GitNexus/gitnexus/package.json
ivkond fbff6d08c0
feat(ingestion): respect .gitignore and .gitnexusignore during file discovery (#231)
* feat(ingestion): respect .gitignore and .gitnexusignore during file discovery

Add support for excluding files from indexing based on .gitignore and
.gitnexusignore patterns. Previously, GitNexus used only a hardcoded
ignore list, causing significant index pollution in repositories with
git-ignored directories containing code (e.g., Docker-mounted volumes).

Changes:
- Add `ignore` package for gitignore-spec pattern matching
- Add `loadIgnoreRules()` to parse .gitignore + .gitnexusignore
- Add `createIgnoreFilter()` returning glob-compatible IgnoreLike object
- Integrate filter into glob's `ignore` option for directory-level pruning
- Remove post-glob `.filter()` call (now handled during traversal)

The hardcoded DEFAULT_IGNORE_LIST remains as fallback for non-git repos.

Closes #228

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(ingestion): address review feedback on ignore filtering

- Distinguish ENOENT vs EACCES in loadIgnoreRules (warn on permission errors)
- Add GITNEXUS_NO_GITIGNORE env var to bypass .gitignore parsing
- Fix bare-name pattern matching in childrenIgnored (check both with/without trailing slash)
- Rename isIgnoredDirectory to isHardcodedIgnoredDirectory for clarity
- Add clarifying comments for design decisions (D2 negation, D3 dot:false redundancy)
- Add tests for bare-name patterns, file-glob patterns, EACCES handling, env var

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(ingestion): address second round of review feedback

- G1: Document GITNEXUS_NO_GITIGNORE in `analyze --help` and log when active
- G2: Add comment clarifying path-scurry POSIX normalization contract
- G3: Add IgnoreOptions interface — env var now falls back, callers can
  pass `noGitignore` explicitly for testability and future CLI flag
- G4: Add integration test verifying walkRepositoryPaths respects the env var

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat(ingestion): gracefully skip files with unavailable tree-sitter grammars

Port unsupported language resilience from PR #301 by @jecanore.
- Make Kotlin import optional (like Swift) in parser-loader and parse-worker
- Add worker-local isLanguageAvailable() with filePath param for tsx distinction
- Track and log skipped files per language in both sequential and worker paths
- Add skippedLanguages to ParseWorkerResult for worker→main aggregation
- Add isLanguageAvailable unit tests

Refs: #301, #155, #228

Co-Authored-By: jecanore <juan@housingbase.io>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* test(e2e): add ignore + language-skip end-to-end test with fixture repo

Add a fixture repo (test/fixtures/ignore-and-skip-repo/) with .gitignore,
.gitnexusignore, TypeScript source files, and a Swift file to exercise
all three features end-to-end:

- File discovery: verifies .gitignore excludes data/ and *.log,
  .gitnexusignore excludes vendor/, source files are discovered
- Parsing: verifies TypeScript files produce Function nodes and DEFINES
  relationships, Swift files are skipped gracefully when grammar is
  unavailable

Add the test to the standalone group in ci-integration.yml and coverage job.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(ci): move ignore-and-skip-e2e test to e2e group per review feedback

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(test): use temp directory instead of fixture for e2e ignore test

The fixture's .gitignore prevented data/seed.json and debug.log from
being committed — these files would be missing after checkout in CI.

Switch to creating the entire test structure in a temp directory via
beforeAll (matching filesystem-walker.test.ts pattern). This ensures
all files exist regardless of git ignore rules.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(test): correct graph API usage in e2e ignore test

Use graph.nodes property getter instead of graph.getNodes(), and check
Function node filePath instead of non-existent File nodes (File nodes
are created by processStructure, not processParsing).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* ci: add workflows permission to ci-integration.yml

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* ci: change workflows permission to write per review

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* ci: move workflows permission from ci-integration.yml to ci.yml caller

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(ci): fix Claude workflows for fork PRs, remove misplaced workflows perm

Three issues prevented Claude from running on fork PRs:

1. claude-code-review.yml lacked workflows:write — push failed when
   fork PRs modify .github/workflows/ files
2. claude.yml had no fork PR support — checked out main and couldn't
   fetch the fork's branch from origin
3. Cleanup step unconditionally deleted branches even when push failed,
   breaking the concurrent claude.yml workflow

Also removes workflows:write from ci.yml's integration job — CI tests
don't need that permission. The permission belongs on the claude
workflows that push fork branches.

Changes:
- Add workflows:write to both claude workflow permissions blocks
- Add fork PR detection + branch push/cleanup to claude.yml
- Add step id to push-fork; cleanup only runs if push succeeded
- Pass branch names via env vars to prevent shell injection (security)
- Add concurrency groups to prevent race conditions between workflows
- Remove misplaced workflows:write from ci.yml integration job

* fix(ci): use GitHub API for fork branch refs instead of git push

GITHUB_TOKEN cannot have 'workflows' permission — it's only valid for
PATs and GitHub Apps. This means git push fails whenever a fork PR
modifies .github/workflows/ files.

Replace git push with the GitHub REST API (POST/PATCH /git/refs) to
create temporary branch refs. The API creates a pointer to the
already-existing PR head commit without triggering the workflow file
push protection. Similarly, cleanup uses DELETE /git/refs instead of
git push --delete.

Also removes the invalid 'workflows: write' from permissions blocks.

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: jecanore <juan@housingbase.io>
Co-authored-by: Gergo Magyar <gergomagyar@icloud.com>
2026-03-16 13:26:20 +00:00

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{
"name": "gitnexus",
"version": "1.4.0",
"description": "Graph-powered code intelligence for AI agents. Index any codebase, query via MCP or CLI.",
"author": "Abhigyan Patwari",
"license": "PolyForm-Noncommercial-1.0.0",
"homepage": "https://github.com/abhigyanpatwari/GitNexus#readme",
"repository": {
"type": "git",
"url": "git+https://github.com/abhigyanpatwari/GitNexus.git",
"directory": "gitnexus"
},
"bugs": {
"url": "https://github.com/abhigyanpatwari/GitNexus/issues"
},
"keywords": [
"mcp",
"model-context-protocol",
"code-intelligence",
"knowledge-graph",
"cursor",
"claude",
"ai-agent",
"gitnexus",
"static-analysis",
"codebase-indexing"
],
"type": "module",
"bin": {
"gitnexus": "dist/cli/index.js"
},
"files": [
"dist",
"hooks",
"scripts",
"skills",
"vendor"
],
"scripts": {
"build": "tsc",
"dev": "tsx watch src/cli/index.ts",
"test": "vitest run test/unit",
"test:integration": "vitest run test/integration",
"test:all": "vitest run",
"test:watch": "vitest",
"test:coverage": "vitest run --coverage",
"prepare": "npm run build",
"postinstall": "node scripts/patch-tree-sitter-swift.cjs"
},
"dependencies": {
"@huggingface/transformers": "^3.0.0",
"@modelcontextprotocol/sdk": "^1.0.0",
"cli-progress": "^3.12.0",
"commander": "^12.0.0",
"cors": "^2.8.5",
"express": "^4.19.2",
"glob": "^11.0.0",
"graphology": "^0.25.4",
"graphology-indices": "^0.17.0",
"graphology-utils": "^2.3.0",
"@ladybugdb/core": "^0.15.1",
"ignore": "^7.0.5",
"lru-cache": "^11.0.0",
"mnemonist": "^0.39.0",
"pandemonium": "^2.4.0",
"tree-sitter": "^0.21.0",
"tree-sitter-c": "^0.21.0",
"tree-sitter-c-sharp": "^0.21.0",
"tree-sitter-cpp": "^0.22.0",
"tree-sitter-go": "^0.21.0",
"tree-sitter-java": "^0.21.0",
"tree-sitter-javascript": "^0.21.0",
"tree-sitter-php": "^0.23.12",
"tree-sitter-python": "^0.21.0",
"tree-sitter-ruby": "^0.23.1",
"tree-sitter-rust": "^0.21.0",
"tree-sitter-typescript": "^0.21.0",
"uuid": "^13.0.0"
},
"optionalDependencies": {
"tree-sitter-kotlin": "^0.3.8",
"tree-sitter-swift": "^0.6.0"
},
"devDependencies": {
"@types/cli-progress": "^3.11.6",
"@types/cors": "^2.8.17",
"@types/express": "^4.17.21",
"@types/node": "^20.0.0",
"@types/uuid": "^10.0.0",
"@vitest/coverage-v8": "^4.0.18",
"tsx": "^4.0.0",
"typescript": "^5.4.5",
"vitest": "^4.0.18"
},
"engines": {
"node": ">=18.0.0"
}
}