* feat: refine local-first research workflows
* fix: delegate structured output tool choice
* refactor(auto-fin): fetch and filter rolling CLS news
* fix(auto-fin): keep imports portable across platforms
* feat(auto-fin): expose CLS fetch controls
* fix(auto-fin): propagate configurable news window
* feat(auto_fin): normalize hybrid wikilinks in report body
- Add _normalize_hybrid_wikilinks method to remove redundant Markdown destinations
- Use regex to identify hybrid wikilinks with optional destinations
- Replace redundant destinations with simpler wikilink format for clarity
- Ensure normalization is failure-safe with exception handling and logging
- Update report body normalization process to apply hybrid wikilink fix
- Add unit tests to verify correct normalization and failure safety behavior
* fix(dream): serialize integration with application-wide asyncio lock
- Add application-wide asyncio.Lock to serialize digest writes during integration
- Update _snapshot_digest to capture metadata per bucket
- Validate bucket association when recovering from file changes
- Add tests ensuring recovery only from the correct bucket
- Add tests confirming integration lock is shared across application context
- Enhance strict topic YAML loading validation in dream utils
- Add tests for strict topic loading rejecting invalid or lossy fields
* fix(cookbook): enable configurable job_tools for digest and merge steps
- Update daily_cookbook.yaml to add job_tools: [memory_search, read] in digest steps
- Modify DailyPaperDigestStep to read job_tools from kwargs instead of fixed list
- Modify AutoFinMergeStep to similarly read job_tools from kwargs
- Update tests to pass job_tools explicitly when invoking these steps
- Remove hardcoded _TOOLS constants and replace with dynamic job_tools handling
* fix: retry incomplete dream receipts
* perf(pdf): increase max PDF pages limit from 20 to 35
- Updated configuration max_pdf_pages from 20 to 35 in daily_cookbook.yaml
- Modified code to extract up to 35 pages instead of 20 in analyze.py
- Updated README and README_ZH to document the increased max_pdf_pages
- Adjusted unit test assertions to reflect new max_pdf_pages limit of 35
* fix memory integration and daily paper links
* docs clarify cookbook tool usage
* feat: simplify local links and support line anchors
* fix: align line anchor tests with CI lint
* fix: preserve local links across file moves
* fix: encode markdown paths when rewriting links
* refactor(read): keep explicit line range parameters
* fix: simplify legacy link predicate compatibility
* docs: align local link behavior with implementation
* fix: skip unsupported markdown destination escapes
* fix: normalize workspace link paths across platforms
* fix: bound markdown link scanning
* fix: keep local link processing linear
* docs: clarify permissive markdown link parsing
* fix: handle local link processing failures
* refactor: limit file links to wikilink syntax
* docs: align wikilink contract with implementation
* fix: normalize dream and neighbor paths on Windows
* fix: resolve workspace path for neighbor expansion
* chore(logging): change info logs to debug level for data loading operations
- Changed stopwords loading log from info to debug level
- Changed file catalog nodes loading log from info to debug level
- Changed file graph nodes loading log from info to debug level
* feat(dream): add dream schema definitions and enum for auto-dream functionality
- Add DreamBucketEnum with procedure, personal, and wiki values
- Create comprehensive dream-related Pydantic models including DreamUnit,
DreamTopic, DreamExtractOutput, IntegrateOutcome, TopicSelectionOutput,
ProactiveResult, and DreamState
- Move schema definitions from local step module to shared schema package
- Update dream extraction and integration steps to use new enum-based
bucket validation
- Initialize digest directories for each dream bucket type
- Enhance embedding store health check with workspace directory logging
* refactor(tests): update DreamState import path in test_auto_dream.py
- Move DreamState import from reme.steps.evolve.dream.schema to reme.schema
- Maintain same functionality with updated module reference
- Align import with new schema location in project structure
* fix(core): update version number to 0.4.0.1
- Incremented version from 0.4.0.0 to 0.4.0.1 in __init__.py
* fix(index): remove stopwords path from tokenizer config and add keyword index repair
- Remove stopwords_path from tokenizer config to prevent index forking by install path
- Add _sync_keyword_index_from_chunks method to repair keyword index when persisted state mismatches
- Implement test for keyword index repair from persisted chunks when missing
- Add test to verify tokenizer fingerprint ignores stopwords absolute path
- Update version from 0.4.0.1 to 0.4.0.2
* feat(dream): add scan_days parameter to dream extraction process
- Add scan_days configuration option to default.yaml with default value of 2
- Implement recent_dates utility function to calculate date ranges for scanning
- Modify DreamExtractStep to scan multiple days based on scan_days parameter
- Update dream extraction to process files across multiple dates instead of single day
- Extend DreamState schema to include dates and scan_days fields
- Update DreamTopicsStep to handle multi-day topic processing
- Modify finish step to checkpoint files from all scanned dates
- Add comprehensive tests for multi-day scanning functionality
- Update prompt templates to include scan dates information
- Refactor topics writing logic to target specific date rather than current date
* docs: rename vault_dir to workspace_dir in documentation and examples
* refactor(extract): format long method call across multiple lines
* refactor(extract): format system prompt parameters for better readability
