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checkpoint

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Goal: # Plan: Inject GitHub App IAT into Sandbox as GITHUB_TOKEN
## Context
Workflow authors need `gh` CLI (and other GitHub-authenticated tools) to work inside sandboxes. Like GitHub Actions, we'll mint a short-lived Installation Access Token (IAT) from our GitHub App with user-declared permissions and inject it as `GITHUB_TOKEN`.
## Target UX
**workflow.toml:**
```toml
[github]
permissions = { contents = "write", pull_requests = "read", issues = "write" }
```
**fabro.toml (project-wide defaults):**
```toml
[github]
permissions = { contents = "read" }
```
Workflow-level `[github]` replaces project-level (not merged) — same as `[pull_request]`.
## Decisions
- **Token refresh:** Deferred. Mint once at startup for V1.
- **Preflight check:** Yes — mint during preflight to validate credentials/permissions.
- **Approach:** Red/green TDD.
## Changes
### 1. `run_config.rs` — Add `GitHubConfig` struct + wire through config
- New struct:
```rust
#[derive(Clone, Debug, Default, Deserialize, PartialEq, Serialize)]
pub struct GitHubConfig {
pub permissions: HashMap<String, String>,
}
```
- Add `pub github: Option<GitHubConfig>` to `WorkflowRunConfig` and `RunDefaults`
- In `apply_defaults()`: `if self.github.is_none() { self.github = defaults.github.clone(); }`
- In `merge_overlay()`: `if overlay.github.is_some() { self.github = overlay.github; }`
### 2. `project_config.rs` — Add `github` to `ProjectConfig`
- Add `pub github: Option<GitHubConfig>` field
- Add to `into_run_defaults()`: `github: self.github`
- Import `GitHubConfig` from run_config
### 3. `fabro-github/src/lib.rs` — Make `create_installation_access_token_with_permissions` pub
- Change `async fn` → `pub async fn` (line 114)
### 4. `run.rs` — Mint token and inject into sandbox env
- Add `mint_github_token()` helper
- After building `sandbox_env`, check `run_cfg.github.permissions`, mint + insert `GITHUB_TOKEN`
- Add preflight check that mints a token to validate
### 5. Tests (red/green TDD)
- `run_config.rs`: parse `[github]`, `apply_defaults` fallthrough, `merge_overlay`
- `project_config.rs`: parse `[github]` in fabro.toml, `into_run_defaults`
## Files
1. `lib/crates/fabro-workflows/src/cli/run_config.rs`
2. `lib/crates/fabro-workflows/src/cli/project_config.rs`
3. `lib/crates/fabro-github/src/lib.rs`
4. `lib/crates/fabro-workflows/src/cli/run.rs`
## Completed stages
- **toolchain**: success
- Script: `command -v cargo >/dev/null || { curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y && sudo ln -sf $HOME/.cargo/bin/* /usr/local/bin/; }; cargo --version 2>&1`
- Stdout:
```
cargo 1.94.0 (85eff7c80 2026-01-15)
```
- Stderr: (empty)
- **preflight_compile**: success
- Script: `cargo check 2>&1`
- Stdout:
```
Updating crates.io index
Updating git repository `https://github.com/brynary/daytona-sdk-rust`
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Compiling darling v0.21.3
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Compiling serde_spanned v0.6.9
Compiling toml_datetime v0.6.11
Compiling derive_more v2.1.1
Compiling libgit2-sys v0.18.3+1.9.2
Compiling memoffset v0.9.1
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Compiling nix v0.31.2
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Compiling phf_shared v0.13.1
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Checking thread_local v1.1.9
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Checking is_terminal_polyfill v1.70.2
Checking openssl-probe v0.1.6
Checking anstyle v1.0.13
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Compiling phf_generator v0.13.1
Checking crokey v1.4.0
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Compiling schemars_derive v1.2.1
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Compiling fabro-util v0.4.0 (/home/daytona/workspace/lib/crates/fabro-util)
Compiling darling v0.23.0
Checking lazy-regex v3.6.0
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Checking console v0.16.2
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Compiling match_token v0.35.0
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Compiling heck v0.5.0
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Compiling rmcp v0.15.0
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Compiling clap_derive v4.5.55
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Checking num v0.4.3
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Compiling rmcp-macros v0.15.0
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Compiling phf_macros v0.13.1
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Checking referencing v0.42.2
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Checking simple_asn1 v0.6.4
Checking xattr v1.6.1
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Compiling portable-atomic v1.13.1
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Compiling fabro-cli v0.4.0 (/home/daytona/workspace/lib/crates/fabro-cli)
Checking axum v0.8.8
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Checking jsonwebtoken v10.3.0
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Checking fabro-git-storage v0.4.0 (/home/daytona/workspace/lib/crates/fabro-git-storage)
Checking tokio-rustls v0.26.4
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Checking tokio-tungstenite v0.26.2
Checking reqwest-middleware v0.4.2
Checking jsonschema v0.42.2
Checking daytona-api-client v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking fabro-llm v0.4.0 (/home/daytona/workspace/lib/crates/fabro-llm)
Checking daytona-toolbox-client v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking fabro-github v0.4.0 (/home/daytona/workspace/lib/crates/fabro-github)
Checking fabro-devcontainer v0.4.0 (/home/daytona/workspace/lib/crates/fabro-devcontainer)
Checking fabro-openai-oauth v0.4.0 (/home/daytona/workspace/lib/crates/fabro-openai-oauth)
Checking fabro-mcp v0.4.0 (/home/daytona/workspace/lib/crates/fabro-mcp)
Checking fabro-agent v0.4.0 (/home/daytona/workspace/lib/crates/fabro-agent)
Checking daytona-sdk v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking fabro-ssh v0.4.0 (/home/daytona/workspace/lib/crates/fabro-ssh)
Checking fabro-workflows v0.4.0 (/home/daytona/workspace/lib/crates/fabro-workflows)
Checking fabro-config v0.4.0 (/home/daytona/workspace/lib/crates/fabro-config)
Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s
```
- Stderr: (empty)
- **preflight_lint**: success
- Script: `cargo clippy -- -D warnings 2>&1`
- Stdout:
```
Compiling fabro-util v0.4.0 (/home/daytona/workspace/lib/crates/fabro-util)
Checking fabro-mcp v0.4.0 (/home/daytona/workspace/lib/crates/fabro-mcp)
Checking fabro-tracker v0.4.0 (/home/daytona/workspace/lib/crates/fabro-tracker)
Checking fabro-devcontainer v0.4.0 (/home/daytona/workspace/lib/crates/fabro-devcontainer)
Checking fabro-github v0.4.0 (/home/daytona/workspace/lib/crates/fabro-github)
Checking fabro-git-storage v0.4.0 (/home/daytona/workspace/lib/crates/fabro-git-storage)
Compiling fabro-cli v0.4.0 (/home/daytona/workspace/lib/crates/fabro-cli)
Checking fabro-openai-oauth v0.4.0 (/home/daytona/workspace/lib/crates/fabro-openai-oauth)
Checking fabro-llm v0.4.0 (/home/daytona/workspace/lib/crates/fabro-llm)
Checking fabro-agent v0.4.0 (/home/daytona/workspace/lib/crates/fabro-agent)
Checking fabro-ssh v0.4.0 (/home/daytona/workspace/lib/crates/fabro-ssh)
Checking fabro-workflows v0.4.0 (/home/daytona/workspace/lib/crates/fabro-workflows)
Checking fabro-config v0.4.0 (/home/daytona/workspace/lib/crates/fabro-config)
Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.34s
```
- Stderr: (empty)
Read the plan file referenced in the goal and implement every step. Make all the code changes described in the plan.

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{
"mode": "agent",
"provider": "anthropic",
"model": "claude-opus-4-6"
}

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All checks pass. Let me provide a summary of all changes made:
## Summary of Changes
### 1. `lib/crates/fabro-workflows/src/cli/run_config.rs` — Add `GitHubConfig` struct + wire through config
- **New struct** `GitHubConfig` with `permissions: HashMap<String, String>` (after `AssetsConfig`)
- **Added** `pub github: Option<GitHubConfig>` to `WorkflowRunConfig`
- **Added** `pub github: Option<GitHubConfig>` to `RunDefaults`
- **`apply_defaults()`**: Added fallthrough: `if self.github.is_none() { self.github = defaults.github.clone(); }`
- **`merge_overlay()`**: Added replace: `if overlay.github.is_some() { self.github = overlay.github; }`
- **6 new tests**: `parse_toml_with_github_permissions`, `parse_toml_without_github_defaults_none`, `apply_defaults_github_inherited`, `apply_defaults_github_task_wins`, `merge_overlay_github_replaces`, `merge_overlay_github_none_keeps_base`
### 2. `lib/crates/fabro-workflows/src/cli/project_config.rs` — Add `github` to `ProjectConfig`
- **Added** `GitHubConfig` to import
- **Added** `pub github: Option<GitHubConfig>` field to `ProjectConfig`
- **Added** `github: self.github` to `into_run_defaults()`
- **2 new tests**: `parse_project_config_with_github`, `into_run_defaults_preserves_github`
### 3. `lib/crates/fabro-github/src/lib.rs` — Make function pub
- Changed `async fn create_installation_access_token_with_permissions` → `pub async fn`
### 4. `lib/crates/fabro-workflows/src/cli/run.rs` — Mint token and inject into sandbox env
- **New helper** `mint_github_token()` — signs JWT, resolves owner/repo from origin URL, requests scoped IAT
- **Token injection**: After building `sandbox_env`, checks `run_cfg.github` (falling back to `run_defaults.github`), mints token, inserts `GITHUB_TOKEN`
- **Preflight check**: New "GitHub Token" check that mints a token to validate credentials/permissions during `--preflight`
- Updated all `WorkflowRunConfig` struct literals in tests to include `github: None`
### 5. Supporting files
- **`docs/api-reference/fabro-api.yaml`**: Added `github` property to `ServerConfiguration` schema and new `GitHubConfiguration` schema
- **`lib/crates/fabro-api/src/demo/mod.rs`**: Added `github: None` to all `WorkflowRunConfig` struct literals
- **`lib/crates/fabro-api/tests/openapi_conformance.rs`**: Added `github: None` to `RunDefaults` struct literal

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{
"status": "success",
"notes": "Stage completed: implement",
"failure_reason": null,
"timestamp": "2026-03-15T19:19:01.649195+00:00"
}