25 commits

Author	SHA1	Message	Date
jinliyl	cf22ef3b1d	feat: add codex auth modes, background embedding/index repair, and qwenpaw logging (#371) ... * feat(codex): add authentication mode support with thread-safe logging - Implement _CodexAuthConfig dataclass for resolved auth settings - Add auth_mode parameter with auto/api_key/oauth options - Separate API key and OAuth authentication flows - Force specific login method based on auth mode - Add explicit API key validation requirement - Serialize concurrent logger initialization in thread lock - Close logging handlers properly during cleanup - Update default config with auth_mode presets for codex and codex_oauth - Add comprehensive tests for authentication modes and concurrent logging * feat(file_store): implement background embedding backfill and keyword index repair - Add _after_embedding_backfill hook in FAISS local file store - Schedule startup embedding repair without delaying component readiness - Cancel and collect embedding backfill task during component shutdown - Log progress at fixed percentage boundaries for long-running operations - Process embedding backfill in configurable batch sizes with progress reporting - Rebuild keyword index in bounded batches with detailed mismatch diagnostics - Format stdlib logs consistently with QwenPaw console output using relative paths - Run embedding backfill as background task that doesn't block component startup - Add comprehensive tests for background embedding and keyword index repair scenarios * fix(file-store): repair graph-chunk consistency on load - Add _repair_graph_chunk_consistency method to detect and fix mismatched graph/chunk states - Clear torn graph/chunk state when missing or orphaned chunks are detected - Ensure keyword index sync handles empty chunks properly - Add comprehensive tests for graph-chunk consistency scenarios - Update test utilities to properly seed graph/chunk snapshots - Increment version to 0.4.1.2 * feat(file_io): enhance list step response format and add comprehensive logging - Format list output with bullet points for better readability - Add explicit "No files found" message when directory is empty - Include detailed timing information for file store startup phases - Add logging for chunk loading, graph consistency checks, and keyword indexing - Provide detailed metrics for embedding backfill operations - Add comprehensive test coverage for empty directory scenarios - Include batch processing statistics for embedding operations * feat(logger): add QwenPaw logging integration with forwarding mechanism - Introduce _ForwardToLoggerHandler to forward log records to target logger - Add qwenpaw logger integration that forwards ReMe logs to QwenPaw handlers - Maintain ReMe logger stability for modules that cache it at import time - Enable QwenPaw handlers to take effect without ReMe reconfiguration - Add comprehensive tests for stdlib forwarding to QwenPaw sinks - Support explicit REME_DISABLE_LOGURU=false to keep original Loguru backend - Preserve existing logging behavior when QwenPaw is not configured * fix(file_store): serialize concurrent FAISS dump operations to prevent corruption - Add asyncio lock to ensure only one FAISS dump operation runs at a time - Generate unique temporary filenames using UUID tokens for atomic replacement - Implement proper cleanup of temporary files in finally block - Add comprehensive test to verify concurrent dumps are serialized - Ensure atomic writes by replacing both index and idmap files together - Prevent partial state writes during concurrent access scenarios	2026-07-20 14:47:34 +08:00
Sen Huang	1c08eaa559	fix: enforce markdown chunk byte limits (#370)	2026-07-17 22:03:58 +08:00
Sen Huang	987f275985	fix: bound markdown chunking for large section trees (#369)	2026-07-17 17:57:56 +08:00
jinliyl	c1a25e9ff4	feat(agent): add Codex agent wrapper and ReMe MCP bridge (#358) ... * feat(agent): add Codex wrapper integration * feat(agent): enhance agent wrapper functionality and add comprehensive testing - Implement structured output schema normalization across all wrappers - Add Claude Code system prompt mode support with append/replace options - Introduce Codex agent wrapper with streaming, tool context isolation, and skill management - Enhance skill linking with validation and conflict resolution - Add approval event streaming support for Codex wrapper - Implement output schema validation and normalize function - Create dedicated test suites for Claude Code and Codex integration - Update README documentation for Codex wrapper capabilities - Refactor kwargs merging with proper schema handling - Add tool context validation when resuming sessions - Implement proper cleanup and session management for Codex wrapper * test(cc-agent): add test coverage for structured output scenarios - Add docstring for empty schema validation in build_options - Document falsy structured output preservation behavior - Add docstring for streaming wrapper schema rejection - Include lambda function reference for wrapper factory consistency - Add test documentation for live Codex wrapper contract exercise * docs: revert README changes * fix(agent): interrupt abandoned Codex turns	2026-07-17 13:39:18 +08:00
jinliyl	2a85c36fa9	refactor(embedding): defer provider construction until first remote call (#361) ... - Changed dimensions property to avoid forcing provider construction - Added _ensure_model method to construct provider on demand - Modified __call__ to ensure model exists before use - Updated _start to defer provider initialization - Removed eager health check during startup - Added compact embedding serialization with base64 encoding - Implemented batch processing for vector search with heap-based ranking - Added document_ids property to keyword index interface - Updated chunk persistence to handle legacy JSON embeddings - Optimized memory usage by avoiding materialization of metadata in document_ids	2026-07-15 20:46:36 +08:00
jinliyl	b5e0ec2d8d	Modify budget calculation for text limit safety margin ... Adjust budget calculation to use 92% margin for token estimation.	2026-07-14 11:05:08 +08:00
jinliyl	bf7ca17705	feat(benchmark): add LongMemEval golden answer validation (#335) ... * feat(benchmark): add golden answer validation and session review for LongMemEval - Introduce GoldenCheckStep to validate LongMemEval golden answers using structured verdicts - Add SessionReviewStep to extract query/answer-relevant evidence from all sessions - Implement concurrent session processing with configurable concurrency limits - Create check_golden job configuration with lme_review and lme_judge agent wrappers - Add Qwen3.7-plus model configuration for enhanced processing capabilities - Include python_execute tool integration for agent-based reasoning and date validation - Generate comprehensive JSON output with session summaries and validation verdicts - Add run_check_golden.py script for batch processing across all LongMemEval samples - Configure proper logging initialization with console and file output options - Update component registry and file I/O modules to support new benchmark features * feat(scripts): add script to summarize LongMemEval check_golden verdicts - Parse check_golden.json files across all LongMemEval samples - Calculate accuracy metrics for golden answers and session IDs - Provide breakdown by question type with percentage calculations - Add command line options for listing bad samples and JSON output - Include progress tracking showing completed vs pending samples - Display confidence scores and date sanity checks statistics * refactor(benchmark): move golden check scripts to longmemeval directory - Moved run_check_golden.py from scripts/ to benchmark/longmemeval/ - Moved stats_check_golden.py from scripts/ to benchmark/longmemeval/ - Updated path resolution to use parents[2] instead of parent.parent - Added new --list-run-failed option to stats script - Added logging directory constant and functions for tracking launched samples - Enhanced stats output with launched count and run failure information - Improved error reporting with run failure details and log file paths * feat(benchmark): add LongMemEval agentic answer workflow with session extraction - Add LmeAgenticAnswerStep, LmeAutoMemoryStep, and LmeExtractSessionStep to __init__.py - Create shared helper render_with_source for displaying search results with session_id - Implement agentic_answer step with vector_search, bm25_search, and extract_session_by_id tools - Add auto_memory step to convert each session into search-friendly daily notes - Create extract_session step to retrieve and analyze raw session content by session_id - Update jinli_lme.yaml with auto_memory, vector_search, bm25_search, and agentic_answer jobs - Configure lme_memory, lme_extract, and lme_agentic_answer agent wrappers - Enhance search steps with include_source option to show session_id metadata - Add proper session_id tracking and collision handling in daily note generation * feat(benchmark): add LongMemEval agentic answer evaluation pipeline - Add session_id tracking to agentic_answer.py result metadata - Introduce run_agentic_answer.py driver for complete pipeline execution - Implement auto_memory, update_index, and agentic_answer job orchestration - Add concurrent execution with configurable limits and staggering - Create aggregation script for collecting tool-call trails and results - Add stats_agentic_answer.py for comprehensive result analysis - Implement resume capability with existing output detection - Generate aggregate.json with per-sample breakdown and tool call summaries * feat(steps): add ClearPathsStep for cleaning workspace outputs before rebuild - Introduce ClearPathsStep to remove stale workspace files/directories - Add support for specifying paths and config_keys as targets to clear - Implement safety checks to prevent deletion of files outside workspace - Add logging for cleared paths and warnings for invalid paths - Configure clear_paths_step in jinli_lme.yaml to clean daily_dir - Add clear_paths_step to clean mem_answer.json before rebuilds * feat(benchmark): add resume functionality to agentic answer runner - Replace --force flag with --resume flag for controlling job execution - By default every job reruns with clean rebuild behavior using config clear steps - Add --resume option to skip samples whose output already exists and continue interrupted batches - Update documentation to reflect new default clean rebuild behavior - Modify job skipping logic to honor resume flag instead of force flag - Update dry-run output to show correct todo jobs based on resume status - Change default example command to use --resume for continuing interrupted runs * feat(benchmark): generate JSONL output for check golden records - Add write_check_golden_list function to create JSONL file - Write all readable check_golden records as JSONL format - Include check_golden_list path in stats output - Display generated JSONL file path in summary report - Maintain UTF-8 encoding with non-ASCII character support * refactor(benchmark): rename answer judge step and integrate LME LLM judge - Rename AnswerJudgeStep to LmeLlmJudgeStep and update imports - Add new llm_judge configuration in jinli_lme.yaml - Update run_agentic_answer.py to include llm_judge in pipeline - Modify LmeLlmJudgeStep to read from query.json and answer.json - Write LLM judgement results back to mem_answer.json - Add command line options for start/end sample range selection - Update aggregate.json generation to include LLM judgement data - Add resume capability for llm_judge job based on judgement presence * refactor(benchmark): rename answer judge step and integrate LME LLM judge - Rename AnswerJudgeStep to LmeLlmJudgeStep and update imports - Add new llm_judge configuration in jinli_lme.yaml - Update run_agentic_answer.py to include llm_judge in pipeline - Modify LmeLlmJudgeStep to read from query.json and answer.json - Write LLM judgement results back to mem_answer.json - Add command line options for start/end sample range selection - Update aggregate.json generation to include LLM judgement data - Add resume capability for llm_judge job based on judgement presence * feat(steps): add wait_for_paths_step to block until workspace files exist - Introduce WaitForPathsStep class that polls for required workspace-relative paths - Add step registration with 'wait_for_paths_step' backend identifier - Implement path validation to ensure targets are within workspace boundaries - Add polling mechanism with configurable intervals via poll_seconds parameter - Include logging functionality with log_every_seconds parameter for status updates - Add metadata tracking of waited paths and duration in response object - Register step in index module and expose in public API - Configure step in jinli_lme.yaml to wait for session_review.json before golden check - Add script rename from run_check_golden.py to run_golden_check.py with enhanced options * feat(benchmark): enhance longmemeval benchmarking with concurrency and progress tracking - Add benchmark extra dependency group with portalocker requirement - Introduce concurrent execution support for golden_check and session_review workflows - Add progress reporting interval option with real-time status updates - Implement global throttling mechanism for session review requests using file locks - Enhance golden check validation with current schema verification - Add active task tracking and graceful shutdown handling - Rename check_golden scripts to golden_check for consistency - Update statistics reporting with correct/incorrect terminology instead of reasonable - Add stale format detection and compatibility handling for verdict fields - Include both_correct rate calculation in accuracy metrics - Add concurrency and staggering options for better resource management * ci(workflow): add Windows smoke test workflow - Create new workflow file .github/workflows/windows-smoke.yml - Configure workflow to trigger on push and pull request events - Set up Python environment with version 3.11 - Install package dependencies using pip - Run version job as smoke test for CLI functionality - Enable concurrency control to prevent duplicate runs - Use matrix strategy for Python version testing * feat(benchmark): add retry mechanism and health check for session review - Added retry configuration options (retry_initial_seconds, retry_max_seconds, retry_max_attempts) to jinli_lme.yaml - Implemented exponential backoff retry logic with configurable parameters in session_review step - Added output_is_healthy function to verify session_review.json integrity and absence of failed reviews - Updated resume functionality to skip only healthy outputs instead of all existing files - Integrated JSON parsing and validation to check for failed reviews in output files - Enhanced error handling and logging for retry attempts and recovery scenarios * feat(benchmark): add LongMemEval session review statistics script - Create stats_session_review.py to summarize session_review.json artifacts - Add command line options for listing failed, missing, and run failed samples - Implement JSON output mode for programmatic consumption - Calculate and display health statistics including total samples, healthy outputs, failed sessions - Provide detailed failure information with session IDs and error messages - Generate re-run commands for samples with failed reviews - Add percentage calculations for better statistical overview - Include support for multiple output formats and detailed logging * feat(benchmark): add LongMemEval output cleanup script and enhance golden check retry logic - Added clean_sample_outputs.py script to remove generated LongMemEval files while preserving source inputs - Implemented configurable retry mechanism in golden_check.py with exponential backoff strategy - Added retry parameters (initial/max seconds and max attempts) to control failure recovery behavior - Integrated asyncio support for asynchronous sleep during retry intervals - Configured default retry settings in jinli_lme.yaml with 5s initial and 300s maximum intervals - Preserved core files (query.json, answer.json, session/) while cleaning generated artifacts * feat(benchmark): add AppleDouble file cleanup to sample output cleaner - Remove AppleDouble files starting with '._' recursively including under session/ - Add is_under helper function to check if path is inside parent directory - Track targets in set to avoid duplicate processing - Include AppleDouble files in cleanup targets when not already covered by existing targets - Maintain dry-run mode as default behavior with --apply flag for actual deletion * refactor(benchmark): update LongMemEval sample output cleaning script - Add time and Iterator imports for enhanced functionality - Add --progress-every argument to control progress reporting frequency - Replace is_under function with iter_sample_targets generator - Implement detailed progress tracking with timing measurements - Add sample-by-sample processing with elapsed time reporting - Include AppleDouble file detection within session directory - Update target counting and deletion statistics display - Add conditional progress updates based on progress-every setting - Improve dry-run mode with would-delete indication * chore(benchmark): increase initial interval for session review step - Changed START_INTERVAL_SECONDS from 1.0 to 3.0 seconds - Adjusted timing parameters for better benchmark stability * refactor(benchmark): implement coordinated retry mechanism for session reviews - Add retry gate condition to coordinate concurrent review attempts - Implement wait_for_healthy_start_slot to handle sequential retries - Create mark_retrying and mark_recovered functions to track retry states - Update reply_with_retry to accept index parameter for coordination - Add has_prior_retry logic to prevent race conditions during recovery - Ensure proper cleanup of retry state on success or failure - Maintain backward compatibility while adding coordination features * chore(benchmark): adjust session review start interval timeout - Changed START_INTERVAL_SECONDS from 3.0 to 5.0 seconds - Increased initial delay for session review benchmark step - Updated timeout configuration for improved stability * refactor(benchmark): update session review concurrency and throttling mechanism - Replace global throttle with per-process concurrency control - Add concurrency parameter with default value of 30 in config - Add start_interval_seconds parameter with default value of 2 seconds - Change default concurrency from 3 to 1 in command line interface - Update documentation to reflect new throttling behavior - Implement semaphore-based concurrency limiting for review tasks - Modify retry mechanism to use local locking instead of global files - Remove portalocker dependency for cross-process throttling * refactor(config): update session review configuration and concurrency settings - Removed deprecated retry configuration parameters from jinli_lme.yaml - Increased MAX_CONCURRENCY from 30 to 60 in session_review.py - Reduced START_INTERVAL_SECONDS from 2.0 to 1.0 in session_review.py - Cleaned up redundant backend specifications in configuration file - Simplified agent wrapper configurations by removing obsolete retry settings * feat(benchmark): enhance LME auto memory step with advanced scheduling and error handling - Add datetime parsing functionality for LongMemEval timestamps with regex pattern - Implement configurable concurrency limits with MAX_CONCURRENCY of 60 - Introduce retry mechanism with exponential backoff for agent interactions - Add session filtering based on date comparison with question_date validation - Create rate limiting with start interval control between requests - Implement sophisticated retry coordination using asyncio conditions - Add comprehensive error tracking for failed and filtered session extracts - Remove deprecated concurrency parameter from jinli_lme.yaml configuration - Add structured output validation in session review step - Include detailed metadata reporting with session statistics and errors * fix(benchmark): adjust default concurrency for auto_memory job - Changed default concurrency from 3 to 1 for auto_memory job to prevent API overload - Updated help text to reflect new default value of 1 for concurrency parameter - Modified documentation to clarify concurrency behavior varies by job type * refactor(search): replace hardcoded candidate multiplier with constant - Introduced _CANDIDATE_MULTIPLIER constant set to 10 - Replaced hardcoded factor of 5 with _CANDIDATE_MULTIPLIER in BM25 search - Replaced hardcoded factor of 5 with _CANDIDATE_MULTIPLIER in vector search - Updated test to verify both search steps use ten times limit for candidates - Imported VectorSearchStep and Bm25SearchStep in test module - Added comprehensive test case for candidate count calculation logic * feat(lme): add data inspection error handling with fallback mechanism - Implemented non-retryable data inspection error markers detection - Added _is_data_inspection_error method to identify inspection failures - Created fallback handling for data inspection errors in auto memory extraction - Added fallback handling for data inspection errors in session review - Extended failed extracts tracking with non-retryable and fallback flags - Separated fallback extracts from regular failed extracts in reporting - Enhanced error logging with specific data inspection failure messages - Updated metrics to track fallback extractions and reviews separately - Maintained existing retry logic for other exception types * feat(benchmark): enhance session review statistics with fallback tracking - Add support for identifying and listing non-retryable fallback reviews - Introduce --list-fallback argument to display fallback review details - Separate retryable failures from non-retryable fallbacks in reporting - Track fallback samples and sessions separately from failed ones - Update console output to show both retryable and non-retryable categories - Include fallback details in JSON output with reasons and session info - Modify failure counting logic to distinguish between retryable and fallback reviews * feat(benchmark): add question_id tracking and enhanced fallback reporting - Add question_id function to extract query.question_id from data - Initialize question_id_by_id dictionary to store question IDs by index - Store question_id for each sample during data processing - Enhance fallback output to include question IDs and session information - Format sample labels with question IDs when available - Display session IDs associated with each fallback case * feat(benchmark): add question_id support and improve bad sample reporting - Add question_id_for function to extract question_id from multiple sources - Add sample_label function to format samples as idx(question_id) when available - Store question_id in data dictionary during processing - Change bad_golden and bad_sessions to store full records instead of just indices - Update list_bad output to show formatted labels with question_id information - Improve error reporting with more detailed sample identification * feat(benchmark): enhance golden check stats with structured output - Add related_session_ids function to extract session IDs from verdict records - Create grouped_records function to group records by question type - Replace flat list output with JSON-formatted grouped records in list_bad option - Replace flat list output with JSON-formatted grouped records in list_bad_sessions option - Maintain Chinese labels while adding structured data presentation - Improve readability of bad verdict record display with hierarchical grouping * feat(benchmark): update data structure for question indexing - Replace sample_label with _idx field for index tracking - Add question_id field to store _question_id values - Maintain backward compatibility with empty string defaults - Preserve existing session_id functionality - Update data mapping to include new fields in grouped results * refactor(benchmark): streamline golden answer verification process - Replace relevance filtering with comprehensive information extraction - Remove is_relevant field and simplify session summary structure - Change relevant_info to extracted_info for clarity - Update golden check logic to work with full extractions instead of filtered summaries - Simplify prompt instructions to focus on complete information extraction - Remove redundant schema validation and structured output requirements - Adjust statistics calculation to match new extraction approach - Update metadata field names to reflect extraction rather than relevance checking * feat(benchmark): add selective file deletion option to clean_sample_outputs - Add --filename argument to delete only specific root-level files - Modify iter_sample_targets function to accept optional filenames filter - Implement validation for root-level filename constraints - Update function calls to pass filenames parameter - Add example usage for selective file deletion in documentation * feat(benchmark): add error count metrics to golden check statistics - Added golden_bad, session_bad, and both_bad calculation fields - Updated console output format to include error counts per question type - Modified table display to show both accuracy rates and error numbers - Enhanced statistical summary with additional error breakdown metrics * test(search): update search step tests with include_source parameter - Added include_source=False parameter to VectorSearchStep initialization - Added include_source=False parameter to Bm25SearchStep initialization - Maintained existing RuntimeContext parameters for both search steps - Updated test calls to match new constructor signature with include_source option	2026-07-13 21:26:27 +08:00
jinliyl	b1c9bf67bf	fix(embedding): make input truncation CJK-aware (#337) ... * fix(embedding): make input truncation CJK-aware * test(embedding): cover CJK-aware truncation budget	2026-07-13 17:43:48 +09:00
Ziyang Guo	c5eefe4da3	fix(search): expose markdown frontmatter on chunks (#314) ... * fix(search): expose markdown frontmatter on chunks * style(search): apply pre-commit formatting * fix(search): make frontmatter chunk metadata opt-in * fixup! fix(search): expose markdown frontmatter on chunks * feat(markdown): add include_frontmatter_keys_in_metadata allow-list opt-in --------- Co-authored-by: RerankerGuo <1875366113@qq.com> Co-authored-by: Ziyang Guo <121015044+RunMarshal@users.noreply.github.com>	2026-07-08 17:59:55 +09:00
jinliyl	2612d25959	feat(lme): add cli execution and agentic search tooling (#334) ... * feat(service): add CLI service for local job execution - Introduce CliService to execute single jobs locally without serving ports - Add prepare_start_config and should_precheck_start functions for CLI job setup - Update reme start command to use CLI service when job argument is provided - Change default service backend from http to cli in jinli_lme config - Modify SearchStep to use constants and rename configuration parameters - Add unit tests for CLI service functionality and configuration handling - Update file extension support to include json format in addition to md and jsonl * feat(search): add BM25 and vector search steps with configuration updates - Add Bm25SearchStep and VectorSearchStep classes with tool context deduplication - Register new search step components in index module - Update configuration to use separate vector_search and bm25_search endpoints - Modify LLM models from qwen3.7-plus/glm-5.1 to glm-5.2 variants - Adjust search parameters and remove hybrid search implementation - Configure embedding store as default in storage settings - Remove auto-memory and file catalog configurations - Update watch directories from multiple paths to session_dir only * feat(agent): add tool result offloading and workspace management - Add tool_results_dir configuration option for offloaded tool results storage - Implement ToolResultOffloadMiddleware to persist large tool results to files - Create WorkspaceBackend to standardize file operations across tools - Add configurable builtin tools selection with sequential execution option - Integrate middleware support for agent wrapper with offloading capability - Update application initialization to create tool results directory - Add safety mechanisms for filesystem operations with sanitized filenames - Enhance agent wrapper with configurable working directory handling - Upgrade agentscope dependency to version 2.0.4 for improved features # Conflicts: # reme/application.py * feat(benchmark): add LongMemEval agentic search and result management - Introduce AgenticAnswerStep for agent-based history search - Add LmePrepareJudgeStep and LmeSaveResultStep for evaluation pipeline - Implement AddDraftStep and ReadAllDraftStep for evidence accumulation - Update configuration with new agent wrapper and search parameters - Add comparison script for analyzing agent run differences - Include documentation for LongMemEval failure analysis - Enhance tool result offloading with skip options - Modify search defaults and indexing behavior * feat(agent): implement tool result offloading with system reminders - Added tool_result_offload_message parameter to agent wrapper reply method - Implemented configurable reminder template for offloaded tool results - Created system reminder messages when tool results are offloaded to files - Added Chinese user message template for agentic answer step - Updated tool result offloading middleware to use custom reminder templates - Enhanced agentic answer instructions to handle long tool results via draft storage * feat(scripts): add LongMemEval results summarization tool - Create summarize_lme_results.py script to analyze result JSON files - Implement command line interface with answer id and dataset root options - Add support for specifying index range with start and end parameters - Include option to show failure details and non-successful completions - Calculate completion statistics and accuracy metrics - Display detailed breakdown of yes/no/other judgements - Handle missing and unreadable result files gracefully - Format output with percentages and comprehensive summary statistics * feat(summarize_lme_results): add question type breakdown to result summary - Import defaultdict from collections module - Add by_type dictionary to track statistics by question type - Count completed, yes, no, and other responses for each question type - Display detailed breakdown table showing accuracy by question type - Include question type column when processing judgements - Print comprehensive summary with question type distribution - Calculate and display accuracy percentage for each question type category * feat(lme): switch to qwen3.7-max model and add shuffle functionality - Changed default LLM model from glm-5.1 to qwen3.7-max in jinli_lme.yaml - Added random module import for shuffle functionality - Implemented --shuffle argument with BooleanOptionalAction for dataset shuffling - Added --seed argument to control random seed for reproducible shuffling - Applied random shuffle to dataset indices when shuffle is enabled - Added console output showing shuffle operation and seed information * fix(cli): set default random seed for shuffle functionality - Changed default seed value from None to 42 for consistent shuffling behavior - Ensures reproducible results when using shuffle option without explicit seed - Maintains backward compatibility while providing deterministic defaults * refactor(benchmark): update agentic answer guidelines for grounding - Updated English instruction to emphasize strict grounding in retrieved context - Modified Chinese instruction to stress evidence-based responses without inference - Removed redundant conciseness requirement in both language versions - Enhanced clarity on proper use of draft saving and retrieval mechanisms - Strengthened emphasis against hallucination of unsupported facts * refactor(benchmark): update agentic search instructions and configuration - Replace separate vector_search and bm25_search with unified search tool - Update agent instructions to use single search tool with multiple strategies - Simplify Chinese instructions for search methodology - Add comprehensive search tool configuration with hybrid vector/BM25 capabilities - Increase model retry attempts from 1 to 3 for better reliability - Remove redundant tool references from job_tools list * feat(search): add configurable search limit with environment variable support - Remove hardcoded limit and min_score parameters from config schema - Increase LLM context size from 200000 to 1000000 - Add REME_SEARCH_LIMIT environment variable support for search configuration - Implement command line argument --search-limit to override default search limit - Add input validation to ensure search limit is positive - Modify subprocess execution to pass environment variables - Update search step to use dynamic default limit from environment or fallback to 5 * refactor(benchmark): remove agentic answer step and related configurations - Removed AgenticAnswerStep class and its registration - Deleted agentic_answer.yaml prompt configuration file - Removed agentic answer related job definitions from jinli_lme.yaml - Cleaned up tool result offloading middleware implementation - Removed tool_results_dir configuration field from application config - Deleted comparison and analysis scripts for agent runs - Removed agentic answer step from LME init module exports - Updated agent wrapper to remove tool result offloading functionality - Removed unused imports and dependencies in agent wrapper module * refactor(benchmark): remove unused LME result processing components - Removed LmePrepareJudgeStep and LmeSaveResultStep classes from benchmark module - Cleaned up imports and exports in lme module initialization - Removed unused middleware configuration from agent wrapper - Deleted obsolete result.py file containing deprecated result processing logic - Simplified agent instantiation by removing middleware parameter - Updated import statements to reflect removed dependencies * refactor(index): remove unused search steps and update imports - Remove Bm25SearchStep and VectorSearchStep from index steps module - Remove unused prepare_start_config and should_precheck_start exports - Move import statements to proper location in reme.py - Update test module to use direct import path for CliService - Remove vector_search and bm25_search configurations from jinli_lme.yaml - Add workspace directory environment variable configuration - Add docstring to getcwd method in agent wrapper - Remove empty middleware list from agent wrapper initialization * feat(index): add BM25 and vector search steps with tool context deduplication - Add Bm25SearchStep for plain BM25 keyword search with tool_context deduplication - Add VectorSearchStep for plain vector search with tool_context deduplication - Implement tool context state management with TTL-based deduplication - Add support for chunk deduplication across tool contexts within TTL window - Update index steps module to include new search step classes - Add test coverage for CLI metadata output functionality - Refactor CLI service to remove unused show_status parameter - Update documentation comments to reflect internal service configuration * feat(steps): add Python code execution capability - Introduce PythonExecuteStep to run Python code in subprocess - Add configuration for python_execute step in jinli_lme.yaml - Register python_execute in available tools list - Implement timeout handling with default 60 second limit - Capture stdout/stderr output and return code metadata - Add comprehensive unit tests for execution scenarios - Support workspace directory context for code execution - Handle timeout errors and runtime exceptions gracefully * refactor(python_execute): replace subprocess with asyncio for Python code execution - Replace subprocess.run with asyncio.create_subprocess_exec for non-blocking execution - Add _PythonResult dataclass to encapsulate execution results and timeout status - Implement proper timeout handling with asyncio.wait_for and process.kill() - Update metadata to include returncode and stderr when timeout occurs - Convert synchronous _run_python method to asynchronous implementation - Maintain backward compatibility while improving execution reliability * refactor(python_execute): replace subprocess with asyncio for Python code execution - Replace subprocess.run with asyncio.create_subprocess_exec for non-blocking execution - Add _PythonResult dataclass to encapsulate execution results and timeout status - Implement proper timeout handling with asyncio.wait_for and process.kill() - Update metadata to include returncode and stderr when timeout occurs - Convert synchronous _run_python method to asynchronous implementation - Maintain backward compatibility while improving execution reliability	2026-07-08 17:43:09 +09:00
xyf2020	82971ac5b0	feat(chunker): better json chunker and json chunker (#325) ... * feat(file_chunker): add dedicated JSON and JSONL file chunkers - Add JsonFileChunker: structure-aware chunking preserving nested key paths, optional list-to-dict conversion, size measured by json.dumps() char count - Add JsonlFileChunker: line-aligned sliding-window chunking with configurable overlap, supports char/byte mode switching - Register both chunkers in default.yaml (json for .json, jsonl for .jsonl) - Add comprehensive unit tests (21 + 20 test cases) * chore(config): update default chunker supported_extensions to txt/log * refactor(json_chunker): optimize _build_tree O(n²) serialization and rewrite tests - Fix O(n²) redundant json.dumps in _build_tree: * Empty containers handled directly as leaves (0 serialization) * Non-empty containers recurse first, then reconstruct+dump once * Only containers that become leaves pay serialization cost - Add _reconstruct_object/_reconstruct_array helpers - Remove dead code: _merge_json method - Apply user changes: min_element_size formula 0.01->0.05, threshold < to <= - Use indent=None for compact output (consistent with _SizeNode estimation) - Remove unused _text_size from JsonlFileChunker Test rewrite: - Replace try/finally boilerplate with make_json fixture - Group tests into TestXxx classes with pytest.mark.parametrize - Add TestOutputValidation: 9 parametrized scenarios verifying: * All chunks are valid JSON * Text length <= chunk_chars (with single-leaf tolerance) * Leaf-value concatenation matches original data (dict + array roots) - Add TestSizeNode: incremental size accuracy tests - Add TestDfsAlgorithm: path wrapping, DFS order, calibration tests - Update test_min_element_size_formula for new 0.05 multiplier - Update test_build_tree_structure for larger min_element_size * chore: apply black formatting to test files	2026-07-08 15:18:59 +08:00
jinliyl	eb471d7d94	fix(embedding): reject mismatched embedding dimensions (#330) ... * fix(embedding): enforce strict dimension matching for embeddings - Add _embedding_dim_matches method to validate embedding dimensions - Reject embeddings with mismatched dimensions instead of padding/truncating - Drop stale embeddings with wrong dimensions during loading and upsert operations - Disable embedding store when query dimensions don't match configured dimensions - Fail health checks when embedding dimensions don't match expected values - Skip chunks with wrong dimensions during FAISS index rebuild - Add comprehensive tests for dimension validation behavior * refactor(file_store): simplify conditional checks in vector search and test assertions - Combine multiple conditionals into single check for empty FAISS index - Replace explicit empty list comparison with boolean check for node embedding calls - Maintain same functional behavior while improving code readability * fix(embedding): harden dimension validation helpers	2026-07-08 14:23:38 +09:00
jinliyl	38cf16071b	refactor(embedding): update embedding model initialization and session storage paths (#329) ... * refactor(embedding): update embedding model initialization and session storage paths - Remove unused inspect import from as_embedding module - Pass dimensions directly to embedding model constructor instead of using parameters - Update session state file paths to use mem_session directory instead of resource - Add mem_session_dir configuration option to application config schema - Update workspace directory creation to include new mem_session directory - Change AgentScope and Claude Code session paths to use mem_session directory - Move embedding dimensions from parameters to top-level configuration - Update AgentScope dependency version from 2.0.3 to 2.0.4 - Update integration tests to reflect new session file location paths * chore(version): bump version to 0.4.0.8 - Update __version__ from 0.4.0.7 to 0.4.0.8 in __init__.py	2026-07-08 12:30:46 +09:00
jinliyl	10da205797	feat(benchmark): add lme benchmark steps (#326) ... * refactor(search): replace time module with datetime for timestamp generation - Removed unused time import - Added static method _now_ts using datetime.timestamp - Updated clock parameter to use _now_ts method instead of time.time - Maintained same timestamp precision and functionality * test(http): add tests for HTTP client display formatting - Add test for default metadata hiding behavior in CLI output - Add test for metadata display when show_metadata is enabled - Verify _format_for_display method correctly formats response text - Test both success case and metadata inclusion scenarios * chore(build): remove longmemeval from gitignore - Removed longmemeval directory from gitignore list - Kept evaluation and datasets directories in ignore list - Updated gitignore configuration for proper version control	2026-07-07 18:53:39 +09:00
Sen Huang	0a7eea18f8	fix(as_embedding): support both agentscope 2.0.2 and 2.0.3 (#323) ... 2.0.3 promoted `dimensions` to a required first-class constructor argument while keeping a backfill from `parameters.dimensions`; 2.0.2 has no such argument and reads `dimensions` from `Parameters`. Keep `dimensions` in `Parameters` for both versions and, when the model constructor accepts `dimensions`, pass `dimensions=None` so 2.0.3's backfill promotes it out of `parameters`. Co-authored-by: Claude Fable 5 <noreply@anthropic.com>	2026-07-06 19:03:32 +08:00
jinliyl	7369342115	feat(search): add tool context deduplication and improve search configuration (#321) ... * feat(search): add tool context deduplication and improve search configuration - Modify _make_tool methods to accept and inject tool_context_id parameter - Add tool_context_id handling in AS and CC agent wrappers - Increase search candidate multiplier from 3.0 to 5.0 in default config - Extend HTTP client timeout from 30s to 3600s - Add tool context deduplication logic to prevent duplicate search results - Implement TTL-based expiration for seen chunks in tool contexts - Add comprehensive unit tests for tool context deduplication behavior - Update .gitignore to exclude longmemeval directory - Add time import for timestamp functionality in search step * refactor(search): replace time module with datetime for timestamp generation - Removed unused time import - Added static method _now_ts using datetime.timestamp - Updated clock parameter to use _now_ts method instead of time.time - Maintained same timestamp precision and functionality	2026-07-06 16:18:39 +09:00
xyf2020	43a407bc4f	feat: add start_date/end_date time filter support for search job (#317) ... * feat: add start_date/end_date time filter support for search job - Add _extract_date_from_path to extract validated YYYY-MM-DD from chunk paths - Add start_date/end_date filtering in _matches_search_filter - Implement progressive recall in FaissLocalFileStore.vector_search - Promote start_date/end_date from context to search_filter in SearchStep - Add start_date/end_date parameters to search job in default.yaml - Add unit tests for date filter functionality * fix: validate/normalize date filters and harden _extract_date_from_path Address three code-review comments on the time_filter search feature: 1. Validate/normalize start_date and end_date before string comparison. _matches_search_filter does lexicographic comparison against path_date (always canonical YYYY-MM-DD). Raw caller values like '2026-2-28' or 'abc' would produce silently wrong results. Now SearchStep normalizes valid dates via extract_daily_date (with strptime fallback for non-zero-padded input) and silently ignores invalid dates with a logger.warning, removing them from the filter. 2. Clarify behavior for paths without embedded dates. Added optional strict_date_filter parameter (default False). When True and at least one date bound is active, chunks whose path yields no date (e.g. digest/personal/topic.md) are excluded. When False (default), the existing behavior is preserved — dateless paths pass through. 3. Harden _extract_date_from_path against non-standard suffixes. Previously parts[1].split('.')[0] accepted '2026-05-18.anything' as a valid date. Now only exact 'YYYY-MM-DD' (dir) and 'YYYY-MM-DD.md' (day-index) forms are accepted.	2026-07-03 15:58:04 +08:00
Sen Huang	8877743ca9	feat(cli): route bare commands to the running server's real config (#312) ... call_server now resolves the client backend/transport/host/port from the live `reme start` process (replaying its start args through resolve_app_config) so a bare `reme <action>` reaches the server however it was actually launched, falling back to local config when none runs. Explicit backend=/transport=/host=/port= still win. Also fix as_embedding to pass `dimensions` explicitly for agentscope >=2.0.2, and add Claude Code auto-memory/auto-dream demos to the READMEs.	2026-07-01 17:15:48 +08:00
Sen Huang	3dee10d4f9	feat: add Claude Code plugin with auto-memory functionality (#297) ... * feat: add Claude Code plugin with auto-memory functionality * refactor(auto_memory): fix spacing in json parsing logic	2026-06-26 14:46:42 +08:00
jinliyl	ad7893e9c4	fix(mcp): resolve circular import issues and update dependencies (#296) ... * fix(mcp): resolve circular import issues and update dependencies - Moved fastmcp imports inside functions to prevent circular dependencies - Replaced _TRANSPORT_MAP with _VALID_TRANSPORTS set for transport validation - Updated version number from 0.4.0.3 to 0.4.0.4 - Added claude-agent-sdk dependency to core optional dependencies - Used TYPE_CHECKING imports for FastMCP related types - Restructured transport mapping logic within function scope - Fixed string annotation for CallToolResult type hints * refactor(tests): update date handling in daily steps tests - Replace _date.today() with timezone-aware now function - Use Asia/Shanghai timezone for date formatting - Change return format to use strftime instead of isoformat - Import now function from reme.steps.evolve module * refactor(tests): clean up unused imports in daily steps test - Removed unused date import from datetime module - Removed redundant pathlib Path import that was already imported later - Kept necessary imports for asyncio, os, tempfile, warnings, and frontmatter modules * test(daily_steps): update test to include application context for daily list step - Add ApplicationContext initialization with temporary workspace directory - Register file store component in application context - Pass application context to DailyListStep constructor - Maintain existing test assertion behavior for date metadata verification	2026-06-26 09:37:08 +08:00
jinliyl	afe12b16db	feat(file_store): add embedding backfill for persisted chunks (#292) ... - Implement _backfill_missing_embeddings method to handle chunks without embeddings - Add logic to identify and process chunks that predate embedding feature - Integrate backfill process into store loading sequence - Add proper error handling and logging for backfill operations - Create unit test for embedding backfill functionality - Ensure backfilled embeddings are properly persisted to storage	2026-06-24 17:32:21 +08:00
jinliyl	7d86658f33	Refactor logging levels and add dream schema definitions (#291) ... * chore(logging): change info logs to debug level for data loading operations - Changed stopwords loading log from info to debug level - Changed file catalog nodes loading log from info to debug level - Changed file graph nodes loading log from info to debug level * feat(dream): add dream schema definitions and enum for auto-dream functionality - Add DreamBucketEnum with procedure, personal, and wiki values - Create comprehensive dream-related Pydantic models including DreamUnit, DreamTopic, DreamExtractOutput, IntegrateOutcome, TopicSelectionOutput, ProactiveResult, and DreamState - Move schema definitions from local step module to shared schema package - Update dream extraction and integration steps to use new enum-based bucket validation - Initialize digest directories for each dream bucket type - Enhance embedding store health check with workspace directory logging * refactor(tests): update DreamState import path in test_auto_dream.py - Move DreamState import from reme.steps.evolve.dream.schema to reme.schema - Maintain same functionality with updated module reference - Align import with new schema location in project structure	2026-06-24 16:44:03 +08:00
jinliyl	a3bd81bde2	Update version to 0.4.0.2 and improve tokenizer index handling (#290) ... * fix(core): update version number to 0.4.0.1 - Incremented version from 0.4.0.0 to 0.4.0.1 in __init__.py * fix(index): remove stopwords path from tokenizer config and add keyword index repair - Remove stopwords_path from tokenizer config to prevent index forking by install path - Add _sync_keyword_index_from_chunks method to repair keyword index when persisted state mismatches - Implement test for keyword index repair from persisted chunks when missing - Add test to verify tokenizer fingerprint ignores stopwords absolute path - Update version from 0.4.0.1 to 0.4.0.2 * feat(dream): add scan_days parameter to dream extraction process - Add scan_days configuration option to default.yaml with default value of 2 - Implement recent_dates utility function to calculate date ranges for scanning - Modify DreamExtractStep to scan multiple days based on scan_days parameter - Update dream extraction to process files across multiple dates instead of single day - Extend DreamState schema to include dates and scan_days fields - Update DreamTopicsStep to handle multi-day topic processing - Modify finish step to checkpoint files from all scanned dates - Add comprehensive tests for multi-day scanning functionality - Update prompt templates to include scan dates information - Refactor topics writing logic to target specific date rather than current date	2026-06-24 15:01:07 +08:00
Sen Huang	e31db5fe19	docs: rename vault_dir to workspace_dir in documentation and examples (#286) ... * docs: rename vault_dir to workspace_dir in documentation and examples * refactor(extract): format long method call across multiple lines * refactor(extract): format system prompt parameters for better readability	2026-06-22 16:58:57 +08:00
jinliyl	206a53e5ed	init: reme version 0.4.0 (#284)	2026-06-22 15:41:19 +08:00