Replace the sandbox-side fast-import metadata writer with an in-process git2 writer that builds metadata commits locally and pushes them with worker-side GitHub credentials. Keep sandbox git probing separate from metadata runtime state so checkpoint commits and metadata snapshots have independent lifecycles.
Tighten the live Daytona timeout coverage so it proves timeout is represented as a missing exit code with the timed_out termination state, not just any non-success result.
Represent command termination explicitly across sandbox results, events,
run projections, API types, and the run stage UI. This removes the fake
-1 exit code path for timeout/cancel and lets consumers tell cancelled
commands apart from timed-out commands.
Persist command stdout/stderr through scratch logs and finalized CAS refs, expose byte-offset tailing through the API, and render separate streaming panels in the web run view.
Resolve command output blob refs for execution-time consumers such as edge routing and retros, and make Docker streaming timeout/cancel drain output before returning.
GitHubAppCredentials now carries the configured app slug, so the "not
installed" error from the installation lookup links to the specific
app's install page (https://github.com/organizations/{owner}/settings/apps/{slug}/installations)
when known, instead of the generic org installations page. Threaded
through the server, workflow pipeline, and CLI runner.
Also treat docker like daytona for GitHub credential gating: both are
clone-based providers that need an installation token to fetch the repo,
so a docker run now requires credentials when daytona would.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
WorkdirStrategy was structurally redundant with the existing
LocalSandboxLayer.worktree_mode config — Local sandboxes always picked
LocalWorktree, everything else picked Cloud, and the LocalDirectory arm
was only ever reachable via the parallel checkpoints_disabled bool.
resolve_worktree_plan now reads worktree_mode directly: Cloud sandboxes
return None with a pre_run_git base sha; Local + Never returns None
with no base sha; Local + non-Never builds the WorktreePlan as before.
RunOptions.checkpoints_disabled drops out: the lifecycle gate becomes
has_run_branch (git: None alone is the canonical "no git checkpoints"
signal), and tests/fixtures stop carrying the field.
Switch Docker sandboxes from host bind mounts to per-run clone-based containers with structured run metadata, reconnect validation, archive-based file transfer, and Docker resource defaults.
Extend run config/API surfaces so Docker image and clone settings flow through manifests, server preflight, workflow startup, and generated clients.
Update docs and tests for the new default Docker provider path.
Add fabro-static::EnvVars as the shared registry for fixed environment variable names and migrate env reads, clap env bindings, and subprocess/test allowlists to use it.
Add clippy bans for raw std::env lookup APIs so future dynamic env facades must be documented explicitly.
Public functions now take ctx: &GitHubContext<'_> instead of by-value
GitHubContext<'_>. Matches the surrounding &str / &GitHubCredentials
convention. The type stays Copy so internal call sites that pass `ctx`
through still work without explicit reborrows.
Touched: 8 fabro-github functions + matching _with_client variants,
plus call sites in fabro-server, fabro-workflow, fabro-sandbox, and
fabro-github's integration + unit tests. Pure mechanical change.
Verified: workspace fmt clean, clippy --all-targets -D warnings clean,
cargo nextest run --workspace 4581 passed, 182 skipped.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
build_pr_body and maybe_open_pull_request now take the two things they
actually need — run_store: &RunStoreHandle and llm_source: &dyn
CredentialSource — instead of services: &RunServices. The workflow
PULL_REQUEST phase decomposes services at the callsite; the standalone
fabro pr create command passes its own directly.
This removes RunServices::for_cli, a stub constructor that fabricated
an emitter, sandbox, and provider just to satisfy the RunServices type
for two fields it cared about. The "leaky fake" is gone.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Two cleanups:
1. Threaded GitHubContext through the remaining fabro-github functions
that pair credentials with the API base URL: branch_exists,
resolve_clone_credentials, resolve_authenticated_url. Each loses its
trailing `base_url: &str` and replaces `creds: &GitHubCredentials`
with `ctx: GitHubContext<'_>`. is_app_public was skipped — it doesn't
take credentials. Updated production callers in fabro-sandbox/daytona
and fabro-workflow/sandbox_git, plus integration and unit tests.
2. Added OpenPullRequestRequest::from_run_state on the workflow struct.
Bundles the validated unpacked-from-RunState pieces into a draft PR
request with the server's defaults (`draft = true`, `auto_merge =
None`). Server's create_run_pull_request handler now calls the
constructor instead of inlining a 12-field struct literal — the
handler reads as a sequence of validations followed by one named
request build, not as plumbing.
Verified: workspace fmt clean, clippy --all-targets -D warnings clean,
cargo nextest run --workspace 4587 passed, 182 skipped.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Reconciles 61 origin commits (settings/config architectural reshape:
sparse layers → dense snapshots via builders, WorkflowSettings rename,
RunLayer/CliLayer moves, workflow builders, drop of public load wrappers)
with our LLM credential + RunServices refactor.
Our architecture preserved where it conflicted with origin's:
- RunServices / EngineServices stay (services.rs does not exist on
origin, which inlined the fields onto Initialized). Origin's new
Initialized fields (inputs, run_store, emitter, sandbox, registry,
env, dry_run, llm_client, provider) are absorbed through RunServices
and EngineServices instead of being inlined.
- llm_source: Arc<dyn CredentialSource> stays on AppState and
RunServices. Origin had a parallel ProviderCredentials struct in
fabro-server; our CredentialSource trait is more general and
complies with docs-internal/llm-client-resolution.md. Point-of-use
Client::from_source(...) rebuild preserves OAuth refresh.
- CommandContext.llm_source() uses self.storage_dir (origin's direct
field) instead of self.machine_settings (our side's field, removed
by origin).
- standalone_llm_source in fabro-agent drops the dead Result wrap and
uses fabro_config::user::default_storage_dir (origin's entrypoint)
instead of the removed load_settings_user/resolve_storage_root.
Absorbed from origin wholesale:
- SettingsLayer → WorkflowSettings rename everywhere
- Dense run settings: RunOptions.settings is WorkflowSettings, inputs
read via settings.run.inputs directly (not Option<RunLayer>)
- AppState.manifest_run_defaults / manifest_run_settings
- fabro_config re-exports of CliLayer/RunLayer/CliOutputLayer/etc.
- Lifecycle terminal-event changes, finalize dedup, list_events
consolidation — already brought in on the previous merge, kept
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Let callers decide whether to wrap in Arc. Also consolidates the two
state() fetches in build_pr_body into one.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Rename the last stale workflow test helpers and assertions that still used
pre-refactor checkpoint/retro file terminology, and update the retro docs
to describe the exported layout that now exists.
Implements the plan at
docs/plans/2026-04-20-003-refactor-unify-run-vocabulary-metadata-plan.md.
- Rename RunRecord to RunSpec and RunProjection.run to .spec everywhere
in Rust source, tests, helpers, test names, and error messages.
- Introduce SerializableProjection wrapper that trims bulky node text
fields (prompt, response, diff, stdout, stderr) for run.json snapshots.
- Collapse metadata-branch and CLI export to one RunDump::from_projection
builder emitting run.json + graph.fabro + stages/{stage_id}/... and
drop legacy top-level start/status/checkpoint/sandbox/retro/conclusion
split files.
- Replace MetadataStore::write_checkpoint with write_snapshot returning
the commit SHA; add read_run_projection/read_run_spec; demote
read_checkpoint/read_start_record to projection-field extractors.
- Switch fork, rewind, rebuild_meta, CLI rewind recovery, and retro
upload to read the unified projection layout.
- Add additive query methods on RunSpec and RunProjection.
Serde-level `alias = "spec"` shim dropped; `rename = "run"` retained to
keep the server API wire format stable per the plan's scope boundary.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Enable clippy::allow_attributes_without_reason at the workspace level.
Add concise, callsite-specific reasons to existing allow attributes, including generated code paths.
Phase 2/3 of the std::fs lint initiative (Phase 1 refactors landed in
commit 9d1c0d98c).
clippy.toml additions (appended to disallowed-methods):
std::fs::read, read_to_string, write, read_dir, copy, canonicalize
std::fs::File::open, File::create, File::create_new
std::fs::OpenOptions::open
File::options was deliberately excluded — it returns an OpenOptions
builder with no syscall. OpenOptions::open is where the block happens.
Non-blocking std::fs items (metadata, exists, create_dir_all, remove_*,
rename, and all std::fs types) remain legal.
Annotation policy (per updated plan):
- Mixed async/sync production source: function- or statement-scoped
#[expect(...)] so future accidental Tokio-path regressions in the
same file still fire.
- Fully-sync production source, test modules, integration tests,
build.rs: file-level #![expect(...)].
- Every #[expect] has a specific reason identifying the sync context.
Annotations added in ~90 files across the workspace. Notable narrow
placements: fabro-server server.rs current_server_target,
build_disk_usage_response, create_test_app_state_with_session_key;
fabro-server install.rs read_to_string rollback snapshot;
fabro-sandbox local.rs list_recursive; fabro-agent cli.rs FOLLOW-UP on
the JSON-stdout writer; fabro-llm providers/common.rs FOLLOW-UP for
load_file_as_base64 (7 translator call sites; revisit if file:// URL
usage grows).
build.rs blanket allows: fabro-api/build.rs, fabro-util/build.rs.
Pre-existing unrelated nightly-clippy warnings fixed under scope:
fabro-sandbox sandbox_spec.rs (unused_imports, unused_async),
reconnect.rs (unused_variables, unused_async).
Verified: cargo +nightly-2026-04-14 clippy --workspace --all-targets
-- -D warnings passes; fmt clean; 4129/4131 tests pass (two known
flakes under parallel nextest load, both pass individually and are
unrelated to this change).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- rust.yml: move clippy to nightly-2026-04-14 (was stable); also pin
fmt to the same nightly date for consistency. Both jobs now use the
dated nightly and the run-step uses `cargo +nightly-2026-04-14 ...`.
- AGENTS.md: update developer commands to match CI.
- Duration constructors: replace `Duration::from_secs(N * 60)` /
`Duration::from_millis(N * 1000)` with `from_mins` / `from_secs` /
`from_hours` across the workspace to satisfy clippy's new
`duration_suboptimal_units` lint. std::time::Duration only — custom
`settings::duration::Duration` sites kept on `from_secs`.
- map/unwrap_or cleanup: `.map(f).unwrap_or(v)` → `.map_or(v, f)`,
`.map(f).unwrap_or(false)` on Result → `.is_ok_and(f)`, per
`clippy::map_unwrap_or`.
- Misc lints: collapse nested `if` into match guard in
handler/llm/api.rs and run_state.rs; replace `columns.len() > 0`
with `!columns.is_empty()`; switch a pair of `sort_by` calls to
`sort_by_key`.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
The Daytona SDK client was created via Client::new() which only reads
DAYTONA_API_KEY from process env vars. When the key is stored in the
fabro vault (via `fabro secret set`), it was never forwarded to the SDK,
causing "api_key or jwt_token must be provided" errors.
Thread the API key from the vault through SandboxSpec, DaytonaSandbox,
and reconnect paths so the SDK receives it via new_with_config().
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Derive configured providers from env and vault when choosing default
models during run creation and materialization, and thread the resolved
run provider through execution handlers instead of recomputing it.
Also return a user-facing error when fabro-agent cannot infer a default
model for the selected provider.
When `disk_cache = true` in `[server.slatedb]`, Fabro enables SlateDB's
object-store cache at `<storage_root>/cache/slatedb`, caching raw S3
bytes on local disk to reduce read latency. All cache parameters use
SlateDB defaults (16 GB max, 4 MB parts). A warning is emitted if
enabled with `provider = "local"` since the cache adds overhead when
the object store is already on the local filesystem.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Move async subprocess paths to Tokio or spawn_blocking, document the
intentional synchronous std::process::Command callsites, and make CI run
Clippy with --all-targets so the guardrail applies to test code too.
Add a Clippy disallowed-methods guardrail for std::thread sleep/spawn
and convert the CLI polling paths to tokio::time::sleep so they no
longer block Tokio workers. Keep the intentional OS-thread sites with
narrow #[expect(...)] annotations that explain why std::thread is
required there.
Add the shared fabro-http transport crate and route hand-written HTTP client construction through it.
Use FABRO_HTTP_PROXY_POLICY for test no-proxy defaults, remove direct reqwest deps from ordinary crates, and add clippy bans for raw reqwest entrypoints.
Make gh_cli the default GitHub integration path across install, server,
workflow, and CLI surfaces while keeping app-based setup available when
explicitly selected.
Also defer GitHub reqwest client initialization until an HTTP request is
actually needed so missing-token and token-only paths do not trip workspace
test slow timeouts.
No production deployments exist, so there's no need for migration shims.
Remove all six backwards-compat type aliases (AgentError, SdkError,
CoreError, GraphvizError, StoreError, FabroError) and migrate ~880
callsites to use the canonical Error name directly within each crate,
or qualified imports (e.g., `use fabro_llm::Error as LlmError`) for
cross-crate references. Also fix a pre-existing absolute-path clippy
lint in fabro-server error.rs.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Add a shared MiniJinja-based template crate and migrate workflow prompts,
imports, hooks, and InterpString env references to the new {{ ... }}
syntax. This also threads typed run inputs through workflow rendering and
updates docs and tests to match the new templating model.
Resolve every clippy warning across the workspace when running with
--tests enabled. Previously only library code was lint-clean; test
code had accumulated issues that were invisible without --tests.
Fixes:
- redundant_closure_for_method_calls: |s| s.as_source() -> InterpString::as_source
(effective_settings, resolve_cli/root/server/features, run_event/record_serde,
materialize_run) — add InterpString imports where needed
- absolute_paths: inline fabro_types::settings::* paths -> use imports;
add #![allow(clippy::absolute_paths)] to fabro-cli and fabro-server
IT test harnesses (matching the existing pattern in integration.rs)
- bool_assert_comparison: assert_eq!(x, true) -> assert!(x)
- needless_raw_string_hashes: r#"..."# -> r"..." where no inner quotes
- field_reassign_with_default: mut + field assign -> struct literal with ..Default
- match_same_arms: merge Timeout | Disconnected arms in attach.rs
- needless_pass_by_value: signal_rx by ref in attach.rs
- unreadable_literal: 9999999999 -> 9_999_999_999
- default_trait_access: Default::default() -> BTreeMap::default()
- items_after_statements: move use to function top
- large_futures: allow in integration.rs test module (test-only, not prod)
- filter_map_bool_then: .filter_map(bool::then) -> .filter().map()
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Add the resolved run namespace, materialize persisted run defaults at create
time, and migrate the main workflow/server/CLI runtime paths off the old
run bridges.
Final mechanical pass: replaces every remaining
`fabro_types::settings::v2::*` import path with
`fabro_types::settings::*` (or the appropriate submodule) across 53
files in 10 crates, then deletes the transitional
`pub mod v2 { pub use super::*; }` alias from
`fabro-types/src/settings/mod.rs`.
No functional changes — all touches are `sed s|settings::v2::|settings::|g`
on import statements and fully-qualified type paths. The v2
namespace is now fully gone; the authoritative module path is
`fabro_types::settings::{accessors, cli, duration, features, interp,
model_ref, project, run, server, size, splice_array, tree, version,
workflow}`.
All 3,758 workspace tests pass. `cargo fmt --check --all` and
`cargo clippy --workspace -- -D warnings` are clean.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Deletes `fabro_types::Settings` — the ~65-field legacy flat view that
has been read-only since Stage 6.1 migrated all production read sites
to the v2 `SettingsFile`.
The last remaining readers all fall out of this commit:
- `fabro-server/src/demo/mod.rs` — the two demo settings fixtures
(`runs::settings()` and `settings::server_settings()`) are rewritten
as `serde_json::json!(...)` literals in the v2 `SettingsFile` shape.
They produce the same wire bytes as the real handlers now return, so
the demo page keeps rendering identically.
- `fabro-server/src/lib.rs::server_config` — drops the
`pub use fabro_types::Settings` re-export. Only the inner
`fabro_types::settings::server::*` module (still around until the
full runtime-type cleanup) remains.
- `fabro-server/tests/it/openapi_conformance.rs` — drops the
`server_settings_keys_match_openapi_spec` schema-drift test and all
of its legacy type imports. The new freeform-object DTO in the spec
(`type: object, additionalProperties: true`) has no `properties` to
diff against, so the test was already a no-op. Leaves
`all_spec_routes_are_routable` in place.
- `fabro-store/src/run_state.rs` — test fixture was building a
`Settings::default()` JSON payload; switched to `SettingsFile::default()`.
- `fabro-types/src/run_event/mod.rs` — two `EventBody::RunCreated`
round-trip tests were constructing `Settings::default()`; switched
to `SettingsFile::default()`.
- `fabro-workflow/tests/it/integration.rs` — the two
`hook_toml_*_parsing` tests decoded top-level `[[hooks]]` into a
legacy `Settings`. That parse path was removed in Stage 6.1; the
tests are deleted and replaced with a comment pointing at the v2
`settings::v2::tree::tests` fixtures that cover the same ground.
The legacy flat struct's module-level doc comment in
`settings/mod.rs` is updated to explain the transitional runtime
shapes that still live under `hook`, `mcp`, `project`, `run`,
`sandbox`, `server`, and `user` — a follow-up pass will either
promote them into their consumer crates or inline them at the call
sites so the whole `settings/*.rs` file set can go away and 6.5b
flattening can happen.
3,758 workspace tests pass. `cargo fmt --check --all` and
`cargo clippy --workspace -- -D warnings` are clean.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Extends the stage 6.1 WIP into a compiling state across the workspace.
Most crates and their unit/integration tests now read run.* / cli.* /
server.* v2 layers directly or through targeted bridge helpers.
Key moves in this commit:
fabro-server
- AppState.settings: Arc<RwLock<SettingsFile>> -- all helpers,
create_app_state_with_* factories, and tests updated.
- api_server_settings bridges SettingsFile -> legacy Settings via the
transitional bridge so /api/v1/settings still emits the legacy DTO
shape until Stage 6.6 replaces it with an allow-list DTO.
- get_system_info, get_system_df, get_github_repo, webhook startup, and
other read sites use the v2 accessors (github_app_id_str,
server_web, run_sandbox, run_model_*).
- web_auth.rs wraps each oauth / register / setup-status handler in a
local `bridged` helper that produces a legacy Settings from the v2
state, so the complex oauth mutation flow keeps working until its
Stage 6.6 rewrite.
- diagnostics::check_github_app reads via github_*_str accessors;
check_crypto bridges to the legacy shape inline.
- serve.rs: load_settings returns SettingsFile; apply_serve_overrides /
apply_runtime_settings mutate v2 subtrees directly; the config poll
loop and TLS/webhook startup use bridged() for legacy-shape reads.
- Tests in tests/it/{helpers,api/*,scenario/*} rewritten to construct
SettingsFile via ConfigLayer::parse or v2 struct literals.
fabro-workflow
- Every test fixture in pipeline/{finalize,initialize,pull_request,retro,
execute,persist}, operations/{create,rebuild_meta,start}, run_lookup,
runtime_store, handler/manager_loop, and tests/it/{integration,
daytona_integration}.rs now uses SettingsFile.
- start.rs hooks into the bridge helpers directly via use-imports.
- run_graph / run_graph_from_checkpoint / initialize / finalize /
pull_request calls are Box::pin'd to stay under clippy's large-future
threshold after the v2 tree brought RunOptions size up.
- resolve_run_settings writes resolved model/provider back into
run.model as InterpStrings; tests assert via run_model_*_str().
- preprocess_and_validate pulls vars from run_inputs_as_strings().
fabro-cli
- manifest_builder uses ConfigLayer.combine(...).into() to get a v2
SettingsFile for the manifest goal resolution path; file-based
goal_file handling is deferred to 6.6 when the manifest schema catches
up.
- runner::maybe_build_github_app_credentials and
tests/it/cmd/{create,runner}.rs read from v2 accessors.
- commands/config/mod.rs::merged_config returns SettingsFile; the
server-side retrieve_server_settings is bridged via a stopgap
legacy_settings_to_v2 shim that Stage 6.6 replaces.
- commands/store/dump.rs sample_run_record constructs SettingsFile.
fabro-store, fabro-checkpoint
- Test fixtures constructing RunRecord values updated to SettingsFile.
- fabro-checkpoint/src/author.rs stays (v2 From impl landed in a
previous additive commit).
fabro-config
- effective_settings.rs rewrite compiles and passes its unit tests.
- project::resolve_working_directory takes &SettingsFile.
Build status: `cargo build --workspace --tests`, `cargo clippy
--workspace -- -D warnings`, and `cargo fmt --check --all` all pass.
`cargo nextest run --workspace` passes 3,749 of 3,764 tests; the 15
remaining failures are fabro-cli integration tests whose snapshot +
TOML fixture shapes still need manual updates:
- cmd::config::* (seven tests): fixture TOML files still use v1
top-level keys and the snapshot outputs expect the legacy flat JSON
shape.
- cmd::inspect::* (four tests): run-record JSON snapshots embed the
flat Settings shape.
- cmd::run::dry_run_persists_event_history_in_store and
json_run_implies_auto_approve_for_human_gates: check `settings.dry_run
== Some(true)` directly on the v2 file; should assert
dry_run_enabled() instead.
- cmd::attach::attach_json_errors_without_prompting_for_human_input:
unrelated insta snapshot drift caused by the new SettingsFile JSON
shape leaking into an events-log snapshot.
Follow-up work for this stage also includes:
- Rewriting web_auth.rs register flow to emit v2 TOML directly and to
re-parse the written file back into state.settings so in-memory
state doesn't lag the on-disk file.
- Removing the legacy_settings_to_v2 shim in fabro-cli/config once
the server-side settings endpoint returns v2 shapes (Stage 6.6).
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
