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16 commits
| Author | SHA1 | Message | Date | |
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xyf2020
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06fb46fa48
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feat(tags): add configurable tag indexing and filtered hybrid search (#530)
* Add optional tag generation and normalization to auto memory * Add tag index components and clean up temporary JSONL files * Preserve tag index state when reconciliation fails * Refactor and streamline application implementation * Fix pylint C1803 warnings in tag normalization tests * Document optional tag index configuration * Make tag index failures non-blocking and disable auto-memory tags * Add configurable tag indexing and tag listing * Add tag-filtered hybrid search with exact candidate ranking * Remove obsolete generated files * Rename tag index key to tag_key and reject reserved fields * Extract automatic tagging into a dedicated step * Restrict frontmatter updates to authorized keys * Refine tag filtering and automatic memory tagging * Require underscore-separated tags in auto-tag prompts - Forbid spaces in tags and require underscores (e.g. sam_altman) in both English and Chinese auto_tag prompts, with English examples switched to English entities (OpenAI, gold) - Drop prompt-string assertions superseded by the new tagging rule - Merge construction/runtime tag_key validation tests into one parametrized case * Make max_tags_per_file configurable in auto-tag step * Consolidate tag index tests * Fix search test fixture lint warnings * Align tag contracts and index health behavior * Fall back when tag index is unavailable --------- Co-authored-by: jinli.yl <jinli.yl@alibaba-inc.com> |
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xyf2020
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f04eedb3ab
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feat(Tag filter): Add an optional rebuildable tag index for file frontmatter (#517)
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* Add optional tag generation and normalization to auto memory * Add tag index components and clean up temporary JSONL files * Preserve tag index state when reconciliation fails * Refactor and streamline application implementation * Fix pylint C1803 warnings in tag normalization tests * Document optional tag index configuration * Make tag index failures non-blocking and disable auto-memory tags * fix(tag-index): fail closed and support reindexing * fix(tag-index): preserve complete query expressions --------- Co-authored-by: jinli.yl <jinli.yl@alibaba-inc.com> |
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jinliyl
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fc4a5398a8
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fix(index): make embedding rebuild explicit and scoped (#508)
* fix(index): make embedding rebuild explicit and scoped * fix(index): harden scoped reindex completion * fix(index): guard embedding space transitions * fix(index): serialize reindex with mutations * docs(index): clarify scoped reindex semantics * docs(index): explain synchronous checkpoint snapshots * fix(index): serialize checkpoint publication |
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jinliyl
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1a6b584274
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fix(persistence): avoid duplicate index dumps (#489)
* fix(persistence): avoid duplicate index dumps * fix(persistence): align dumps with component ownership * fix(persistence): preserve subclass dump hooks |
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jinliyl
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c8e1248769
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fix: recover embeddings after transient health check failure (#471)
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* fix: recover embedding after transient health failure * refactor(embedding_store): remove provider_success_count and simplify health recovery logic - Deleted provider_success_count attribute and related methods across embedding and file stores - Updated _recover_after_real_request to rely solely on is_healthy flag for recovery decisions - Removed redundant counting logic for provider successes during embedding operations - Cleaned up health status management to streamline provider recovery detection - Adjusted unit tests to align with removal of provider_success_count and maintain health checks consistency * refactor(embedding_store): use default health check timeout * fix(embedding_store): ensure is_healthy remains unchanged on cache hits - Updated get_embeddings docstring to clarify cache hits must not alter is_healthy state - Improved code comment for embedding dimension matching method * fix(file_store): make embedding recovery race-safe * ci: use default CodeQL query suite * fix(file_store): preserve queued embedding rebuilds * fix(file_store): preserve verified recovery without chunks |
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lichen2015
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ad4f23e4dc
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feat(file_store): add ZvecLocalFileStore backend (#410)
* feat(file_store): add ZvecLocalFileStore backend - Implement ZvecLocalFileStore with native zvec collection for ANN search. - Keep JSONL chunks as the source of truth; rebuild collection from chunks when sidecar digest/dimension/HNSW M mismatch is detected. - Add dedicated unit tests in tests/unit/test_zvec_file_store.py. - Parametrize existing file_store consistency tests to cover both LocalFileStore and ZvecLocalFileStore. - Register the new backend in reme/components/file_store/__init__.py. * fix(file_store): fix zvec collection sync and content validation, declare zvec dependency |
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xyf2020
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4eb2adf961
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feat(faiss_file_store): upgrade FAISS to HNSW index with async reindex (#390)
* feat(file_store): upgrade FAISS to HNSW index with async reindex and path constraint - Replace IndexFlatIP with IndexHNSWFlat for better recall/speed tradeoff - Add dynamic efSearch (limit * 5) scaled to query request size - Add async_reindex option: background rebuild with generation-based invalidation - Extract _delete_nodes() in LocalFileStore for subclass reuse - Add unit tests for file store consistency * fix: resolve pylint warnings in faiss store and test file * refactor(file_store): replace generation-based reindex with event-flag worker - Replace _reindex_generation/lock/task with a single long-lived worker coroutine consuming an asyncio.Event flag; repeated submissions coalesce - Use local index reference in vector_search to avoid TOCTOU on self._faiss_index - Pass index explicitly to _set_ef_search for consistency - Track _index_writes to re-arm reindex after concurrent writes - Update tests to match new internal API * fix: resolve pylint too-many-return-statements and implicit-booleaness warnings * feat(file_store): add refine maintenance hook and incremental embedding backfill - Add refine() idle-time maintenance hook to BaseFileStore/LocalFileStore - FaissLocalFileStore: incremental vector add on backfill instead of full rebuild - Dynamic tombstone compaction threshold scaled by index size - Add RefineStoreStep with daily cron job (refine_store_cron) - Enable faiss backend and embedding_store by default in default.yaml - Add unit tests for faiss index maintenance * chore(deps): promote faiss-cpu to core dependencies faiss backend is now the default file_store, so faiss-cpu moves from the optional [core] extra to the base dependencies list. * feat: rename refine_store to optimize_index and add vecdb_path_constraint - Rename refine_store step to optimize_index with cron job scheduling - Add vecdb_path_constraint to file_store components - Update default.yaml with optimize_index_cron and faiss backend comment - Update memory_search docs (en/zh) for FAISS vector management - Update unit tests for index maintenance * feat(faiss): add embedding digest to reject stale sidecar after partial dump Add _chunks_embedding_digest() that computes an order-independent SHA-256 over (chunk_id, float16 embedding) pairs. The digest is written into the idmap sidecar at dump time and verified at load time. A mismatch means the sidecar vectors belong to a different chunk generation than the authoritative JSONL — detectable even when the live-ID set is unchanged (same-ID in-place update crash window). Add test_faiss_rejects_stale_sidecar_after_partial_dump reproducing the crash-between-writes scenario and asserting digest-based rejection. Compress verbose docstrings/comments in existing tests for pylint line budget. --------- Co-authored-by: sa-buc <jiangniurou.xyf@dail-algo011164204033.ET135> |
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jinliyl
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1687179f84
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feat: add Auto Fin cookbook and managed outbound proxy support (#392)
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* feat: add ssh proxy * feat: add ssh proxy * feat: add ssh proxy * feat: add ssh proxy * feat: add prompt * feat: add agent wrapper * feat: add agent wrapper * feat: add agent wrapper * feat: add tushare skill * feat: add tushare skill * feat: add tushare skill * feat: add none stream * chore(deps): update dependency versions in pyproject.toml - Bump claude-agent-sdk from 0.2.123 to 0.2.126 - Upgrade pre-commit to version 4.6.1 or higher - Upgrade pytest to version 9.1.1 or higher * feat(agent_wrapper): add session compaction support and unify session commands - Introduce compact_session method to BaseAgentWrapper and implement it in AsAgentWrapper, CcAgentWrapper, and CodexAgentWrapper - Add session_command module with SessionCommandResult dataclass and handle_session_command function for /clear and /compact commands - Update __init__.py exports to include session_command handlers - Modify DingTalkWaitStep to handle session commands via handle_session_command function - Remove streaming mode from DingTalkWaitStep and simplify reply handling to final Markdown replies only - Add unit tests for session compaction methods and session command handling across wrappers and DingTalk integration - Clean up and remove obsolete streaming and card rendering code from DingTalk wait step - Adjust daily_cookbook.yaml to remove stream and card_update_interval config entries for DingTalk wait step * feat(auto_fin): add Auto Fin simulated portfolio cookbook workflow - Add comprehensive Auto Fin schema exports for multiple models and enums - Implement base class and helpers for Auto Fin analysis steps - Create file, state, and formatting utilities for Auto Fin with atomic file writes and locking - Define Auto Fin pipeline with four analysis agents: backtest, event, portfolio, and US correlation - Register Auto Fin package in cookbook workflows and schema initialization - Add detailed documentation in markdown describing the system design, workflow, and data contracts * feat(outbound_proxy): add application-scoped outbound HTTP proxy components - Introduce BaseOutboundProxy and OutboundProxyEndpoint as core contracts - Implement FixedHttpOutboundProxy for external HTTP proxy integration - Add SshHttpOutboundProxy providing SSH-backed local HTTP proxy tunnels - Register outbound proxy components in component registry and enumeration - Update components package to include outbound_proxy module - Add dependency on pproxy for SSH HTTP proxy bridging - Include comprehensive unit tests covering proxy lifecycle, validation, environment merging, error handling, readiness, and monitoring mechanisms * refactor(network): replace SSH proxy with explicit HTTP outbound proxy - Remove SSH proxy helper implementation and references in codebase - Add support for explicit HTTP proxy URL in arXiv and HuggingFace clients - Modify clients to use async context manager for consistent resource handling - Update daily paper steps to forward outbound proxy configuration explicitly - Change tests to cover new proxy usage model and remove SSH proxy mocks - Add outbound proxy component configuration in daily_cookbook.yaml - Ensure proxy URL usage disables environment trust in HTTP clients - Fix app context component enum access to be defensive against missing keys * feat(agent_wrapper): add managed proxy support for command environments - Introduce BaseOutboundProxy binding in BaseAgentWrapper for outbound proxy management - Add bash_environment and command_proxy_environment properties to apply proxy settings - Update WorkspaceBackend instantiation in AsAgentWrapper to use bash_environment - Inject managed proxy export commands into Claude Code Bash commands via hooks - Enhance CodexAgentWrapper to include managed proxy in shell environment policy - Modify daily_cookbook.yaml steps to specify outbound_proxy as default where needed - Add comprehensive unit tests verifying managed proxy injection and environment isolation - Ensure subprocess_environment remains unchanged while proxy is applied selectively to commands * refactor(memory): replace search job_tools with memory in daily cookbook config - Change workspace_dir default from .reme to reme_workspace - Replace search job_tools with memory across multiple components and jobs - Update descriptions to reflect long-term memory retrieval instead of search - Modify system prompts to instruct using memory for retrieving notes - Adjust unit tests to verify memory job_tools and job presence instead of search - Ensure consistency in configuration and tests for memory backend usage * refactor(config): rename memory to memory_search in daily cookbook config - Change all occurrences of "memory" to "memory_search" in job_tools and job definitions - Update related system prompts to reflect the new memory_search terminology - Modify unit tests to assert the presence of memory_search instead of memory - Ensure consistency across skills, job tools, and backend configurations in multiple components * feat(auto_fin): add deterministic quantitative research and ranking fusion - Introduce new schema models: EtfScore, RankingMetrics, ExtremeAnalysis, DimensionRanking, and FusionRanking to represent deterministic research outputs - Add ranking data to event, backtest, us_correlation, and portfolio analysis outputs - Implement ranking_section renderer to format Top20 scores and diagnostics in Markdown - Develop AutoFinQuantStep for deterministic ETF ranking using TuShare data, Polars, and a custom extremely randomized tree ensemble - Integrate quantitative rankings into backtest and portfolio analysis steps and reports - Extend auto_fin pipeline with new quant_enabled and quant_required config options - Enforce ranking constraints like unique codes, contiguous ranks, and normalized fusion weights - Update analysis YAMLs with rules limiting data freshness, universe, and ranking usage - Incorporate ranking outputs into all major markdown report bodies in Auto Fin pipeline - Add concurrency-limited asynchronous TuShare client to fetch required market data - Introduce cross-sectional rank correlation and NDCG metrics for ranking quality evaluation * feat(auto_fin): implement stage-wise notification and reporting for analysis pipeline - Refactor notification config in daily_cookbook.yaml to support dispatch steps - Update AutoFinNotificationStep to deduplicate notifications per run stage - Add _notify_stage method in pipeline to send notifications for each analysis stage - Implement persistence and notification for event, backtest, US correlation, and portfolio stages - Modify pipeline flow to persist reports and notify after each stage completion - Adjust metadata to track notifications and errors per stage - Update tests to verify stage-wise notification sending and deduplication - Remove older combined report persistence in favor of modular stage handling * feat(auto_fin): add outbound proxy support for Tushare API usage - Introduce BaseOutboundProxy reference in AutoFinPipelineStep and AutoFinQuantStep - Update TushareResearchClient and trade calendar fetch to accept and use proxy URL - Create _ProxiedTushareApi adapter to route Tushare requests via explicit HTTP proxy - Modify create_tushare_api utility to optionally return proxied API client - Add unit tests covering proxy forwarding and client behavior with managed proxies - Ensure proxy usage respects explicit proxy URL over environment fallback - Integrate outbound proxy into data fetching and quantitative research steps * feat(auto_fin): enforce checkpoint time validation and add state models - Introduce AnalysisState base class and specific states for event, backtest, and US correlation analyses - Replace analysis output types with corresponding state classes in run schemas - Add require_checkpoint_reached method to validate decision_at/data_cutoff against current time - Enforce checkpoint time checks before analysis steps in event, backtest, portfolio, and quant analyses - Refactor quant data loading to include adjustment factors and apply price adjustments without fallback - Update analysis YAML docs to require real-time checkpoint validation and forbid using future data - Improve portfolio run serialization by excluding redundant legacy fields and nested proposed actions - Add helper to extract readable sections from persisted checkpoint documents - Fix event analysis output validation to reject events and sources with future timestamps * feat(auto_fin): auto-select latest reached checkpoint if none specified - Extend checkpoint config to accept empty string for auto selection - Add static method to compute latest checkpoint reached by current time - Modify pipeline step to auto-select checkpoint based on trade calendar and time - Adjust force flag default depending on whether checkpoint is explicit or auto - Log details when checkpoint is auto-selected to improve observability - Add comprehensive tests for auto checkpoint selection logic and edge cases - Remove deprecated default and required constraints from force parameter in config * refactor(auto_fin): unify datetime comparison with compare_datetimes utility - Replace direct datetime comparisons with compare_datetimes function calls - Use cmp_to_key with compare_datetimes for sorting datetime tuples and lists - Update validation logic in backtest, event, analysis, and ledger modules for consistent datetime handling - Add unit tests to verify handling of naive and aware datetime comparisons in event and backtest validations - Ensure marked_at and interval_end timestamps are set and compared consistently using compare_datetimes - Improve correctness of ordering and conditional checks related to timestamps throughout auto_fin steps and ledger code * feat(auto_fin): add datetime comparison helper for mixed timezone data - Implement compare_datetimes function to handle naive and aware datetimes - Ensure naive datetime is interpreted in the known timezone of the counterpart - Facilitate comparisons between legacy and timezone-aware Auto Fin data - Add module docstring explaining purpose of the helpers * docs(auto_fin): enforce unique ETF representative per sub-theme in analysis rules - Update backtest.yaml to recommend or highlight only one ETF per sub-theme for ETF analyses - Modify event.yaml to map only one representative ETF per sub-theme, avoiding duplicate recommendations - Revise portfolio.yaml to restrict holdings/buys to a single ETF per sub-theme, preventing repeated buys of highly overlapping ETFs - Adjust us_correlation.yaml to retain only one representative A-share ETF per sub-theme for mapping or recommendation - Add test to verify presence of new sub-theme uniqueness guidance in step prompts * feat(auto_fin): separate draft model and include deterministic fusion ranking - Introduce _PortfolioProposalDraft pydantic model for agent-authored fields before ranking - Discard any "fusion_ranking" data from draft to prevent conflicts with canonical ranking - Modify AutoFinPortfolioStep to receive draft, enrich with fusion_ranking, and produce final output - Update tests to use _PortfolioProposalDraft and validate deterministic fusion ranking propagation - Add async test verifying fusion ranking is correctly set in portfolio output with no errors * refactor(auto_fin): rewrite and simplify Auto Fin schema and steps - Remove legacy Auto Fin analysis step modules and helpers - Replace complex ranking and portfolio models with simplified current-news models - Update schema to focus on news-case workflow with new domain models - Remove A-share decision checkpoints and backtest details from schema - Simplify recommendation and decision output structures - Clean up deprecated state and utility functions - Update Auto Fin steps initialization to new pipeline steps only - Improve uniqueness validation for themes and ETFs in research plan * feat(auto_fin): implement full local cache and analysis workflow for Auto Fin - Add AutoFinDataStep to prepare and cache daily TuShare data with lookback - Add AutoFinAnalysisStep to analyze cached data and generate Markdown report - Implement detailed time window, ETF filtering, and historical case validation - Introduce YAML prompts for planning and decision-making steps - Update .gitignore to include reme_workspace/ - Clean up config and import structure for auto_fin steps - Remove old pipeline.py and consolidate functionality into new modules - Use polars for efficient CSV reading and data processing - Ensure atomic writes and strict JSON serialization for cache files - Enforce rules on news timing, ETF universe, and historical case usage * fix(auto_fin): restrict news data source to '财联社' in analysis and cache - Update analysis templates to specify current news as from '财联社' only - Modify news fetching functions to filter by source '财联社' - Add validation method to check cached news source correctness - Update news caching logic to exclude non-'财联社' news - Enhance unit tests with multiple sources to ensure filtering works - Confirm news API calls include source filter parameter as '财联社' * refactor(auto_fin): convert I/O methods to asynchronous implementations - Change _news, _dataset, and _theme_data methods to async for improved concurrency - Move JSONL and CSV reading operations to asynchronous wrappers using asyncio.to_thread - Remove synchronous _read_jsonl and _read_csv functions, integrate them as static async class methods - Update cache validation methods to async, awaiting I/O operations accordingly - Adjust usage of dataset and news retrieval in analysis step to await asynchronous methods - Add async unit test to validate JSONL reading with unicode line separators - Preserve existing functionality while enabling non-blocking file and data access * fix(nx_file_graph): defer networkx import and improve dependency handling - Move networkx import inside NxFileGraph constructor for lazy loading - Raise ImportError with original exception context if networkx is missing - Remove module-level fallback assignment of nx to None - Expand test to block loading of multiple optional core dependencies eagerly - Change exception type in test from ModuleNotFoundError to AssertionError - Update test comments to reflect broader optional dependency checks * feat(embedding_store): add quota retry delay mechanism for embedding requests - Introduce quota_retry_delay parameter to configure wait time before retry on quota exhaustion - Implement detection of insufficient quota errors in LocalEmbeddingStore without external SDK - Add retry logic with custom delay when quota is insufficient during embedding requests - Update configuration to set max_retries and quota_retry_delay defaults for embedding store - Add unit tests covering quota exhaustion retry behavior with delay and opt-in control - Ensure existing retry behavior remains unchanged if quota_retry_delay is not set * feat(auto_fin): add detailed logging to analysis and data fetching steps - Add _preview static method for bounded diagnostic output in analysis.py - Log prompt start, completion, errors, and validation details in _reply method - Add info logs for major processing steps in execute method of analysis.py - Add debug and info logs for cache validation, data fetching, and pagination in data.py - Log conditions for skipping reports and cache plans in data.py execute method - Log download summaries and cache writes for news and ETF data - Improve error logging with exception details in cache validation functions - Ensure all logs include context such as record counts, paths, and parameters * refactor(auto_fin): overhaul Auto Fin workflow and schema contracts - Replace old Auto Fin schema models with comprehensive new data classes - Remove legacy Auto Fin analysis step in favor of modular agent-based steps - Introduce AutoFinAgentStep for validating structured agent replies - Simplify data cleaning and JSONL writing utilities for news cache - Remove synchronous and asynchronous dataset methods from analysis step - Redefine Auto Fin analysis configuration for 360-day news retention and multi-step pipeline - Remove embedded analysis prompt templates and replace with agent-driven logic - Update __init__.py exports to match new step implementations and remove deprecated classes - Improve error handling and validation in agent step reply processing - Clean up redundant imports and unused code in analysis and data preparation modules * feat(auto_fin): add detailed logging for analysis and data processing steps - Add timing logs to measure agent prompt processing duration in analysis.py - Log news cache hits and news write paths with record counts in data.py - Include detailed info logs for news download start and completion in data.py - Add start, progress, and completion logs with topic and event counts in history.py - Log start and completion of merge step including path and ETF count in merge.py - Add start and done logs with window and news counts in topic.py * feat(auto_fin): enhance schema and steps with detailed ETF and event modeling - Replace and add multiple AutoFin schema classes to support detailed ETF selection, historical research, market analysis, forecast models, and report output with validation - Implement Shanghai timezone normalization and strict validation in schema models - Remove deprecated AutoFin analysis agent step and consolidate reply handling in base step - Introduce AutoFinStep base class with shared helpers for prompt handling, data fetching, logging, and JSONL file operations - Add AutoFinDataStep to manage daily news data complete with schedule validation, caching, and source validation logic - Update cookbook configuration to customize auto_fin step parameters and simplify outbound proxy settings - Refactor imports and clean unused code for better maintainability * feat(auto_fin): introduce detailed historical event resolution and market similarity analysis - Add AutoFinHistoricalEventReference and AutoFinHistoricalSimilarity models for refined event referencing and similarity judgment - Implement validation to ensure non-empty critical fields and uniqueness of historical news IDs - Develop method to resolve Agent-selected historical event references from workspace files with strict path and existence checks - Enrich historical events with market entry and future returns data after resolution - Redesign market step to calculate similarity-weighted ETF forecasts based on matched historical event similarities - Enforce validation on matched historical events for uniqueness and proper weight summation - Simplify merge step output to final Markdown report without YAML frontmatter and redundant fields - Update user instructions for history search, market, and merge steps to reflect new data structures and responsibilities - Adjust test suite to cover new schema and step behavior changes, including enhanced validation and JSON output formats * feat(auto_fin): add new cron jobs and output analysis jsonl - Add new cron jobs auto_fin_1145_cron and auto_fin_1800_cron with auto_fin_steps - Change auto_fin_0930_cron schedule to run Monday to Sunday - Extend merge step to write analysis data to auto_fin_analysis.jsonl - Update unit tests to verify new cron jobs and their steps configuration * fix(auto_fin): improve atomic file write and refresh daily index - Change temporary file naming to include UUID for uniqueness and hidden prefix - Replace atomic write method from using Path.replace to os.replace with safe unlink - Add import and use os.replace for safer file replace operation - Refresh daily index after writing auto finance markdown and JSONL files - Import and call refresh_day_index in merge step to update file index asynchronously * docs(cookbook): add optional SSH proxy configuration in README files - Introduce optional SSH proxy setup in auto-fin and daily_paper cookbooks - Provide instructions to enable outbound proxy via `daily_cookbook.yaml` and environment variables - Add `REME_PROXY_IP` and `REME_PROXY_ACCOUNT` environment variables descriptions in multiple README files - Update English and Chinese README and README_ZH documents with proxy details - Maintain consistent formatting of environment variable tables across documents * fix(file_io): include schema_version in hidden metadata keys - Added "schema_version" to _INDEX_HIDDEN_METADATA_KEYS in _daily_index.py - Updated _render_notes_block to always include additional keys regardless of schema_version fix(deps): move pproxy dependency to later in pyproject.toml - Removed pproxy from early dependencies list - Added pproxy back near the end of dependency list for better ordering fix(outbound_proxy): require pproxy package for ssh_http proxy - Added importlib.util check for pproxy package presence - Raise RuntimeError if pproxy is not installed when using SSH HTTP outbound proxy - Improved error message suggests installing reme-ai with 'core' extra * docs(readme): update News section with new Cookbook workflows - Clarify introduction of optional Cookbooks with Daily Paper and Auto Fin workflows - Update English README to reflect both paper discovery and file-native ETF event research - Revise Chinese README to include financial news and historical market data research capability - Maintain announcement of paper acceptance at Findings of ACL 2026 * feat(auto_fin): add calculation results to final Markdown output - Implement _calculation_results to summarize forecast for each ETF analyzed - Include program-calculated results in the JSON input for the Markdown report - Update YAML template to incorporate calculation results and adjust recommendation rules - Refine recommendation logic to rely on event impact judgments combined with calculation outputs - Modify tests to verify presence of calculation results and updated report content and format * up prompt * fix(keyword_index): ignore non-indexable chunks during keyword sync - Add is_indexable method to base and BM25 keyword index classes to check text tokenizability - Update local file store to exclude non-indexable chunks from expected document IDs to prevent rebuild - Fix JSONL chunker to correctly handle Unicode line separator U+2028 inside JSON strings without splitting - Add test to ensure non-empty but non-indexable chunk does not trigger keyword index rebuild - Add test to verify U+2028 character does not cause incorrect JSONL record splitting |
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jinliyl
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cf22ef3b1d
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feat: add codex auth modes, background embedding/index repair, and qwenpaw logging (#371)
* feat(codex): add authentication mode support with thread-safe logging - Implement _CodexAuthConfig dataclass for resolved auth settings - Add auth_mode parameter with auto/api_key/oauth options - Separate API key and OAuth authentication flows - Force specific login method based on auth mode - Add explicit API key validation requirement - Serialize concurrent logger initialization in thread lock - Close logging handlers properly during cleanup - Update default config with auth_mode presets for codex and codex_oauth - Add comprehensive tests for authentication modes and concurrent logging * feat(file_store): implement background embedding backfill and keyword index repair - Add _after_embedding_backfill hook in FAISS local file store - Schedule startup embedding repair without delaying component readiness - Cancel and collect embedding backfill task during component shutdown - Log progress at fixed percentage boundaries for long-running operations - Process embedding backfill in configurable batch sizes with progress reporting - Rebuild keyword index in bounded batches with detailed mismatch diagnostics - Format stdlib logs consistently with QwenPaw console output using relative paths - Run embedding backfill as background task that doesn't block component startup - Add comprehensive tests for background embedding and keyword index repair scenarios * fix(file-store): repair graph-chunk consistency on load - Add _repair_graph_chunk_consistency method to detect and fix mismatched graph/chunk states - Clear torn graph/chunk state when missing or orphaned chunks are detected - Ensure keyword index sync handles empty chunks properly - Add comprehensive tests for graph-chunk consistency scenarios - Update test utilities to properly seed graph/chunk snapshots - Increment version to 0.4.1.2 * feat(file_io): enhance list step response format and add comprehensive logging - Format list output with bullet points for better readability - Add explicit "No files found" message when directory is empty - Include detailed timing information for file store startup phases - Add logging for chunk loading, graph consistency checks, and keyword indexing - Provide detailed metrics for embedding backfill operations - Add comprehensive test coverage for empty directory scenarios - Include batch processing statistics for embedding operations * feat(logger): add QwenPaw logging integration with forwarding mechanism - Introduce _ForwardToLoggerHandler to forward log records to target logger - Add qwenpaw logger integration that forwards ReMe logs to QwenPaw handlers - Maintain ReMe logger stability for modules that cache it at import time - Enable QwenPaw handlers to take effect without ReMe reconfiguration - Add comprehensive tests for stdlib forwarding to QwenPaw sinks - Support explicit REME_DISABLE_LOGURU=false to keep original Loguru backend - Preserve existing logging behavior when QwenPaw is not configured * fix(file_store): serialize concurrent FAISS dump operations to prevent corruption - Add asyncio lock to ensure only one FAISS dump operation runs at a time - Generate unique temporary filenames using UUID tokens for atomic replacement - Implement proper cleanup of temporary files in finally block - Add comprehensive test to verify concurrent dumps are serialized - Ensure atomic writes by replacing both index and idmap files together - Prevent partial state writes during concurrent access scenarios |
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jinliyl
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2a85c36fa9
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refactor(embedding): defer provider construction until first remote call (#361)
- Changed dimensions property to avoid forcing provider construction - Added _ensure_model method to construct provider on demand - Modified __call__ to ensure model exists before use - Updated _start to defer provider initialization - Removed eager health check during startup - Added compact embedding serialization with base64 encoding - Implemented batch processing for vector search with heap-based ranking - Added document_ids property to keyword index interface - Updated chunk persistence to handle legacy JSON embeddings - Optimized memory usage by avoiding materialization of metadata in document_ids |
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jinliyl
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eb471d7d94
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fix(embedding): reject mismatched embedding dimensions (#330)
* fix(embedding): enforce strict dimension matching for embeddings - Add _embedding_dim_matches method to validate embedding dimensions - Reject embeddings with mismatched dimensions instead of padding/truncating - Drop stale embeddings with wrong dimensions during loading and upsert operations - Disable embedding store when query dimensions don't match configured dimensions - Fail health checks when embedding dimensions don't match expected values - Skip chunks with wrong dimensions during FAISS index rebuild - Add comprehensive tests for dimension validation behavior * refactor(file_store): simplify conditional checks in vector search and test assertions - Combine multiple conditionals into single check for empty FAISS index - Replace explicit empty list comparison with boolean check for node embedding calls - Maintain same functional behavior while improving code readability * fix(embedding): harden dimension validation helpers |
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xyf2020
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43a407bc4f
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feat: add start_date/end_date time filter support for search job (#317)
* feat: add start_date/end_date time filter support for search job
- Add _extract_date_from_path to extract validated YYYY-MM-DD from chunk paths
- Add start_date/end_date filtering in _matches_search_filter
- Implement progressive recall in FaissLocalFileStore.vector_search
- Promote start_date/end_date from context to search_filter in SearchStep
- Add start_date/end_date parameters to search job in default.yaml
- Add unit tests for date filter functionality
* fix: validate/normalize date filters and harden _extract_date_from_path
Address three code-review comments on the time_filter search feature:
1. Validate/normalize start_date and end_date before string comparison.
_matches_search_filter does lexicographic comparison against path_date
(always canonical YYYY-MM-DD). Raw caller values like '2026-2-28' or
'abc' would produce silently wrong results. Now SearchStep normalizes
valid dates via extract_daily_date (with strptime fallback for
non-zero-padded input) and silently ignores invalid dates with a
logger.warning, removing them from the filter.
2. Clarify behavior for paths without embedded dates.
Added optional strict_date_filter parameter (default False). When True
and at least one date bound is active, chunks whose path yields no date
(e.g. digest/personal/topic.md) are excluded. When False (default),
the existing behavior is preserved — dateless paths pass through.
3. Harden _extract_date_from_path against non-standard suffixes.
Previously parts[1].split('.')[0] accepted '2026-05-18.anything' as a
valid date. Now only exact 'YYYY-MM-DD' (dir) and 'YYYY-MM-DD.md'
(day-index) forms are accepted.
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jinliyl
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afe12b16db
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feat(file_store): add embedding backfill for persisted chunks (#292)
- Implement _backfill_missing_embeddings method to handle chunks without embeddings - Add logic to identify and process chunks that predate embedding feature - Integrate backfill process into store loading sequence - Add proper error handling and logging for backfill operations - Create unit test for embedding backfill functionality - Ensure backfilled embeddings are properly persisted to storage |
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jinliyl
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a3bd81bde2
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Update version to 0.4.0.2 and improve tokenizer index handling (#290)
* fix(core): update version number to 0.4.0.1 - Incremented version from 0.4.0.0 to 0.4.0.1 in __init__.py * fix(index): remove stopwords path from tokenizer config and add keyword index repair - Remove stopwords_path from tokenizer config to prevent index forking by install path - Add _sync_keyword_index_from_chunks method to repair keyword index when persisted state mismatches - Implement test for keyword index repair from persisted chunks when missing - Add test to verify tokenizer fingerprint ignores stopwords absolute path - Update version from 0.4.0.1 to 0.4.0.2 * feat(dream): add scan_days parameter to dream extraction process - Add scan_days configuration option to default.yaml with default value of 2 - Implement recent_dates utility function to calculate date ranges for scanning - Modify DreamExtractStep to scan multiple days based on scan_days parameter - Update dream extraction to process files across multiple dates instead of single day - Extend DreamState schema to include dates and scan_days fields - Update DreamTopicsStep to handle multi-day topic processing - Modify finish step to checkpoint files from all scanned dates - Add comprehensive tests for multi-day scanning functionality - Update prompt templates to include scan dates information - Refactor topics writing logic to target specific date rather than current date |
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Sen Huang
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e31db5fe19
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docs: rename vault_dir to workspace_dir in documentation and examples (#286)
* docs: rename vault_dir to workspace_dir in documentation and examples * refactor(extract): format long method call across multiple lines * refactor(extract): format system prompt parameters for better readability |
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jinliyl
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206a53e5ed
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init: reme version 0.4.0 (#284) |
Renamed from tests4/unit/test_file_store_consistency.py (Browse further)