove duplicate clients (mistake from porting dax to featurebase)

Rename sub-service "featurebase" to "computer"

In the places where we have hard-coded the sub-service name into a URI
path, I've tried to tag the line with a comment containing:
`// #SERVICEPATHPREFIX`

Update copilot manifest files to reference "computer"

Port dax/README.md from dax repository

Separate (toml) Queryer Config from Injections

We needed to separate the toml config from the configuration required to
inject sub-services into the Queryer. I'm not sure this is the best
solution, but it's *a* solution. So here we are.

Clean up (i.e. remove) the queryer "implementations" package

Remove old test file

Run WriteLogger and Snapshotter as local sub-services.

Prior to this commit, the writelogger and snapshotter services only
worked when run as separate services. This allows them to be run in the
same process as all the other dax services.

There is still some naming issues that we should address, but it's
functional for now.

Clean up (i.e. organize) the intra-service interfaces.

Implement alpha Director for local messages from MDS to Computer

Prior to this commit, messages from MDS to the computer service were
still going over http. This commit introduces an interface
implementation which registers the local computer command, and use that
command's API to directly reference methods used by the Director.

Clean up a few more interface names

Add Queryer OpenAPI document.

Update copilot manifests to reflect latest changes

Add OpenAPI documents for WriteLogger and Snapshotter

Add OpenAPI document for MDS service

Add OpenAPI document for Computer service

Consolidate errors to use fb/errors package.

This commit is a first pass at trying to ensure that all of the DAX code
uses:
"github.com/molecula/featurebase/v3/errors"

This package is a wrapper for "github.com/pkg/errors", so going forward
we want to avoid importing that package.

The only method which isn't backward-compatible is `New()`; the
New() method in the featurebase/errors package takes an errors.Code. If
this becomes a problem, we could change this by reverting New() and then
introducing something like NewCoded(). But for now I think it might
actually discourage someone from just creating a New() error without
thinking about how it should be coded.

Introduce VersionStore interface

Move the existing VersionStore code to the `inmem` package as the
in-memory implementation of the new dax.VersionStore interface.

Introduce NodeService interface

With this, the Controller can maintain a registry of nodes by using this
NodeService interface as opposed to an in-memory map of nodes on the
Controller struct.

This also adds an inmem implementation of the NodeService interface.

Introduce controller.Balancer interface

This moves the existing balancer package to controller/naive package.
The idea is to allow us to add a different Balancer implementation in
the future.

Introduce DirectiveVersion interface

This commit also includes *A LOT* of refactoring to use dax.Worker and
dax.Job types everywhere instead of strings.

Introduce Schemar interface

The previous `Schemar` struct was moved to the `schemar/inmem` package,
and `Schemar` is now an interface implemented by that inmem package.

Remove unused type `nUnit`

Add boltdb implementation of VersionStore interface.

This removed the previous sqlite implementation; we decided not to use
sqlite for now (as a basic, local disk implementation) because it
requires CGO.

--------------------------------------------
No longer applicable:

Add sqlite implementation of VersionStore interface.

This commit implements the VersionStore interface using sqlite. Sqlite
requires CGO, so this may not be something we want to include, but it's
implemented here to get a feel for how an external implementation might
be used; the next step will be to determine how the user configured
FeatureBase to run using sqlite as a backing store for services like
MDS.

Add boltdb implementation of NodeService and DirectiveVersion interfaces.

Add boltdb implementation of naive Balancer interfaces.

This includes the two interfaces defined in `naive/balancer.go`:
- WorkerJobService
- FreeJobService

Add boltdb implementation of Schemar interface.

clean up a linter issue

Thread context.Context through all the interfaces.

Some of the interface implementations are going to use context, so we
need to make that part of the interface. The boltdb implementations, for
example, take a context. This is probably so we can do things like
cancel or timeout operations.

Update interfaces to return error; remove `panic(err)` everywhere.

Down-rev grpc version to 1.38.0

Later versions (after 1.42.0?) cause MustRunCluster.Close() in tests to
deadlock.

This commit also adds an `isComputeNode` feature flag around some of the
write log and shard/partition check functionality so that it doesn't run
under normal conditions (this is excercised by running the sql3 tests
for example).

Add MDS_Persistence test to cover meta data persistence

This adds a basic test which configures the MDS container to use boltdb
as its persistence storage, saved on a docker volume. Then, the mds
container is stopped/replaced, and we confirm that the data stored on
the volume is availble to the new MDS container.

Fix a few things after rebase with sql-experiment branch

The lastest version of sql-experiment contains a fairly significan
refactor of the way query iteration works. This commit adjusts for those
changes.

pull dax IDK changes in to FB IDK (#2177)

* pull dax IDK changes in to FB IDK

* Move docker-related IDK build stuff to featurebase root

Building the docker image required the root level go.mod and vendor
directory. This change moves the make targets to the root level
Makefile, and the Dockerfiles now copy the root level vendor directory
(and everything else in the root for that matter).

* Fix batch- and client-related tests

* InitializePoller on MDS restart/replacement

Prior to this change, if MDS was restarted, its internal poller (which
maintains an in-memory list of nodes to poll) is empty. This is bad,
because it doesn't know about nodes that it should be polling.

This change fixes that. Upon MDS startup, it intializes the poller with
the list of nodes that MDS keeps in persistent storage (currently:
boltdb).

* Add EFS volume to MDS Copilot manifest

This allows us to use MDS's persistent storage (via boltdb) in the
Copilot demo by saving metadata in a boltdb file on EFS.

* Thread logger.Logger through all dax components

* Revert some of the breaking changes from DAX development.

When we first started prototyping DAX, we made changes to the
featurebase core code which would have broken the existing featurebase
functionality. This commit reverts some of those changes. Anywhere that
we need to modify core featurebase functionilty, we put it behind some
kind of feature flag. This flag is typically determined by whether the
running node is a "compute" node (i.e. DAX.COMPUTER.RUN = true).

Co-authored-by: Travis Turner <travis@molecula.com>

add packaging for DAX

need cgo for datagen build

bind to 0.0.0.0, pass GOOS and GOARCH explicitly

not sure if the explicit GOOS/GOARCH is actually necessary...

Get INSERT INTO (aka ingest) working through SQL3

This commit does a few things which I'll try do describe here.

- Introduces a Qctx interface. The existing Qcx is an implementation of
  this interface, and can be used exactly how it has been. But this
  allows us to abstract away the notion of Qcx in the Queryer (which is
  handling SQL3) until we're ready to address that. As an example, the
  Qcx has a notion of a featurebase Holder, but that doesn't make sense
  when we're at the Queryer layer. For now, the Qctx used in the Queryer
  is a no-op.

- Adds a ComputeAPI interface implementation for the Queryer. This is
  effectively the Import() and ImportValues() methods used for ingest.
  The logic here handles the incoming ImportRequest by first doing any
  necessary column and row translation for the entire request, then it
  splits the records by shard, and generates a new ImportRequest per
  shard with only the shard-appropriate records.

- Changes the mds.Importer to take an MDS interface implementation
  (which can be an mds client) instead of an mdsAddress. This allows us
  to use a localy MDS implementation rather than assuming we need a
  client to make calls over a network.

Add queryer.Importer interface to handle ingest via SQL (#2203)

* Add queryer.Importer interface to handle ingest via SQL

This is meant to support ingest through SQL when the queryer and the
compute services are running in the same process, or when they are on
seperate processes and need to talk via http client.

* remove datagen from RPM

was originally added as a convenience to generate test data, but is
unused and annoying because datagen doesn't easily cross-compile due
to cgo

* add marshalUnmarshal to controller to avoid passing pointers

passing pointers across API boundaries can cause unpredictable things
in local vs remote configurations.

Co-authored-by: Matthew Jaffee <jaffee@pilosa.com>

"fix" a few issues with wrong default partition numbers

these still need to be properly fixed and actually get the correct
data from MDS

go mod tidy

Introduce TableQualifier (OrganizationID/DatabaseID) (#2220)

* add check in ApplyDirective that version is increasing

fix TestAPIDirective to make version always increasing

* fix docker image build and break out dax test in CI

We have to run the DAX integration tests separately as they call out
to Docker, and so it isn't easy to run them in a Docker container as
the other tests do. So we run them directly on the CI runner which has
Docker and Go installed.

We also explicitly exclude these tests from running during the other
tests.

Also my editor was automatically reformatting some comments badly
which is why I added the "data" thing in those two places

* add timeout to poller

* give Poller a default Logger

apparently we can NPE sometimes, seen in CI: https://gitlab.com/molecula/featurebase/-/jobs/3028286364

* bunch of testing fixes, mostly IDK/DAX related

make MDS error if sendDirectives errors, don't just
log. sendDirectives can error if computer nodes disagree about the
validity of a schema (for example), in which case it might need to get
deleted and user notified somehow. very messy, needs more thought.

re-introduce old env prefix to maintain compatibility with master
branch

make self-contained dax container for IDK testing

build IDK images from source (now that all the source is available
since it's in the same repo)

catch errors in DoExtractQuery in idktest.go

fix IDK bug where prefix path was hardcoded in all cases rather than
only when useMDS was true

fix TestBatchTargetMDS... needed to add field options and catch error
when creating table. also needed an _id field

* fix env prefix in tests

* WIP getting tests to pass, wanna see CI

* don't error if we get a zero version directive and we don't have a

directive yet

* cleanup debugging junk

* "fix" future.rename thing, run IDK tests

* Introduce TableQualifier (OrganizationID/DatabaseID)

This commit introduces a lot of new types (in dax/table.go) related to
TableQualifer (which is made up of OrganizationID and DatabaseID), as
well as things like TableID and TableKey.

For the most part, we try to thread a QualifiedTableID through the
entirety of DAX. There are some places (for example in the Balancers,
which are just aware of string keys) which use a string TableKey
(tbl__org__db__tableid).

* Remove some debugging comments

* Add Org/DB support to CLI.

This commit adds support for special commands:

SET
SET ORG acme
SET DB db1
USE db1

* remove ".pulled" from IDK Makefile

I don't think we need it any more as most things can be built
locally. I think it was only there to refresh the FeatureBase images
that were tagged as master, but we don't need to do that any more.

* Change DAX json tags to kebab-case (i.e. hyphenated)

This commit also renames some struct arguments to more accurately
reflect their type: for example, renaming `Table` to `TableKey` when the
type is TableKey.

* Return DAX TableName in SHOW TABLES (instead of Index.Name)

There are cases where SchemaAPI is used to return DAX friendly table
names (as opposed to featurebase index names, which are DAX TableKey).

This is an attempt to do that. With that said, it's not ideal because
anything could call those API methods and expect the other type.

* Fix a bug which wasn't completely dropping a table.

When using boltdb as a backend, DROP TABLE wasn't removing the
reverse-lookup key for the table in boltdb.

* Remove idk/testenv/certs which got accidentally committed.

also update .gitignore to include those.

* Fix IDK ingest tests to be TableQualifier aware.

* Add example Table types to dax/table.com godoc.

* ignore idk.Main fields for flags, upgrade commandeer

* go mod tidy

* Fix DAX integration tests: ingester using wrong ENV VARs

We change from ORGANIZATION_ID to ORG_ID
and from DATABASE_ID to DB_ID

* Clarify things around idk (docker) tests

* Stop running TestKafkaSourceIntegration with t.Parallel()

This test can't be run in parallel as it's currently written. Doing so
allows for interleaving of messages to the same kafka topic between
tests.

I didn't attempt to modify the test so it could be run in parallel. That
could be done, but left for someone more ambitious.

Co-authored-by: Matthew Jaffee <jaffee@pilosa.com>

Require Directive.Version be a non-zero value. (#2227)

Because the directive cached on the holder is not a pointer, its default
version is 0. In order to avoid having to compare against that, we just
require that Directive.Version start at 1.

General, non-invasive code cleanup and comment adjustment.

Move ImportRoaringShardRequest out of the types package

Early on in the DAX development, I moved ImportRoaringShardRequest into
a types package. There must have been some import loop going on, but
since that is not longer the case, it's safe to move this back into the
core featurebase (er... pilosa) package.

Move Transaction struct back into the pilosa package (from types)

Revert some name changes (cli -> client)

Add DAX Handler CloseTimeout

This was implemented in htt_handler.go, but it had been commented out in
the DAX handler. This just uncomments that and finishes the
implementation.

Remove Qcx from queryer.Importer interface

This sets us up to revert the Qctx interface that was initially
introduced to allow us to abstract away the need for a Qcx when calling
the ComputeAPI from a remote service (i.e. the queryer).

Add some go-doc comments and remove unused code.

Move SchemaManager setup from datagen to idk.Main (#2233)

The set for idk.SchemaManager (for dax implementations) was previously
in datagen. This may have been because of some import loop problem
during development, but that's no longer an issue.

The setup for this should be in idk.Main so anything using that can
leverage the MDS-specific SchemaManager setup.

Fix issues around nil TxFactory

First, don't return a nil. Rather return a new *TxFactory (with no
holder).

Second, don't call `f.holder` in the testhook outside of checking if
`f.holder` is nil.

Wrap all bare errors

Make service prefixes constants

Instead of having `"computer"` throughout the code, use instead a
constant: `dax.ServicePrefixComputer`.

MDS skip errors when sending empty directives

also add in the docker-login and ecr-push changes for serverless DAX

Fix the logic in Directive.IsEmpty() (#2236)

Update the cached value for Index.translatePartitions

In the case where a node already knows about an index, but its
assignment of partitions for that index changes (for example, when
another node goes down and the node in question is now responsible for
more partitions than it previously was), then we need to update the
cached value of Index.translatePartitions because that's used in
translation checks.

minor fixes for IDK-related bugs

WIP: tokenize CLI to access cloud

FB CLI cloud support with automatic token refresh

Also adds support for a GET command which allows making HTTP GET
queries to cloud CP which can be handy for debugging stuff. E.g. GET /v2/databases

buncha little fixes working on writelogger stuff

fix writelogger/snapshotter setup bugs

implement writelogging for importRoaringShard

add debug endpoint to MDS

use shard transactional endpoint in MDS datagen

add debugging to API related to writelogger

revert handleroption change

clean up big PR

remove "GET" command from CLI for making arbitrary HTTP request to
cloud control plane (was a messy hack and not that useful)

remove json tags from FB objects where we had to duplicate the object
elsewhere due to import loops and weren't actually json encoding it

unexport handlerOption which was exported to try to avoid doing
certain things if we're in DAX mode, but I didn't end up merging that code.

remove (hopefully) unecessary extra call to api.indexField

fix some formatting, unexport some vars, godoc, etc

oops, fix build failure

Update FeatureBase CLI to support a standard deployment

The standard deployment uses a different endpoint and request payload.
This commit tries to detect is the standard deployment is being used,
and if so, it uses a standard-specific FBQueryer.

It also modifies the auto-detection logic to try standard featurebase
and dax ports in the case where a port was not provided.

MDS API refactor (#2259)

* MDS API refactor

table IDs are exposed but only created server side

also cleaned up dax Makefile

* clean up review feedback

Co-authored-by: Travis Turner <travis@pilosa.com>

* remove TablesByName

* rip out inmem implementations and use boltdb everywhere

* remove inmem balancer, create bolt tempfile by default on startup

* WIP on snapshot table impl and test

* Minor comment and code layout adjustments.

This commit also adds the `Equals` method to `QualifiedTableID` for
equality comparisons. It's no longer safe to compare struct (two structs
might still be equal even if one of the structs doesn't have a `Name`
value.

* Use a unique docker network for each dax test

Ocassionally we would see some test failures due to a network already
existing. This shouldn't happen, but to avoid that, this commit
generates a unique name for each sub test (which gets deleted at the end
of every test).

* Fix one instance of NewQualifiedTableID losing Name

We should probably check the other instances and see if Name is getting
lost.

* simplify unique network stuff and fix api directive tests

* Remove TableIDRequest and TableIDResponse types for /table-id (#2267)

For the mds/table-id http requests, just use dax.QualifiedTableID as
both the request and response types.

* remove lattice from dax, no error on node re-reg, dax docker-compose

* various updates

* WIP: mds-refactor branch review

* no-op on SnapshotTableKeys if table is not keyed

* Makefile helpers

* add doWeCare so controller doesn't fail unnecessarily

* clean up table creation (#2272)

* Strip underscores from TableID stub name

* fix boltdb versionstore tests: generate unique, sorted tables

* fix controller test related to reregistering a node

* JobSet -> generic Set

Co-authored-by: Travis Turner <travis@pilosa.com>
Co-authored-by: Travis Turner <travis@molecula.com>

Cleanup after rebase on master

The latest rebase on master entailed all the client/batch changes as
well as some of the qcx refactoring. It made for a hairy rebase. This
commit fixes some of the tests that were failing after that rebase.

Fix batch/client import loop missed during rebase (#2280)

It's not surprising that `batch` can't import `client`. It was doing
that here (importing an error type from the `client` package). What is
surprising is that it's okay for `batch_test.go` to import `client` even
though `batch_test.go` is an internal test and therefore part of the
`batch` package.

different boltDB's for schemar/controller, explicit balancers

nice helpers for dax docker-compose, make build really fast

build FB binary outside of docker, then create Docker image with its
working dir in an empty subdirectory so it doesn't send a GB of
context to the daemon.

error on unassigned jobs and use client with timeout

fix CR feedback

deregister batch of nodes

also make removal faster via director dial timeout

implement WorkersForJobPrefix so orchestrator doesn't make up shards

also fix some godocs and remove unused method

Run sub-tasks of a Directive concurrently in a worker pool. (#2275)

* Run sub-tasks of a Directive concurrently in a worker pool.

This allows the compute node to concurrently load shapshot and writelog
data concurrently, instead of one keyset/partition/shard at a time.

It introduces a config parameter called `DirectiveWorkerPoolSize`.

* code review cleanup

* Use unique container names in DAX integration tests

We were seeing "container already exists" errors in CI, so just to be
safe, this commit constructs a unique container name for every container
in the DAX integration test run.

Stub in SystemAPI to Queryer (note: will not work if used)

This just makes is so that dax can compile. Actually implementing
system-table functionality for dax will take some planning.

Tlt/dax merge prep (#2282)

* Remove copilot directory

* Remove Dockerfile-datagen-long

* Remove orphaned RegisterNodeRequest

This type is not defined in the dax/mds/http package.

* implement TIMEQUANTUM and TTL in Table.Field type

* Remove the "service" misdirection in queryer/writelogger/snapshotter.

We had originally used an additional layer, er.. package, for a "service".
The main distinction was that the Config differed in that it was
internal, unlike the Config that we need to provide for the top-level
server config (i.e. toml). Having that additional layer just to support
a different Config seemed premature at best. So I'm removing it.

* Remove dax docker containers no longer used in tests

Since we run everything as "featurebase", we don't have multiple
container types anymore.

* Some minor comment updates

* Remove nfpm stuff related to dax

* Fix linter issues

Fix "duplicate" issues raised by sonarcloud.

run docker components of dax integration tests with coverage

trying to get dax integration coverage

add coverate volume mounts throughout dax integration tests

add a lock, tweak dax Makefile, remote flag on query handler

remove some unused code

convert batch tests to use clustertests to get coverage

maybe fix clustertests

more authclustertests fixes, test is failing locally

but also seems to have been silently failing in CI prior to these
changes... let's see if it's still silent

fix some lint to kick CI

just re-running the job wasn't working... strange behavior

remove RetryLogic test and pipe which don't work

RetryLogic test removed due to etcd changes. Seebs thinks we shouldn't
test this here.

Pipe was being ignored since we're no longer using "bash -c" to
execute the command. If we need to generate that output file we'll
either have to reintroduce bash -c and set -o pipefail so that it
actually fails properly, or figure out some other solution.

shooting into the dark...

first cut at bulk node registration

remove unused stuff from batch tests, set coverpkg to ../...

batch registration timeout and fix tests

disable most tests and don't run fb background batch test

debuggin!!!!!!!!!

and then he tried this....

Implement importer (for INSERT INTO) in the Queryer

Prior to this, we we passing a nil value in for the importer to the
planner.NewExecutionPlanner in the Queryer. This meant that INSERT INTO
statements didn't work. Now they should.

It uses the importer that we build for IDK in /idk/mds/importer.go, and
wrapps that with a type that can determine if the provided string
"index" is of the form indexName or TableKey.

turn off debug mode, fix log saving

Run sql3 test definitions in a dax integration test

There are currently 22 tests which are not passing. They are skipped in
the "skips" slice.

WIP, not working, pql queries to tests

Add TableQualifier to PQL query logic in the Queryer

Add more PQL tests to the keyed table

Allow instant node registration if registration-batch-timeout=0

When running dax services in process, we don't want to wait 3s for the
compute node to register; we know it's there because it's in the same
process.

Fixes related to IncludesColumn PQL test.

Tests for ConstRow and FieldValue

cleanup

add UnionRows and Options, better error reporting on bad queries

delete unused schemar client.go, clean up unused in batch test CI

move test timeouts into more reasonable territory

apparently this had already been done, but got merge-stommped at some point

move dax bolt test helpers into dax package

Add computer CheckIn routine (#2296)

* Add computer CheckIn routine

This adds a background routine which sends a "check-in" request to MDS
every <interval>. This is to address the case where the poller has
removed a computer node from the node list (due to a network fault, for
example), but the node is still healthy and becomes available again. In
that case, the node needs to "check-in" to tell MDS it is still there.
MDS will likely send the node a new directive with Method=reset telling
the node to delete all of its data an apply the latest directive.

* Don't send directives to Deregistered (i.e. removed) nodes

We have an issue where we're locking on sendDirective in the
controller, and when the node is unavailable, the send hangs and never
releases the lock. This is a temporary fix for that until we address the
real problem.

Fix .gitlab-ci.yml after rebase

fix some indentation shenanigans

(cherry picked from commit 20a8b5713a)
2022-12-12 09:01:20 -08:00
Garrison Davis
ab2b48da0d Stop using string keys in contexts
This fixes the OriginalIP and RequestUserID in the main featurebase
package, and the Access and Refresh tokens, the UserInfo, and the
[]string of Indexes passed with context.Context(s) in the authn package.

An empty struct was used for all of these keys (and relevant helper
functions we added) to avoid allocations where possible while still
using the context functionality.

Some of the logic in the server.GetIndexes function was fixed.

(cherry picked from commit 0f5a56c958)
2022-11-15 11:32:03 -08:00
tgruben
95287c2ee2 add flag to bypass space check (#2265)
(cherry picked from commit f987009406)
2022-11-15 11:25:39 -08:00
Seebs
d4e637eb9b drop ioutil
The ioutil package is deprecated, with all of its functions having
moved into os or io. Do the replacements so we stop having this
impending.
2022-09-30 11:25:27 -07:00
Matthew Jaffee
01a0eb0d74 add persistent history and combination of multi-line commands to CLI
"featurebase cli" will now save command history to
$HOME/.featurebase/cli_history by default. Additionally if a command
is entered across multiple lines, the newlines will be removed when
the command is saved in the history. Previously each line was saved
separately which was a bit annoying.
2022-09-30 11:22:07 -07:00
pokeeffe-molecula
15382a2863 sql3 changes (#2211)
* first cut of working (slowly) bulk insert; table valued functions and a tuple data type to support time quantums

* oversight

* filter pushdown implementation; bulk insert

* addressed some linter issues
2022-09-30 11:21:11 -07:00
Seebs
e47bdb7889 cleaned up sync from private repo 2022-09-30 11:20:58 -07:00
Seebs
f6d17b1b58 refactor testing to share clusters more often
When doing tests, we create a ton of one-off clusters. This
turns out to be expensive and slow. Fixing it is surprisingly hard.

Fundamentally: If we're sharing clusters, we need to use different
indexes for each test, to avoid clashes. This changes index names.
As a side-effect, this reorders many partition-based things, like
the order keys are returned in. Thus, to fix this, we change a lot
of tests to no longer depend on the *order* in which strings are
returned.

Having done that, we can also discard the ModHasher behavior, since
that only existed to allow us to reliably predict partitioning.

The basic design is as follows: Instead of a cluster being a
[]*Command, a "shareable" cluster is now a []*Command plus some
flags, and a "cluster" is a pointer to a possibly-shared cluster,
plus a link to the specific test using this specific cluster,
and correspondingly, its test name suitably coerced to be a valid
index name prefix.

The "test.Cluster" object now has methods to allow retrieving an
index name, and also implemnts fmt.Formatter to let you use,
e.g., `%i` with it in Sprintf to get "the index name, plus an i".
(This works for everything but %p and %T.)

This allows us to consistently rework all the many things that
use index names in a persistent way.

We also have `MustUnshared` and `MustRunUnsharedCluster` methods
which allow us to specify that a given test needs its own cluster
for some reason. For instance, the tests that want to run backups
need their own isolated cluster, and the tests that want to close
or reopen nodes need their own cluster because a reopened cluster
won't have working GRPC for some reason.

On "closing" a shared cluster (actually the test-specific wrapper
that reflects a given sharing), we delete any indexes starting with
that test's index name prefix. Otherwise, the huge pile of open
indexes prevents `go test -race` from working on MacOS, where we
run out of address space too quickly.

This is fairly enormous but most of the individual changes are
fairly trivial things like replacing the string "i" with "c.Idx()".

We also tweaked a test that failed for me a couple of times to
not depend on sort order.
2022-09-30 11:10:47 -07:00
Seebs
6207da9c48 reduce size of KeyReplication test
This test used to be large, because it was testing some features that
were refactored out in October of 2019. Since we no longer have the
"buffer growth" to check, let's check a much smaller file.
2022-09-30 11:10:47 -07:00
pokeeffe-molecula
204558b46f added /sql endpoint; implemented SHOW TABLES (#1935)
* squashed 45 commits into one :)

* tlt/sql experiment (#2035)

* Move PlanOperator to sql3/planner/types package

includes:
type PlanOperatorColumn struct
type PlanOperator interface

* Remove planner dependencies from pilosa package

The goal after this is to prevent the planner package (which doesn't exist yet)
from being imported by the pilosa package; we just want it injected into the server
in server/server.go. This is because the planner package uses pilosa types, so we need
to avoid circular dependencies.

Added ExecutionPlannerFn
Make public: pilosa.ExecOptions
Added a pilosa.Executor interface
Added a planner.types.CompilePlanner interface
Isolated the planner calls to:
- Executor.Execute()
- *API.[method]()

* Move executionplanner files into the sql3/planner package.

This required a bit of gymnastics, and there are some things around
FieldOptions which need to be addressed soon.

* Remove the hacky FieldOptions stuff I added earlier

This implementation just uses the pilosa.FieldOption functional options
provided by the API (as opposed to trying to build a FieldOptions
object.

It also changes field types to constants. These are private for now, but
if we need to make them public, we should put them in the planner/types
package.

* Implement the "scale" value from Decimal(scale)

Also, precision and scale were currently reversed in the parser. This
fixes that.

* Modify the parser to handle CACHETYPE <type> SIZE <size>

It's a little odd to me that the cache type values are Tokens, but I
guess it's ok. One thing to keep in mind is that FeatureBase expects
lowercase values, so this commit changes the parser to set the value to
the lowercase version of the type.

* Fix the /sql2 tests

This entailed a combination of commenting out or t.Skip()-ing tests
which covered code in the parser that has been commented out or removed
as not currently supported in sql3.

It also adds some coverage for the sql.Contraint stringers.

* Prevent JSON sql results from containing closing commas

This commit just re-works the existing output code to avoid inserting
closing commas (which results in invalid JSON).

* Enhance the CREATE TABLE test coverage.

In particular, ensure that the fields which get created in FeatureBase
are what we expect based on the fields defined in the CREATE TABLE
statement.

This also ensures that the TIMEQUANTUM and CACHETYPE contraints are not
provided for the same field (since those constraints are not supported
together).

* Adjust the EBNF file to indicate SIZE contraint is optional

A CACHETYPE can be provided without a SIZE. This change indicates that
SIZE is optional.

* Remove `executionplanner_` from file names (#2040)

* implementation of ALTER TABLE (sans column RENAME)

* refactored expression analysis; added more robust type checking; all unary and bin ops function on ints

* added type support for expressions; full bin/unary op support; added cast; more literal support

* cast int to all other types

* all literals (except idset, stringset & timestamp) make it thru; cast to all types with int as source now works

* implemented LIKE/NOT LIKE

* Implemented IS [NOT] NULL

* Move sql2 files into sql3/parser package (#2045)

* Move sql2 files into sql3/parser package

This also removes the sql2 package.

* Fix tests which were typing _id fields as INT intead of ID

* implemented BETWEEN, NOT BETWEEN

* Add featurebase/error package (#2046)

* Add featurebase/error package

I copied the `dax/errors` package which I am starting to use in the DAX
prototype into `featurebase/errors` in order to start using it with the
sql3 package. It's basically a wrapper around `github.com/pkg/errors`,
but it uses a customer coded error.

The sql package can define its own errors based on the
`featurebase/errors` types. Then do things like `Wrap()` and `Is()`.

* Address the linter complaints: shadowed variables, unreachable code

* implemented IN & NOT IN with expression lists

* first cut of CASE

* Fixed some errors from rebase

* updated bnf; removed unused code; tightened up error handling

* first crack at basic CLI for SQL3

Use: `featurebase cli`

Still lots to do here, but for example:

> select count(*) from tremor
+--------------+
|        COUNT |
+--------------+
| 1.158321e+06 |
+--------------+

* Iterate on the CLI (#2057)

Handle the errors.
Add an "exit" command.
Add some general formatting and white space.

Add termination character: ";" (semicolon)

This commit allows a user to provide multiple or partial SQL statements.

Example of multiple statements:
```
show tables; select * from foo;
```

Example of partial (multi-line) statements:
```
select *
from foo;
```

Don't uppercase the header values

* error refactoring; first cut of TOP; remove unused code; use log.Printf instead of fmt.Printf

* fixed a bug with QualifiedRef from refactoring; added bones of INSERT; removal of unused code; tightened up errors more; fixed failing tests

* single value list for INSERT

* Update bnf per discussion with Travis; INSERT now doing the requisite stuff

* Pat's eyes went square - nothing wrong with TOP, Pat needed to learn arrays again.

* improved some errors; fixed tests to suit

* send warnings back in the api; update CLI to display warnings

* start warning on stuff not implemented so we don't get bugged about it

* Tlt/sql experiment (#2063)

* Expresssion -> Expression

* Add SQL planner test

- adds a test to which it is easier to add tables and SQL statments
- un-exports all of the expression types
- removes the planner pointer from the expression types (it can be added
  back later if need be)

* Fix where clause on a string field

Prior to this commit, the binary expression for a where clause on a
string field was building the call by providing a range operator which
is typically used for BSI fields. This changes it to use the call.Args
for string values.

* Update planner tests to handle multiple sql for the same results

* Reorganize SQL tests

Introduce a test/helpers package and move shared MustQueryRows into that
package.

* Add a compatibility map for field types. (#2064)

This is primarily to address the fact that ID fields were previously
incompatible with INT literals.

We should probably consider introducing a custom type for FieldType
which can be used to define compatibilities.

* significantly refactored type checking

* Handle nil (NULL) values in the sql CLI. (#2067)

go-pretty panics if the interface{} field value is nil. This replaces
nil values with a "NULL" string.

* Squash some commits

fixed a still failing test

added line, col to all error messages

refactored source handling to enable table aliases

fixed some copypasta per review

warnings for order by & topn; implemented select as a source

starting to handle in (select...); added stub for optimizer

JSON-encode the sql error and warning strings (#2069)

Error strings with unencoded characters (like double quotes) were
resulting in invalid json.

got insert working; added symbol table; added concrete optimizer; added nascent NestedLoopsOperator; rewrite "where foo in (select..." as inner join

* all about the sets (#2085)

* implemented setcontains()

* implemented set literal; insert set column values; setcontains/all/any both in expr eval and pql filters

* Convert test to use latest framework. (#2086)

* fixed some comments

* removed refactored tests

Co-authored-by: Travis Turner <travis@pilosa.com>

* Add support for Decimal fields to the sql test. (#2090)

* dates (#2094)

* return dates as strings in output; tightened up decimal type checking

* return dates as strings in output; tightened up decimal type checking

* fixed failing tests after decimal changes

* can now insert decimal values

* implemented insert for timestamp data type; implemented current_date, current_timestamp constants

* fixed some failing tests

* handle date literals from strings in insert statements

* changes from feedback

* Fix pointer method error

* sql3 API interface (#2110)

* Introduce API-related interfaces: SchemaAPI, ComputeAPI

The sql3 code was relying on the pointer: *pilosa.API in order to call
API methods directly on the local node. If we want to import and use the
sql3 package in another service (the DAX queryer, for example), we need
to be able to use an implementation of an interface for those API method
calls.

This commit introduces two interfaces, both automatically implemented by
pilosa.API:
- SchemaAPI
- ComputeAPI

* Convert sql3 code to use IndexInfo instead of Index

The sql3 code was relying on a *pilosa.Index and its methods to get
general information like index and field name, type, etc. This commit
converts everything to use a *pilosa.IndexInfo instead.

This allows us to modify the SchemaAPI interface to also return
IndexInfo instead of Index, which will be a lot easier to implement in a
non-pilosa package (like DAX); creating a *pilosa.Index requires
providing things like data directory paths and holders, which are not
necessary for these use cases.

* Unary and Binary Ops R US plus CAST (#2111)

* implemented string literal for timestamp epoch

* fixed failing test

* fixed the failing test again

* refactored tests; implemented unary op tests for all datatypes; implemented binop tests for int/int, int/id, int/decimal & ID/int

* implemented all binary ops for INT & all other types, ID & all other types

* implemented binary ops for DECIMAL types & all other types

* added STRING & BOOL to various tests; implemented all remaining binOp tests

* fix up some stuff after rebasing

* refactored test defs into multiple files; implemented CAST for every datatype

* added tests for like/not like

* addressed review feedback

* addressed type review feedback

* tightened up IS [NOT] NULL behavior plus tests (#2118)

* tightened up IS [NOT] NULL behavior plus tests

* BETWEEN/NOT BETWEEN with all data types

* addressed review feedback

* Handle negative integers in column min/max constraints (#2120)

This commit parses the min/max contraint as an expression, as opposed to
an int literal, so that negative values are treated as Unary
expressions.

There currently isn't support for min/max constraints on `decimal`
fiels, so for now this change only expects +/- integer values.

* Implement the CREATE TABLE keypartitions logic (#2123)

* Execution time, IN/NOT IN & multiple aggregates (#2124)

* added display of execution time

* IN/NOT IN tests for all data types

* fixed date parsing

* removed duplicative tests

* refactoring aggregates

* suport multiple aggregates

* Address review feedback

* final round of feedback

* Add method SchemaAPI.CreateIndexAndFields() (#2127)

In order to support a CREATE TABLE statement as a single command, this
commit alters the SchemaAPI interface to contain a single method which
handles both the index and its fields. It also updates the sql3 code to
use this interface instead of CreateIndex() and CreateField()
indepedently.

* Symbol Handling (Again) (#2129)

* Refactored symbol handling in the planner; re-instated the select as source tests

* removed commented out code

* addressing review feedback

* Move hard-coded _id field out of planner and into interface implementation (#2130)

This commit moves the hard-coded addition of the `_id` field from the
planner to the SchemaAPI.IndexInfo() implementation method.

NOTE: If anything was expecting SchemaAPI.Schema() to also return the
`_id` field as part of its field list in each table, then it would not
be there because the `_id` field is only added in the IndexInfo() method
for now. Currently that's not a problem because nothing is expecting the
`_id` field for `Schema()`.

* Multiple aggregates, all aggregates stand alone and in GROUP BY (#2132)

* handle multiple aggregates in group by queries

* added handling for avg() aggregate both stand alone and in group by

* tightened up sum & avg outside of group by

* added min, max & percentile

* added warnings

* Make MaterializedRowSet implement the PlanOperator interface. (#2133)

This commit refactors the PQLMultiGroupByOperator to have a PlanOperator
as its output. Then, when it initializes, it sets up a
MaterializedRowSet and populates that with the values from the multiple
group by operations.

* added explicit min/max pql operators

* saved a file I forgot to save

* per review

* Un-indent some if/else nesting (#2136)

Co-authored-by: Travis Turner <travis@pilosa.com>

* Add optional `name` argument to test structs.

This commit adds the `name` argument to `tableTest` and `sqlTest` so
that a test can be optionally named. This allows a developer to more
easily run/identify a particular test by name.

* Inbuilt functions (redux) (#2141)

* set functions type parameter type checking

* implemented datepart

* include SQL3 type in SHOW COLUMNS output

* fixed select as source; failing SHOW COLUMNS test

* select in select list

* dump output columns; handle optimization for select list subqueries

* make it an error to return multiple rows for a select list subquery

* added description

* contants and test coverage for datepart function

* SQL3 Refactor-palooza (#2182)

* removed unneeded IsAggregate()

* first cut of working nested loops operator aka INNER JOIN

* remove selectListItemPlanExpression

* added some warnings

* all the tests are passing again!

* addressed some linter complaints

* added basic order by

* bug fixes; added 'or replace'/'replace' to insert

* for insert references should return appropriately

* added back ability to use subquery singleton expressions

* removed dead code; fixed test

* json-able plan, Schema() plus refactoring

* fixed dumb code

* add some tests for time quantum behavior

* Code cleanup during review. Also fixed INSERT to keyed table bug.

This commit contains a lot of minor adjustments made during code review.

It also contains a bug fix that was preventing INSERT into a keyed table
(i.e. _id type STRING) from working.

Co-authored-by: Travis Turner <travis@molecula.com>

* Fix expected min/max on timestamp column test (decimal field)

I don't know why this changed, but presumably something to do with
decimal related work that happened on master.

* Fix compile problem after rebase

* review feedback

Co-authored-by: Matthew Jaffee <jaffee@pilosa.com>
Co-authored-by: Travis Turner <travis@pilosa.com>
Co-authored-by: Travis Turner <travis@molecula.com>
Co-authored-by: Fletcher Haynes <fletcher@capitalprawn.com>
2022-09-30 11:10:24 -07:00