fabro/checkpoint.json

{
  "timestamp": "2026-03-16T12:07:33.659861Z",
  "current_node": "extract_patch",
  "completed_nodes": [
    "start",
    "setup",
    "solve",
    "extract_patch"
  ],
  "node_retries": {
    "solve": 4,
    "extract_patch": 1,
    "start": 1,
    "setup": 1
  },
  "context_values": {
    "internal.run_id": "01KKV8D41191VAT5BTMHHAE18A",
    "failure_class": "",
    "internal.retry_count.setup": 1,
    "internal.retry_count.solve": 4,
    "failure_signature": "",
    "internal.retry_count.extract_patch": 1,
    "thread.solve.current_node": "extract_patch",
    "graph.rankdir": "LR",
    "internal.retry_count.start": 1,
    "command.output": "",
    "thread.start.current_node": "setup",
    "internal.thread_id": "solve",
    "internal.fidelity": "compact",
    "thread.setup.current_node": "solve",
    "outcome": "success",
    "graph.goal": "Issue when passing empty lists/arrays to WCS transformations\nThe following should not fail but instead should return empty lists/arrays:\r\n\r\n```\r\nIn [1]: from astropy.wcs import WCS\r\n\r\nIn [2]: wcs = WCS('2MASS_h.fits')\r\n\r\nIn [3]: wcs.wcs_pix2world([], [], 0)\r\n---------------------------------------------------------------------------\r\nInconsistentAxisTypesError                Traceback (most recent call last)\r\n<ipython-input-3-e2cc0e97941a> in <module>()\r\n----> 1 wcs.wcs_pix2world([], [], 0)\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in wcs_pix2world(self, *args, **kwargs)\r\n   1352         return self._array_converter(\r\n   1353             lambda xy, o: self.wcs.p2s(xy, o)['world'],\r\n-> 1354             'output', *args, **kwargs)\r\n   1355     wcs_pix2world.__doc__ = \"\"\"\r\n   1356         Transforms pixel coordinates to world coordinates by doing\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in _array_converter(self, func, sky, ra_dec_order, *args)\r\n   1267                     \"a 1-D array for each axis, followed by an origin.\")\r\n   1268 \r\n-> 1269             return _return_list_of_arrays(axes, origin)\r\n   1270 \r\n   1271         raise TypeError(\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in _return_list_of_arrays(axes, origin)\r\n   1223             if ra_dec_order and sky == 'input':\r\n   1224                 xy = self._denormalize_sky(xy)\r\n-> 1225             output = func(xy, origin)\r\n   1226             if ra_dec_order and sky == 'output':\r\n   1227                 output = self._normalize_sky(output)\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in <lambda>(xy, o)\r\n   1351             raise ValueError(\"No basic WCS settings were created.\")\r\n   1352         return self._array_converter(\r\n-> 1353             lambda xy, o: self.wcs.p2s(xy, o)['world'],\r\n   1354             'output', *args, **kwargs)\r\n   1355     wcs_pix2world.__doc__ = \"\"\"\r\n\r\nInconsistentAxisTypesError: ERROR 4 in wcsp2s() at line 2646 of file cextern/wcslib/C/wcs.c:\r\nncoord and/or nelem inconsistent with the wcsprm.\r\n```\n",
    "internal.node_visit_count": 1,
    "command.stderr": "",
    "current_node": "extract_patch",
    "current.preamble": "Goal: Issue when passing empty lists/arrays to WCS transformations\nThe following should not fail but instead should return empty lists/arrays:\r\n\r\n```\r\nIn [1]: from astropy.wcs import WCS\r\n\r\nIn [2]: wcs = WCS('2MASS_h.fits')\r\n\r\nIn [3]: wcs.wcs_pix2world([], [], 0)\r\n---------------------------------------------------------------------------\r\nInconsistentAxisTypesError                Traceback (most recent call last)\r\n<ipython-input-3-e2cc0e97941a> in <module>()\r\n----> 1 wcs.wcs_pix2world([], [], 0)\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in wcs_pix2world(self, *args, **kwargs)\r\n   1352         return self._array_converter(\r\n   1353             lambda xy, o: self.wcs.p2s(xy, o)['world'],\r\n-> 1354             'output', *args, **kwargs)\r\n   1355     wcs_pix2world.__doc__ = \"\"\"\r\n   1356         Transforms pixel coordinates to world coordinates by doing\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in _array_converter(self, func, sky, ra_dec_order, *args)\r\n   1267                     \"a 1-D array for each axis, followed by an origin.\")\r\n   1268 \r\n-> 1269             return _return_list_of_arrays(axes, origin)\r\n   1270 \r\n   1271         raise TypeError(\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in _return_list_of_arrays(axes, origin)\r\n   1223             if ra_dec_order and sky == 'input':\r\n   1224                 xy = self._denormalize_sky(xy)\r\n-> 1225             output = func(xy, origin)\r\n   1226             if ra_dec_order and sky == 'output':\r\n   1227                 output = self._normalize_sky(output)\r\n\r\n~/Dropbox/Code/Astropy/astropy/astropy/wcs/wcs.py in <lambda>(xy, o)\r\n   1351             raise ValueError(\"No basic WCS settings were created.\")\r\n   1352         return self._array_converter(\r\n-> 1353             lambda xy, o: self.wcs.p2s(xy, o)['world'],\r\n   1354             'output', *args, **kwargs)\r\n   1355     wcs_pix2world.__doc__ = \"\"\"\r\n\r\nInconsistentAxisTypesError: ERROR 4 in wcsp2s() at line 2646 of file cextern/wcslib/C/wcs.c:\r\nncoord and/or nelem inconsistent with the wcsprm.\r\n```\n\n\n## Completed stages\n- **setup**: fail\n  - Script: `git clone https://github.com/astropy/astropy.git . && git checkout d5bd3f68bb6d5ce3a61bdce9883ee750d1afade5 && python -m pip install -e .[test] --verbose`\n  - Stdout:\n    ```\n    fatal: destination path '.' already exists and is not an empty directory.\n    ```\n  - Stderr: (empty)\n- **solve**: fail\n\n## Context\n- failure_class: transient_infra\n- failure_signature: solve|transient_infra|api_transient|gemini|rate_limited\n"
  },
  "logs": [],
  "node_outcomes": {
    "setup": {
      "status": "fail",
      "context_updates": {
        "command.stderr": "",
        "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n"
      },
      "failure": {
        "message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n",
        "failure_class": "deterministic"
      },
      "duration_ms": 20
    },
    "extract_patch": {
      "status": "success",
      "context_updates": {
        "command.stderr": "",
        "command.output": ""
      },
      "notes": "Script completed: git diff",
      "duration_ms": 23
    },
    "start": {
      "status": "success",
      "duration_ms": 0
    },
    "solve": {
      "status": "fail",
      "failure": {
        "message": "LLM error: Rate limited by gemini: You exceeded your current quota, please check your plan and billing details. For more information on this error, head to: https://ai.google.dev/gemini-api/docs/rate-limits. To monitor your current usage, head to: https://ai.dev/rate-limit. \n* Quota exceeded for metric: generativelanguage.googleapis.com/generate_requests_per_model_per_day, limit: 250, model: gemini-3.1-pro\nPlease retry in 11h52m28.397311178s.",
        "failure_class": "transient_infra",
        "failure_signature": "api_transient|gemini|rate_limited"
      },
      "duration_ms": 153314
    }
  },
  "next_node_id": "exit",
  "loop_failure_signatures": {
    "setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1
  },
  "node_visits": {
    "extract_patch": 1,
    "setup": 1,
    "solve": 1,
    "start": 1
  }
}