checkpoint

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Goal: # Plan: Add safeguards to asset collection and checkpoint commits
## Context
Comparing our snapshot safeguards to Codex's ghost commits revealed gaps:
- Asset collection has no file count limit — a run matching thousands of small files will collect them all
- Asset collection excludes fewer directories than Codex (missing Python venvs, build dirs, caches)
- Checkpoint commits have no built-in exclude defaults — a fresh run with no config runs `git add -A` on everything that isn't gitignored
## Changes
### 1. Add MAX_FILE_COUNT to asset collection
**File:** `lib/crates/fabro-workflows/src/asset_snapshot.rs`
Add constant:
```rust
const MAX_FILE_COUNT: usize = 100;
```
In `select_files_to_collect()` (line 195), add count check alongside existing size budget check:
```rust
if selected.len() >= MAX_FILE_COUNT {
break;
}
```
Update existing test `select_files_enforces_total_budget` to verify the count limit doesn't interfere, and add a new test `select_files_enforces_count_limit`.
### 2. Expand EXCLUDE_DIRS for asset collection
**File:** `lib/crates/fabro-workflows/src/asset_snapshot.rs`
Add missing directories from Codex's list. Current:
```rust
const EXCLUDE_DIRS: &[&str] = &[
".git", "node_modules", ".pnpm-store", ".npm",
"target", ".next", "__pycache__",
];
```
New (adding 7 entries):
```rust
const EXCLUDE_DIRS: &[&str] = &[
".git", "node_modules", ".pnpm-store", ".npm",
"target", ".next", "__pycache__",
".venv", "venv", ".cache", ".tox",
".pytest_cache", ".mypy_cache", "dist",
];
```
Rationale for each addition:
- `.venv`, `venv` — Python virtual environments (thousands of files)
- `.cache` — generic cache dir (pip, pre-commit, etc.)
- `.tox` — Python tox testing tool virtualenvs
- `.pytest_cache`, `.mypy_cache` — Python tool caches
- `dist` — JS/TS build output
Not adding `build` or `env`/`.env` from Codex — `build` is too generic (many projects have legitimate `build/` dirs with test outputs), and `env`/`.env` could be dotenv config files.
### 3. Apply built-in excludes to checkpoint commits
**File:** `lib/crates/fabro-workflows/src/asset_snapshot.rs`
Extract `EXCLUDE_DIRS` into a public constant so it can be shared:
```rust
pub const EXCLUDE_DIRS: &[&str] = &[ ... ];
```
**File:** `lib/crates/fabro-workflows/src/engine.rs`
In `git_checkpoint()`, always include `EXCLUDE_DIRS` as pathspec excludes, merged with user-configured `exclude_globs`. Convert each `EXCLUDE_DIRS` entry to `**/dirname/**` glob format for git pathspec compatibility.
Change at line ~550:
```rust
let mut all_excludes: Vec<String> = asset_snapshot::EXCLUDE_DIRS
.iter()
.map(|d| format!("**/{d}/**"))
.collect();
all_excludes.extend(exclude_globs.iter().cloned());
all_excludes.sort();
all_excludes.dedup();
let add_cmd = if all_excludes.is_empty() {
format!("{GIT_REMOTE} add -A")
} else {
let pathspecs: Vec<String> = all_excludes
.iter()
.map(|g| format!("':(glob,exclude){g}'"))
.collect();
format!("{GIT_REMOTE} add -A -- . {}", pathspecs.join(" "))
};
```
This means checkpoint commits will always exclude the same directories as asset collection, plus any user-configured globs. The `add_cmd` branch for empty excludes becomes unreachable but can stay for clarity.
## Files to modify
1. `lib/crates/fabro-workflows/src/asset_snapshot.rs` — add MAX_FILE_COUNT, expand EXCLUDE_DIRS, make EXCLUDE_DIRS pub
2. `lib/crates/fabro-workflows/src/engine.rs` — merge built-in excludes into checkpoint git add
## Approach: Red/Green TDD
For each change, write the failing test first, then make it pass.
### Step 1: MAX_FILE_COUNT (asset collection)
**Red:** Add test `select_files_enforces_count_limit` in `asset_snapshot.rs` — create 150 small, recent files and assert `select_files_to_collect` returns at most 100. Run tests, verify it fails.
**Green:** Add `const MAX_FILE_COUNT: usize = 100;` and the count check in `select_files_to_collect()`. Run tests, verify it passes.
### Step 2: Expanded EXCLUDE_DIRS (asset collection)
**Red:** Add test `build_find_command_excludes_venv` that asserts the find command contains `.venv` in the prune clause. Run tests, verify it fails.
**Green:** Add the 7 new entries to `EXCLUDE_DIRS`. Run tests, verify it passes.
### Step 3: Built-in excludes for checkpoint commits
**Red:** Add test in `engine.rs` (or appropriate test module) that calls `git_checkpoint` with empty `exclude_globs` and asserts the `git add` command includes pathspec excludes for `EXCLUDE_DIRS` entries (e.g. `node_modules`). Run tests, verify it fails.
**Green:** Make `EXCLUDE_DIRS` pub, merge built-in excludes into the git add command in `git_checkpoint()`. Run tests, verify it passes.
### Final verification
1. `cargo test -p fabro-workflows`
2. `cargo clippy --workspace -- -D warnings`
3. `cargo fmt --check --all`
## Completed stages
- **toolchain**: success
- Script: `command -v cargo >/dev/null || { curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y && sudo ln -sf $HOME/.cargo/bin/* /usr/local/bin/; }; cargo --version 2>&1`
- Stdout:
```
cargo 1.94.0 (85eff7c80 2026-01-15)
```
- Stderr: (empty)
- **preflight_compile**: success
- Script: `cargo check 2>&1`
- Stdout:
```
Updating crates.io index
Updating git repository `https://github.com/brynary/daytona-sdk-rust`
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Compiling thiserror v2.0.18
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Compiling openssl v0.10.75
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Compiling cfg_aliases v0.2.1
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Compiling darling v0.21.3
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Compiling serde_spanned v0.6.9
Compiling toml_datetime v0.6.11
Checking derive_more v2.1.1
Compiling libgit2-sys v0.18.3+1.9.2
Compiling memoffset v0.9.1
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Compiling phf_shared v0.13.1
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Compiling serde_derive_internals v0.29.1
Checking tracing-log v0.2.0
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Checking anstyle v1.0.13
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Compiling schemars_derive v1.2.1
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Compiling phf_generator v0.13.1
Checking rand_chacha v0.3.1
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Compiling fabro-util v0.5.0 (/home/daytona/workspace/lib/crates/fabro-util)
Compiling darling v0.23.0
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Compiling match_token v0.35.0
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Compiling unicode-general-category v1.1.0
Compiling heck v0.5.0
Compiling rmcp v0.15.0
Checking borrow-or-share v0.2.4
Checking fluent-uri v0.4.1
Compiling clap_derive v4.5.55
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Checking schemars v1.2.1
Checking html5ever v0.35.0
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Compiling rmcp-macros v0.15.0
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Checking dirs v6.0.0
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Checking fabro-tracker v0.5.0 (/home/daytona/workspace/lib/crates/fabro-tracker)
Checking webpki-roots v0.26.11
Compiling asn1-rs-derive v0.5.1
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Checking jsonwebtoken v10.3.0
Checking pathdiff v0.2.3
Checking matchit v0.8.4
Checking open v5.3.3
Compiling fabro-cli v0.5.0 (/home/daytona/workspace/lib/crates/fabro-cli)
Checking axum v0.8.8
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Checking rustls-platform-verifier v0.6.2
Checking tungstenite v0.26.2
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Checking reqwest v0.12.28
Checking reqwest v0.13.2
Checking tokio-tungstenite v0.26.2
Checking reqwest-middleware v0.4.2
Checking daytona-toolbox-client v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking jsonschema v0.42.2
Checking daytona-api-client v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking fabro-github v0.5.0 (/home/daytona/workspace/lib/crates/fabro-github)
Checking fabro-devcontainer v0.5.0 (/home/daytona/workspace/lib/crates/fabro-devcontainer)
Checking fabro-openai-oauth v0.5.0 (/home/daytona/workspace/lib/crates/fabro-openai-oauth)
Checking git2 v0.20.4
Checking fabro-mcp v0.5.0 (/home/daytona/workspace/lib/crates/fabro-mcp)
Checking fabro-git-storage v0.5.0 (/home/daytona/workspace/lib/crates/fabro-git-storage)
Checking fabro-llm v0.5.0 (/home/daytona/workspace/lib/crates/fabro-llm)
Checking daytona-sdk v0.1.0 (https://github.com/brynary/daytona-sdk-rust?rev=06033ca#06033caa)
Checking fabro-agent v0.5.0 (/home/daytona/workspace/lib/crates/fabro-agent)
Checking fabro-ssh v0.5.0 (/home/daytona/workspace/lib/crates/fabro-ssh)
Checking fabro-workflows v0.5.0 (/home/daytona/workspace/lib/crates/fabro-workflows)
Checking fabro-config v0.5.0 (/home/daytona/workspace/lib/crates/fabro-config)
Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s
```
- Stderr: (empty)
- **preflight_lint**: success
- Script: `cargo clippy -- -D warnings 2>&1`
- Stdout:
```
Compiling fabro-util v0.5.0 (/home/daytona/workspace/lib/crates/fabro-util)
Checking fabro-mcp v0.5.0 (/home/daytona/workspace/lib/crates/fabro-mcp)
Checking fabro-tracker v0.5.0 (/home/daytona/workspace/lib/crates/fabro-tracker)
Checking fabro-devcontainer v0.5.0 (/home/daytona/workspace/lib/crates/fabro-devcontainer)
Checking fabro-github v0.5.0 (/home/daytona/workspace/lib/crates/fabro-github)
Checking fabro-git-storage v0.5.0 (/home/daytona/workspace/lib/crates/fabro-git-storage)
Compiling fabro-cli v0.5.0 (/home/daytona/workspace/lib/crates/fabro-cli)
Checking fabro-openai-oauth v0.5.0 (/home/daytona/workspace/lib/crates/fabro-openai-oauth)
Checking fabro-llm v0.5.0 (/home/daytona/workspace/lib/crates/fabro-llm)
Checking fabro-agent v0.5.0 (/home/daytona/workspace/lib/crates/fabro-agent)
Checking fabro-ssh v0.5.0 (/home/daytona/workspace/lib/crates/fabro-ssh)
Checking fabro-workflows v0.5.0 (/home/daytona/workspace/lib/crates/fabro-workflows)
Checking fabro-config v0.5.0 (/home/daytona/workspace/lib/crates/fabro-config)
Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.62s
```
- Stderr: (empty)
Read the plan file referenced in the goal and implement every step. Make all the code changes described in the plan.

View file

@ -0,0 +1,5 @@
{
"mode": "agent",
"provider": "anthropic",
"model": "claude-opus-4-6"
}

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All 179 tests pass, 0 failures. Let me provide a summary of all changes made:
## Summary of Changes
### 1. `lib/crates/fabro-workflows/src/asset_snapshot.rs`
- **Made `EXCLUDE_DIRS` public** (`const` → `pub const`) so it can be shared with `engine.rs`
- **Expanded `EXCLUDE_DIRS`** with 7 new entries: `.venv`, `venv`, `.cache`, `.tox`, `.pytest_cache`, `.mypy_cache`, `dist`
- **Added `MAX_FILE_COUNT` constant** (100) to limit the number of files collected
- **Added count check** in `select_files_to_collect()` — `if selected.len() >= MAX_FILE_COUNT { break; }` alongside the existing size budget check
- **Added test `select_files_enforces_count_limit`** — creates 150 small files, verifies only 100 are selected
- **Added test `build_find_command_excludes_venv`** — verifies all new directory names appear in the find command's prune clause
### 2. `lib/crates/fabro-workflows/src/engine.rs`
- **Merged built-in excludes into `git_checkpoint()`** — the `git add` command now always includes `EXCLUDE_DIRS` entries (converted to `**/dirname/**` glob format) merged with any user-configured `exclude_globs`, sorted and deduped
- **Added test `git_checkpoint_includes_builtin_excludes`** — sets up a real git repo with files in `node_modules/` and `.venv/`, calls `git_checkpoint` with empty user excludes, and verifies those directories were not staged
### Verification
- ✅ `cargo test -p fabro-workflows` — 179 passed, 0 failed
- ✅ `cargo clippy --workspace -- -D warnings` — clean
- ✅ `cargo fmt --check --all` — clean

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{
"status": "success",
"notes": "Stage completed: implement",
"failure_reason": null,
"timestamp": "2026-03-15T22:59:44.625453+00:00"
}