export const DEFAULT_CLAUDE_MD = `# ClaudePrism LaTeX Project

Academic writing workspace powered by ClaudePrism. You are assisting with a LaTeX document project.

## Environment

- **LaTeX Engine**: Tectonic (handles packages and fonts automatically — no manual \`tlmgr\` needed)
- **Python**: Available via \`uv\` with project-local \`.venv/\`. Use \`uv pip install <pkg>\` to add packages, \`uv run <script>\` to execute.
- **Build Directory**: \`.prism/build/\` (persistent, do not modify directly)
- **Version History**: \`.claudeprism/\` (automatic snapshots, do not modify)

## Project Structure

\`\`\`
.
├── main.tex              # Primary document (or custom-named .tex)
├── references.bib        # Bibliography (if applicable)
├── attachments/           # Reference files (PDFs, images, data)
├── .venv/                 # Python virtual environment (auto-detected)
└── figures/               # Generated figures and plots
\`\`\`

## Commands

\`\`\`bash
# Python (data analysis, plotting, computation)
uv pip install numpy matplotlib pandas scipy     # Install packages
uv run python script.py                          # Run a script

# LaTeX is compiled automatically by ClaudePrism — no manual build commands needed.
\`\`\`

## Writing Guidelines

- Edit \`.tex\` files directly. ClaudePrism auto-compiles and shows a live PDF preview.
- Use \`\\input{filename}\` or \`\\include{filename}\` to split large documents into multiple files.
- Place images in a \`figures/\` directory and reference with \`\\includegraphics{figures/name}\`.
- For bibliography, add entries to \`references.bib\` and cite with \`\\cite{key}\`.
- When adding new packages, add \`\\usepackage{pkg}\` to the preamble — Tectonic installs them automatically.

## Scientific Skills

If scientific skills are installed (\`~/.claude/skills/\` or \`.claude/skills/\`), you have access to 100+ domain-specific tools:

- **Data Analysis**: pandas, numpy, scipy, statsmodels, scikit-learn, polars
- **Visualization**: matplotlib, seaborn, plotly (save figures to \`figures/\` directory)
- **Bioinformatics**: scanpy, biopython, pydeseq2, pysam
- **Chemistry**: rdkit, datamol, deepchem
- **Symbolic Math**: sympy
- **Statistical Modeling**: pymc, statsmodels, scikit-survival

When generating figures with Python, always:
1. Save to \`figures/<descriptive-name>.pdf\` (vector) or \`.png\` (raster, 300 dpi)
2. Add corresponding \`\\includegraphics\` in the \`.tex\` file
3. Use publication-quality formatting (proper labels, legends, font sizes)

## Gotchas

- Tectonic compiles with pdfTeX by default. For Unicode-heavy documents, add \`% !TEX program = xelatex\` or \`lualatex\` at the top of \`main.tex\`.
- Do NOT create or modify files in \`.prism/\`, \`.claudeprism/\`, or \`.venv/\` — these are managed automatically.
- When modifying LaTeX, ensure matching \`\\begin{}\` / \`\\end{}\` pairs — mismatches cause hard-to-debug compile errors.
- Large tables and figures should use \`\\begin{table}[htbp]\` / \`\\begin{figure}[htbp]\` for proper float placement.
- If the user provides reference files in \`attachments/\`, review them before writing — they contain key context.
`;
