* Initial plan
* fix: add time-based deadline to cross-file type propagation to prevent stalling on large repos
Adds a 2-minute wall-clock time limit (DEFAULT_CROSS_FILE_ELAPSED_MS) to
runCrossFileBindingPropagation. When exceeded, the phase gracefully stops
and logs a warning. Users can override via GITNEXUS_CROSS_FILE_TIMEOUT_MS
env var. This prevents the analyze command from stalling for hours on very
large repositories where per-file re-resolution is expensive.
Fixes the reported issue where gitnexus analyze stalls at "Cross-file type
propagation" for several hours on repos with 15000+ files.
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* fix: root cause - cache tree-sitter queries across files, add live progress reporting
Root cause: cross-file propagation called processCalls() with 1 file at a time,
causing Parser.Query to be recompiled from the query string for every single file
(O(N) compilations vs O(1) for the whole phase). Additionally, progress was only
reported once at the start, making the phase appear completely frozen.
Fixes:
- Add optional `compiledQueryCache` parameter to `processCalls` so callers that
invoke it with single-file batches can share compiled query objects across calls.
The cross-file phase now compiles each language's query string exactly once and
reuses it for all files of that language (e.g. 1 TypeScript compile for 595+ files).
- Pre-count candidate files and emit onProgress every 25 files showing
"Cross-file type propagation (N/M files)..." so the UI shows real movement
instead of a frozen bar.
- Keep the wall-clock deadline (GITNEXUS_CROSS_FILE_TIMEOUT_MS) as a safety
net for pathological inputs.
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* fix: address code review - use SupportedLanguages key type, rename queryCache to compiledQueryCache
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* chore(autofix): apply prettier + eslint fixes via /autofix command
* fix(cross-file): remove wall-clock timeout from type propagation
The query compilation cache and live progress reporting address the
original stall; the 2-minute deadline could truncate cross-file work on
large repos. MAX_CROSS_FILE_REPROCESS (2000) remains as the only cap.
* test(cross-file): verify compiledQueryCache is shared across all processCalls invocations
Finding 1: O(N) query recompilation was fixed by sharing a compiledQueryCache Map
across all processCalls invocations in runCrossFileBindingPropagation. This test
verifies the fix is correctly wired: the same Map instance is passed as the
12th argument to every call, proving queries are compiled once per language,
not once per file.
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* test(cross-file): verify live progress events are emitted with N/M format
Finding 2: frozen progress display was fixed by emitting onProgress every 25 files
with "Cross-file type propagation (N/M files)..." messages instead of calling it
once at phase start. This test verifies the fix with 50 candidate files: expects
onProgress called 3 times (1 initial + at 25 + at 50) with correct N/M counters.
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* fix(cross-file): skip registry-primary language files before readFileContents
Finding 3 (from comment 4466231612): cross-file-impl was calling processCalls
for every candidate file even when that file's language is registry-primary
(TypeScript, C++, Python, Go, C#, PHP, C — since AGENTS.md v1.7.0). processCalls
would immediately skip those files via its own isRegistryPrimary guard, but
cross-file-impl still paid the full cost: readFileContents I/O, buildImportedReturnTypes,
buildImportedRawReturnTypes, and Map allocation — all discarded.
Fix: check isRegistryPrimary(lang) in both the totalCandidates pre-count loop
and the levelCandidates builder, before any file I/O or map building. This
eliminates 595+ no-op processCalls invocations on large TypeScript repos.
Test: mocks isRegistryPrimary to always return true and verifies that
processCalls is never invoked and result is 0. The mock also defaults to false
in beforeEach so existing tests using .ts files are unaffected.
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* refactor(test): address code review - simplify mock factory, name the arg index constant
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