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22d3c2ad74
AGENTS.md and CLAUDE.md are the agent guides teams commit, and the injected
block carried live symbol/relationship/flow counts. Those counts move with any
code change, so every reindex rewrote a tracked file and produced a spurious
diff that had to be restored by hand before committing real work.
The write is now skipped when the volatile counts are the only delta. Counts are
substituted with placeholders — not deleted — before the comparison, so
--no-stats REMOVING the parenthetical is still a material change that writes
through; only a numbers-only difference is suppressed. Both the verbose path and
the gitnexus:keep path go through the same rule, and a project rename, a template
change, or a base_ref change still rewrites as before. Live counts remain
available from `gitnexus status` and `gitnexus://repo/{name}/context`.
Two smaller churn sources go with it:
- The file was CREATED without a trailing newline while every update path writes
`.trim() + '\n'`, so the analyze right after committing a freshly created
AGENTS.md dirtied it purely to append that newline.
- `--no-stats` left the per-cluster `(N symbols)` counts in the skills table,
which are exactly as volatile as the header parenthetical the flag removes.
The stale-index hook recommended plain `gitnexus analyze` — the variant that
rewrites those tracked docs — so an agent following the nudge verbatim reindexed
with the most invasive flags. `formatAnalyzeCommand` takes `indexOnly` and the
three hook call sites (Claude, plugin copy, Antigravity) pass it; the injected
"Index stale?" line and the MCP context resource's `re_index` hint name the same
`--index-only` form. Full `analyze` stays the documented way to refresh the docs
and skills.
Both resolve-analyze-cmd.cjs copies stay byte-identical.
Claude-Session: https://claude.ai/code/session_019d85r7TrMYjWbTUT3pXccS
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
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