GitNexus/gitnexus/src/cli
Gergő Magyar 7bbaf6b73b
fix(review): fail closed on foreign embedding identity and vector-width drift (#3260)
Applied from a ce-code-review pass over this branch (run 20260911-053832-b49f88d6).

- `embeddings sync` now gates EVERY checkpoint kind on embedding identity.
  `unverified-count` was exempted, but `decideEmbeddingResume` abandons that
  kind before it compares identity, so the exemption was the only thing
  keeping a foreign model from filling holes beside the old model's vectors —
  two vector spaces in one CodeEmbedding table, reported healthy. The test
  that asserted this run succeeds now asserts the refusal.

- `embeddings sync` refuses when the index's recorded vector width differs
  from this run's. The column is FLOAT[N] fixed at build time and the pipeline
  deletes each batch's stale rows immediately before inserting, so a width
  change deleted rows it could not re-insert. `analyze` already forces a
  rebuild on the same mismatch; only a rebuild can retype the column.

- `GITNEXUS_EMBEDDING_RETRY_TIMEOUTS` parses with the repo's truthy convention
  (`1`/`true`/`yes`). The integer parser threw on `true`, so the conventional
  spelling hard-failed every embedding call rather than enabling the flag or
  leaving it off. README names the accepted spellings.

- One `persistMeta` write path replaces three inlined metadata
  read-modify-writes; #2790 traced two production drifts to hand-copied
  writers of these exact fields.

- Tests: the pipeline mock now invokes `onCheckpointWindowStart`/`onCheckpoint`,
  so the resume contract actually executes under test. Added coverage for the
  incomplete-index refusal, the partial-checkpoint branch, and the body-read
  timeout retry site that the existing opt-in test never reached.

Verified: tsc --noEmit clean; 99 tests pass across the three affected suites;
prettier clean.

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-09-11 07:37:08 +00:00
..
i18n feat: Make long HTTP embedding jobs resumable (#3065) 2026-09-10 19:48:50 +01:00
ai-context.ts fix: stop analyze from clobbering customized GitNexus skills (#3124) 2026-09-01 09:56:48 +00:00
analyze-config.ts feat(api): honor branch on POST /api/analyze (#3199) 2026-09-08 15:15:45 +01:00
analyze-options.ts fix(analyze): add cold parser rebuild option (#3153) 2026-09-04 05:14:00 +01:00
analyze-watch.ts fix(analyze): add cold parser rebuild option (#3153) 2026-09-04 05:14:00 +01:00
analyze.ts feat: notify users when a newer gitnexus version is available (#3175) 2026-09-04 18:50:03 +01:00
augment.ts feat(cursor): upgrade hooks to Cursor 2.4 postToolUse for Read/Grep/Shell coverage (#1467) 2026-05-10 13:29:06 +01:00
auto-sync.ts feat: add gitnexus auto-sync for scheduled remote clone and analyze (#2493) 2026-09-02 19:40:18 +01:00
clean.ts fix: make large incremental writebacks commit reliably (#2409) (#2425) 2026-07-10 14:05:23 +01:00
cli-message.ts fix(schema): declare the full scope-resolution relation cross product (#2792) (#2793) 2026-08-02 16:26:25 +01:00
command-banner.ts chore: release v1.6.11 (#3177) 2026-09-04 20:02:37 +01:00
detect-changes-format.ts fix(cli): do not call zero-symbol detect-changes a clean tree (#3138) 2026-09-02 18:59:53 +01:00
doctor.ts fix(doctor): distinguish vector capability from repository index state (#3228) 2026-09-09 13:06:41 +01:00
editor-targets.ts fix(setup): preserve existing OpenCode config.jsonc (#2694) 2026-07-26 16:23:34 +01:00
embedding-dims.ts feat(cli): add --embeddings-baseurl/-model/-auth-token/-dims flags to analyze (#2140) 2026-06-13 14:01:12 +01:00
embeddings-sync.ts fix(review): fail closed on foreign embedding identity and vector-width drift (#3260) 2026-09-11 07:37:08 +00:00
embeddings.ts fix: proxy-blocked installs survive onnxruntime-node postinstall and self-heal embeddings (#2370) (#2372) 2026-07-05 16:15:10 +01:00
eval-server.ts fix(zig): model callable-value references, and stop reporting their absence as exact (#3219) 2026-09-09 20:12:17 +00:00
format-elapsed.ts feat(progress): add per-language progress reporting to scope-resolution phase (#1813) 2026-05-25 11:53:54 +01:00
format-symbol.ts fix(mcp): stop scaling the detect_changes query with the diff's hunk count (#2915) (#2930) 2026-08-12 14:51:17 +01:00
generated-skill.ts fix(mcp): stop scaling the detect_changes query with the diff's hunk count (#2915) (#2930) 2026-08-12 14:51:17 +01:00
group-status-format.ts feat(staleness): report diverged and unknown index state instead of fresh (#3257) 2026-09-11 08:07:37 +01:00
group.ts feat(staleness): report diverged and unknown index state instead of fresh (#3257) 2026-09-11 08:07:37 +01:00
help-i18n.ts feat: notify users when a newer gitnexus version is available (#3175) 2026-09-04 18:50:03 +01:00
index-repo.ts fix(storage): rename index metadata to gitnexus.json with dual-write compatibility (#2363) 2026-07-03 19:32:59 +01:00
index.ts feat: Make long HTTP embedding jobs resumable (#3065) 2026-09-10 19:48:50 +01:00
lazy-action.ts feat(skills): GitNexus Engineering Tool Kits (#2566) 2026-07-19 15:07:24 +01:00
list.ts feat: multi-branch indexing and branch-scoped querying (#2106) (#2137) 2026-06-10 10:24:40 +01:00
mcp.ts feat: notify users when a newer gitnexus version is available (#3175) 2026-09-04 18:50:03 +01:00
optional-grammars.ts fix(zig): vendor tree-sitter-zig so npm i -g no longer warns on peers (#3180) 2026-09-05 10:35:33 +01:00
publish.ts feat(cli): add gitnexus publish for opt-in understand-quickly registry (#1425) 2026-05-09 09:52:26 +01:00
remove.ts fix(storage): rename index metadata to gitnexus.json with dual-write compatibility (#2363) 2026-07-03 19:32:59 +01:00
resolve-invocation.ts feat(cli): add a bunx lane so bun-only machines can run gitnexus (#2765) 2026-08-06 08:40:36 +00:00
serve.ts feat(i18n): make web and CLI language-aware (#1748) 2026-05-23 06:14:24 +01:00
setup.ts chore: release v1.6.11 (#3177) 2026-09-04 20:02:37 +01:00
skill-gen.ts fix(mcp): stop scaling the detect_changes query with the diff's hunk count (#2915) (#2930) 2026-08-12 14:51:17 +01:00
standard-skills.ts feat(skills): GitNexus Engineering Tool Kits (#2566) 2026-07-19 15:07:24 +01:00
status.ts fix(status): judge freshness by covered files, not a dirty working tree (#3083) 2026-08-29 12:56:41 +00:00
tool.ts fix(check): stop reporting erased and deferred imports as initialization cycles (#2934) 2026-08-12 17:09:32 +00:00
uninstall.ts feat(skills): GitNexus Engineering Tool Kits (#2566) 2026-07-19 15:07:24 +01:00
update-notice.ts feat: notify users when a newer gitnexus version is available (#3175) 2026-09-04 18:50:03 +01:00
update.ts chore: release v1.6.11 (#3177) 2026-09-04 20:02:37 +01:00
watch-queue.ts feat(analyze): add incremental watch mode (#3072) 2026-08-29 10:40:56 +00:00
watch.ts feat: add gitnexus auto-sync for scheduled remote clone and analyze (#2493) 2026-09-02 19:40:18 +01:00
wiki.ts feat(wiki): add grok local CLI provider (#3069) 2026-08-29 08:46:30 +01:00