diff --git a/checkpoint.json b/checkpoint.json new file mode 100644 index 000000000..c7fdc7477 --- /dev/null +++ b/checkpoint.json @@ -0,0 +1,57 @@ +{ + "timestamp": "2026-03-16T12:02:27.187166Z", + "current_node": "setup", + "completed_nodes": [ + "start", + "setup" + ], + "node_retries": { + "start": 1, + "setup": 1 + }, + "context_values": { + "thread.start.current_node": "setup", + "internal.retry_count.setup": 1, + "internal.node_visit_count": 1, + "graph.goal": "ascii.qdp Table format assumes QDP commands are upper case\n### Description\n\nascii.qdp assumes that commands in a QDP file are upper case, for example, for errors they must be \"READ SERR 1 2\" whereas QDP itself is not case sensitive and case use \"read serr 1 2\". \r\n\r\nAs many QDP files are created by hand, the expectation that all commands be all-caps should be removed.\n\n### Expected behavior\n\nThe following qdp file should read into a `Table` with errors, rather than crashing.\r\n```\r\nread serr 1 2 \r\n1 0.5 1 0.5\r\n```\n\n### How to Reproduce\n\nCreate a QDP file:\r\n```\r\n> cat > test.qdp\r\nread serr 1 2 \r\n1 0.5 1 0.5\r\n\r\n\r\n > python\r\nPython 3.10.9 (main, Dec 7 2022, 02:03:23) [Clang 13.0.0 (clang-1300.0.29.30)] on darwin\r\nType \"help\", \"copyright\", \"credits\" or \"license\" for more information.\r\n>>> from astropy.table import Table\r\n>>> Table.read('test.qdp',format='ascii.qdp')\r\nWARNING: table_id not specified. Reading the first available table [astropy.io.ascii.qdp]\r\nTraceback (most recent call last):\r\n...\r\n raise ValueError(f'Unrecognized QDP line: {line}')\r\nValueError: Unrecognized QDP line: read serr 1 2\r\n```\r\n\r\nRunning \"qdp test.qdp\" works just fine.\r\n\n\n### Versions\n\nPython 3.10.9 (main, Dec 7 2022, 02:03:23) [Clang 13.0.0 (clang-1300.0.29.30)]\r\nastropy 5.1\r\nNumpy 1.24.1\r\npyerfa 2.0.0.1\r\nScipy 1.10.0\r\nMatplotlib 3.6.3\r\n\n\n\n\n## Additional Context\n\nWelcome to Astropy 👋 and thank you for your first issue!\n\nA project member will respond to you as soon as possible; in the meantime, please double-check the [guidelines for submitting issues](https://github.com/astropy/astropy/blob/main/CONTRIBUTING.md#reporting-issues) and make sure you've provided the requested details.\n\nGitHub issues in the Astropy repository are used to track bug reports and feature requests; If your issue poses a question about how to use Astropy, please instead raise your question in the [Astropy Discourse user forum](https://community.openastronomy.org/c/astropy/8) and close this issue.\n\nIf you feel that this issue has not been responded to in a timely manner, please send a message directly to the [development mailing list](http://groups.google.com/group/astropy-dev). If the issue is urgent or sensitive in nature (e.g., a security vulnerability) please send an e-mail directly to the private e-mail feedback@astropy.org.\nHuh, so we do have this format... https://docs.astropy.org/en/stable/io/ascii/index.html\r\n\r\n@taldcroft , you know anything about this?\nThis is the format I'm using, which has the issue: https://docs.astropy.org/en/stable/api/astropy.io.ascii.QDP.html\r\n\nThe issue is that the regex that searches for QDP commands is not case insensitive. \r\n\r\nThis attached patch fixes the issue, but I'm sure there's a better way of doing it.\r\n\r\n[qdp.patch](https://github.com/astropy/astropy/files/10667923/qdp.patch)\r\n\n@jak574 - the fix is probably as simple as that. Would you like to put in a bugfix PR?", + "internal.retry_count.start": 1, + "current.preamble": "Goal: ascii.qdp Table format assumes QDP commands are upper case\n### Description\n\nascii.qdp assumes that commands in a QDP file are upper case, for example, for errors they must be \"READ SERR 1 2\" whereas QDP itself is not case sensitive and case use \"read serr 1 2\". \r\n\r\nAs many QDP files are created by hand, the expectation that all commands be all-caps should be removed.\n\n### Expected behavior\n\nThe following qdp file should read into a `Table` with errors, rather than crashing.\r\n```\r\nread serr 1 2 \r\n1 0.5 1 0.5\r\n```\n\n### How to Reproduce\n\nCreate a QDP file:\r\n```\r\n> cat > test.qdp\r\nread serr 1 2 \r\n1 0.5 1 0.5\r\n\r\n\r\n > python\r\nPython 3.10.9 (main, Dec 7 2022, 02:03:23) [Clang 13.0.0 (clang-1300.0.29.30)] on darwin\r\nType \"help\", \"copyright\", \"credits\" or \"license\" for more information.\r\n>>> from astropy.table import Table\r\n>>> Table.read('test.qdp',format='ascii.qdp')\r\nWARNING: table_id not specified. Reading the first available table [astropy.io.ascii.qdp]\r\nTraceback (most recent call last):\r\n...\r\n raise ValueError(f'Unrecognized QDP line: {line}')\r\nValueError: Unrecognized QDP line: read serr 1 2\r\n```\r\n\r\nRunning \"qdp test.qdp\" works just fine.\r\n\n\n### Versions\n\nPython 3.10.9 (main, Dec 7 2022, 02:03:23) [Clang 13.0.0 (clang-1300.0.29.30)]\r\nastropy 5.1\r\nNumpy 1.24.1\r\npyerfa 2.0.0.1\r\nScipy 1.10.0\r\nMatplotlib 3.6.3\r\n\n\n\n\n## Additional Context\n\nWelcome to Astropy 👋 and thank you for your first issue!\n\nA project member will respond to you as soon as possible; in the meantime, please double-check the [guidelines for submitting issues](https://github.com/astropy/astropy/blob/main/CONTRIBUTING.md#reporting-issues) and make sure you've provided the requested details.\n\nGitHub issues in the Astropy repository are used to track bug reports and feature requests; If your issue poses a question about how to use Astropy, please instead raise your question in the [Astropy Discourse user forum](https://community.openastronomy.org/c/astropy/8) and close this issue.\n\nIf you feel that this issue has not been responded to in a timely manner, please send a message directly to the [development mailing list](http://groups.google.com/group/astropy-dev). If the issue is urgent or sensitive in nature (e.g., a security vulnerability) please send an e-mail directly to the private e-mail feedback@astropy.org.\nHuh, so we do have this format... https://docs.astropy.org/en/stable/io/ascii/index.html\r\n\r\n@taldcroft , you know anything about this?\nThis is the format I'm using, which has the issue: https://docs.astropy.org/en/stable/api/astropy.io.ascii.QDP.html\r\n\nThe issue is that the regex that searches for QDP commands is not case insensitive. \r\n\r\nThis attached patch fixes the issue, but I'm sure there's a better way of doing it.\r\n\r\n[qdp.patch](https://github.com/astropy/astropy/files/10667923/qdp.patch)\r\n\n@jak574 - the fix is probably as simple as that. Would you like to put in a bugfix PR?\n", + "outcome": "fail", + "internal.thread_id": "start", + "internal.fidelity": "compact", + "internal.run_id": "01KKV8D5GS2X8B3R6MJ7BEP47B", + "graph.rankdir": "LR", + "current_node": "setup", + "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n", + "command.stderr": "", + "failure_class": "deterministic", + "failure_signature": "setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory." + }, + "logs": [], + "node_outcomes": { + "setup": { + "status": "fail", + "context_updates": { + "command.stderr": "", + "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n" + }, + "failure": { + "message": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n", + "failure_class": "deterministic" + }, + "duration_ms": 50 + }, + "start": { + "status": "success", + "duration_ms": 0 + } + }, + "next_node_id": "solve", + "loop_failure_signatures": { + "setup|deterministic|script failed with exit code: ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1 + }, + "node_visits": { + "start": 1, + "setup": 1 + } +} \ No newline at end of file diff --git a/nodes/setup/script_invocation.json b/nodes/setup/script_invocation.json new file mode 100644 index 000000000..117aebe2f --- /dev/null +++ b/nodes/setup/script_invocation.json @@ -0,0 +1,5 @@ +{ + "command": "git clone https://github.com/astropy/astropy.git . && git checkout 7269fa3e33e8d02485a647da91a5a2a60a06af61 && sed -i 's/requires = \\[\"setuptools\",/requires = \\[\"setuptools==68.0.0\",/' pyproject.toml && python -m pip install -e .[test] --verbose", + "language": "shell", + "timeout_ms": null +} \ No newline at end of file diff --git a/nodes/setup/script_timing.json b/nodes/setup/script_timing.json new file mode 100644 index 000000000..41ec9ff87 --- /dev/null +++ b/nodes/setup/script_timing.json @@ -0,0 +1,5 @@ +{ + "duration_ms": 50, + "exit_code": 128, + "timed_out": false +} \ No newline at end of file diff --git a/nodes/setup/status.json b/nodes/setup/status.json new file mode 100644 index 000000000..1d5ccf7a2 --- /dev/null +++ b/nodes/setup/status.json @@ -0,0 +1,6 @@ +{ + "status": "fail", + "notes": null, + "failure_reason": "Script failed with exit code: 128\n\n## stdout\nfatal: destination path '.' already exists and is not an empty directory.\n", + "timestamp": "2026-03-16T12:02:27.186933+00:00" +} \ No newline at end of file diff --git a/nodes/start/status.json b/nodes/start/status.json new file mode 100644 index 000000000..780871362 --- /dev/null +++ b/nodes/start/status.json @@ -0,0 +1,6 @@ +{ + "status": "success", + "notes": null, + "failure_reason": null, + "timestamp": "2026-03-16T12:02:27.135226+00:00" +} \ No newline at end of file