diff --git a/run.json b/run.json
index c7a1a8f57..ed98e3d5c 100644
--- a/run.json
+++ b/run.json
@@ -233,7 +233,7 @@
     "kind": "running"
   },
   "status_updated_at": "2026-05-11T21:09:21.589359Z",
-  "last_event_at": "2026-05-11T21:09:24.640605Z",
+  "last_event_at": "2026-05-11T21:09:32.367477Z",
   "pending_control": null,
   "checkpoints": [
     {
@@ -273,9 +273,9 @@
       "diff": {}
     },
     {
-      "seq": 0,
+      "seq": 27,
       "checkpoint": {
-        "timestamp": "2026-05-11T21:09:26.974594Z",
+        "timestamp": "2026-05-11T21:09:32.365019Z",
         "current_node": "list_prs",
         "completed_nodes": [
           "start",
@@ -283,15 +283,74 @@
         ],
         "node_retries": {},
         "context_values": {
+          "graph.goal": "List open PRs and issues via the gh CLI to verify GITHUB_TOKEN injection",
+          "internal.run_id": "01KRCDYDY9SBEZTZS6CN994FBZ",
+          "failure_signature": "",
+          "internal.thread_id": "start",
+          "graph.rankdir": "LR",
+          "internal.node_visit_count": 1,
+          "outcome": "succeeded",
+          "internal.fidelity": "compact",
+          "command.output": "blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2",
+          "failure_class": "",
+          "internal.work_dir": "/home/daytona/workspace",
+          "thread.start.current_node": "list_prs",
+          "internal.retry_count.start": 0,
           "current_node": "list_prs",
+          "internal.retry_count.list_prs": 0
+        },
+        "node_outcomes": {
+          "list_prs": {
+            "status": "succeeded",
+            "context_updates": {
+              "command.output": "blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2"
+            },
+            "notes": "Script completed: gh pr list --state open --limit 50 2>&1",
+            "usage": null
+          },
+          "start": {
+            "status": "succeeded",
+            "usage": null
+          }
+        },
+        "next_node_id": "list_issues",
+        "git_commit_sha": "4482d23f865f1a30425950136b466955adb11807",
+        "node_visits": {
+          "list_prs": 1,
+          "start": 1
+        }
+      },
+      "diff": {
+        "summary": {
+          "files_changed": 0,
+          "additions": 0,
+          "deletions": 0
+        }
+      }
+    },
+    {
+      "seq": 0,
+      "checkpoint": {
+        "timestamp": "2026-05-11T21:09:34.044009Z",
+        "current_node": "list_issues",
+        "completed_nodes": [
+          "start",
+          "list_prs",
+          "list_issues"
+        ],
+        "node_retries": {},
+        "context_values": {
+          "current_node": "list_issues",
           "internal.work_dir": "/home/daytona/workspace",
           "failure_signature": "",
           "failure_class": "",
           "internal.retry_count.start": 0,
           "internal.fidelity": "compact",
-          "internal.thread_id": "start",
+          "internal.thread_id": "list_prs",
           "thread.start.current_node": "list_prs",
-          "command.output": "blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2",
+          "thread.list_prs.current_node": "list_issues",
+          "internal.retry_count.list_issues": 0,
+          "command.output": "blob://sha256/3d2565e0daf356d49f952bd01acce0d9026c324e8c4a227ad3b19a6ee890ea01",
           "outcome": "succeeded",
           "graph.goal": "List open PRs and issues via the gh CLI to verify GITHUB_TOKEN injection",
           "internal.run_id": "01KRCDYDY9SBEZTZS6CN994FBZ",
@@ -300,10 +359,6 @@
           "internal.node_visit_count": 1
         },
         "node_outcomes": {
-          "start": {
-            "status": "succeeded",
-            "usage": null
-          },
           "list_prs": {
             "status": "succeeded",
             "context_updates": {
@@ -311,12 +366,25 @@
             },
             "notes": "Script completed: gh pr list --state open --limit 50 2>&1",
             "usage": null
+          },
+          "list_issues": {
+            "status": "succeeded",
+            "context_updates": {
+              "command.output": "blob://sha256/3d2565e0daf356d49f952bd01acce0d9026c324e8c4a227ad3b19a6ee890ea01"
+            },
+            "notes": "Script completed: gh issue list --state open --limit 50 2>&1",
+            "usage": null
+          },
+          "start": {
+            "status": "succeeded",
+            "usage": null
           }
         },
-        "next_node_id": "list_issues",
+        "next_node_id": "exit",
         "node_visits": {
           "start": 1,
-          "list_prs": 1
+          "list_prs": 1,
+          "list_issues": 1
         }
       },
       "diff": {}
@@ -339,6 +407,33 @@
   "superseded_by": null,
   "pending_interviews": {},
   "stages": {
+    "list_issues@1": {
+      "first_event_seq": 30,
+      "prompt": null,
+      "response": null,
+      "completion": null,
+      "provider_used": null,
+      "diff": null,
+      "script_invocation": {
+        "script": "gh issue list --state open --limit 50 2>&1",
+        "command": "exec 2>&1\ngh issue list --state open --limit 50 2>&1",
+        "language": "shell"
+      },
+      "script_timing": null,
+      "parallel_results": null,
+      "output": null,
+      "started_at": "2026-05-11T21:09:32.366910Z",
+      "handler": "command",
+      "usage": {
+        "input_tokens": 0,
+        "output_tokens": 0,
+        "total_tokens": 0,
+        "reasoning_tokens": 0,
+        "cache_read_tokens": 0,
+        "cache_write_tokens": 0
+      },
+      "state": "running"
+    },
     "start@1": {
       "first_event_seq": 16,
       "prompt": null,
@@ -372,7 +467,12 @@
       "first_event_seq": 20,
       "prompt": null,
       "response": null,
-      "completion": null,
+      "completion": {
+        "outcome": "succeeded",
+        "notes": "Script completed: gh pr list --state open --limit 50 2>&1",
+        "failure_reason": null,
+        "timestamp": "2026-05-11T21:09:26.973925Z"
+      },
       "provider_used": null,
       "diff": null,
       "script_invocation": {
@@ -380,11 +480,22 @@
         "command": "exec 2>&1\ngh pr list --state open --limit 50 2>&1",
         "language": "shell"
       },
-      "script_timing": null,
+      "script_timing": {
+        "output": "blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2",
+        "exit_code": 0,
+        "duration_ms": 1901,
+        "termination": "exited",
+        "output_bytes": 267,
+        "live_streaming": true
+      },
       "parallel_results": null,
       "output": null,
+      "output_bytes": 267,
+      "live_streaming": true,
+      "termination": "exited",
       "started_at": "2026-05-11T21:09:24.640265Z",
       "handler": "command",
+      "duration_ms": 2333,
       "usage": {
         "input_tokens": 0,
         "output_tokens": 0,
@@ -393,7 +504,7 @@
         "cache_read_tokens": 0,
         "cache_write_tokens": 0
       },
-      "state": "running"
+      "state": "succeeded"
     }
   }
 }
\ No newline at end of file
diff --git a/stages/002-list_prs@1/output.log b/stages/002-list_prs@1/output.log
new file mode 100644
index 000000000..86705a558
--- /dev/null
+++ b/stages/002-list_prs@1/output.log
@@ -0,0 +1 @@
+blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2
\ No newline at end of file
diff --git a/stages/002-list_prs@1/script_timing.json b/stages/002-list_prs@1/script_timing.json
new file mode 100644
index 000000000..07d4606e6
--- /dev/null
+++ b/stages/002-list_prs@1/script_timing.json
@@ -0,0 +1,8 @@
+{
+  "output": "blob://sha256/0b23fb241ded682323efecc2548d67e03b489a36049fcea78a8882a74b7b77e2",
+  "exit_code": 0,
+  "duration_ms": 1901,
+  "termination": "exited",
+  "output_bytes": 267,
+  "live_streaming": true
+}
\ No newline at end of file
diff --git a/stages/002-list_prs@1/status.json b/stages/002-list_prs@1/status.json
new file mode 100644
index 000000000..b4b1147da
--- /dev/null
+++ b/stages/002-list_prs@1/status.json
@@ -0,0 +1,6 @@
+{
+  "outcome": "succeeded",
+  "notes": "Script completed: gh pr list --state open --limit 50 2>&1",
+  "failure_reason": null,
+  "timestamp": "2026-05-11T21:09:26.973925Z"
+}
\ No newline at end of file
diff --git a/stages/003-list_issues@1/script_invocation.json b/stages/003-list_issues@1/script_invocation.json
new file mode 100644
index 000000000..16c17f480
--- /dev/null
+++ b/stages/003-list_issues@1/script_invocation.json
@@ -0,0 +1,5 @@
+{
+  "script": "gh issue list --state open --limit 50 2>&1",
+  "command": "exec 2>&1\ngh issue list --state open --limit 50 2>&1",
+  "language": "shell"
+}
\ No newline at end of file