* feat: add Neo4j file graph support and markdown parser with wikilink extraction
- Add Neo4jFileGraph implementation for property-graph storage with
virtual/real node handling and link management
- Introduce LinkedFileParser for markdown files with frontmatter,
wikilink graph extraction, and full-skeleton chunking
- Update pyproject.toml to include pyyaml, mistletoe, and neo4j
dependencies
- Modify .gitignore to exclude /vault and structure.md
- Change reme CLI entry point from reme_ai.main to remecli.reme
- Register new neo4j and md components in respective registries
* refactor(file-graph): add chunk_ids support to Neo4jFileGraph
Add chunk_ids field to File node properties in Neo4jFileGraph to
enable better content chunk tracking and management.
BREAKING CHANGE: File node schema now includes chunk_ids property
which may affect existing integrations.
feat(parser): implement wikilink resolution logic
Move path resolution logic from utils/path_resolver to
linked_file_parser module and enhance wikilink resolution with
folder-note rule support and improved error handling.
fix(tests): update test assertions and variable names
Update test cases to reflect changes in data structures and
variable naming conventions across various components.
chore(config): update package entry point reference
Change reme CLI entry point from remecli.reme:main to
reme_ai.reme:main in pyproject.toml.
refactor(utils): remove deprecated path_resolver module
Remove the old path_resolver utility module as its functionality
has been moved to linked_file_parser.
docs(file-graph): update Neo4jFileGraph documentation
Update class docstrings and comments to reflect new chunk_ids
property and other structural changes.
style(formatting): adjust code formatting and line breaks
Minor formatting improvements including line length optimization
and consistent spacing adjustments throughout the codebase.
* fix(pyproject.toml): correct entry point for reme command
Change the entry point from "reme_ai.reme:main" to "reme_ai.main:main"
to fix the module reference for the reme command in project scripts.
