* feat: simplify local links and support line anchors
* fix: align line anchor tests with CI lint
* fix: preserve local links across file moves
* fix: encode markdown paths when rewriting links
* refactor(read): keep explicit line range parameters
* fix: simplify legacy link predicate compatibility
* docs: align local link behavior with implementation
* fix: skip unsupported markdown destination escapes
* fix: normalize workspace link paths across platforms
* fix: bound markdown link scanning
* fix: keep local link processing linear
* docs: clarify permissive markdown link parsing
* fix: handle local link processing failures
* refactor: limit file links to wikilink syntax
* docs: align wikilink contract with implementation
* fix: normalize dream and neighbor paths on Windows
* fix: resolve workspace path for neighbor expansion
* feat(file_store): upgrade FAISS to HNSW index with async reindex and path constraint
- Replace IndexFlatIP with IndexHNSWFlat for better recall/speed tradeoff
- Add dynamic efSearch (limit * 5) scaled to query request size
- Add async_reindex option: background rebuild with generation-based invalidation
- Extract _delete_nodes() in LocalFileStore for subclass reuse
- Add unit tests for file store consistency
* fix: resolve pylint warnings in faiss store and test file
* refactor(file_store): replace generation-based reindex with event-flag worker
- Replace _reindex_generation/lock/task with a single long-lived worker
coroutine consuming an asyncio.Event flag; repeated submissions coalesce
- Use local index reference in vector_search to avoid TOCTOU on self._faiss_index
- Pass index explicitly to _set_ef_search for consistency
- Track _index_writes to re-arm reindex after concurrent writes
- Update tests to match new internal API
* fix: resolve pylint too-many-return-statements and implicit-booleaness warnings
* feat(file_store): add refine maintenance hook and incremental embedding backfill
- Add refine() idle-time maintenance hook to BaseFileStore/LocalFileStore
- FaissLocalFileStore: incremental vector add on backfill instead of full rebuild
- Dynamic tombstone compaction threshold scaled by index size
- Add RefineStoreStep with daily cron job (refine_store_cron)
- Enable faiss backend and embedding_store by default in default.yaml
- Add unit tests for faiss index maintenance
* chore(deps): promote faiss-cpu to core dependencies
faiss backend is now the default file_store, so faiss-cpu moves from
the optional [core] extra to the base dependencies list.
* feat: rename refine_store to optimize_index and add vecdb_path_constraint
- Rename refine_store step to optimize_index with cron job scheduling
- Add vecdb_path_constraint to file_store components
- Update default.yaml with optimize_index_cron and faiss backend comment
- Update memory_search docs (en/zh) for FAISS vector management
- Update unit tests for index maintenance
* feat(faiss): add embedding digest to reject stale sidecar after partial dump
Add _chunks_embedding_digest() that computes an order-independent SHA-256
over (chunk_id, float16 embedding) pairs. The digest is written into the
idmap sidecar at dump time and verified at load time. A mismatch means the
sidecar vectors belong to a different chunk generation than the authoritative
JSONL — detectable even when the live-ID set is unchanged (same-ID in-place
update crash window).
Add test_faiss_rejects_stale_sidecar_after_partial_dump reproducing the
crash-between-writes scenario and asserting digest-based rejection.
Compress verbose docstrings/comments in existing tests for pylint line
budget.
---------
Co-authored-by: sa-buc <jiangniurou.xyf@dail-algo011164204033.ET135>
* feat(config): add environment variable configuration for agent subprocesses
- Add environment field to ApplicationConfig to store variables for agent subprocesses
- Remove dynamic loading of .env files in agent wrappers
- Introduce subprocess_environment property in base agent wrapper
- Pass application-level environment variables to Claude Code and Codex agents
- Load environment variables once at startup and pass to ReMe application
- Remove dependency on load_env utility in agent wrapper implementations
- Update tests to use configured environment instead of dynamic loading
- Remove unused environment loading utilities and related test cases
* refactor(mcp): remove channel notification system and related components
- Removed channel notification step implementation
- Removed claim channel step implementation
- Removed ChannelSink class from MCP service
- Removed channel-related documentation from AGENTS.md
- Removed channel instruction text from MCP service
- Removed all channel-related tests
- Updated application context metadata comment to remove channel sink reference
- Removed channel module initialization and imports
* feat(service): add job whitelisting capability to BaseService
- Add optional jobs parameter to BaseService.__init__ to configure job whitelist
- Store jobs as set in self.jobs attribute for efficient lookup operations
- Modify add_jobs method to filter jobs based on whitelist configuration
- Update documentation in both English and Chinese to describe new feature
- Add comprehensive unit tests for job whitelisting behavior
- Implement flowchart update showing new filtering logic
- Preserve existing enable_serve flag behavior alongside new whitelisting
* refactor(service): enhance service job validation and MCP tool injection
- Add strict validation for service jobs whitelist with detailed error messages
- Implement injected job arguments support for MCP services with conflict detection
- Add tool error handling for unsuccessful responses in MCP services
- Remove duplicate job names in Codex agent wrapper using dict.fromkeys
- Update MCP server argument format from single JSON array to repeated --job flags
- Add comprehensive test coverage for job injection and error handling scenarios
- Update documentation to reflect service job validation and MCP features
- Ensure application cleanup occurs even when service lifespan encounters errors
* feat(agent): update skill handling to preserve existing Claude skills
- Change skills parameter processing to use 'all' instead of filtered list
- Add logic to select project skills without restricting Claude's existing skills
- Update variable naming from 'skills' to 'selected_skills' for clarity
- Modify application context metadata documentation to clarify in-memory state usage
- Add test case to verify configured skills are added without filtering existing skills
- Update internal skill directory handling to use renamed variable consistently
* refactor(agent): restructure agent wrapper components and session storage
- Move CcFileSessionStore to separate module for better organization
- Add SDK package version logging in base agent wrapper
- Update Claude Code agent to use new session store structure with project keys
- Refactor Claude Code agent wrapper to use proper type hints and SDK integration
- Add support for server tool use events in Claude Code message processing
- Improve error handling and resource cleanup in streaming operations
- Update Codex agent wrapper with proper type annotations and configuration
- Remove deprecated system prompt mode handling from Claude Code wrapper
- Fix session path construction for Claude Code transcript storage
- Update dependency injection and configuration handling patterns
* fix(cc_agent_wrapper): resolve Claude Code SDK integration issues
- Added dataclass import and created _BlockState for content block metadata tracking
- Implemented proper MCP server name constant and tool context ID validation
- Fixed tool_context_id injection to prevent duplicate assignment errors
- Resolved skills parameter handling in build_options method
- Enhanced job tools integration with MCP servers mapping validation
- Replaced deprecated block_ids/block_types/tool_call_names with block_states dict
- Updated message_delta to emit USAGE chunks instead of REPLY_END
- Fixed stream result handling to ensure proper REPLY_END emission
- Improved error handling for session mirror failures and rate limits
- Added proper cleanup for expected trailing errors in streams
- Refactored Codex agent wrapper initialization and configuration management
- Removed obsolete system_prompt_mode from default config
- Enhanced test coverage for new block state and error handling features
- Fixed async generator handling with aclosing context manager
- Improved chunk type mapping for Claude Code SDK events
* refactor(tests): remove demo config tests from config parser test suite
- Removed test_demo_config_registers_llm_jobs function and its assertions
- Eliminated verification of LLM demo job configurations
- Removed checks for agent wrapper component settings
- Deleted assertions for model configurations and parameters
- Cleaned up deprecated test cases related to demo config parsing
* refactor(evolve): simplify Claude Code session store path structure
- Removed redundant project key subdirectory from session link generation
- Updated CcFileSessionStore initialization to use direct session directory path
- Maintained existing session layout compatibility for backward compatibility
- Added unit tests to verify session persistence behavior with existing transcripts
- Ensured UUID-based session files remain accessible at expected locations
- Preserved existing session directory structure without additional nesting
* refactor(agent): defer optional Codex SDK imports until first use
- Moved openai-codex imports inside functions to avoid mandatory dependencies
- Added TYPE_CHECKING guard for development time type checking only
- Implemented lazy loading mechanism with _get_async_codex_class function
- Updated AsyncCodex initialization to occur on demand rather than at module level
- Maintained backward compatibility while improving import performance
- Added test case to verify package import works without optional Codex SDK
- Updated agentscope dependency to version 2.0.4.post1 in pyproject.toml
* test(embedded): add compatibility tests for in-process ReMe embedding
- Add test suite for QwenPaw-style embedded configurations
- Verify optional defaults remain preserved in embedded configs
- Ensure in-process application API stays compatible
- Test model injection and lifecycle management compatibility
- Remove obsolete hermes agent plugin tests
- Update CLI import test to cover multiple optional SDKs
- Block claude_agent_sdk and openai_codex during import testing
* fix(auto-memory): preserve message timestamps
* fix(auto-memory): infer daily date from messages
* feat(file_io): add strict date parsing and improve daily date handling
- Add new parse_daily_date function for strict YYYY-MM-DD validation
- Replace extract_daily_date with parse_daily_date for explicit date validation
- Change _messages_day to use max date instead of min for historical imports
- Reorder imports to maintain consistent module ordering
- Move session message saving after date validation in auto_memory
- Add comprehensive tests for invalid date rejection before saving
- Add tests for strict YYYY-MM-DD date format validation
- Update test names to reflect latest date behavior
---------
Co-authored-by: Ziyang Guo <121015044+RunMarshal@users.noreply.github.com>
Co-authored-by: jinli.yl <jinli.yl@alibaba-inc.com>
* feat(file_io): add daily_write step for creating daily notes with conversation metadata
- Add DailyWriteStep class that delegates to write job for creating daily notes
- Register daily_write job in default configuration with proper parameters
- Include validation for name and session_id path components
- Add test coverage for daily_write functionality including metadata handling
- Preserve existing job execution method in application.py after repositioning
- Update base_step.py to use positional-only parameter syntax for job methods
- Import and expose DailyWriteStep in file_io module initialization
- Override reserved metadata keys (name, description, session_id, source_conversation) with fixed values
- Refresh daily index after successful write operation
- Generate proper source conversation links in markdown format
* feat(daily): refactor daily note system with enhanced metadata handling
- Introduce validate_filename_component function and export it
- Add _INDEX_HIDDEN_METADATA_KEYS to hide conversation metadata from index
- Update scan_notes to exclude hidden metadata keys from index rendering
- Modify auto_memory to use daily_write tool and manage session frontmatter
- Implement session note lookup and renaming based on frontmatter name
- Update daily_list to return flattened note metadata including session info
- Change daily_write to dispatch write step instead of running job
- Add test cases for updated daily note functionality and metadata handling
- Update version from 0.4.0.2 to 0.4.0.3
* fix(evolve): correct metadata update in auto memory response
- Fixed trailing comma issue in metadata dictionary update
- Ensured proper formatting of response metadata structure
- Maintained existing functionality while fixing syntax error
* refactor(auto_resource): replace daily_create with dynamic note management
- Remove DailyCreateStep and related exports from file_io module
- Replace static daily note creation with dynamic resource-linked card system
- Implement LLM-suggested naming with frontmatter-driven file management
- Add source_resource linking for tracking original files
- Introduce collision handling with hash-based suffixes
- Update documentation to reflect new resource card workflow
- Modify auto_resource prompts to use write/edit tools instead of daily_create
- Adjust test fixture comments to match new agent behavior
- Update framework diagrams and quick start examples accordingly
* feat(app): add version info to app initialization and update auto-memory logic
- Include version number in application startup logging
- Remove tool result truncation logic from auto-memory step
- Update auto-memory to exclude tool_result blocks from saved history
- Add test case to verify tool results are filtered out from message saving
- Update YAML prompts to clarify filename naming rules without dates
- Modify configuration to support new dispatch steps format with persistence control
* feat(auto_memory): add note modification tracking and optimize frontmatter updates
- Add _note_bytes and _note_modified methods to track actual file changes
- Optimize frontmatter updates by checking existing metadata before update
- Add modified flag to response metadata indicating actual note changes
- Update logging to include modified status in various operations
- Add comprehensive tests for modified/unmodified detection scenarios
- Enhance result hook logic to skip when no actual changes occur
- Refactor metadata handling to properly track creation vs modification status
* docs: rename vault_dir to workspace_dir in documentation and examples
* refactor(extract): format long method call across multiple lines
* refactor(extract): format system prompt parameters for better readability
