remove un-needed files

This commit is contained in:
pokeeffe-molecula 2022-01-08 16:00:46 -06:00
parent 4743624210
commit a5c36d5c21
2 changed files with 0 additions and 260 deletions

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@ -1,188 +0,0 @@
#!/bin/bash
#path to the featurebase.conf file
CONFIG_FILE_PATH="/etc/featurebase.conf"
#path to the featurebase.service file
SERVICE_FILE_PATH="/etc/systemd/system/featurebase.service"
AWS_INSTANCE_ID=""
#IP of this node
PRIVATE_IP=""
PRIVATE_IP_INDEX=-1
#IPs of the cluster
CLUSTER_IPS=""
get_aws_instance_id() {
echo "Getting AWS instance ID..."
while true
do
curl -s http://169.254.169.254/latest/meta-data/instance-id > /dev/null
if [ $? -eq 0 ]
then
break
fi
done
AWS_INSTANCE_ID=`curl http://169.254.169.254/latest/meta-data/instance-id`
echo "AWS instance ID is: $${AWS_INSTANCE_ID}"
}
wait_on_all_cluster_ips() {
echo "Waiting on all cluster IPs..."
# get IP for node
IPS=$(aws ec2 describe-instances --filters "Name=instance-state-name, Values=running" "Name=tag:Role, Values=cluster_node" "Name=tag:Prefix, Values=${cluster_prefix}" --query 'Reservations[*].Instances[*].PrivateIpAddress' --output text --region ${region})
IP_LENGTH=`echo "$IPS" | wc -l`
for i in {0..24}
do
echo "Comparing $${IP_LENGTH} with ${node_count}"
if [ $IP_LENGTH == "${node_count}" ]; then
echo "Cluster is up after $${i} tries."
break
fi
sleep 10s
done
if [ $IP_LENGTH != "${node_count}" ]; then
echo "Timed out waiting for cluster to be available $${IP_LENGTH} actual nodes compared with ${node_count} desire nodes."
exit 1
fi
}
get_private_ip() {
echo "Getting private IP address..."
PRIVATE_IP=$(aws ec2 describe-instances --filters "Name=instance-state-name, Values=running" "Name=instance-id,Values=$${AWS_INSTANCE_ID}" --query 'Reservations[*].Instances[*].PrivateIpAddress' --output text --region ${region})
echo "Private IP is $${PRIVATE_IP}"
}
get_cluster_ips() {
echo "Getting cluster IPs..."
# get IP for node
IPS=$(aws ec2 describe-instances --filters "Name=instance-state-name, Values=running" "Name=tag:Role, Values=cluster_node" "Name=tag:Prefix, Values=${cluster_prefix}" --query 'Reservations[*].Instances[*].PrivateIpAddress' --output text --region ${region})
IP_LENGTH=`echo "$IPS" | wc -l`
IFS=$'\n'
cnt=0
for ip in $IPS
do
echo $cnt $ip
if (($cnt + 1 != $IP_LENGTH))
then
CLUSTER_IPS="$${CLUSTER_IPS}p$${cnt}=http://$ip:10301,"
else
CLUSTER_IPS="$${CLUSTER_IPS}p$${cnt}=http://$ip:10301"
fi
echo "comparing $ip to $PRIVATE_IP"
if [ "$ip" = "$PRIVATE_IP" ]; then
PRIVATE_IP_INDEX=$cnt
fi
cnt=$((cnt+1))
done
echo "CLUSTER_IPS are: $${CLUSTER_IPS}"
}
write_featurebase_config_file() {
echo "Writing featurebase.conf file..."
cat << EOT > $${CONFIG_FILE_PATH}
name = "p$${PRIVATE_IP_INDEX}"
bind = "0.0.0.0:10101"
bind-grpc = "0.0.0.0:20101"
data-dir = "/data/featurebase"
log-path = "/var/log/molecula/featurebase.log"
max-file-count=900000
max-map-count=900000
long-query-time = "10s"
[postgres]
bind = "localhost:55432"
[cluster]
name = "${cluster_prefix}"
replicas = ${fb_cluster_replica_count}
[etcd]
listen-client-address = "http://$${PRIVATE_IP}:10401"
listen-peer-address = "http://$${PRIVATE_IP}:10301"
initial-cluster = "$${CLUSTER_IPS}"
[metric]
service = "prometheus"
EOT
echo "featurebase.conf written to $${CONFIG_FILE_PATH}."
}
write_featurebase_service_file() {
echo "Writing featurebase.service file..."
cat << EOT > $${SERVICE_FILE_PATH}
# Not Ansible managed
[Unit]
Description="Service for FeatureBase"
[Service]
RestartSec=30
Restart=on-failure
EnvironmentFile=
User=molecula
ExecStart=/usr/local/bin/featurebase server -c /etc/featurebase.conf
[Install]
EOT
echo "featurebase.service written to $${SERVICE_FILE_PATH}."
}
#get the instance id
get_aws_instance_id
#copy the script so we can look at it later if needed
sudo cp /var/lib/cloud/instances/$${AWS_INSTANCE_ID}/user-data.txt /home/ec2-user/setup_cluster_node.sh
#wait for the count of nodes to equal requested nodes
wait_on_all_cluster_ips
#get private ip
get_private_ip
#generate cluster ips
get_cluster_ips
#write the featurebase config file
write_featurebase_config_file
#write the featurebase service file
write_featurebase_service_file
#get the featurebase binary and put in in the right spot
echo "Getting featurebase binary..."
curl --fail --header "PRIVATE-TOKEN: ${gitlab_token}" -o "/home/ec2-user/featurebase_linux_arm64" https://gitlab.com/api/v4/projects/molecula%2Ffeaturebase/jobs/artifacts/${branch}/raw/featurebase_linux_arm64?job=build%20for%20linux%20arm64
chown ec2-user:ec2-user "/home/ec2-user/featurebase_linux_arm64"
chmod ugo+x "/home/ec2-user/featurebase_linux_arm64"
mv /home/ec2-user/featurebase_linux_arm64 /usr/local/bin/featurebase
echo "featurebase binary copied."
sudo mkdir /data
sudo mkfs.ext4 /dev/nvme1n1
sudo mount /dev/nvme1n1 /data
adduser molecula
sudo mkdir /var/log/molecula
sudo chown molecula /var/log/molecula
sudo mkdir -p /data/featurebase
sudo chown molecula /data/featurebase
sudo systemctl daemon-reload
sudo systemctl start featurebase
sudo systemctl enable featurebase
sudo systemctl status featurebase
echo "Done!"

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@ -1,72 +0,0 @@
#!/bin/bash
AWS_INSTANCE_ID=""
get_aws_instance_id() {
echo "Getting AWS instance ID..."
while true
do
curl -s http://169.254.169.254/latest/meta-data/instance-id > /dev/null
if [ $? -eq 0 ]
then
break
fi
done
AWS_INSTANCE_ID=`curl http://169.254.169.254/latest/meta-data/instance-id`
echo "AWS instance ID is: $${AWS_INSTANCE_ID}"
}
wait_on_all_ingest_ips() {
echo "Waiting on all cluster IPs..."
# get IP for node
IPS=$(aws ec2 describe-instances --filters "Name=instance-state-name, Values=running" "Name=tag:Role, Values=ingest_node" "Name=tag:Prefix, Values=${cluster_prefix}" --query 'Reservations[*].Instances[*].PrivateIpAddress' --output text --region ${region})
IP_LENGTH=`echo "$IPS" | wc -l`
for i in {0..24}
do
echo "Comparing $${IP_LENGTH} with ${node_count}"
if [ $IP_LENGTH == "${node_count}" ]; then
echo "Cluster is up after $${i} tries."
break
fi
sleep 10s
done
if [ $IP_LENGTH != "${node_count}" ]; then
echo "Timed out waiting for cluster to be available $${IP_LENGTH} actual nodes compared with ${node_count} desire nodes."
exit 1
fi
}
#copy the script so we can look at it later if needed
sudo cp /var/lib/cloud/instances/$${AWS_INSTANCE_ID}/user-data.txt ~/setup_ingest_node.sh
#get the instance id
get_aws_instance_id
#wait for the count of nodes to equal requested nodes
wait_on_all_ingest_ips
echo "Getting featurebase binary..."
curl --fail --header "PRIVATE-TOKEN: ${gitlab_token}" -o "/home/ec2-user/featurebase_linux_arm64" https://gitlab.com/api/v4/projects/molecula%2Ffeaturebase/jobs/artifacts/${branch}/raw/featurebase_linux_arm64?job=build%20for%20linux%20arm64
chown ec2-user:ec2-user "/home/ec2-user/featurebase_linux_arm64"
chmod ugo+x "/home/ec2-user/featurebase_linux_arm64"
mv /home/ec2-user/featurebase_linux_arm64 /usr/local/bin/featurebase
echo "featurebase binary copied."
sudo mkdir /data
sudo mkfs.ext4 /dev/nvme1n1
sudo mount /dev/nvme1n1 /data
sudo chown -R ec2-user /data
echo "Installing pytest"
pip3 install -U pytest
pip3 install -U requests
echo "Done."