* feat: rename working_dir to vault_dir and update documentation
- Rename working_dir to vault_dir across the application
- Update documentation to reflect vault_dir instead of working_dir
- Change FileFrontMatter title field to name field
- Update .gitignore to include vault directory
- Modify file path descriptions to reference vault instead of working_dir
- Update related configuration and property names accordingly
* refactor(steps): rename working_path to vault_path in CRUD operations
- Rename parameter from `working_path` to `vault_path` in `resolve_path` function
- Update all usages in append, edit, read, and write steps to use `self.vault_path`
- Update documentation comments to reflect the new parameter name
- Update docstring in read.py to mention `vault_dir` instead of `vault`
test(chunked_file_parser): update frontmatter field from title to name
- Change frontmatter field from `title` to `name` in test cases
- Update comment in background steps test to reference `vault_path` instead of `working_path`
* refactor(schema): remove unused ResourceEntry import
* feat(file_graph): add link scope filtering to get_inlinks/get_outlinks
* feat(file-store): add scope parameter to link methods
