checkpoint

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checkpoint.json

@@ -1,33 +1,61 @@
 {
-  "timestamp": "2026-03-16T05:36:22.009134Z",
-  "current_node": "setup",
+  "timestamp": "2026-03-16T05:39:23.800410Z",
+  "current_node": "solve",
   "completed_nodes": [
     "start",
-    "setup"
+    "setup",
+    "solve"
   ],
   "node_retries": {
+    "solve": 1,
     "start": 1,
     "setup": 1
   },
   "context_values": {
+    "last_response": "Perfect! Let me review the complete flow of the fix:\n\n1. A setup command like `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .` is executed\n2. If",
+    "response.solve": "Perfect! Let me review the complete flow of the fix:\n\n1. A setup command like `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .` is executed\n2. If it fails with an exit code != 0 AND the stderr contains \"not an empty directory\" or \"already exists and is not an empty\" AND the command contains \"git clone\"\n3. We call `construct_git_clone_fallback()` to create a modified command\n4. The modified command `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .` is executed\n5. If this succeeds, the setup continues; if not, we report the error\n\nThis is exactly what we need! The fix handles the \"directory not empty\" error gracefully by using an alternative git initialization approach.\n\nNow let me write a summary of the changes made:\n\n## Summary of Changes\n\nI've implemented a fix for the issue where setup commands that include `git clone` into the current directory (`.`) fail when the directory already contains files (e.g., workflow configuration files, initialization files, etc.).\n\n### Changes Made:\n\n1. **Added `construct_git_clone_fallback()` function** in `/home/daytona/workspace/lib/crates/fabro-workflows/src/cli/run.rs`:\n   - Parses git clone commands to extract the repository URL and destination directory\n   - Converts `git clone <url> .` into `git init && git remote add origin <url> && git fetch origin`\n   - Preserves any additional commands in compound commands (e.g., `&& git checkout <commit>`)\n   - Only applies the fallback when cloning into the current directory\n\n2. **Added `quote_shell_arg()` helper function** to properly quote shell arguments using the existing `shell_quote` utility\n\n3. **Enhanced setup command execution** in `run_command()`:\n   - When a setup command fails with the \"directory not empty\" error from git clone\n   - Automatically retries using the fallback approach instead of reporting failure\n   - Logs the retry attempt for debugging\n\n4. **Added comprehensive tests** to verify:\n   - Simple git clone commands are converted correctly\n   - Compound commands with additional git/python operations are preserved\n   - Commands cloning to non-current directories are not affected\n   - Non-git-clone commands are not affected\n\n### How it works:\n\nWhen a workflow setup command tries to clone a repository into a non-empty directory:\n1. **Original command fails**: `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .`\n   - Error: \"fatal: destination path '.' already exists and is not an empty directory.\"\n\n2. **Fallback command executes**: `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .`\n   - Initializes a new git repository in the current directory\n   - Adds the remote origin\n   - Fetches all branches and commits\n   - Continues with the original checkout and setup commands\n\nThis approach matches the pattern already used in the SSH and exe.dev sandboxes, ensuring consistency across all sandbox providers.",
     "command.output": "fatal: destination path '.' already exists and is not an empty directory.\n",
     "internal.node_visit_count": 1,
     "internal.fidelity": "compact",
+    "last_stage": "solve",
     "internal.retry_count.start": 1,
     "graph.rankdir": "LR",
-    "failure_signature": "setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.",
+    "failure_signature": "",
     "command.stderr": "",
     "internal.retry_count.setup": 1,
-    "current_node": "setup",
+    "current_node": "solve",
     "internal.run_id": "01KKTJA7N831P0AH7DPCMNXPR1",
-    "current.preamble": "Goal: \n",
-    "outcome": "fail",
+    "current.preamble": "Goal: \n\n## Completed stages\n- **setup**: fail\n  - Script: `git clone https://github.com/django/django.git . && git checkout 466920f6d726eee90d5566e0a9948e92b33a122e && python -m pip install -e .`\n  - Stdout:\n    ```\n    fatal: destination path '.' already exists and is not an empty directory.\n    ```\n  - Stderr: (empty)\n\n## Context\n- failure_class: deterministic\n- failure_signature: setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.\n",
+    "outcome": "success",
+    "thread.setup.current_node": "solve",
     "thread.start.current_node": "setup",
-    "failure_class": "deterministic",
-    "internal.thread_id": "start"
+    "internal.retry_count.solve": 1,
+    "failure_class": "",
+    "internal.thread_id": "setup"
   },
   "logs": [],
   "node_outcomes": {
+    "solve": {
+      "status": "success",
+      "context_updates": {
+        "last_stage": "solve",
+        "last_response": "Perfect! Let me review the complete flow of the fix:\n\n1. A setup command like `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .` is executed\n2. If",
+        "response.solve": "Perfect! Let me review the complete flow of the fix:\n\n1. A setup command like `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .` is executed\n2. If it fails with an exit code != 0 AND the stderr contains \"not an empty directory\" or \"already exists and is not an empty\" AND the command contains \"git clone\"\n3. We call `construct_git_clone_fallback()` to create a modified command\n4. The modified command `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .` is executed\n5. If this succeeds, the setup continues; if not, we report the error\n\nThis is exactly what we need! The fix handles the \"directory not empty\" error gracefully by using an alternative git initialization approach.\n\nNow let me write a summary of the changes made:\n\n## Summary of Changes\n\nI've implemented a fix for the issue where setup commands that include `git clone` into the current directory (`.`) fail when the directory already contains files (e.g., workflow configuration files, initialization files, etc.).\n\n### Changes Made:\n\n1. **Added `construct_git_clone_fallback()` function** in `/home/daytona/workspace/lib/crates/fabro-workflows/src/cli/run.rs`:\n   - Parses git clone commands to extract the repository URL and destination directory\n   - Converts `git clone <url> .` into `git init && git remote add origin <url> && git fetch origin`\n   - Preserves any additional commands in compound commands (e.g., `&& git checkout <commit>`)\n   - Only applies the fallback when cloning into the current directory\n\n2. **Added `quote_shell_arg()` helper function** to properly quote shell arguments using the existing `shell_quote` utility\n\n3. **Enhanced setup command execution** in `run_command()`:\n   - When a setup command fails with the \"directory not empty\" error from git clone\n   - Automatically retries using the fallback approach instead of reporting failure\n   - Logs the retry attempt for debugging\n\n4. **Added comprehensive tests** to verify:\n   - Simple git clone commands are converted correctly\n   - Compound commands with additional git/python operations are preserved\n   - Commands cloning to non-current directories are not affected\n   - Non-git-clone commands are not affected\n\n### How it works:\n\nWhen a workflow setup command tries to clone a repository into a non-empty directory:\n1. **Original command fails**: `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .`\n   - Error: \"fatal: destination path '.' already exists and is not an empty directory.\"\n\n2. **Fallback command executes**: `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .`\n   - Initializes a new git repository in the current directory\n   - Adds the remote origin\n   - Fetches all branches and commits\n   - Continues with the original checkout and setup commands\n\nThis approach matches the pattern already used in the SSH and exe.dev sandboxes, ensuring consistency across all sandbox providers."
+      },
+      "notes": "Stage completed: solve",
+      "usage": {
+        "model": "claude-haiku-4-5",
+        "input_tokens": 60092,
+        "output_tokens": 18222,
+        "cache_read_tokens": 2711334,
+        "cache_write_tokens": 85167,
+        "cost": 0.1209616
+      },
+      "files_touched": [
+        "/home/daytona/workspace/lib/crates/fabro-workflows/src/cli/run.rs"
+      ],
+      "duration_ms": 179679
+    },
     "setup": {
       "status": "fail",
       "context_updates": {
@@ -45,12 +73,13 @@
       "duration_ms": 0
     }
   },
-  "next_node_id": "solve",
+  "next_node_id": "extract_patch",
   "loop_failure_signatures": {
     "setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.": 1
   },
   "node_visits": {
     "start": 1,
-    "setup": 1
+    "setup": 1,
+    "solve": 1
   }
 }

nodes/solve/prompt.md

@@ -0,0 +1,17 @@
+Goal: 
+
+## Completed stages
+- **setup**: fail
+  - Script: `git clone https://github.com/django/django.git . && git checkout 466920f6d726eee90d5566e0a9948e92b33a122e && python -m pip install -e .`
+  - Stdout:
+    ```
+    fatal: destination path '.' already exists and is not an empty directory.
+    ```
+  - Stderr: (empty)
+
+## Context
+- failure_class: deterministic
+- failure_signature: setup|deterministic|script failed with exit code: <n> ## stdout fatal: destination path '.' already exists and is not an empty directory.
+
+
+Fix this GitHub issue in the repository. Make the minimal code change needed.

nodes/solve/provider_used.json

@@ -0,0 +1,5 @@
+{
+  "mode": "agent",
+  "provider": "anthropic",
+  "model": "claude-haiku-4-5"
+}

nodes/solve/response.md

@@ -0,0 +1,50 @@
+Perfect! Let me review the complete flow of the fix:
+
+1. A setup command like `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .` is executed
+2. If it fails with an exit code != 0 AND the stderr contains "not an empty directory" or "already exists and is not an empty" AND the command contains "git clone"
+3. We call `construct_git_clone_fallback()` to create a modified command
+4. The modified command `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .` is executed
+5. If this succeeds, the setup continues; if not, we report the error
+
+This is exactly what we need! The fix handles the "directory not empty" error gracefully by using an alternative git initialization approach.
+
+Now let me write a summary of the changes made:
+
+## Summary of Changes
+
+I've implemented a fix for the issue where setup commands that include `git clone` into the current directory (`.`) fail when the directory already contains files (e.g., workflow configuration files, initialization files, etc.).
+
+### Changes Made:
+
+1. **Added `construct_git_clone_fallback()` function** in `/home/daytona/workspace/lib/crates/fabro-workflows/src/cli/run.rs`:
+   - Parses git clone commands to extract the repository URL and destination directory
+   - Converts `git clone <url> .` into `git init && git remote add origin <url> && git fetch origin`
+   - Preserves any additional commands in compound commands (e.g., `&& git checkout <commit>`)
+   - Only applies the fallback when cloning into the current directory
+
+2. **Added `quote_shell_arg()` helper function** to properly quote shell arguments using the existing `shell_quote` utility
+
+3. **Enhanced setup command execution** in `run_command()`:
+   - When a setup command fails with the "directory not empty" error from git clone
+   - Automatically retries using the fallback approach instead of reporting failure
+   - Logs the retry attempt for debugging
+
+4. **Added comprehensive tests** to verify:
+   - Simple git clone commands are converted correctly
+   - Compound commands with additional git/python operations are preserved
+   - Commands cloning to non-current directories are not affected
+   - Non-git-clone commands are not affected
+
+### How it works:
+
+When a workflow setup command tries to clone a repository into a non-empty directory:
+1. **Original command fails**: `git clone https://github.com/django/django.git . && git checkout 466920f && python -m pip install -e .`
+   - Error: "fatal: destination path '.' already exists and is not an empty directory."
+
+2. **Fallback command executes**: `git init && git remote add origin https://github.com/django/django.git && git fetch origin && git checkout 466920f && python -m pip install -e .`
+   - Initializes a new git repository in the current directory
+   - Adds the remote origin
+   - Fetches all branches and commits
+   - Continues with the original checkout and setup commands
+
+This approach matches the pattern already used in the SSH and exe.dev sandboxes, ensuring consistency across all sandbox providers.

nodes/solve/status.json

@@ -0,0 +1,6 @@
+{
+  "status": "success",
+  "notes": "Stage completed: solve",
+  "failure_reason": null,
+  "timestamp": "2026-03-16T05:39:23.800245+00:00"
+}