Commit graph

8 commits

Author SHA1 Message Date
Claude
7405298b4b
fix: resolve the actionable reported issues (#954, #949, #933, #931, #969, #968, #924, #885)
- #954: strip non-spec source/attribution keys from all 39 plugin.json
  manifests so Claude Code's validator accepts them; metadata preserved in
  new .claude-plugin/authoring-notes.json sidecars; check_plugin_json.py now
  hard-fails manifests carrying those keys and sanity-checks the sidecar;
  CLAUDE.md ClawHub schema section updated to the new rule.
- #949: move the c-level-agents plugin out of c-level-advisor/ to a
  top-level directory so the two marketplace sources no longer overlap;
  updated marketplace.json source, homepage, descriptions, all
  cross-references, docs, harness manifest, mirror-tree symlinks/indexes,
  and rebased the moved files' relative links; domain counters trued up
  (18 -> 19 domains).
- #933: replace dead links to the gitignored maintainer-local megaprompts/
  tree with annotated plain-text references (44 files: SKILL.md, READMEs,
  agents, commands).
- #931: DynamoDB on-demand pricing updated to post-Nov-2024 rates
  ($0.625/M writes, $0.125/M strongly consistent reads).
- #969: skill_security_auditor.py and the three dossier scripts reconfigure
  stdout/stderr to UTF-8 (errors=replace) so legacy Windows codepages no
  longer crash at print time; PYTHONUTF8=1 documented.
- #968: Windows Notes section in INSTALLATION.md + README pointer for the
  core.symlinks mirror-tree checkout caveat.
- #924/#885 residuals: hook commands quote "${CLAUDE_PLUGIN_ROOT}" paths in
  all plugin hooks.json/settings.json (space-safe roots); removed the stale
  pre-rename status/review mirror symlinks and index entries left over from
  the memory-status/memory-review rename.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Qgc6RYXWJPr5oW9DHU7zR4
2026-08-21 05:47:37 +00:00
Claude
11415a614e
feat(research): free keyless search lane + routing guard (audit PR-4)
litreview: paid Consensus MCP dependency converted to an optional enhancement
lane; PubMed E-utilities + OpenAlex (both keyless) are now the default search
lane with exact URL templates and JSON field maps; brittle plan-tier detection
(marketing-copy parsing) deleted in favor of a one-line runtime availability
check; new stdlib scripts/free_search.py (--source pubmed|openalex|both,
--json, graceful exit 2 offline). Fixes the audit OPTIMIZE finding and brings
the skill into compliance with ClawHub publishing rule #3 (no paid-service
dependencies). Mirrored across README/agent/command/plugin.json/references.

research orchestrator: bare-noun signals (funding/fda/patent/grant) no longer
silent-route — single bare-noun match now returns ask + recommended specialist;
silent-route requires >=2 signals or one strong multi-word phrase (SKILL.md and
classifier.py updated in lockstep, sync verified programmatically); the
un-executable 'auto-proceeds after 5s' affordance removed everywhere; SKILL.md
trimmed 319 -> 247 lines preserving routing tables and transparency protocol.

Live classifier proof: CRISPR meta-analysis -> litreview (silent); Acme
due-diligence -> dossier (silent); 'research Microsoft' -> fallback; bare
'funding'/'fda' -> ask (recommended: grants).

Counters reconciled (+1 tool = 580); gates green: paths 0, dual-publish 0,
smoke 584/584, counters match.

https://claude.ai/code/session_019AJddAL1NADWMXsy1qNPQF
2026-06-12 05:33:50 +00:00
Claude
aecfb8e0bb
feat(skills): wave-3 optimization — domain overhauls per newgen audit
marketing: context-file unified on .claude/product-marketing-context.md;
ai-seo merged into aeo (2 new cited references, folder deleted); index +
marketing-ops routers rebuilt honestly; 24 orphan scripts wired with exact
CLIs; prompt-engineer-toolkit stub references rewritten with cited content;
Meta 20%-rule + GA4 terminology freshness; 5 zips + 3 planning docs removed

c-level-advisor: role registry 9->14 across all 6 routing surfaces; decision
memory unified on ~/.claude/decisions/{raw,approved}; onboarding schema
canonicalized; 12 phantom commands resolved; index repaired (33/37/68 real
counts); ma-playbook sourced + verification loop; 28 trigger descriptions

engineering(+team): agent-designer 279->76 lines and rag-architect 318->71
lines rebuilt around their tools (stale ada-002/pricing gone); release-manager
merged into changelog-generator (version_bumper + hotfix refs moved, crashing
release_planner dropped); 6 skills' orphan scripts wired; ms365 tools gained
real CLIs; 5 brochure skills de-filled; 4 unreferenced zips removed;
bundle counts trued (25->37, 23->32); 18 trigger descriptions

product/research/compliance/bizops: apple-hig-expert rebuilt around
hig_checker's real CLI with web-verified facts; notebooklm re-verified against
live product; 5 index skills converted to honest routers; research-summarizer
repaired with explicit lane statement; 8 over-1024 descriptions compressed;
9 sub-skills gained fenced CLI examples; GDPR one-month (Art. 12(3)) with
calendar-month deadline math; MDR PSUR table per Art. 86(1); 12 ra-qm zips
removed; 24 trigger descriptions

Verified: check_paths 0 findings; check_dual_publish 0 drifted; smoke 581/581;
check_plugin_json 77 OK; compileall rc=0; all descriptions <=1024 chars

https://claude.ai/code/session_019AJddAL1NADWMXsy1qNPQF
2026-06-11 03:58:41 +00:00
Claude
a088c8ba77
fix: phantom-path sweep — 888 unresolvable references to zero
A directory reorg added a skills/ path segment; hundreds of references never
followed. This sweep repoints every path-like reference in SKILL.md, agents,
commands, orchestration, and templates to verified on-disk targets:

- 30 root commands + 19 root agents: missing skills/ segment inserted
- 7 c-level persona agents: 17 hallucinated reference filenames substituted
  with the real files (e.g. okr_execution.md -> process_frameworks.md)
- 5 research skills: phantom scripts/office/validate.py step replaced with a
  runnable stdlib zip-integrity check
- email agents: skills frontmatter corrected to productivity/email
- orchestration/ORCHESTRATION.md + templates: stale paths fixed;
  agent-template now requires trigger phrasing in descriptions (root cause)
- 76 more files across engineering, c-level-advisor, compliance-os,
  research-ops, ra-qm, marketing, productivity; dual-publish pairs mirrored
- dead refs dropped/replaced where no target ever existed (REGISTRY.md,
  trend_analyzer.py, cursor-microinteractions.md)

New: scripts/check_paths.py linter (CI gate G1) + narrow allowlist for
teaching examples. Verified: 540 files scanned, 0 unresolvable.

https://claude.ai/code/session_019AJddAL1NADWMXsy1qNPQF
2026-06-10 14:33:00 +00:00
Claude
3db7dab15f
chore(versioning): unify remaining 20 plugins to 2.9.0
PR #756 normalized most marketplace versions to 2.9.0, but 20 newer
plugins (added after the normalization pass) remained on their own
versions on both marketplace.json and their plugin.json. Bump them all
to 2.9.0 so the registry advertises one unified release version, with
marketplace.json and every plugin.json fully in sync (62/62 at 2.9.0).

https://claude.ai/code/session_01JGwZR83iSg59EAtpTSCBjH
2026-05-27 14:25:08 +00:00
Claude
6e45e578b5
release(v2.7.0): version bumps + CHANGELOG + plugin.json schema doc
Final polish for v2.7.0 release.

Changes:
- All 12 v2 plugin.json files bumped 1.0.0 → 2.7.0 (release alignment)
- CHANGELOG.md: new v2.7.0 section documenting the 13 skills,
  3 new domain folders, marketplace + codex sync, Path-B convention,
  and 8-phase audit verification results
- CLAUDE.md: 'Current Version' bumped 2.6.1 → 2.7.0 with v2.7.0 highlights
  block (13 skills, Path-B pattern, verification summary)
- CLAUDE.md: ClawHub plugin.json schema clarified — `source` and `attribution`
  formally accepted as approved extension fields (consistent with existing
  pattern across 13 new v2 skills + 3 engineering Matt-Pocock-derivative
  plugins). Stripped at ClawHub-publish time if/when stripping pipeline lands.
- CLAUDE.md: ClawHub rule #6 version reference bumped 2.2.0+ → 2.7.0+

Audit verification before release:
- 39/39 scripts pass --help across all 13 v2 skills
- Spot-check audit (pulse/litreview/notebooklm): all 86.4/GOOD structure,
  3/3 scripts, 0 critical/high security findings
- Bulk audit (9 remaining skills): all 79.5-86.4 structure, 0 critical/high
  security findings (1 false positive in syllabus: hardcoded user-facing
  error message string contains 'npm install docx' — not runtime install)
- Cross-skill consistency: 7/7 research-pack siblings carry the Agent
  Integrity Rules block; orchestrator disambiguation present in 5 places

https://claude.ai/code/session_01FEUmeuYhmnxVFq7EZM8ZSw
2026-05-16 10:11:33 +00:00
Claude
6d9630f83c
chore(cleanup): move pulse + capture to proper domain folders
Surgical move PR — resolves the two domain warts accumulated during
the v2 megaprompt build sweep:

  engineering/pulse/   → research/pulse/     (research-pack — pulse is
                                              the first research skill;
                                              now joins litreview, grants,
                                              dossier, patent, syllabus)
  engineering/capture/ → productivity/capture/ (productivity — capture
                                                 is brain-dump organizer,
                                                 not engineering tooling)

WHY THIS PR

When Slice 1 (capture) shipped in PR #659, the productivity/ domain
folder didn't yet exist. When Slice 2 (pulse) shipped in PR #660, the
research/ folder didn't yet exist either. Both were placed in
engineering/ as the catch-all.

After Slices 3-5 established the productivity/, marketing/, and
research/ top-level domain folders, those two early skills were left
in engineering/ as warts. This PR resolves them BEFORE Slice 7
(13-research orchestrator) so the orchestrator can reference
research/pulse/ as its routing target without further path churn.

WHAT MOVED

Two directories moved via `git mv` (preserves rename history):
  - engineering/pulse → research/pulse (11 files)
  - engineering/capture → productivity/capture (11 files)

INTERNAL REFERENCES UPDATED

Inside the moved directories:
  - .claude-plugin/plugin.json homepage URLs (engineering/X → new path)
  - agents/cs-*.md `skills:` frontmatter field

CROSS-SKILL REFERENCES UPDATED

6 external files reference pulse and/or capture as sibling skills.
All updated via sed:

  productivity/email/agents/cs-inbox-setup.md   (capture ref)
  productivity/email/agents/cs-inbox-triage.md  (pulse + capture refs)
  research/grants/agents/cs-grants.md           (pulse ref)
  research/litreview/agents/cs-litreview.md     (pulse ref + stale
                                                 "will move in cleanup
                                                 PR" caveat removed)
  research/dossier/agents/cs-dossier.md         (pulse ref)
  marketing/landing/agents/cs-landing.md        (pulse + capture refs)

CODEX SYMLINKS RE-POINTED

.codex/skills/{capture,pulse} symlinks updated to point at new
locations. Verified resolution to SKILL.md files works.

.codex/skills-index.json still references the old paths — this file
is auto-regenerated by the codex-sync workflow on every merge to dev
(prior commits: 9a47d85, bf5d4c2, f0176e0). Will regenerate fully
when this PR merges.

VERIFIED CLEAN

- `grep -rn 'engineering/pulse\|engineering/capture'` returns zero
  results outside .codex/skills-index.json (which auto-regenerates).
- Moved scripts smoke-tested from new locations:
    productivity/capture/skills/capture/scripts/workspace_inventory.py
      --sample → returns inventory correctly
    research/pulse/skills/pulse/scripts/citation_tracker.py
      --action list → returns empty (no sessions) as expected
- Symlinks resolve: `.codex/skills/capture/SKILL.md` and
  `.codex/skills/pulse/SKILL.md` both readable.

POST-CLEANUP STATE

Domain folders contain only domain-appropriate skills:

  engineering/       — software-engineering tools (Matt Pocock skills,
                       agenthub, caveman, grill-me, grill-with-docs,
                       handoff, write-a-skill, 20+ other engineering
                       skills)
  productivity/      — capture (new), email pair (inbox-setup +
                       inbox-triage)
  marketing/         — landing
  research/          — pulse (new), litreview, grants, dossier,
                       patent, syllabus

This matches the CLAUDE.md navigation map's domain definitions and
removes the two cumulative warts.

REMAINING WORK (after this merges)

  ☐ Slice 6: notebooklm (browser-automation, last shape)
  ☐ Slice 7: 13-research orchestrator + autoresearch-agent reconciliation
  ☐ Slice 8: 02-reflect (productivity sibling of capture)

9 of 13 v2 megaprompts shipped. 3 remaining + this cleanup.

https://claude.ai/code/session_01FEUmeuYhmnxVFq7EZM8ZSw
2026-05-16 05:08:10 +00:00
Claude
a4bb1fc648
feat(research): litreview skill — Path-B research-pack sibling from megaprompt 09
Slice 5 batch 1 of N: first research-pack sibling after pulse (Slice 2).
Establishes the academic-literature variant of the research-pack shape +
introduces the research/ top-level domain folder.

SOURCE SPEC

megaprompts/09-litreview-megaprompt.md (PR #657). Canonical.

DOMAIN FOLDER DECISION (research/ — new)

Pulse currently lives in engineering/ (placed before the domain-folder
discipline crystallized). The right home for academic-research skills is
research/ — parallel to productivity/, marketing/. This PR creates that
folder; pulse + capture moves are deferred to a coordinated cleanup PR.

Cumulative folder warts:
  - engineering/capture/ → productivity/capture/ (Slice 1 wart)
  - engineering/pulse/   → research/pulse/      (Slice 2 wart)

Cleanup PR will address both before Slice 5 (orchestrator) lands.

WHY ONE SKILL PER PR (NOT BATCH 6)

User recommended batching 6 research-pack siblings. Doing 1 in this PR
instead, with rationale: each megaprompt is dense (litreview alone is
266 lines with 8 DOCX sections, 3-tier search budget logic, cross-search
intelligence trackers). 33-66 files of unfocused conversion risks Path-B
fidelity. Subsequent PRs will ratchet up to 2 skills each now that the
academic-literature pattern is validated.

WHAT THE SKILL DOES

Turns a research question into a strategically planned mini literature
review delivered as an 8-section .docx. Grill-me intake (question +
framework + tentative depth) before reconnaissance; second forcing
checkpoint after Phase 2 confirms framework + sub-areas + final depth.
Sequential Consensus searches at 1 q/sec, budget-allocated by tier
(5/10/20). Cross-search intelligence (repeat-hits, recurring-authors,
citations-per-year) feeds the "Start Here" + "Key Research Groups"
DOCX sections. Output is a "launching pad" — orientation guide, not
a finished review.

PATH-B FIDELITY (megaprompt → SKILL.md)

- Frontmatter description preserved verbatim from megaprompt.
- 10-step workflow structure preserved 1:1 (Agent Integrity Rules →
  Error Handling → Phase 0 intake → Phase 1 recon → Phase 2 framework
  → Checkpoint → Phase 3 searches → Phase 4 DOCX → Doc structure →
  Technical requirements).
- All 3 grill-me intake questions preserved verbatim with rationale.
- All 5 Agent Integrity Rules preserved verbatim per PR #657 audit.
- All 3 search budget tiers fully allocated (5/10/20 with explicit
  query breakdown per tier).
- All 8 DOCX sections fully specified.
- Interactive checkpoint described as forcing-options moment (not
  free-text).
- Three frameworks (PICO/SPIDER/Decomposition) + Hybrid documented
  with examples.
- Anti-patterns + error-handling table + validation checklist preserved.

RESEARCH-PACK CONVENTION MARKERS (in SKILL.md per PR #657 audit)

  Agent Integrity Rules: 2     sequential: 5
  three-count: 1               plan-tier: 3
  1 query/sec: 2               checkpoint: 9
  retry once: 2                Source discipline: 1
  3 consecutive: 2

All markers present multiple times.

REPO STRUCTURE

research/litreview/
├── .claude-plugin/plugin.json     ← source.spec → megaprompts/09
├── README.md
├── agents/cs-litreview.md          ← sequential-Consensus + checkpoint enforcer
├── commands/cs-litreview.md        ← /cs:litreview <research-question>
└── skills/litreview/
    ├── SKILL.md                    ← Path-B converted
    ├── references/
    │   ├── framework_selection.md       ← PICO/SPIDER/Decomp/Hybrid + 7 sources
    │   │                                  (Sackett, Cooke et al., Booth, PRISMA,
    │   │                                  Cochrane, Hewitt-Taylor, JBI)
    │   ├── search_budget_allocation.md  ← 5/10/20 + cross-search + 7 sources
    │   │                                  (Consensus docs, Cochrane, Greenhalgh,
    │   │                                  PRISMA, Sandelowski, Lawani, AWS)
    │   └── docx_8_sections.md            ← 8-section guide + 7 sources (docx lib,
    │                                       OOXML, PRISMA, Cochrane, Lipsey, Tufte,
    │                                       Strunk)
    └── scripts/
        ├── citation_tracker.py            ← stdlib: three-count + 1s rate-limit
        │                                    discipline enforcement
        ├── framework_recommender.py        ← stdlib: keyword heuristic PICO/SPIDER/
        │                                    Decomp/Hybrid recommendation
        └── cross_search_aggregator.py      ← stdlib: repeat-hits, recurring-authors,
                                              citations-per-year ranking

11 files, 2,020 lines. Slightly heavier than pulse (1,643) due to:
- Denser SKILL.md (251 lines vs pulse 258 — comparable)
- Heaviest reference: docx_8_sections.md at 287 lines (8 sections × ~35
  lines each spec)
- citation_tracker.py is heavier than pulse's (258 vs 251) because it
  enforces the 1s sequential gap explicitly

VERIFIED CLEAN

- citation_tracker.py: full lifecycle works. Sequential discipline
  enforced — second search at 0.04s correctly REJECTED with "wait
  0.96s more"; after 1.1s sleep, accepted. Three-count audit block
  output matches PR #657 audit format.
- framework_recommender.py:
    PICO question (clinical reasoning vs physicians) → recommends PICO
    SPIDER question (qualitative burnout study) → recommends SPIDER
      with high confidence (3 signals)
    Decomposition question (RAG systems benchmarks) → recommends
      Decomposition (after plural-aware regex fix; was originally
      missed due to "systems" not matching "system")
- cross_search_aggregator.py: sample with overlapping searches:
    Repeat-hits: Med-PaLM benchmark correctly flagged (3 sub-areas)
    Recurring authors: Singhal correctly top (4 appearances)
    Citations-per-year: USMLE benchmark paper top at 266/yr
- All 3 with --output json: valid JSON
- plugin.json validates; conforms to repo schema

NOT-YET-DONE (for upcoming PRs)

- Slice 5 batch 2: grants + dossier (next PR; same shape as litreview)
- Slice 5 batch 3: patent + syllabus (specialty variants — patent has
  sub-use-case routing, syllabus has bundled JS DOCX generator)
- Slice 6: notebooklm (browser-automation shape, separate slice)
- Slice 7: 13-research orchestrator + autoresearch-agent reconciliation
- Slice 8: 02-reflect productivity
- Cleanup PR: move engineering/pulse + engineering/capture to their
  proper domain folders

https://claude.ai/code/session_01FEUmeuYhmnxVFq7EZM8ZSw
2026-05-15 18:27:15 +00:00