fix: apply numeric-aware sorting before limit in formatAndCombineResults

The previous implementation removed sorting entirely, which caused version-numbered files to be excluded when directories had 200+ files. This fix applies numeric-aware sorting (using localeCompare with numeric option) before the limit is applied, ensuring proper ordering of version sequences like v3.25, v3.25.1, v3.25.2, etc.

src/services/glob/list-files.ts

@@ -601,8 +601,20 @@ function formatAndCombineResults(files: string[], directories: string[], limit:
 	const uniquePathsSet = new Set(allPaths)
 	const uniquePaths = Array.from(uniquePathsSet)
 
-	// Note: Sorting is handled by formatFilesList with numeric-aware algorithm
-	// to properly handle version-numbered files (e.g., v3.25.1, v3.25.2, etc.)
+	// Apply numeric-aware sorting before limiting results
+	// This ensures version-numbered files are properly ordered before truncation
+	uniquePaths.sort((a: string, b: string) => {
+		const aIsDir = a.endsWith("/")
+		const bIsDir = b.endsWith("/")
+
+		// Directories come first
+		if (aIsDir && !bIsDir) return -1
+		if (!aIsDir && bIsDir) return 1
+
+		// For same type (both dirs or both files), use numeric-aware comparison
+		// This properly handles version numbers like v3.25.1, v3.25.2, etc.
+		return a.localeCompare(b, undefined, { numeric: true, sensitivity: "base" })
+	})
 
 	const trimmedPaths = uniquePaths.slice(0, limit)
 	return [trimmedPaths, trimmedPaths.length >= limit]