GitNexus/gitnexus/src/server/api.ts
Copilot 666041d608
fix(security): log-injection, http-to-file-access, client-side-request-forgery (#1456)
* fix(security): U11 log-injection, http-to-file-access, client-side-request-forgery

U11.1: Add validateLLMBaseUrl() in llm-client.ts; called at the top of
callLLM() to reject non-http/https schemes and http:// to non-loopback
hosts before any fetch that writes LLM output to disk.

U11.2: Strip CRLF from groupDir in bridge-db.ts openBridgeDbReadOnly
before logging (defence-in-depth on top of pino's JSON escaping).

U11.3: Replace console.log with logger.debug and sanitize normalizedName
/ job.id in api.ts resolveRepo to close js/log-injection alerts.

U11.4: Add validateBackendUrl() in backend-client.ts; called inside
setBackendUrl() to reject non-http/https schemes before the URL is
stored as a fetch target, closing js/client-side-request-forgery alerts.

U11.5: Tests added:
- wiki-llm-client.test.ts: validateLLMBaseUrl happy/error paths
- server-connection.test.ts: validateBackendUrl and setBackendUrl
  rejection paths

All new tests pass (30/30 wiki-llm-client, 18/18 server-connection,
30/30 bridge-db).

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/0452a6ce-711f-4203-9ae6-5dd0b77fb157

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* fix: correct IPv6 loopback check in validateLLMBaseUrl

Node's URL parser preserves brackets in hostname for IPv6 addresses
(e.g. http://[::1]:11434 yields hostname '[::1]'), so strip them
before comparing against '::1'. Add a test to cover this case.

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/0452a6ce-711f-4203-9ae6-5dd0b77fb157

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* fix: also sanitize error message in bridge-db log call

Sanitize lastErr.message (which may contain a file path from ENOENT
errors) alongside groupDir to prevent CRLF injection from error
message content. Addressed code review feedback.

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/0452a6ce-711f-4203-9ae6-5dd0b77fb157

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* fix: address security review findings — credential hygiene and test coverage

[LOW] Redact credentials from URL validation error messages:
- validateLLMBaseUrl: malformed URL no longer echoes raw input;
  scheme error shows protocol only; http-non-loopback error uses
  parsed.origin (scheme+host+port) instead of full URL
- validateBackendUrl: same treatment — no raw input in any error path

[INFO] Add state-preservation test for setBackendUrl:
- Proves _backendUrl is unchanged after a rejected call, covering the
  validation-before-assignment ordering.

[INFO] Expand validateLLMBaseUrl adversarial test coverage:
- LOCALHOST uppercase (case-fold path)
- RFC 1918 / IMDS IPs (10.x, 169.254.x)
- Hostname-spoofing (localhost.evil.com, 127.0.0.1.evil.com, localhost.)
- Non-loopback IPv6 (fe80::1, ::ffff:127.0.0.1)
- ftp:// scheme
- Credential-hygiene assertion (sk-secret not in error message)

Agent-Logs-Url: https://github.com/abhigyanpatwari/GitNexus/sessions/7bb18fa2-3e66-4fe0-949f-6d493fbd351b

Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>

* style: prettier autoformat U11 security fix files

Fixes the failing 'quality / format' check on PR #1456 by running 'prettier --write' over the 6 files touched by the security fix. Formatting only — no logic change.

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: magyargergo <11230420+magyargergo@users.noreply.github.com>
Co-authored-by: Gergo Magyar <gergomagyar@icloud.com>
2026-05-09 17:26:32 +01:00

1864 lines
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TypeScript
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/**
* HTTP API Server
*
* REST API for browser-based clients to query the local .gitnexus/ index.
* Also hosts the MCP server over StreamableHTTP for remote AI tool access.
*
* Security: binds to localhost by default (use --host to override).
* CORS is restricted to localhost, private/LAN networks, and the deployed site.
*/
import express from 'express';
import cors from 'cors';
import path from 'path';
import fs from 'fs/promises';
import { createRequire } from 'node:module';
import { loadMeta, listRegisteredRepos, getStoragePath } from '../storage/repo-manager.js';
import {
executeQuery,
executePrepared,
executeWithReusedStatement,
streamQuery,
flushWAL,
closeLbug,
withLbugDb,
} from '../core/lbug/lbug-adapter.js';
import { isWriteQuery } from '../core/lbug/pool-adapter.js';
import { NODE_TABLES, type GraphNode, type GraphRelationship } from 'gitnexus-shared';
import { searchFTSFromLbug } from '../core/search/bm25-index.js';
import { hybridSearch } from '../core/search/hybrid-search.js';
import { LocalBackend } from '../mcp/local/local-backend.js';
import { mountMCPEndpoints } from './mcp-http.js';
import { fork } from 'child_process';
import { fileURLToPath, pathToFileURL } from 'url';
import { JobManager } from './analyze-job.js';
import { assertString, escapeRegExp, BadRequestError, createRouteLimiter } from './validation.js';
import { extractRepoName, getCloneDir, cloneOrPull } from './git-clone.js';
import { logger, flushLoggerSync } from '../core/logger.js';
const _require = createRequire(import.meta.url);
const pkg = _require('../../package.json');
/**
* Determine whether an HTTP Origin header value is allowed by CORS policy.
*
* Permitted origins:
* - No origin (non-browser requests such as curl or server-to-server calls)
* - http://localhost:<port> — local development
* - http://127.0.0.1:<port> — loopback alias
* - RFC 1918 private/LAN networks (any port):
* 10.0.0.0/8 → 10.x.x.x
* 172.16.0.0/12 → 172.16.x.x 172.31.x.x
* 192.168.0.0/16 → 192.168.x.x
* - https://gitnexus.vercel.app — the deployed GitNexus web UI
*
* @param origin - The value of the HTTP `Origin` request header, or `undefined`
* when the header is absent (non-browser request).
* @returns `true` if the origin is allowed, `false` otherwise.
*/
export const isAllowedOrigin = (origin: string | undefined): boolean => {
if (origin === undefined) {
// Non-browser requests (curl, server-to-server) have no Origin header
return true;
}
if (
origin.startsWith('http://localhost:') ||
origin === 'http://localhost' ||
origin.startsWith('http://127.0.0.1:') ||
origin === 'http://127.0.0.1' ||
origin.startsWith('http://[::1]:') ||
origin === 'http://[::1]' ||
origin === 'https://gitnexus.vercel.app'
) {
return true;
}
// RFC 1918 private network ranges — allow any port on these hosts.
// We parse the hostname out of the origin URL and check against each range.
let hostname: string;
let protocol: string;
try {
const parsed = new URL(origin);
hostname = parsed.hostname;
protocol = parsed.protocol;
} catch {
// Malformed origin — reject
return false;
}
// Only allow HTTP(S) origins — reject ftp://, file://, etc.
if (protocol !== 'http:' && protocol !== 'https:') return false;
const octets = hostname.split('.').map(Number);
if (octets.length !== 4 || octets.some((o) => !Number.isInteger(o) || o < 0 || o > 255)) {
return false;
}
const [a, b] = octets;
// 10.0.0.0/8
if (a === 10) return true;
// 172.16.0.0/12 → 172.16.x.x 172.31.x.x
if (a === 172 && b >= 16 && b <= 31) return true;
// 192.168.0.0/16
if (a === 192 && b === 168) return true;
return false;
};
type GraphStreamRecord =
| { type: 'node'; data: GraphNode }
| { type: 'relationship'; data: GraphRelationship }
| { type: 'error'; error: string };
export class ClientDisconnectedError extends Error {
constructor() {
super('Client disconnected during graph stream');
this.name = 'ClientDisconnectedError';
}
}
export const isIgnorableGraphQueryError = (err: unknown): boolean => {
const message = err instanceof Error ? err.message : String(err);
return (
message.includes('does not exist') ||
message.includes('not found') ||
message.includes('No table named')
);
};
export const SPA_FALLBACK_REGEX = /^(?!\/api(?:\/|$))(?!.*\.\w{1,10}$).*/;
export const resolveWebDistDir = async (
primaryDir: string,
fallbackDir: string,
): Promise<string | null> => {
const envDir = process.env.GITNEXUS_WEB_DIST;
const dirs = envDir ? [envDir, primaryDir, fallbackDir] : [primaryDir, fallbackDir];
for (const dir of dirs) {
try {
await fs.access(path.join(dir, 'index.html'));
return dir;
} catch (err: any) {
if (err?.code !== 'ENOENT') {
logger.warn({ err: err.message }, `[serve] could not access web UI dir ${dir}:`);
}
}
}
return null;
};
export const landingPageHtml = (): string => `<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<title>GitNexus</title>
<style>
*{margin:0;padding:0;box-sizing:border-box}
body{font-family:Outfit,system-ui,-apple-system,sans-serif;background:#06060a;color:#e4e4ed;min-height:100vh;display:flex;align-items:center;justify-content:center;padding:1.5rem}
.card{background:#101018;border:1px solid #2a2a3a;border-radius:0.75rem;padding:2rem;max-width:480px;width:100%}
.logo{font-size:1.5rem;font-weight:700;color:#e4e4ed;letter-spacing:-0.02em;margin-bottom:0.25rem}
.subtitle{font-size:0.875rem;color:#8888a0;margin-bottom:1.5rem}
.section-title{font-size:0.75rem;font-weight:600;text-transform:uppercase;letter-spacing:0.05em;color:#5a5a70;margin-bottom:0.75rem}
.endpoint{margin:0.25rem 0;font-size:0.875rem}
.endpoint a{color:#7c3aed;text-decoration:none}
.endpoint a:hover{text-decoration:underline}
.endpoint code{background:#16161f;padding:0.15em 0.4em;border-radius:0.25rem;font-size:0.8rem;color:#8888a0}
.divider{height:1px;background:#1e1e2a;margin:1.25rem 0}
.terminal{background:#0a0a10;border:1px solid #1e1e2a;border-radius:0.5rem;padding:0.75rem 1rem;font-family:'SF Mono',SFMono-Regular,Consolas,'Liberation Mono',Menlo,monospace;font-size:0.8rem;color:#8888a0;margin-bottom:1rem;overflow-x:auto}
.terminal .prompt{color:#7c3aed;user-select:none}
.terminal .cmd{color:#e4e4ed}
.link-row{display:flex;align-items:center;gap:0.5rem;font-size:0.875rem;margin-top:0.5rem}
.link-row svg{flex-shrink:0}
a.ext{color:#7c3aed;text-decoration:none;display:inline-flex;align-items:center;gap:0.25rem}
a.ext:hover{text-decoration:underline}
</style>
</head>
<body>
<div class="card">
<div class="logo">GitNexus</div>
<div class="subtitle">API server is running</div>
<div class="section-title">Endpoints</div>
<p class="endpoint"><a href="/api/info">/api/info</a> <span style="color:#5a5a70">— Server version &amp; context</span></p>
<p class="endpoint"><a href="/api/repos">/api/repos</a> <span style="color:#5a5a70">— Indexed repositories</span></p>
<p class="endpoint"><code>/api/health</code> <span style="color:#5a5a70">— Docker/orchestrator healthcheck</span></p>
<p class="endpoint"><code>/api/heartbeat</code> <span style="color:#5a5a70">— SSE heartbeat</span></p>
<p class="endpoint"><code>/api/graph</code> <code>/api/query</code> <code>/api/search</code> <span style="color:#5a5a70">— Data</span></p>
<p class="endpoint"><code>/api/mcp</code> <span style="color:#5a5a70">— MCP over StreamableHTTP</span></p>
<div class="divider"></div>
<div class="section-title">Web UI not found</div>
<div class="terminal"><span class="prompt">$ </span><span class="cmd">cd gitnexus-web &amp;&amp; npm run build</span></div>
<div class="link-row">
<svg width="14" height="14" viewBox="0 0 24 24" fill="none" stroke="#7c3aed" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><path d="M18 13v6a2 2 0 0 1-2 2H5a2 2 0 0 1-2-2V8a2 2 0 0 1 2-2h6"/><polyline points="15 3 21 3 21 9"/><line x1="10" y1="14" x2="21" y2="3"/></svg>
<a class="ext" href="https://gitnexus.vercel.app" target="_blank" rel="noopener noreferrer">gitnexus.vercel.app</a>
<span style="color:#5a5a70">— connects to this server</span>
</div>
</div>
</body>
</html>`;
export const staticCacheControlSetHeaders = (res: express.Response, filePath: string): void => {
if (filePath.endsWith('.html')) {
res.setHeader('Cache-Control', 'no-cache');
} else {
res.setHeader('Cache-Control', 'public, max-age=31536000, immutable');
}
};
export const registerWebUI = (app: express.Express, staticDir: string | null): void => {
if (staticDir) {
app.use(
express.static(staticDir, {
setHeaders: staticCacheControlSetHeaders,
}),
);
// ⚠ This must remain the LAST route before the global error handler.
// The regex excludes /api paths AND paths with file extensions (.js, .css, etc.)
// so missing assets get real 404s instead of the SPA HTML.
// Adding routes below this will be unreachable for non-API, non-asset paths.
// Rate-limited (CodeQL js/missing-rate-limiting): the SPA fallback
// serves a constant index.html, but the FS access from a route handler
// is enough to trip the analyzer. The limit is generous (300 rpm/IP =
// 5 req/s sustained) so that multi-tab browser navigation, prefetch,
// and service-worker revalidation do not produce 429s for legitimate
// SPA users. At this rate, real browser navigation is extremely
// unlikely to hit the limit in practice, so the cosmetic issue of
// JSON-on-429 to a browser is a low-likelihood path. Content
// negotiation on the 429 (returning the SPA shell to HTML clients
// instead of `{ error: '...' }`) would require swapping
// express-rate-limit's `message` for a `handler` function and is
// deferred to keep this PR focused on closing the CodeQL alert.
app.get(SPA_FALLBACK_REGEX, createRouteLimiter({ limit: 300 }), (_req, res) => {
res.sendFile(path.join(staticDir, 'index.html'));
});
} else {
app.get('/', (_req, res) => {
res.type('html').send(landingPageHtml());
});
}
};
const ensureStreamIsWritable = (res: express.Response, signal?: AbortSignal): void => {
if (signal?.aborted || res.destroyed || res.writableEnded) {
throw new ClientDisconnectedError();
}
};
const waitForDrain = async (res: express.Response, signal?: AbortSignal): Promise<void> => {
ensureStreamIsWritable(res, signal);
await new Promise<void>((resolve, reject) => {
const cleanup = () => {
res.off('drain', onDrain);
res.off('close', onClose);
signal?.removeEventListener('abort', onAbort);
};
const onDrain = () => {
cleanup();
resolve();
};
const onClose = () => {
cleanup();
reject(new ClientDisconnectedError());
};
const onAbort = () => {
cleanup();
reject(new ClientDisconnectedError());
};
res.once('drain', onDrain);
res.once('close', onClose);
signal?.addEventListener('abort', onAbort, { once: true });
if (signal?.aborted || res.destroyed || res.writableEnded) {
onAbort();
}
});
ensureStreamIsWritable(res, signal);
};
const isClientDisconnectWriteError = (err: unknown): boolean => {
if (!(err instanceof Error)) return false;
return (
(err as NodeJS.ErrnoException).code === 'ERR_STREAM_DESTROYED' ||
(err as NodeJS.ErrnoException).code === 'EPIPE' ||
(err as NodeJS.ErrnoException).code === 'ECONNRESET' ||
err.message.includes('write after end')
);
};
export const writeNdjsonRecord = async (
res: express.Response,
record: GraphStreamRecord,
signal?: AbortSignal,
): Promise<void> => {
ensureStreamIsWritable(res, signal);
try {
const canContinue = res.write(JSON.stringify(record) + '\n');
if (!canContinue) {
await waitForDrain(res, signal);
}
} catch (err) {
if (isClientDisconnectWriteError(err)) {
throw new ClientDisconnectedError();
}
throw err;
}
};
const buildGraph = async (
includeContent = false,
): Promise<{ nodes: GraphNode[]; relationships: GraphRelationship[] }> => {
const nodes: GraphNode[] = [];
for (const table of NODE_TABLES) {
try {
const rows = await executeQuery(getNodeQuery(table, includeContent));
for (const row of rows) {
nodes.push(mapGraphNodeRow(table, row, includeContent));
}
} catch (err) {
if (!isIgnorableGraphQueryError(err)) {
throw err;
}
}
}
const relationships: GraphRelationship[] = [];
const relRows = await executeQuery(GRAPH_RELATIONSHIP_QUERY);
for (const row of relRows) {
relationships.push(mapGraphRelationshipRow(row));
}
return { nodes, relationships };
};
const GRAPH_RELATIONSHIP_QUERY =
`MATCH (a)-[r:CodeRelation]->(b) RETURN a.id AS sourceId, b.id AS targetId, ` +
`r.type AS type, r.confidence AS confidence, r.reason AS reason, r.step AS step`;
const quoteNodeTable = (table: string): string => `\`${table.replace(/`/g, '``')}\``;
const getNodeQuery = (table: string, includeContent: boolean): string => {
const tableLabel = quoteNodeTable(table);
if (table === 'File') {
return includeContent
? `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath, n.content AS content`
: `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath`;
}
if (table === 'Folder') {
return `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath`;
}
if (table === 'Community') {
return `MATCH (n:${tableLabel}) RETURN n.id AS id, n.label AS label, n.heuristicLabel AS heuristicLabel, n.cohesion AS cohesion, n.symbolCount AS symbolCount`;
}
if (table === 'Process') {
return `MATCH (n:${tableLabel}) RETURN n.id AS id, n.label AS label, n.heuristicLabel AS heuristicLabel, n.processType AS processType, n.stepCount AS stepCount, n.communities AS communities, n.entryPointId AS entryPointId, n.terminalId AS terminalId`;
}
if (table === 'Route') {
return `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath, n.responseKeys AS responseKeys, n.errorKeys AS errorKeys, n.middleware AS middleware`;
}
if (table === 'Tool') {
return `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath, n.description AS description`;
}
return includeContent
? `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath, n.startLine AS startLine, n.endLine AS endLine, n.content AS content`
: `MATCH (n:${tableLabel}) RETURN n.id AS id, n.name AS name, n.filePath AS filePath, n.startLine AS startLine, n.endLine AS endLine`;
};
const mapGraphNodeRow = (table: string, row: any, includeContent: boolean): GraphNode => ({
id: row.id ?? row[0],
label: table as GraphNode['label'],
properties: {
name: row.name ?? row.label ?? row[1],
filePath: row.filePath ?? row[2],
startLine: row.startLine,
endLine: row.endLine,
content: includeContent ? row.content : undefined,
responseKeys: row.responseKeys,
errorKeys: row.errorKeys,
middleware: row.middleware,
heuristicLabel: row.heuristicLabel,
cohesion: row.cohesion,
symbolCount: row.symbolCount,
description: row.description,
processType: row.processType,
stepCount: row.stepCount,
communities: row.communities,
entryPointId: row.entryPointId,
terminalId: row.terminalId,
} as GraphNode['properties'],
});
const mapGraphRelationshipRow = (row: any): GraphRelationship => ({
id: `${row.sourceId}_${row.type}_${row.targetId}`,
type: row.type,
sourceId: row.sourceId,
targetId: row.targetId,
confidence: row.confidence,
reason: row.reason,
step: row.step,
});
export const streamGraphNdjson = async (
res: express.Response,
includeContent = false,
signal?: AbortSignal,
): Promise<void> => {
for (const table of NODE_TABLES) {
try {
await streamQuery(getNodeQuery(table, includeContent), async (row) => {
await writeNdjsonRecord(
res,
{
type: 'node',
data: mapGraphNodeRow(table, row, includeContent),
},
signal,
);
});
} catch (err) {
if (!isIgnorableGraphQueryError(err)) {
throw err;
}
}
}
await streamQuery(GRAPH_RELATIONSHIP_QUERY, async (row) => {
await writeNdjsonRecord(
res,
{
type: 'relationship',
data: mapGraphRelationshipRow(row),
},
signal,
);
});
};
/**
* Mount an SSE progress endpoint for a JobManager.
* Handles: initial state, terminal events, heartbeat, event IDs, client disconnect.
*/
const mountSSEProgress = (app: express.Express, routePath: string, jm: JobManager) => {
app.get(routePath, (req, res) => {
const job = jm.getJob(req.params.jobId);
if (!job) {
res.status(404).json({ error: 'Job not found' });
return;
}
let eventId = 0;
res.writeHead(200, {
'Content-Type': 'text/event-stream',
'Cache-Control': 'no-cache',
Connection: 'keep-alive',
'X-Accel-Buffering': 'no',
});
// Send current state immediately
eventId++;
res.write(`id: ${eventId}\ndata: ${JSON.stringify(job.progress)}\n\n`);
// If already terminal, send event and close
if (job.status === 'complete' || job.status === 'failed') {
eventId++;
res.write(
`id: ${eventId}\nevent: ${job.status}\ndata: ${JSON.stringify({
repoName: job.repoName,
error: job.error,
})}\n\n`,
);
res.end();
return;
}
// Heartbeat to detect zombie connections
const heartbeat = setInterval(() => {
try {
res.write(':heartbeat\n\n');
} catch {
clearInterval(heartbeat);
unsubscribe();
}
}, 30_000);
// Subscribe to progress updates
const unsubscribe = jm.onProgress(job.id, (progress) => {
try {
eventId++;
if (progress.phase === 'complete' || progress.phase === 'failed') {
const eventJob = jm.getJob(req.params.jobId);
res.write(
`id: ${eventId}\nevent: ${progress.phase}\ndata: ${JSON.stringify({
repoName: eventJob?.repoName,
error: eventJob?.error,
})}\n\n`,
);
clearInterval(heartbeat);
res.end();
unsubscribe();
} else {
res.write(`id: ${eventId}\ndata: ${JSON.stringify(progress)}\n\n`);
}
} catch {
clearInterval(heartbeat);
unsubscribe();
}
});
req.on('close', () => {
clearInterval(heartbeat);
unsubscribe();
});
});
};
const statusFromError = (err: any): number => {
// Validation helpers throw BadRequestError / ForbiddenError with a typed
// .status field — honor it before falling back to message-string matching.
if (err instanceof BadRequestError) return err.status;
const msg = String(err?.message ?? '');
if (msg.includes('No indexed repositories') || msg.includes('not found')) return 404;
if (msg.includes('Multiple repositories')) return 400;
return 500;
};
const requestedRepo = (req: express.Request): string | undefined => {
const fromQuery = typeof req.query.repo === 'string' ? req.query.repo : undefined;
if (fromQuery) return fromQuery;
if (req.body && typeof req.body === 'object' && typeof req.body.repo === 'string') {
return req.body.repo;
}
return undefined;
};
/**
* Handle a GET /api/file request body. Extracted from createServer's route
* registration so it can be unit-tested without spinning up an HTTP server
* — calling app.get(...) inside a test triggers CodeQL's
* js/missing-rate-limiting query, which is appropriate for production
* route handlers but a false positive for tests of the handler logic.
*
* The function takes the express req and res (typed loosely so test code
* can pass minimal mocks) plus the resolved repo path. All path-traversal
* containment is done inline at the readFile sink with the canonical
* path.relative idiom for CodeQL js/path-injection recognition.
*/
export const handleFileRequest = async (
req: { query: any },
res: {
status: (code: number) => { json: (body: any) => void };
json: (body: any) => void;
},
repoPath: string,
): Promise<void> => {
try {
// Type-confusion guard — req.query.path is `string | string[] | ParsedQs`.
// Without this, an attacker could pass `?path=a&path=b` to bypass the
// length-bound traversal check below (CodeQL js/type-confusion-through-
// parameter-tampering, same class as the /api/grep critical fix).
const rawFilePath = req.query.path;
if (rawFilePath === undefined || rawFilePath === '') {
res.status(400).json({ error: 'Missing path' });
return;
}
const filePath = assertString(rawFilePath, 'path');
// Path-injection containment — inline at the sink with the canonical
// path.relative idiom that CodeQL's js/path-injection sanitizer
// recognizes. assertSafePath in validation.ts performs the equivalent
// check, but cross-module helpers are not followed by CodeQL's
// interprocedural analysis for path-traversal sanitization in JS, so
// the barrier must be visible inline at the readFile sink.
const repoRoot = path.resolve(repoPath);
const fullPath = path.resolve(repoRoot, filePath);
const fullRel = path.relative(repoRoot, fullPath);
if (fullRel.startsWith('..') || path.isAbsolute(fullRel)) {
res.status(403).json({ error: 'Path traversal denied' });
return;
}
const raw = await fs.readFile(fullPath, 'utf-8');
// Optional line-range support: ?startLine=10&endLine=50
// Returns only the requested slice (0-indexed), plus metadata.
const startLine = req.query.startLine !== undefined ? Number(req.query.startLine) : undefined;
const endLine = req.query.endLine !== undefined ? Number(req.query.endLine) : undefined;
if (startLine !== undefined && Number.isFinite(startLine)) {
const lines = raw.split('\n');
const start = Math.max(0, startLine);
const end =
endLine !== undefined && Number.isFinite(endLine)
? Math.min(lines.length, endLine + 1)
: lines.length;
res.json({
content: lines.slice(start, end).join('\n'),
startLine: start,
endLine: end - 1,
totalLines: lines.length,
});
} else {
res.json({ content: raw, totalLines: raw.split('\n').length });
}
} catch (err: any) {
if (err.code === 'ENOENT') {
res.status(404).json({ error: 'File not found' });
} else {
// statusFromError returns err.status for BadRequestError / ForbiddenError
// (assertString → 400 on array-form ?path=a&path=b; ForbiddenError → 403
// on traversal). Falls back to 500 for unrecognized failures.
res.status(statusFromError(err)).json({ error: err.message || 'Failed to read file' });
}
}
};
export const createServer = async (port: number, host: string = '127.0.0.1') => {
const app = express();
app.disable('x-powered-by');
// Trust X-Forwarded-* headers only when the connection comes from the
// local loopback or RFC1918 private/link-local addresses — exactly the
// origins the CORS allowlist accepts. Without this, every request behind
// any reverse proxy / Docker bridge counts as the same `req.ip` and a
// single user can trip the per-IP rate limiter for everyone.
//
// SCOPE: this setting is process-wide. Every middleware and route in this
// Express app sees req.ip resolved from X-Forwarded-For when the upstream
// hop is in the trusted set above — not just the rate-limited routes.
// Future IP-based middleware (audit logging, IP-bound authz) inherits this
// behavior.
//
// CLOUD-DEPLOY CAVEAT: a public cloud LB (AWS ALB, Cloudflare, Fly.io
// edge, CGNAT 100.64/10) is NOT in the trusted set. In those topologies
// req.ip will collapse to the LB hop IP for every request and the per-IP
// rate limiter degrades to per-server. Add an explicit env-var override
// and document the cloud-deploy story before binding to a non-loopback
// host in those topologies (tracked as a follow-up; not blocking for the
// local-bound default).
app.set('trust proxy', 'loopback, linklocal, uniquelocal');
// CORS: allow localhost, private/LAN networks, and the deployed site.
// Non-browser requests (curl, server-to-server) have no origin and are allowed.
// Disallowed origins get the response without Access-Control-Allow-Origin,
// so the browser blocks it. We pass `false` instead of throwing an Error to
// avoid crashing into Express's default error handler (which returned 500).
app.use(
cors({
origin: (origin, callback) => {
callback(null, isAllowedOrigin(origin));
},
}),
);
app.use(express.json({ limit: '10mb' }));
// Support Chromium Private Network Access (required since Chrome 130+).
// Without this header, Chrome/Edge/Brave/Arc block public->loopback requests
// which breaks bridge mode entirely.
app.use((_req, res, next) => {
res.setHeader('Access-Control-Allow-Private-Network', 'true');
next();
});
// Handle PNA preflight: Chromium sends Access-Control-Request-Private-Network
// on OPTIONS requests and expects the allow header in the response.
// Note: the actual Allow-Private-Network header is already set by the global
// middleware above, so we just need to call next() here.
app.options('*', (_req, res, next) => {
next();
});
// Initialize MCP backend (multi-repo, shared across all MCP sessions)
const backend = new LocalBackend();
await backend.init();
const cleanupMcp = mountMCPEndpoints(app, backend);
const jobManager = new JobManager();
// Shared repo lock — prevents concurrent analyze + embed on the same repo path,
// which would corrupt LadybugDB (analyze calls closeLbug + initLbug while embed has queries in flight).
const activeRepoPaths = new Set<string>();
const acquireRepoLock = (repoPath: string): string | null => {
if (activeRepoPaths.has(repoPath)) {
return `Another job is already active for this repository`;
}
activeRepoPaths.add(repoPath);
return null;
};
const releaseRepoLock = (repoPath: string): void => {
activeRepoPaths.delete(repoPath);
};
/**
* Maximum time the hold-queue will wait for an active analysis job to complete.
* Must stay in sync with the frontend's `fetchRepoInfo({ awaitAnalysis: true })` timeout.
*/
const HOLD_QUEUE_TIMEOUT_SECS = 300; // 5 minutes
// Helper: resolve a repo by name from the global registry, or default to first.
// Pass `req` to enable early exit if the client disconnects during the hold-queue wait.
const resolveRepo = async (repoName?: string, isRetry = false, req?: any): Promise<any> => {
const repos = await listRegisteredRepos();
let found = null;
// Normalize: if a full path is passed, extract just the basename.
// e.g. "C:\Users\LENOVO\.gitnexus\repos\todo.txt-cli" -> "todo.txt-cli"
const normalizedName = repoName ? path.basename(repoName) : undefined;
if (normalizedName) {
found =
repos.find((r) => r.name === normalizedName) ||
repos.find((r) => r.name.toLowerCase() === normalizedName.toLowerCase()) ||
null;
} else if (repos.length > 0) {
found = repos[0]; // default to first repo
}
// If not yet in the registry, check whether a background job is actively cloning or
// analyzing this repo. Hold the connection open (up to 5 minutes) until it completes.
// We only wait for in-progress jobs ('queued'|'cloning'|'analyzing') — a 'complete' job
// whose repo is still missing means the registry sync failed; the fallback below handles it.
if (!found && normalizedName) {
const lower = normalizedName.toLowerCase();
// Track client disconnect to cancel the wait early
let clientGone = false;
req?.on('close', () => {
clientGone = true;
});
for (const job of jobManager.listJobs()) {
const isMatch =
job.repoName?.toLowerCase() === lower ||
(job.repoUrl && path.basename(job.repoUrl).replace('.git', '').toLowerCase() === lower) ||
(job.repoPath && path.basename(job.repoPath).toLowerCase() === lower);
if (isMatch && ['queued', 'cloning', 'analyzing'].includes(job.status)) {
if (process.env.DEBUG) {
// Sanitize user-controlled values to prevent log injection (CodeQL js/log-injection).
logger.debug(
{
jobId: String(job.id).replace(/[\r\n]/g, ' '),
repoName: String(normalizedName).replace(/[\r\n]/g, ' '),
},
'[debug] resolveRepo waiting for active job',
);
}
for (let wait = 0; wait < HOLD_QUEUE_TIMEOUT_SECS; wait++) {
if (clientGone) return null; // client disconnected — stop polling
const currentJob = jobManager.getJob(job.id);
if (!currentJob || currentJob.status === 'failed') break;
if (currentJob.status === 'complete') {
await backend.init();
const freshRepos = await listRegisteredRepos();
return freshRepos.find((r) => r.name === normalizedName) || null;
}
await new Promise((r) => setTimeout(r, 1000));
}
// Timed out — signal to the caller with a specific message
return { __timedOut: true, repoName: normalizedName };
}
}
}
// Emergency fallback: re-sync the registry to handle Windows file-system race conditions
// (e.g. registry file not yet flushed after clone completes).
if (!found && normalizedName && !isRetry) {
if (process.env.DEBUG) {
// Sanitize user-controlled values to prevent log injection (CodeQL js/log-injection).
logger.debug(
{ repoName: String(normalizedName).replace(/[\r\n]/g, ' ') },
'[debug] resolveRepo 404, triggering deep init',
);
}
await backend.init();
return await resolveRepo(normalizedName, true, req);
}
return found;
};
// Lightweight healthcheck for Docker/orchestrator probes (#1147).
// Returns immediately so container managers do not confuse a long-lived
// SSE stream with an unhealthy server.
app.get('/api/health', (_req, res) => {
res.json({ status: 'ok' });
});
// SSE heartbeat — clients connect to detect server liveness instantly.
// When the server shuts down, the TCP connection drops and the client's
// EventSource fires onerror immediately (no polling delay).
app.get('/api/heartbeat', (_req, res) => {
// Use res.set() instead of res.writeHead() to preserve CORS headers from middleware
res.set({
'Content-Type': 'text/event-stream',
'Cache-Control': 'no-cache',
Connection: 'keep-alive',
});
res.flushHeaders();
// Send initial ping so the client knows it connected
res.write(':ok\n\n');
// Keep-alive ping every 15s to prevent proxy/firewall timeout
const interval = setInterval(() => res.write(':ping\n\n'), 15_000);
_req.on('close', () => clearInterval(interval));
});
// Server info: version and launch context (npx / global / local dev)
app.get('/api/info', (_req, res) => {
const execPath = process.env.npm_execpath ?? '';
const argv0 = process.argv[1] ?? '';
let launchContext: 'npx' | 'global' | 'local';
if (
execPath.includes('npx') ||
argv0.includes('_npx') ||
process.env.npm_config_prefix?.includes('_npx')
) {
launchContext = 'npx';
} else if (argv0.includes('node_modules')) {
launchContext = 'local';
} else {
launchContext = 'global';
}
res.json({ version: pkg.version, launchContext, nodeVersion: process.version });
});
// List all registered repos
app.get('/api/repos', async (_req, res) => {
try {
const repos = await listRegisteredRepos();
res.json(
repos.map((r) => ({
name: r.name,
path: r.path,
indexedAt: r.indexedAt,
lastCommit: r.lastCommit,
stats: r.stats,
})),
);
} catch (err: any) {
res.status(500).json({ error: err.message || 'Failed to list repos' });
}
});
// Get repo info
app.get('/api/repo', async (req, res) => {
try {
const entry = await resolveRepo(requestedRepo(req), false, req);
if (!entry) {
res.status(404).json({ error: 'Repository not found. Run: gitnexus analyze' });
return;
}
// Timed out waiting for an active analysis job
if (entry.__timedOut) {
res.status(503).json({
error: `Repository analysis for "${entry.repoName}" is taking longer than expected. Please try again in a moment.`,
});
return;
}
const meta = await loadMeta(entry.storagePath);
res.json({
name: entry.name,
repoPath: entry.path,
indexedAt: meta?.indexedAt ?? entry.indexedAt,
stats: meta?.stats ?? entry.stats ?? {},
});
} catch (err: any) {
res.status(500).json({ error: err.message || 'Failed to get repo info' });
}
});
// Delete a repo — removes index, clone dir (if any), and unregisters it
// Rate-limited (CodeQL js/missing-rate-limiting): destructive operation
// doing fs.rm of clone + storage dirs. Default 60 rpm/IP is generous for
// delete; tighten if abuse is observed.
app.delete('/api/repo', createRouteLimiter(), async (req, res) => {
try {
const repoName = requestedRepo(req);
if (!repoName) {
res.status(400).json({ error: 'Missing repo name' });
return;
}
const entry = await resolveRepo(repoName);
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
// Acquire repo lock — prevents deleting while analyze/embed is in flight
const lockKey = getStoragePath(entry.path);
const lockErr = acquireRepoLock(lockKey);
if (lockErr) {
res.status(409).json({ error: lockErr });
return;
}
try {
// Close any open LadybugDB handle before deleting files
try {
await closeLbug();
} catch {}
// 1. Delete the .gitnexus index/storage directory
const storagePath = getStoragePath(entry.path);
await fs.rm(storagePath, { recursive: true, force: true }).catch(() => {});
// 2. Delete the cloned repo dir if it lives under ~/.gitnexus/repos/.
// getCloneDir now throws on names that are not filesystem-safe (e.g.
// local repos registered with names like "my project" or "org/repo").
// Such repos legitimately have no clone dir, so treat the rejection as
// "nothing to clean up" rather than letting it fail the delete handler.
let cloneDir: string | null = null;
try {
cloneDir = getCloneDir(entry.name);
} catch {
/* repo name not eligible for a clone dir (local repo) */
}
if (cloneDir) {
try {
const stat = await fs.stat(cloneDir);
if (stat.isDirectory()) {
await fs.rm(cloneDir, { recursive: true, force: true });
}
} catch {
/* clone dir may not exist */
}
}
// 3. Unregister from the global registry
const { unregisterRepo } = await import('../storage/repo-manager.js');
await unregisterRepo(entry.path);
// 4. Reinitialize backend to reflect the removal
await backend.init().catch(() => {});
res.json({ deleted: entry.name });
} finally {
releaseRepoLock(lockKey);
}
} catch (err: any) {
res.status(500).json({ error: err.message || 'Failed to delete repo' });
}
});
// Get full graph
app.get('/api/graph', async (req, res) => {
try {
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
const lbugPath = path.join(entry.storagePath, 'lbug');
const includeContent = req.query.includeContent === 'true';
const stream = req.query.stream === 'true';
if (stream) {
const abortController = new AbortController();
let responseFinished = false;
const markFinished = () => {
responseFinished = true;
};
const abortStreaming = () => {
if (!responseFinished) {
abortController.abort();
}
};
res.setHeader('Content-Type', 'application/x-ndjson; charset=utf-8');
res.setHeader('Cache-Control', 'no-cache');
res.flushHeaders();
req.once('aborted', abortStreaming);
res.once('finish', markFinished);
res.once('close', abortStreaming);
try {
await withLbugDb(lbugPath, async () =>
streamGraphNdjson(res, includeContent, abortController.signal),
);
if (!abortController.signal.aborted && !res.writableEnded) {
res.end();
}
} finally {
req.off('aborted', abortStreaming);
res.off('finish', markFinished);
res.off('close', abortStreaming);
}
return;
}
const graph = await withLbugDb(lbugPath, async () => buildGraph(includeContent));
res.json(graph);
} catch (err: any) {
if (err instanceof ClientDisconnectedError) {
return;
}
const message = err.message || 'Failed to build graph';
if (res.headersSent) {
try {
res.write(JSON.stringify({ type: 'error', error: message }) + '\n');
} catch {
// Best-effort only after streaming has started.
}
res.end();
return;
}
res.status(500).json({ error: message });
}
});
// Execute Cypher query
app.post('/api/query', async (req, res) => {
try {
const cypher = req.body.cypher as string;
if (!cypher) {
res.status(400).json({ error: 'Missing "cypher" in request body' });
return;
}
if (isWriteQuery(cypher)) {
res.status(403).json({ error: 'Write queries are not allowed via the HTTP API' });
return;
}
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
const lbugPath = path.join(entry.storagePath, 'lbug');
const result = await withLbugDb(lbugPath, () => executeQuery(cypher));
res.json({ result });
} catch (err: any) {
res.status(500).json({ error: err.message || 'Query failed' });
}
});
// Search (supports mode: 'hybrid' | 'semantic' | 'bm25', and optional enrichment)
app.post('/api/search', async (req, res) => {
try {
const query = (req.body.query ?? '').trim();
if (!query) {
res.status(400).json({ error: 'Missing "query" in request body' });
return;
}
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
const lbugPath = path.join(entry.storagePath, 'lbug');
const parsedLimit = Number(req.body.limit ?? 10);
const limit = Number.isFinite(parsedLimit)
? Math.max(1, Math.min(100, Math.trunc(parsedLimit)))
: 10;
const mode: string = req.body.mode ?? 'hybrid';
const enrich: boolean = req.body.enrich !== false; // default true
const results = await withLbugDb(lbugPath, async () => {
let searchResults: any[];
let ftsAvailable: boolean | undefined;
if (mode === 'semantic') {
const { isEmbedderReady } = await import('../core/embeddings/embedder.js');
if (!isEmbedderReady()) {
return { searchResults: [] as any[], ftsAvailable: undefined };
}
const { semanticSearch: semSearch } =
await import('../core/embeddings/embedding-pipeline.js');
searchResults = await semSearch(executeQuery, query, limit);
// Normalize semantic results to HybridSearchResult shape
searchResults = searchResults.map((r: any, i: number) => ({
...r,
score: r.score ?? 1 - (r.distance ?? 0),
rank: i + 1,
sources: ['semantic'],
}));
} else if (mode === 'bm25') {
const ftsResponse = await searchFTSFromLbug(query, limit);
ftsAvailable = ftsResponse.ftsAvailable;
searchResults = ftsResponse.results.map((r: any, i: number) => ({
...r,
rank: i + 1,
sources: ['bm25'],
}));
} else {
// hybrid (default)
const { isEmbedderReady } = await import('../core/embeddings/embedder.js');
if (isEmbedderReady()) {
const { semanticSearch: semSearch } =
await import('../core/embeddings/embedding-pipeline.js');
searchResults = await hybridSearch(query, limit, executeQuery, semSearch);
} else {
const ftsResponse = await searchFTSFromLbug(query, limit);
ftsAvailable = ftsResponse.ftsAvailable;
searchResults = ftsResponse.results;
}
}
if (!enrich) return { searchResults, ftsAvailable };
// Server-side enrichment: add connections, cluster, processes per result
// Uses parameterized queries to prevent Cypher injection via nodeId
const validLabel = (label: string): boolean =>
(NODE_TABLES as readonly string[]).includes(label);
const enriched = await Promise.all(
searchResults.slice(0, limit).map(async (r: any) => {
const nodeId: string = r.nodeId || r.id || '';
const nodeLabel = nodeId.split(':')[0];
const enrichment: { connections?: any; cluster?: string; processes?: any[] } = {};
if (!nodeId || !validLabel(nodeLabel)) return { ...r, ...enrichment };
// Run connections, cluster, and process queries in parallel
// Label is validated against NODE_TABLES (compile-time safe identifiers);
// nodeId uses $nid parameter binding to prevent injection
const [connRes, clusterRes, procRes] = await Promise.all([
executePrepared(
`
MATCH (n:${nodeLabel} {id: $nid})
OPTIONAL MATCH (n)-[r1:CodeRelation]->(dst)
OPTIONAL MATCH (src)-[r2:CodeRelation]->(n)
RETURN
collect(DISTINCT {name: dst.name, type: r1.type, confidence: r1.confidence}) AS outgoing,
collect(DISTINCT {name: src.name, type: r2.type, confidence: r2.confidence}) AS incoming
LIMIT 1
`,
{ nid: nodeId },
).catch(() => []),
executePrepared(
`
MATCH (n:${nodeLabel} {id: $nid})
MATCH (n)-[:CodeRelation {type: 'MEMBER_OF'}]->(c:Community)
RETURN c.label AS label, c.description AS description
LIMIT 1
`,
{ nid: nodeId },
).catch(() => []),
executePrepared(
`
MATCH (n:${nodeLabel} {id: $nid})
MATCH (n)-[rel:CodeRelation {type: 'STEP_IN_PROCESS'}]->(p:Process)
RETURN p.id AS id, p.label AS label, rel.step AS step, p.stepCount AS stepCount
ORDER BY rel.step
`,
{ nid: nodeId },
).catch(() => []),
]);
if (connRes.length > 0) {
const row = connRes[0];
const outgoing = (Array.isArray(row) ? row[0] : row.outgoing || [])
.filter((c: any) => c?.name)
.slice(0, 5);
const incoming = (Array.isArray(row) ? row[1] : row.incoming || [])
.filter((c: any) => c?.name)
.slice(0, 5);
enrichment.connections = { outgoing, incoming };
}
if (clusterRes.length > 0) {
const row = clusterRes[0];
enrichment.cluster = Array.isArray(row) ? row[0] : row.label;
}
if (procRes.length > 0) {
enrichment.processes = procRes
.map((row: any) => ({
id: Array.isArray(row) ? row[0] : row.id,
label: Array.isArray(row) ? row[1] : row.label,
step: Array.isArray(row) ? row[2] : row.step,
stepCount: Array.isArray(row) ? row[3] : row.stepCount,
}))
.filter((p: any) => p.id && p.label);
}
return { ...r, ...enrichment };
}),
);
return { searchResults: enriched, ftsAvailable };
});
const response: any = { results: results.searchResults ?? results };
if (results.ftsAvailable === false) {
response.warning =
'FTS indexes missing — keyword search degraded. Run: gitnexus analyze --force to rebuild indexes.';
}
res.json(response);
} catch (err: any) {
res.status(500).json({ error: err.message || 'Search failed' });
}
});
// Read file — with path traversal guard
// Rate-limited (CodeQL js/missing-rate-limiting): per-request fs.readFile.
app.get('/api/file', createRouteLimiter(), async (req, res) => {
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
await handleFileRequest(req, res, entry.path);
});
// Grep — regex search across file contents in the indexed repo
// Uses filesystem-based search for memory efficiency (never loads all files into memory)
// Rate-limited (CodeQL js/missing-rate-limiting): scans every file in
// the indexed repo per request — heaviest I/O endpoint. Same default 60
// rpm/IP for now; consider tightening if real-world load shows abuse.
app.get('/api/grep', createRouteLimiter(), async (req, res) => {
try {
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
// Type-confusion guard (CodeQL js/type-confusion-through-parameter-tampering):
// req.query.pattern is `string | string[] | ParsedQs` — without an explicit
// type check, the `.length` guard below counts array elements instead of
// characters, allowing arbitrarily long patterns through.
const rawPattern = req.query.pattern;
if (rawPattern === undefined) {
res.status(400).json({ error: 'Missing "pattern" query parameter' });
return;
}
const pattern = assertString(rawPattern, 'pattern');
if (pattern.length === 0) {
res.status(400).json({ error: 'Missing "pattern" query parameter' });
return;
}
// Length cap: applies to both literal and regex modes as a defense-in-depth
// bound against pathological input.
if (pattern.length > 200) {
res.status(400).json({ error: 'Pattern too long (max 200 characters)' });
return;
}
// Treat user input as a literal substring in all cases to prevent
// regex-injection/ReDoS via attacker-controlled regex syntax.
const effectivePattern = escapeRegExp(pattern);
// Validate regex syntax (catches both opt-in user regex and any escapeRegExp bug)
let regex: RegExp;
try {
regex = new RegExp(effectivePattern, 'gim');
} catch {
res.status(400).json({ error: 'Invalid regex pattern' });
return;
}
const parsedLimit = Number(req.query.limit ?? 50);
const limit = Number.isFinite(parsedLimit)
? Math.max(1, Math.min(200, Math.trunc(parsedLimit)))
: 50;
const results: { filePath: string; line: number; text: string }[] = [];
const repoRoot = path.resolve(entry.path);
// Get file paths from the graph (lightweight — no content loaded)
const lbugPath = path.join(entry.storagePath, 'lbug');
const fileRows = await withLbugDb(lbugPath, () =>
executeQuery(`MATCH (n:File) WHERE n.content IS NOT NULL RETURN n.filePath AS filePath`),
);
// Search files on disk one at a time (constant memory)
for (const row of fileRows) {
if (results.length >= limit) break;
const filePath: string = row.filePath || '';
const fullPath = path.resolve(repoRoot, filePath);
// Path traversal guard
if (!fullPath.startsWith(repoRoot + path.sep) && fullPath !== repoRoot) continue;
let content: string;
try {
content = await fs.readFile(fullPath, 'utf-8');
} catch {
continue; // File may have been deleted since indexing
}
const lines = content.split('\n');
for (let i = 0; i < lines.length; i++) {
if (results.length >= limit) break;
if (regex.test(lines[i])) {
results.push({ filePath, line: i + 1, text: lines[i].trim().slice(0, 200) });
}
regex.lastIndex = 0;
}
}
res.json({ results });
} catch (err: any) {
res.status(statusFromError(err)).json({ error: err.message || 'Grep failed' });
}
});
// List all processes
app.get('/api/processes', async (req, res) => {
try {
const result = await backend.queryProcesses(requestedRepo(req));
res.json(result);
} catch (err: any) {
res.status(statusFromError(err)).json({ error: err.message || 'Failed to query processes' });
}
});
// Process detail
app.get('/api/process', async (req, res) => {
try {
const name = String(req.query.name ?? '').trim();
if (!name) {
res.status(400).json({ error: 'Missing "name" query parameter' });
return;
}
const result = await backend.queryProcessDetail(name, requestedRepo(req));
if (result?.error) {
res.status(404).json({ error: result.error });
return;
}
res.json(result);
} catch (err: any) {
res
.status(statusFromError(err))
.json({ error: err.message || 'Failed to query process detail' });
}
});
// List all clusters
app.get('/api/clusters', async (req, res) => {
try {
const result = await backend.queryClusters(requestedRepo(req));
res.json(result);
} catch (err: any) {
res.status(statusFromError(err)).json({ error: err.message || 'Failed to query clusters' });
}
});
// Cluster detail
app.get('/api/cluster', async (req, res) => {
try {
const name = String(req.query.name ?? '').trim();
if (!name) {
res.status(400).json({ error: 'Missing "name" query parameter' });
return;
}
const result = await backend.queryClusterDetail(name, requestedRepo(req));
if (result?.error) {
res.status(404).json({ error: result.error });
return;
}
res.json(result);
} catch (err: any) {
res
.status(statusFromError(err))
.json({ error: err.message || 'Failed to query cluster detail' });
}
});
// ── Analyze API ──────────────────────────────────────────────────────
// POST /api/analyze — start a new analysis job
app.post('/api/analyze', createRouteLimiter({ limit: 10 }), async (req, res) => {
try {
const { url: repoUrl, path: repoLocalPath, force, embeddings, dropEmbeddings } = req.body;
// Input type validation
if (repoUrl !== undefined && typeof repoUrl !== 'string') {
res.status(400).json({ error: '"url" must be a string' });
return;
}
if (repoLocalPath !== undefined && typeof repoLocalPath !== 'string') {
res.status(400).json({ error: '"path" must be a string' });
return;
}
if (!repoUrl && !repoLocalPath) {
res.status(400).json({ error: 'Provide "url" (git URL) or "path" (local path)' });
return;
}
// Path validation: require absolute path, reject traversal (e.g. /tmp/../etc/passwd)
if (repoLocalPath) {
if (!path.isAbsolute(repoLocalPath)) {
res.status(400).json({ error: '"path" must be an absolute path' });
return;
}
if (path.normalize(repoLocalPath) !== path.resolve(repoLocalPath)) {
res.status(400).json({ error: '"path" must not contain traversal sequences' });
return;
}
}
const job = jobManager.createJob({ repoUrl, repoPath: repoLocalPath });
// If job was already running (dedup), just return its id
if (job.status !== 'queued') {
res.status(202).json({ jobId: job.id, status: job.status });
return;
}
// Mark as active synchronously to prevent race with concurrent requests
jobManager.updateJob(job.id, { status: 'cloning' });
// Start async work — don't await
(async () => {
let targetPath = repoLocalPath;
try {
// Clone if URL provided
if (repoUrl && !repoLocalPath) {
const repoName = extractRepoName(repoUrl);
targetPath = getCloneDir(repoName);
jobManager.updateJob(job.id, {
status: 'cloning',
repoName,
progress: { phase: 'cloning', percent: 0, message: `Cloning ${repoUrl}...` },
});
await cloneOrPull(repoUrl, targetPath, (progress) => {
jobManager.updateJob(job.id, {
progress: { phase: progress.phase, percent: 5, message: progress.message },
});
});
}
if (!targetPath) {
throw new Error('No target path resolved');
}
// Acquire shared repo lock (keyed on storagePath to match embed handler)
const analyzeLockKey = getStoragePath(targetPath);
const lockErr = acquireRepoLock(analyzeLockKey);
if (lockErr) {
jobManager.updateJob(job.id, { status: 'failed', error: lockErr });
return;
}
jobManager.updateJob(job.id, { repoPath: targetPath, status: 'analyzing' });
// ── Worker fork with auto-retry ──────────────────────────────
//
// Forks a child process with 8GB heap. If the worker crashes
// (OOM, native addon segfault, etc.), it retries up to
// MAX_WORKER_RETRIES times with exponential backoff before
// marking the job as permanently failed.
//
// In dev mode (tsx), registers the tsx ESM hook via a file://
// URL so the child can compile TypeScript on-the-fly.
const MAX_WORKER_RETRIES = 2;
const callerPath = fileURLToPath(import.meta.url);
const isDev = callerPath.endsWith('.ts');
const workerFile = isDev ? 'analyze-worker.ts' : 'analyze-worker.js';
const workerPath = path.join(path.dirname(callerPath), workerFile);
const tsxHookArgs: string[] = isDev
? ['--import', pathToFileURL(_require.resolve('tsx/esm')).href]
: [];
const forkWorker = () => {
const currentJob = jobManager.getJob(job.id);
if (!currentJob || currentJob.status === 'complete' || currentJob.status === 'failed')
return;
const child = fork(workerPath, [], {
execArgv: [...tsxHookArgs, '--max-old-space-size=8192'],
stdio: ['ignore', 'pipe', 'pipe', 'ipc'],
});
// Capture stderr for crash diagnostics
let stderrChunks = '';
child.stderr?.on('data', (chunk: Buffer) => {
stderrChunks += chunk.toString();
if (stderrChunks.length > 4096) stderrChunks = stderrChunks.slice(-4096);
});
child.on('message', (msg: any) => {
if (msg.type === 'progress') {
jobManager.updateJob(job.id, {
status: 'analyzing',
progress: { phase: msg.phase, percent: msg.percent, message: msg.message },
});
} else if (msg.type === 'complete') {
releaseRepoLock(analyzeLockKey);
// Reinitialize backend BEFORE marking complete — ensures the new
// repo is queryable when the client receives the SSE complete event.
backend
.init()
.then(() => {
jobManager.updateJob(job.id, {
status: 'complete',
repoName: msg.result.repoName,
});
})
.catch((err) => {
logger.error({ err }, 'backend.init() failed after analyze:');
jobManager.updateJob(job.id, {
status: 'failed',
error: 'Server failed to reload after analysis. Try again.',
});
});
} else if (msg.type === 'error') {
releaseRepoLock(analyzeLockKey);
jobManager.updateJob(job.id, {
status: 'failed',
error: msg.message,
});
}
});
child.on('error', (err) => {
releaseRepoLock(analyzeLockKey);
jobManager.updateJob(job.id, {
status: 'failed',
error: `Worker process error: ${err.message}`,
});
});
child.on('exit', (code) => {
const j = jobManager.getJob(job.id);
if (!j || j.status === 'complete' || j.status === 'failed') return;
// Worker crashed — attempt retry if under the limit
if (j.retryCount < MAX_WORKER_RETRIES) {
j.retryCount++;
const delay = 1000 * Math.pow(2, j.retryCount - 1); // 1s, 2s
const lastErr = stderrChunks.trim().split('\n').pop() || '';
logger.warn(
`Analyze worker crashed (code ${code}), retry ${j.retryCount}/${MAX_WORKER_RETRIES} in ${delay}ms` +
(lastErr ? `: ${lastErr}` : ''),
);
jobManager.updateJob(job.id, {
status: 'analyzing',
progress: {
phase: 'retrying',
percent: j.progress.percent,
message: `Worker crashed, retrying (${j.retryCount}/${MAX_WORKER_RETRIES})...`,
},
});
stderrChunks = '';
setTimeout(forkWorker, delay);
} else {
// Exhausted retries — permanent failure
releaseRepoLock(analyzeLockKey);
jobManager.updateJob(job.id, {
status: 'failed',
error: `Worker crashed ${MAX_WORKER_RETRIES + 1} times (code ${code})${stderrChunks ? ': ' + stderrChunks.trim().split('\n').pop() : ''}`,
});
}
});
// Register child for cancellation + timeout tracking
jobManager.registerChild(job.id, child);
// Send start command to child
child.send({
type: 'start',
repoPath: targetPath,
options: {
force: !!force,
embeddings: !!embeddings,
dropEmbeddings: !!dropEmbeddings,
},
});
};
forkWorker();
} catch (err: any) {
if (targetPath) releaseRepoLock(getStoragePath(targetPath));
jobManager.updateJob(job.id, {
status: 'failed',
error: err.message || 'Analysis failed',
});
}
})();
res.status(202).json({ jobId: job.id, status: job.status });
} catch (err: any) {
if (err.message?.includes('already in progress')) {
res.status(409).json({ error: err.message });
} else {
res.status(500).json({ error: err.message || 'Failed to start analysis' });
}
}
});
// GET /api/analyze/:jobId — poll job status
app.get('/api/analyze/:jobId', (req, res) => {
const job = jobManager.getJob(req.params.jobId);
if (!job) {
res.status(404).json({ error: 'Job not found' });
return;
}
res.json({
id: job.id,
status: job.status,
repoUrl: job.repoUrl,
repoPath: job.repoPath,
repoName: job.repoName,
progress: job.progress,
error: job.error,
startedAt: job.startedAt,
completedAt: job.completedAt,
});
});
// GET /api/analyze/:jobId/progress — SSE stream (shared helper)
mountSSEProgress(app, '/api/analyze/:jobId/progress', jobManager);
// DELETE /api/analyze/:jobId — cancel a running analysis job
app.delete('/api/analyze/:jobId', (req, res) => {
const job = jobManager.getJob(req.params.jobId);
if (!job) {
res.status(404).json({ error: 'Job not found' });
return;
}
if (job.status === 'complete' || job.status === 'failed') {
res.status(400).json({ error: `Job already ${job.status}` });
return;
}
jobManager.cancelJob(req.params.jobId, 'Cancelled by user');
res.json({ id: job.id, status: 'failed', error: 'Cancelled by user' });
});
// ── Embedding endpoints ────────────────────────────────────────────
const embedJobManager = new JobManager();
// POST /api/embed — trigger server-side embedding generation
app.post('/api/embed', createRouteLimiter({ limit: 20 }), async (req, res) => {
try {
const entry = await resolveRepo(requestedRepo(req));
if (!entry) {
res.status(404).json({ error: 'Repository not found' });
return;
}
// Check shared repo lock — prevent concurrent analyze + embed on same repo
const repoLockPath = entry.storagePath;
const lockErr = acquireRepoLock(repoLockPath);
if (lockErr) {
res.status(409).json({ error: lockErr });
return;
}
const job = embedJobManager.createJob({ repoPath: entry.storagePath });
embedJobManager.updateJob(job.id, {
repoName: entry.name,
status: 'analyzing' as any,
progress: { phase: 'analyzing', percent: 0, message: 'Starting embedding generation...' },
});
// 30-minute timeout for embedding jobs (same as analyze jobs)
const EMBED_TIMEOUT_MS = 30 * 60 * 1000;
const embedTimeout = setTimeout(() => {
const current = embedJobManager.getJob(job.id);
if (current && current.status !== 'complete' && current.status !== 'failed') {
releaseRepoLock(repoLockPath);
embedJobManager.updateJob(job.id, {
status: 'failed',
error: 'Embedding timed out (30 minute limit)',
});
}
}, EMBED_TIMEOUT_MS);
// Run embedding pipeline asynchronously
(async () => {
try {
const lbugPath = path.join(entry.storagePath, 'lbug');
await withLbugDb(lbugPath, async () => {
const { runEmbeddingPipeline } =
await import('../core/embeddings/embedding-pipeline.js');
// Fetch existing content hashes for incremental embedding.
// Delegated to lbug-adapter which owns the DB query logic and legacy-fallback handling.
const { fetchExistingEmbeddingHashes } = await import('../core/lbug/lbug-adapter.js');
const existingEmbeddings = await fetchExistingEmbeddingHashes(executeQuery);
if (existingEmbeddings && existingEmbeddings.size > 0) {
console.log(
`[embed] ${existingEmbeddings.size} nodes already embedded — incremental run with content-hash comparison`,
);
}
await runEmbeddingPipeline(
executeQuery,
executeWithReusedStatement,
(p) => {
embedJobManager.updateJob(job.id, {
progress: {
phase:
p.phase === 'ready' ? 'complete' : p.phase === 'error' ? 'failed' : p.phase,
percent: p.percent,
message:
p.phase === 'loading-model'
? 'Loading embedding model...'
: p.phase === 'embedding'
? `Embedding nodes (${p.percent}%)...`
: p.phase === 'indexing'
? 'Creating vector index...'
: p.phase === 'ready'
? 'Embeddings complete'
: `${p.phase} (${p.percent}%)`,
},
});
},
{}, // config: use defaults
undefined, // skipNodeIds
undefined, // context
existingEmbeddings,
);
// Flush WAL so subsequent /api/search requests see the new
// embeddings immediately (#1149). In the CLI path closeLbug()
// handles this during process exit, but the server keeps the
// connection open for other routes — a CHECKPOINT is enough.
await flushWAL();
});
clearTimeout(embedTimeout);
releaseRepoLock(repoLockPath);
// Don't overwrite 'failed' if the job was cancelled while the pipeline was running
const current = embedJobManager.getJob(job.id);
if (!current || current.status !== 'failed') {
embedJobManager.updateJob(job.id, { status: 'complete' });
}
} catch (err: any) {
clearTimeout(embedTimeout);
releaseRepoLock(repoLockPath);
const current = embedJobManager.getJob(job.id);
if (!current || current.status !== 'failed') {
embedJobManager.updateJob(job.id, {
status: 'failed',
error: err.message || 'Embedding generation failed',
});
}
}
})();
res.status(202).json({ jobId: job.id, status: 'analyzing' });
} catch (err: any) {
if (err.message?.includes('already in progress')) {
res.status(409).json({ error: err.message });
} else {
res.status(500).json({ error: err.message || 'Failed to start embedding generation' });
}
}
});
// GET /api/embed/:jobId — poll embedding job status
app.get('/api/embed/:jobId', (req, res) => {
const job = embedJobManager.getJob(req.params.jobId);
if (!job) {
res.status(404).json({ error: 'Job not found' });
return;
}
res.json({
id: job.id,
status: job.status,
repoName: job.repoName,
progress: job.progress,
error: job.error,
startedAt: job.startedAt,
completedAt: job.completedAt,
});
});
// GET /api/embed/:jobId/progress — SSE stream (shared helper)
mountSSEProgress(app, '/api/embed/:jobId/progress', embedJobManager);
// DELETE /api/embed/:jobId — cancel embedding job
app.delete('/api/embed/:jobId', (req, res) => {
const job = embedJobManager.getJob(req.params.jobId);
if (!job) {
res.status(404).json({ error: 'Job not found' });
return;
}
if (job.status === 'complete' || job.status === 'failed') {
res.status(400).json({ error: `Job already ${job.status}` });
return;
}
embedJobManager.cancelJob(req.params.jobId, 'Cancelled by user');
res.json({ id: job.id, status: 'failed', error: 'Cancelled by user' });
});
// ── Web UI (served at root) ───────────────────────────────────────
// Resolve the gitnexus-web dist directory relative to this file's location.
// In the published package: <pkg>/dist/server/api.js → <pkg>/web/
// In dev (tsx): gitnexus/src/server/api.ts → gitnexus-web/dist/
const __dirname = path.dirname(fileURLToPath(import.meta.url));
const webDistDir = path.resolve(__dirname, '..', '..', 'web');
const devWebDistDir = path.resolve(__dirname, '..', '..', '..', 'gitnexus-web', 'dist');
const staticDir = await resolveWebDistDir(webDistDir, devWebDistDir);
registerWebUI(app, staticDir);
// Global error handler — catch anything the route handlers miss
app.use((err: any, _req: express.Request, res: express.Response, _next: express.NextFunction) => {
logger.error({ err }, 'Unhandled error:');
res.status(500).json({ error: 'Internal server error' });
});
// Wrap listen in a promise so errors (EADDRINUSE, EACCES, etc.) propagate
// to the caller instead of crashing with an unhandled 'error' event.
await new Promise<void>((resolve, reject) => {
const server = app.listen(port, host, () => {
const displayHost = host === '::' || host === '0.0.0.0' ? 'localhost' : host;
console.log(`GitNexus server running on http://${displayHost}:${port}`);
resolve();
});
server.on('error', (err) => reject(err));
// Graceful shutdown — close Express + LadybugDB cleanly. Pino's default
// destination is `sync: false` (buffered); `flushLoggerSync()` before
// `process.exit` so records emitted during cleanup reach stderr.
const shutdown = async () => {
console.log('\nShutting down...');
server.close();
jobManager.dispose();
embedJobManager.dispose();
await cleanupMcp();
await closeLbug();
await backend.disconnect();
const { flushLoggerSync } = await import('../core/logger.js');
flushLoggerSync();
process.exit(0);
};
process.once('SIGINT', shutdown);
process.once('SIGTERM', shutdown);
// Catch-all crash guards (mirrors startMCPServer in mcp/server.ts).
// Pino v10's default destination is buffered (`sync: false`) — call
// `flushLoggerSync()` after logging and before triggering shutdown
// so the crash record reaches stderr regardless of how cleanup goes.
// Worker-thread transports (pino-pretty under TTY) handle their own
// flush on process exit in v10. `pino.final` was removed in v10
// because the new transport architecture made it unnecessary.
let shuttingDown = false;
process.on('uncaughtException', (err) => {
logger.error({ err }, 'GitNexus uncaughtException');
flushLoggerSync();
if (!shuttingDown) {
shuttingDown = true;
shutdown().catch(() => {});
}
});
process.on('unhandledRejection', (reason: unknown) => {
// Availability-first: log the rejection without exiting.
const err = reason instanceof Error ? reason : new Error(String(reason));
logger.error({ err }, 'GitNexus unhandledRejection');
});
});
};