From f83e1e797bc86d4e3a571b101497c3fd32b441c9 Mon Sep 17 00:00:00 2001 From: Fabro Date: Mon, 16 Mar 2026 08:05:09 -0400 Subject: [PATCH] checkpoint MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit ⚒️ Generated with [Fabro](https://fabro.sh) --- checkpoint.json | 56 ++++++++++++++-------- nodes/extract_patch/script_invocation.json | 5 ++ nodes/extract_patch/script_timing.json | 5 ++ nodes/extract_patch/status.json | 6 +++ nodes/solve/diff.patch | 7 +++ 5 files changed, 58 insertions(+), 21 deletions(-) create mode 100644 nodes/extract_patch/script_invocation.json create mode 100644 nodes/extract_patch/script_timing.json create mode 100644 nodes/extract_patch/status.json create mode 100644 nodes/solve/diff.patch diff --git a/checkpoint.json b/checkpoint.json index 2e81b17f0..b053ab180 100644 --- a/checkpoint.json +++ b/checkpoint.json @@ -1,12 +1,14 @@ { - "timestamp": "2026-03-16T12:05:06.301004Z", - "current_node": "solve", + "timestamp": "2026-03-16T12:05:09.190672Z", + "current_node": "extract_patch", "completed_nodes": [ "start", "setup", - "solve" + "solve", + "extract_patch" ], "node_retries": { + "extract_patch": 1, "setup": 1, "solve": 1, "start": 1 @@ -19,34 +21,37 @@ "failure_signature": "", "command.stderr": "", "response.solve": "The fix is minimal and clean. Here's a summary of what was changed:\n\n**File: `astropy/io/ascii/rst.py`**\n\nTwo changes in the `RST` class:\n\n1. **`__init__`**: Added `header_rows=None` parameter and passed it through to the parent `FixedWidth.__init__()`. This allows the RST writer to accept the `header_rows` keyword argument (e.g., `header_rows=[\"name\", \"unit\"]`).\n\n2. **`write`**: Changed the hardcoded `lines[1]` index to `lines[idx]` where `idx = len(self.header.header_rows)`. Previously it assumed the `===` separator line was always at index 1 (valid only for the default single header row `[\"name\"]`). With multiple header rows, the separator line shifts to a later index — it's always right after all header rows, so its index equals the number of header rows.", - "internal.thread_id": "setup", + "internal.thread_id": "solve", "graph.goal": "Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n", - "current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n\n## Context\n- failure_class: deterministic\n- failure_signature: setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.\n", + "current.preamble": "Goal: Please support header rows in RestructuredText output\n### Description\r\n\r\nIt would be great if the following would work:\r\n\r\n```Python\r\n>>> from astropy.table import QTable\r\n>>> import astropy.units as u\r\n>>> import sys\r\n>>> tbl = QTable({'wave': [350,950]*u.nm, 'response': [0.7, 1.2]*u.count})\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\")\r\n===== ========\r\n wave response\r\n===== ========\r\n350.0 0.7\r\n950.0 1.2\r\n===== ========\r\n>>> tbl.write(sys.stdout, format=\"ascii.fixed_width\", header_rows=[\"name\", \"unit\"])\r\n| wave | response |\r\n| nm | ct |\r\n| 350.0 | 0.7 |\r\n| 950.0 | 1.2 |\r\n>>> tbl.write(sys.stdout, format=\"ascii.rst\", header_rows=[\"name\", \"unit\"])\r\nTraceback (most recent call last):\r\n File \"\", line 1, in \r\n File \"/usr/lib/python3/dist-packages/astropy/table/connect.py\", line 129, in __call__\r\n self.registry.write(instance, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/registry/core.py\", line 369, in write\r\n return writer(data, *args, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/connect.py\", line 26, in io_write\r\n return write(table, filename, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 856, in write\r\n writer = get_writer(Writer=Writer, fast_writer=fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py\", line 800, in get_writer\r\n writer = core._get_writer(Writer, fast_writer, **kwargs)\r\n File \"/usr/lib/python3/dist-packages/astropy/io/ascii/core.py\", line 1719, in _get_writer\r\n writer = Writer(**writer_kwargs)\r\nTypeError: RST.__init__() got an unexpected keyword argument 'header_rows'\r\n```\r\n\r\n\r\n### Additional context\r\n\r\nRestructuredText output is a great way to fill autogenerated documentation with content, so having this flexible makes the life easier `:-)`\r\n\r\n\n\n\n## Completed stages\n- **setup**: fail\n - Script: `git clone https://github.com/astropy/astropy.git . && git checkout a5917978be39d13cd90b517e1de4e7a539ffaa48 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose`\n - Stdout:\n ```\n fatal: destination path '.' already exists and is not an empty directory.\n ```\n - Stderr: (empty)\n- **solve**: success\n - Model: claude-opus-4-6, 16.8k tokens in / 3.5k out\n - Files: /home/daytona/workspace/astropy/astropy/io/ascii/rst.py\n", "outcome": "success", - "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n", + "command.output": "diff --git a/astropy b/astropy\n--- a/astropy\n+++ b/astropy\n@@ -1 +1 @@\n-Subproject commit a5917978be39d13cd90b517e1de4e7a539ffaa48\n+Subproject commit a5917978be39d13cd90b517e1de4e7a539ffaa48-dirty\n", "internal.node_visit_count": 1, + "thread.solve.current_node": "extract_patch", "failure_class": "", + "internal.retry_count.extract_patch": 1, "internal.fidelity": "compact", "last_stage": "solve", "graph.rankdir": "LR", - "current_node": "solve", + "current_node": "extract_patch", "internal.retry_count.setup": 1, "thread.start.current_node": "setup", "thread.setup.current_node": "solve" }, "logs": [], "node_outcomes": { - "setup": { - "status": "fail", + "start": { + "status": "success", + "duration_ms": 0 + }, + "extract_patch": { + "status": "success", "context_updates": { - "command.stderr": "", - "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n" + "command.output": "diff --git a/astropy b/astropy\n--- a/astropy\n+++ b/astropy\n@@ -1 +1 @@\n-Subproject commit a5917978be39d13cd90b517e1de4e7a539ffaa48\n+Subproject commit a5917978be39d13cd90b517e1de4e7a539ffaa48-dirty\n", + "command.stderr": "" }, - "failure": { - "message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n", - "failure_class": "deterministic" - }, - "duration_ms": 86 + "notes": "Script completed: git diff", + "duration_ms": 95 }, "solve": { "status": "success", @@ -70,18 +75,27 @@ ], "duration_ms": 158714 }, - "start": { - "status": "success", - "duration_ms": 0 + "setup": { + "status": "fail", + "context_updates": { + "command.stderr": "", + "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n" + }, + "failure": { + "message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n", + "failure_class": "deterministic" + }, + "duration_ms": 86 } }, - "next_node_id": "extract_patch", + "next_node_id": "exit", "loop_failure_signatures": { "setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1 }, "node_visits": { - "start": 1, + "extract_patch": 1, "setup": 1, + "start": 1, "solve": 1 } } \ No newline at end of file diff --git a/nodes/extract_patch/script_invocation.json b/nodes/extract_patch/script_invocation.json new file mode 100644 index 000000000..6d29afc80 --- /dev/null +++ b/nodes/extract_patch/script_invocation.json @@ -0,0 +1,5 @@ +{ + "command": "git diff", + "language": "shell", + "timeout_ms": null +} \ No newline at end of file diff --git a/nodes/extract_patch/script_timing.json b/nodes/extract_patch/script_timing.json new file mode 100644 index 000000000..eb93c752e --- /dev/null +++ b/nodes/extract_patch/script_timing.json @@ -0,0 +1,5 @@ +{ + "duration_ms": 93, + "exit_code": 0, + "timed_out": false +} \ No newline at end of file diff --git a/nodes/extract_patch/status.json b/nodes/extract_patch/status.json new file mode 100644 index 000000000..3cc256b44 --- /dev/null +++ b/nodes/extract_patch/status.json @@ -0,0 +1,6 @@ +{ + "status": "success", + "notes": "Script completed: git diff", + "failure_reason": null, + "timestamp": "2026-03-16T12:05:09.189778+00:00" +} \ No newline at end of file diff --git a/nodes/solve/diff.patch b/nodes/solve/diff.patch new file mode 100644 index 000000000..60a3e4829 --- /dev/null +++ b/nodes/solve/diff.patch @@ -0,0 +1,7 @@ +diff --git a/astropy b/astropy +new file mode 160000 +index 0000000..a591797 +--- /dev/null ++++ b/astropy +@@ -0,0 +1 @@ ++Subproject commit a5917978be39d13cd90b517e1de4e7a539ffaa48