mirror of
https://github.com/fabro-sh/fabro.git
synced 2026-08-28 05:27:41 +00:00
760 lines
No EOL
31 KiB
JSON
760 lines
No EOL
31 KiB
JSON
{
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"title": "Triage GitHub Dependabot alerts and open verified dependency-patch PRs",
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"spec": {
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"run_id": "01KWFA6TC0GC574MQMR4E0MV5D",
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"settings": {
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"project": {
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"name": null,
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"description": null,
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"metadata": {}
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},
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"workflow": {
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"name": null,
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"description": null,
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"graph": "workflow.fabro",
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"metadata": {}
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},
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"run": {
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"goal": {
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"type": "inline",
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"value": "Triage GitHub Dependabot alerts and open verified dependency-patch PRs"
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},
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"working_dir": null,
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"metadata": {},
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"inputs": {},
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"model": {
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"provider": "anthropic",
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"name": "claude-sonnet-4-6",
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"fallbacks": [],
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"controls": {
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"reasoning_effort": null,
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"speed": null
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}
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},
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"git": {
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"author": null
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},
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"prepare": {
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"commands": [],
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"timeout_ms": 300000
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},
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"execution": {
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"mode": "normal",
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"approval": "prompt"
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},
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"checkpoint": {
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"exclude_globs": [],
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"skip_git_hooks": false
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"clone": {
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"enabled": true
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},
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"run_branch": {
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"enabled": true,
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"push": true
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"meta_branch": {
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"enabled": true,
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"push": true
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"environment": {
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"id": "fabro-dev",
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"provider": "daytona",
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"image": {
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"docker": null,
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"dockerfile": {
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"type": "inline",
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"value": "FROM ubuntu:24.04\n\nRUN apt-get update && apt-get install -y --no-install-recommends \\\n curl git ripgrep ca-certificates build-essential pkg-config libssl-dev unzip python3 \\\n xvfb xfce4 xfce4-terminal x11vnc novnc dbus-x11 \\\n libx11-6 libxrandr2 libxext6 libxrender1 libxfixes3 libxss1 libxtst6 libxi6 \\\n && rm -rf /var/lib/apt/lists/*\n\n# Install real Chromium (not the snap stub) via xtradeb PPA\nRUN apt-get update && apt-get install -y --no-install-recommends \\\n software-properties-common curl gnupg \\\n && add-apt-repository -y ppa:xtradeb/apps \\\n && apt-get update \\\n && apt-get install -y --no-install-recommends chromium \\\n && rm -rf /var/lib/apt/lists/*\n\n# Wrapper: Chromium needs --no-sandbox when running as root in a container,\n# and --disable-dev-shm-usage avoids crashes from small /dev/shm\nRUN printf '#!/bin/bash\\nexec /usr/bin/chromium --no-sandbox --disable-dev-shm-usage \"$@\"\\n' \\\n > /usr/local/bin/chromium-wrapper \\\n && chmod +x /usr/local/bin/chromium-wrapper\n\n# Make the wrapper the default in the system .desktop file and via alternatives\nRUN sed -i 's|^Exec=.*|Exec=/usr/local/bin/chromium-wrapper %U|' \\\n /usr/share/applications/chromium.desktop \\\n && update-alternatives --install /usr/bin/x-www-browser x-www-browser \\\n /usr/local/bin/chromium-wrapper 100\n\n# Tell XFCE's exo-open that Chromium is the WebBrowser helper (system-wide)\nRUN mkdir -p /etc/xdg/xfce4 /usr/share/xfce4/helpers \\\n && printf 'WebBrowser=custom-WebBrowser\\n' > /etc/xdg/xfce4/helpers.rc \\\n && printf '[Desktop Entry]\\n\\\nVersion=1.0\\n\\\nType=X-XFCE-Helper\\n\\\nName=Chromium\\n\\\nIcon=chromium\\n\\\nX-XFCE-Category=WebBrowser\\n\\\nX-XFCE-CommandsWithParameter=/usr/local/bin/chromium-wrapper \"%%s\"\\n\\\nX-XFCE-Commands=/usr/local/bin/chromium-wrapper\\n' \\\n > /usr/share/xfce4/helpers/custom-WebBrowser.desktop\n\n# GitHub CLI\nRUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg \\\n | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg \\\n && echo \"deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main\" \\\n | tee /etc/apt/sources.list.d/github-cli.list > /dev/null \\\n && apt-get update && apt-get install -y --no-install-recommends gh \\\n && rm -rf /var/lib/apt/lists/*\n\n# Rust\nRUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y\nENV PATH=\"/root/.cargo/bin:${PATH}\"\nRUN rustup toolchain install nightly-2026-04-14 --profile minimal --component clippy,rustfmt\nRUN cargo install cargo-nextest --locked\nENV CARGO_INCREMENTAL=0\n\n# Bun\nRUN curl -fsSL https://bun.sh/install | bash\nENV PATH=\"/root/.bun/bin:${PATH}\"\n\nWORKDIR /root\n"
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}
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},
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"resources": {
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"cpu": 8,
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"memory": "16GB",
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"disk": "20GB"
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},
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"network": {
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"mode": "allow_all",
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"allow": []
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},
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"lifecycle": {
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"preserve": false,
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"stop_on_terminal": true,
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"auto_stop": "30m"
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},
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"labels": {
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"repo": "fabro-sh/fabro"
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},
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"env": {}
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},
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"notifications": {},
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"interviews": {
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"provider": null,
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"slack": null
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},
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"agent": {
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"fabro_tools": false,
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"permissions": null,
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"mcps": {}
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},
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"hooks": [],
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"scm": {
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"owner": null,
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"repository": null,
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"github": null
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},
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"pull_request": {
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"enabled": true,
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"draft": false,
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"auto_merge": false,
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"merge_strategy": "squash"
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},
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"artifacts": {
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"include": []
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},
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"integrations": {
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"github": {
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"permissions": {
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"contents": "write",
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"checks": "read",
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"vulnerability_alerts": "read",
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"pull_requests": "write"
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}
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}
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}
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}
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},
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"graph": {
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"name": "PatchCves",
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"nodes": {
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"exit": {
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"id": "exit",
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"attrs": {
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"String": "Exit"
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"model": {
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"String": "claude-opus-4-8"
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},
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"provider": {
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"String": "anthropic"
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},
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"shape": {
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"String": "Msquare"
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}
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"start": {
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"id": "start",
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"attrs": {
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"label": {
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"model": {
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"String": "claude-opus-4-8"
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"shape": {
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"String": "Mdiamond"
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}
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}
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"id": "patch",
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"attrs": {
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"model": {
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"String": "claude-opus-4-8"
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"prompt": {
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"String": "/eng-patch-cves"
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"label": {
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"String": "Patch CVEs"
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},
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"provider": {
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"String": "anthropic"
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"edges": [
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{
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"attrs": {
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"String": "\n * { model: claude-opus-4-8; }\n "
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"String": "Triage GitHub Dependabot alerts and open verified dependency-patch PRs"
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"String": "LR"
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"graph_source": "digraph PatchCves {\n graph [\n goal=\"Triage GitHub Dependabot alerts and open verified dependency-patch PRs\",\n model_stylesheet=\"\n * { model: claude-opus-4-8; }\n \"\n ]\n rankdir=LR\n\n start [shape=Mdiamond, label=\"Start\"]\n exit [shape=Msquare, label=\"Exit\"]\n\n // Single agent stage. The `/eng-patch-cves` prompt-syntax activates the\n // skill of the same name (discovered from .fabro/skills/), which expands to\n // the full CVE-patching instructions. The skill self-discovers the target\n // repo from the cloned workspace via `gh repo view`, so no extra prompt\n // text is needed (and any extra text would be dropped: the skill body has\n // no {{user_input}} placeholder).\n patch [label=\"Patch CVEs\", prompt=\"/eng-patch-cves\"]\n\n start -> patch -> exit\n}\n",
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"workflow_slug": "patch-cves",
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"source_directory": "/Users/swerner/Development/os/fabro",
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"provenance": {
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"server": {
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"version": "0.278.0-nightly.0"
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"client": {
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"user_agent": "fabro-cli/0.267.0-nightly.0",
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"name": "fabro-cli",
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"subject": {
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"kind": "user",
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"identity": {
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"issuer": "https://github.com",
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"subject": "138379"
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"login": "swerner",
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"auth_method": "github",
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"avatar_url": "https://avatars.githubusercontent.com/u/138379?v=4"
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"manifest_blob": "809d42dc016060fadf368d97e2d144240b709fb9c028212f5e91beb02b2e284a",
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"git": {
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"origin_url": "https://github.com/fabro-sh/fabro",
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"branch": "add-patch-cves-workflow",
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"sha": "943dbe224a3a12cf993e443cc50a2e54f816cfa8",
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"dirty": "dirty",
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"push_outcome": {
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"type": "not_attempted"
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}
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}
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},
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"web_url": "https://fabro-testing.walleye-rainbow.ts.net/runs/01KWFA6TC0GC574MQMR4E0MV5D",
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"start": {
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"start_time": "2026-07-01T17:04:28.408788756Z",
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"run_branch": "fabro/run/01KWFA6TC0GC574MQMR4E0MV5D",
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"base_sha": "943dbe224a3a12cf993e443cc50a2e54f816cfa8"
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"status": {
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"kind": "running"
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"status_updated_at": "2026-07-01T17:04:28.408821158Z",
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{
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"seq": 21,
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"checkpoint": {
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"timestamp": "2026-07-01T17:04:29.974720466Z",
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"current_node": "start",
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"start"
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],
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"node_retries": {},
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"context_values": {
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"failure_class": "",
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"graph.model_stylesheet": "\n * { model: claude-opus-4-8; }\n ",
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"internal.retry_count.start": 0,
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"current_node": "start",
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"outcome": "succeeded",
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"internal.work_dir": "/home/daytona/workspace/fabro",
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"graph.rankdir": "LR",
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"graph.goal": "Triage GitHub Dependabot alerts and open verified dependency-patch PRs",
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"internal.fidelity": "compact",
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"internal.run_id": "01KWFA6TC0GC574MQMR4E0MV5D",
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"failure_signature": ""
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{
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"checkpoint": {
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"response.patch": "I've hit a hard blocker and cannot make progress on this task. Here's the precise diagnosis:\n\n## Blocker: no GitHub access + shell is unusable\n\nEvery shell invocation — even `echo hello` — fails before executing, with:\n\n```\nfailed to mint GitHub installation access token:\nGitHub App does not have access to repository fabro.\nUpdate the installation's repository permissions to include it.\n```\n\nThis is fatal for this specific goal, because \"triage Dependabot alerts and open verified patch PRs\" depends entirely on things I now can't do:\n\n| Step | Requires | Status |\n|------|----------|--------|\n| List Dependabot alerts | Authenticated GitHub Security API (`security_events: read`) | ❌ no token / no repo access |\n| Create branch, commit, push | `git` via shell + repo write | ❌ shell blocked, no access |\n| Open PRs | GitHub PR API (`pull_requests: write`) | ❌ no access |\n| Verify fixes (`cargo build`, `cargo nextest`) | shell | ❌ shell blocked |\n\nI also confirmed the `eng-patch-cves` skill definition is **not present in the working tree** (`grep` for `patch-cves`, `eng-patch`, `dependabot`, and `cve` finds nothing relevant), even though commit `943dbe224` claims to add it. So I can't recover the exact workflow steps locally either. `read_file` and `grep` work, but `shell` and recursive `glob` are broken in this environment.\n\n## What I did *not* do\n\nI did not fabricate any alerts, branches, or PRs. Nothing was changed.\n\n## What needs to happen to unblock\n\n1. **Grant the GitHub App installation access to the `fabro` repository** (the error message says this directly). The installation needs, at minimum:\n - `security_events: read` (to read Dependabot alerts)\n - `contents: write` + `pull_requests: write` (to push branches and open PRs)\n2. **Restore shell execution** — the token-minting failure is happening at the shell-tool wrapper layer and blocks *all* commands, not just GitHub ones. This looks like an infrastructure/credential configuration issue in the run environment rather than something I can fix from inside the workspace.\n\n## How would you like to proceed?\n\n- If you can fix the installation permissions and shell access, re-run `/eng-patch-cves` and I'll do the full triage-and-PR flow.\n- Alternatively, if you paste the current Dependabot alert list here, I can prepare the dependency-bump edits locally (e.g., `Cargo.toml` / `bun.lock` changes) so they're ready to push once access is restored — though I still couldn't verify builds without shell.\n\nWhich do you prefer?",
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"internal.retry_count.patch": 0,
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"internal.retry_count.start": 0,
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"last_stage": "patch",
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"internal.fidelity": "compact",
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"internal.work_dir": "/home/daytona/workspace/fabro",
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"graph.goal": "Triage GitHub Dependabot alerts and open verified dependency-patch PRs",
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"graph.model_stylesheet": "\n * { model: claude-opus-4-8; }\n ",
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"thread.start.current_node": "patch",
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"outcome": "succeeded",
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"current_node": "patch",
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"failure_class": "",
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"graph.rankdir": "LR",
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"internal.run_id": "01KWFA6TC0GC574MQMR4E0MV5D",
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"last_response": "I've hit a hard blocker and cannot make progress on this task. Here's the precise diagnosis:\n\n## Blocker: no GitHub access + shell is unusable\n\nEvery shell invocation — even `echo hello` — fails b",
|
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"failure_signature": ""
|
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},
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"node_outcomes": {
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"patch": {
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"status": "succeeded",
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"context_updates": {
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"response.patch": "I've hit a hard blocker and cannot make progress on this task. Here's the precise diagnosis:\n\n## Blocker: no GitHub access + shell is unusable\n\nEvery shell invocation — even `echo hello` — fails before executing, with:\n\n```\nfailed to mint GitHub installation access token:\nGitHub App does not have access to repository fabro.\nUpdate the installation's repository permissions to include it.\n```\n\nThis is fatal for this specific goal, because \"triage Dependabot alerts and open verified patch PRs\" depends entirely on things I now can't do:\n\n| Step | Requires | Status |\n|------|----------|--------|\n| List Dependabot alerts | Authenticated GitHub Security API (`security_events: read`) | ❌ no token / no repo access |\n| Create branch, commit, push | `git` via shell + repo write | ❌ shell blocked, no access |\n| Open PRs | GitHub PR API (`pull_requests: write`) | ❌ no access |\n| Verify fixes (`cargo build`, `cargo nextest`) | shell | ❌ shell blocked |\n\nI also confirmed the `eng-patch-cves` skill definition is **not present in the working tree** (`grep` for `patch-cves`, `eng-patch`, `dependabot`, and `cve` finds nothing relevant), even though commit `943dbe224` claims to add it. So I can't recover the exact workflow steps locally either. `read_file` and `grep` work, but `shell` and recursive `glob` are broken in this environment.\n\n## What I did *not* do\n\nI did not fabricate any alerts, branches, or PRs. Nothing was changed.\n\n## What needs to happen to unblock\n\n1. **Grant the GitHub App installation access to the `fabro` repository** (the error message says this directly). The installation needs, at minimum:\n - `security_events: read` (to read Dependabot alerts)\n - `contents: write` + `pull_requests: write` (to push branches and open PRs)\n2. **Restore shell execution** — the token-minting failure is happening at the shell-tool wrapper layer and blocks *all* commands, not just GitHub ones. This looks like an infrastructure/credential configuration issue in the run environment rather than something I can fix from inside the workspace.\n\n## How would you like to proceed?\n\n- If you can fix the installation permissions and shell access, re-run `/eng-patch-cves` and I'll do the full triage-and-PR flow.\n- Alternatively, if you paste the current Dependabot alert list here, I can prepare the dependency-bump edits locally (e.g., `Cargo.toml` / `bun.lock` changes) so they're ready to push once access is restored — though I still couldn't verify builds without shell.\n\nWhich do you prefer?",
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"last_stage": "patch",
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"last_response": "I've hit a hard blocker and cannot make progress on this task. Here's the precise diagnosis:\n\n## Blocker: no GitHub access + shell is unusable\n\nEvery shell invocation — even `echo hello` — fails b"
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},
|
|
"notes": "Stage completed: patch",
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"usage": {
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"input": {
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"usage": {
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"model": {
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"provider": "anthropic",
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"model_id": "claude-opus-4-8"
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},
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"tokens": {
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"workspace_root": "/home/daytona/workspace",
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"repos_root": "/home/daytona/repos",
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"primary_repo_path": "/home/daytona/repos/fabro-sh/fabro",
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"primary_repo_link": "/home/daytona/workspace/fabro"
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}
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},
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},
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"model": {
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},
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"agent_tools": [
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{
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"name": "AskUserQuestion",
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"description": "Ask the human one or more questions and wait for their answers before continuing this stage.",
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"source": {
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"kind": "native"
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},
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"category": "other",
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"invoked": false
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},
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{
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"name": "TaskCreate",
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"description": "Create pending tasks in the current session. Use concise subjects, descriptions, optional activeForm text, and metadata. Check TaskList first to avoid duplicate tasks.",
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"source": {
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"kind": "native"
|
|
},
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"category": "other",
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"invoked": false
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},
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{
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"name": "TaskGet",
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"description": "Get one task by taskId, including subject, status, description, owner, blockedBy, and blocks.",
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"source": {
|
|
"kind": "native"
|
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},
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|
"category": "other",
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"invoked": false
|
|
},
|
|
{
|
|
"name": "TaskList",
|
|
"description": "List tasks for the current session, including status, owner, and blocking dependencies. Use TaskGet with a taskId for full description and dependency details.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
|
"category": "other",
|
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"invoked": false
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},
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{
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"name": "TaskUpdate",
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"description": "Update an existing task's status, text, owner, metadata, or dependencies. Valid statuses are pending, in_progress, completed, and deleted. After completing a task, call TaskList to find newly unblocked work.",
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"source": {
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"kind": "native"
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},
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"category": "other",
|
|
"invoked": false
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},
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{
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"name": "close_agent",
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"description": "Close a running subagent that is no longer needed.",
|
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"source": {
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|
"kind": "native"
|
|
},
|
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"category": "subagent",
|
|
"invoked": false
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},
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{
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"name": "edit_file",
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"description": "Edit a file by replacing an exact string. The old_string must be an exact match and unique unless replace_all is true; include surrounding context when needed. Read the file first and preserve existing indentation.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
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"category": "write",
|
|
"invoked": false
|
|
},
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{
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"name": "glob",
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"description": "Find files by file names using a glob pattern. Use path to choose the search root. Prefer this over shell find or ls when locating repository files.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
|
"category": "read",
|
|
"invoked": true
|
|
},
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{
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"name": "grep",
|
|
"description": "Search file contents with a regex pattern. Use path to choose the search root, glob_filter to limit matching files, case_insensitive for case folding, and max_results to cap output.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
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"category": "read",
|
|
"invoked": true
|
|
},
|
|
{
|
|
"name": "read_file",
|
|
"description": "Read files before editing them. Returns line-numbered text and supports offset/limit for large files. Use this instead of shell cat, head, tail, or sed when inspecting repository files.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
|
"category": "read",
|
|
"invoked": true
|
|
},
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{
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|
"name": "send_input",
|
|
"description": "Send a follow-up message to a running subagent when new information or corrected instructions are needed.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
|
"category": "subagent",
|
|
"invoked": false
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|
},
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{
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"name": "shell",
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|
"description": "Execute shell commands for terminal operations, package managers, tests and builds. Use dedicated tools for file reads, file edits, filename searches, and content searches. Provide timeout_ms for long-running commands.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
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"category": "shell",
|
|
"invoked": true
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|
},
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{
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"name": "spawn_agent",
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|
"description": "Spawn a subagent for independent work or context isolation. Use it for tasks that can proceed separately, and avoid duplicating the same work in the parent session.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
|
|
"category": "subagent",
|
|
"invoked": false
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},
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{
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"name": "wait",
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|
"description": "Wait for a subagent to complete, then use the result to synthesize the outcome for the user.",
|
|
"source": {
|
|
"kind": "native"
|
|
},
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"category": "subagent",
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"invoked": false
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},
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{
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"name": "web_fetch",
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"description": "Fetch content from a URL that starts with http:// or https://. Pass a prompt to extract specific information or summarize the page; omit prompt to return the page content.",
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"source": {
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"kind": "native"
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},
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"category": "other",
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"invoked": false
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},
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{
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|
"name": "web_search",
|
|
"description": "Search the web using Brave Search when current external information is needed. Returns result titles, URLs, and descriptions; use web_fetch for a specific URL.",
|
|
"source": {
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|
"kind": "native"
|
|
},
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"category": "other",
|
|
"invoked": false
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},
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{
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"name": "write_file",
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"description": "Create new files, or overwrite an existing file only when replacement is explicitly intended. Prefer edit_file for targeted changes to existing files because write_file overwrites the full file content.",
|
|
"source": {
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|
"kind": "native"
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},
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"category": "write",
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"invoked": false
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}
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{
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"category": "system_prompt",
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{
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{
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{
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} |