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1449 commits

Author SHA1 Message Date
azizur100389
c8786bb6ef fix(ci): rebalance Windows platform shards 2026-09-21 19:37:37 +01:00
azizur100389
c629383bd5 Merge remote-tracking branch 'upstream/main' into codex/xaml-support-3202
# Conflicts:
#	gitnexus/src/core/search/fts-schema.ts
2026-09-21 19:05:54 +01:00
Adam B.
7376347058
feat(ingestion): add tRPC procedure detection and MCP chain/route surfacing (#3339)
* feat(ingestion): tRPC pattern detection — procedures, curried calls, route extraction

Three changes to properly index tRPC router files:

1. HOC-in-pair patterns: detect procedures like
   'create: procedure.mutation(async ({ input }) => {...})'
   as named Function nodes (pair > call_expression > arguments > arrow_function)

2. Curried call detection: capture 'workflow(db)(input)' chained calls
   where call_expression.function is itself a call_expression

3. tRPC route extraction: new route-extractors/trpc.ts detects
   .query()/.mutation()/.subscription() procedures, maps to /trpc/* routes
   with prefix inference from router variable names

4. Function/Const dedup: structural check skips Const nodes when
   variable_declarator value is arrow_function/function_expression

5. Process-route linking: match by (filePath, methodName) instead of
   filePath only, preventing shared flows across procedures in same router

(cherry picked from commit eced15e60a39a181a48bff8c5bbe278d26aa53b8)

* fix(route-extractors): line-by-line scanner for chained tRPC procedures

Original regex only matched direct patterns (list: proc.query()) but not
chained patterns (create: proc.input(z.object({...})).mutation()). Only
41/256 routes were detected on Jurialis.

Rewrote extractTrpcRoutes() as a line-by-line scanner that:
- Detects procedure keys starting with *Procedure builders
- Tracks currentProcedure forward until terminal .query()/.mutation()
- Handles .input() chaining naturally
- Deduplicates via seen Set on procedurePath

Result: 245 routes from 30 routers (was 41), 256 total after re-index.
(cherry picked from commit 49edf953e93e6b67b77932e866fcbfb8d089b1f3)

* feat(mcp): expose tRPC chains via context/query tools

Eight fixes to make the tRPC route->procedure->workflow->sub-workflow chain
visible through the standard MCP tools (context, query) that AI agents use,
instead of requiring raw Cypher queries.

- A context: order incoming/outgoing CALLS test-last, raise LIMIT 30->100
- B query: batched ENTRY_POINT_OF lookup, surface route URL on processes
- C query: mark process_symbols entry point with is_entry_point=true
- D entry-point-scoring: skip UTILITY_PATTERNS (get*/set*) penalty for
  symbols in tRPC router files so framework boost (3.0x) is preserved
- E fts-schema: index Route nodes so /trpc/* URLs are keyword-searchable
- F tools: bump max_symbols default 10->25 to fit procedure->workflow chain
- G context: optional chain_depth (0-3) param walks CALLS edges in both
  directions and returns layered chain field
- H LadybugDB bug workaround: WHERE r.type IN [...] silently drops edges
  on relationship properties; replace with OR chains (7 occurrences in
  local-backend.ts, pdg-impact.ts, graph-queries.ts)

Validated on Jurialis: setProviderCap procedure now appears as caller of
setProviderCapWorkflow, /trpc/cabinet.setProviderCap Route is searchable,
chain_depth=3 returns the layered call graph.

(cherry picked from commit c24df0adce91e80f191a5c5d2e8b14e9da677366)

* feat(mcp): surface is_entry_point + routes in context, raise query limit

context() is the mandatory pre-edit tool (AGENTS.md). Until now an agent
had to issue a separate query() call just to learn whether its symbol is
a process entry point or which HTTP route it handles. These two fields
make context() self-sufficient for the bmad-dev flow.

- context: query STEP_IN_PROCESS now returns p.entryPointId; new
  ENTRY_POINT_OF lookup attributes routes only from processes where the
  symbol is the entry point (middle steps do not own the route) plus any
  direct Route->symbol handler edge (tRPC procedures outside any Process)
- context: new top-level is_entry_point (true only) and routes[] fields
  ({url, method?}), emitted only when non-empty to keep the diff additive
- query: raise default limit 5->10 so dense domains (tRPC action router
  with 20 chains, data-export with 9 flows) surface more of their flow
  set without an explicit param

(cherry picked from commit 004f5b0ba985fcef3dfac5e67a2f2f7262184215)

* docs(mcp): document chain_depth, routes, and entry-point flag; neutralize examples in comments

* fix(mcp): address code-review findings on tRPC entry points, queries, and dispatch

- entry-point scoring: optional-chain framework detection and normalize
  path separators before router-pattern matching (P1 crash on .js routers)
- tRPC extractor: emit controllerName as null (callers resolve via
  lookupClassByName; a router object stringified as name corrupted lookups)
- route dedup: key seenRoutes by method:url so GET/POST pairs survive
- legacy TS queries: drop curried-call patterns (arity-corrupting for
  overload resolution) and require non-array callee on pair member calls
- registry-primary TS query: mirror the non-array-callee predicate on the
  new pair member-expression patterns (fixes query compile error)
- group tool port: forward chain_depth into per-tool context args

* fix(mcp): nested tRPC router paths, controller-less route binding, query chain_depth

- trpc extractor: brace-depth nesting stack composes sibling router paths (bare router() import style included); merge-prefix dot normalization; strict publicProcedure allowlist gate; drop phantom router metadata

- call-processor: bind controller-less tRPC routes to same-file handlers via exact single-match symbol lookup; ambiguous or missing handlers skipped

- query/group query: optional chain_depth (0-3) enriches ranked processes with their context chain; fix _computeContextChain layer docstring

- tree-sitter TS/JS scope queries capture string-key function declarations; tRPC pattern scoring narrowed to server router files

- parse-cache schema bump to v103 for extractor and route-binding changes

- add trpc route extractor regression tests (9 cases incl. sibling nesting and merge prefix)

* Address PR review feedback (#3339)

Close remaining review threads: compact tRPC keys, comment-safe terminals,
quoted-key identifier HOC captures, group-query default alignment, and
LadybugDB label scalars on context chains.

* chore(autofix): apply prettier + eslint fixes via /autofix command

* test: pin PARSE_CACHE schema bump to 103 (PR #3339 review fixes)

* fix(ingestion): bind same-name tRPC handlers and surface HANDLES_ROUTE

Same-name procedures resolve by startLine, the extractor keeps nested paths
through multiline schemas, and context/query UNION HANDLES_ROUTE for leaf
procedures that never become Process entries.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Clamp group query bounds, drop HOC pair false positives, emit tRPC
terminal lines and hyphenated quoted keys, cap chain BFS concurrency,
and restrict the router utility exemption to accessor names.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Score JS/JSX tRPC routers like TypeScript, ignore inner db.query and
unrelated .merge calls, mask regex braces, and assert clamp tests invoke
the query mock.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(ingestion,mcp): emit-side HOC callback guards + MCP schema prettier (PR #3339 round 2)

* Address PR review feedback (#3339)

Treat `/` after return-style keywords as a regex, drop the synthetic
appRouter path prefix, and bind the create mutation via an inline callback.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Qualify query() docs so is_entry_point is promised only when the entry
symbol is among the search hits.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Emit tRPC terminals only at procedure paren depth, drop the filename
prefix on bare appRouter = router(), mask regex after if (), and cap
groupQuery member fan-out.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

De-duplicate context-chain BFS nodes reached through multiple frontier
edges, and bind tRPC identifier callbacks (`.mutation(handler)`) to the
handler symbol instead of the procedure key.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Apply LIMIT 50 after DISTINCT neighbors in the context-chain BFS, and
treat the official lowercase `procedure` builder as a tRPC procedure key.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Keep the later duplicate tRPC object-literal key so route binding matches
the handler JavaScript actually ships.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Compose same-file identifier-mounted tRPC subrouters so admin: adminRouter
emits the live admin.list path instead of an unprefixed /trpc/list.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Memoize tRPC identifier-mount paths so a depth-N chain stays linear, and
gate it with the build-free measure.mjs / baselines.json harness.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Compose identifier mounts without phantom /trpc URLs, bind wrapped and
multiline handlers, fail-close missing bench budgets, and reject query
page bounds before search.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Reject advertised MCP query bounds in group mode and chain_depth
instead of clamping or accepting non-integers.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Reject invalid groupContext chain_depth and ignore non-callable
same-file tRPC handler candidates.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Memoize live tRPC mount paths so the depth-N chain bench stays linear,
and render invalid group/MCP bounds without throwing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Keep t.merge('prefix.', namedRouter) procedures live by recording a
zero-hop mount so the unmounted-router drop does not hide them.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3339)

Recognize type-annotated `const adminRouter: AppRouter = t.router(`
bindings so identifier mounts still compose.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-21 09:44:42 +01:00
Gergő Magyar
620fd18a5c
feat(cli): reclaim leftover per-branch indexes after branch delete (#3338)
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* feat(storage): classify leftover per-branch index slots

Operators need a shared enumerator for deleted-branch leftovers before clean --stale or doctor can reclaim or report them.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(storage): reclaim a per-branch slot and empty branches/

Named clean --branch now shares one rm-then-registry helper so the last leftover slot can drop the empty branches directory, and a failed rm still keeps the retryable summary.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(cli): add clean --stale to reclaim leftover branch indexes

Operators can drop per-branch slots whose recorded branch is gone without remembering each name, while a git-list failure stays a no-op.

Co-authored-by: Cursor <cursoragent@cursor.com>

* feat(cli): report leftover branch indexes in doctor

Operators can see cwd orphaned per-branch slots and their size, then reclaim them with clean --stale, without doctor deleting anything.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): keep unreadable branch slots out of stale reclaim

A stat error other than ENOENT/ENOTDIR must not look like a missing
directory, or clean --stale --force drops the registry row and leaves
the slot on disk.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(cli): keep leftover-slot display helpers in the CLI layer

Preview and doctor share one size formatter and an i18n path for
registry-only rows, so storage no longer owns display copy.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): keep leftover reclaim moving after a registry drop failure

Catch removeBranchIndex rejections so --stale continues, match doctor
registry rows through canonicalizePath, and size leftover slots sequentially.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): match leftover-slot registry rows with canonicalizePath

Use the repo-manager path contract so clean --stale and --branch still
see registry-only leftover rows when cwd and the stored path differ.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): contain leftover-slot deletes and re-check live heads

Refuse symlink and junction escapes under branches/, unlink slot links
instead of removing through them, and skip --stale --force when a name
is a local head again.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

- Bound listLocalHeads spawnSync with GIT_PATH_LIST_MAX_BUFFER.
- Clarify that doctor leftover reporting is cwd-only, not registry-wide.
- Drop the MCP/serve assumption from clean --stale delete failures.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

- Describe disk-only leftover slots in --stale help, not only recorded branches.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(cli): stop doctor reclaim copy when heads cannot be listed

Doctor was naming clean --stale for leftover rows even when git cannot
list local heads, which is a no-op. Print the retry-git message instead (#3337).

Co-authored-by: Cursor <cursoragent@cursor.com>

* revert: drop Unreleased changelog notes from this branch

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(cli): keep live branch pins when a tag shares the name

%(refname:short) disambiguates against tags, so clean --stale treated
still-local heads as leftover. Fail closed on obstructed slots and
unlistable branches/ directories.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3338)

Bound leftover-slot listing, revalidate paths immediately before delete, and keep registry rows when a stray disk-only directory claims a recorded branch.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-20 16:03:18 +01:00
Parafee41
ee2feb7a5b
fix(cli): announce explicit registry alias changes (#3334)
* fix(cli): announce explicit registry alias changes

* fix: handle async rename observer failures

* Address PR review feedback (#3334)

- Invoke onRename after withRegistryLock releases so observer I/O cannot stall the registry
- Spy the rejecting observer and prove lock release via re-entrant registerRepo

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-20 08:28:28 +01:00
azizur100389
248db190ef Merge remote-tracking branch 'upstream/main' into codex/xaml-support-3202
# Conflicts:
#	gitnexus/src/core/run-analyze.ts
2026-09-20 03:34:26 +01:00
Twisted_Arrow
dcb2eb5cb4
fix(swift): resolve imports from Package.swift targets, not path segments (#3105)
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* fix(swift): match repeated SPM target prefixes

* test(swift): cover repeated SPM target prefixes

* test(swift): cover valid prefix before later partial match

* docs(swift): clarify target grouping parity scope

* docs(swift): clarify target grouping parity scope

* docs(swift): clarify target grouping parity scope

* fix(swift): resolve imports from Package.swift targets, not path segments

Stop fabricating IMPORTS from import Foundation onto a same-named folder.
Declare modules from Package.swift when the manifest is usable; keep
Sources/* for grouping and fail-open folder resolve minus SDK names.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep empty Package.swift declarations and nested .target() deps external

An inferred Sources/* folder is grouping-only. A dependency .target(name:) is not a module. Treat both as unresolved so import Foundation cannot bind to a decoy folder.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep implicit IMPORTS intra-group and gate linear Package.swift resolve

@_exported must not paint sibling files as implicit imports. A dedicated
bench pins declaration-only resolve and (t_4n/t_n)/4 linearity.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Honor member-only @_exported imports, skip comments while scanning
Package.swift factories, fail-open mixed helper-built target lists, and
block CoreData/CoreGraphics decoy folders on the inferred path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Match path: "." as the package root, skip block-commented Package.swift
factories, read import kind from the clause only, and skip capture tests
when the optional Swift grammar is missing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): scan Swift import-kind without nested regex backtracking

CodeQL js/redos flagged the comment-skipping IMPORT_KIND_RE; a linear walk keeps the same kind tokens.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): linear Package.swift factory scan and gate Swift context

parseSwiftPackageManifest re-walked every prefix for comments (O(n²) in factory count). Resume the scan and cover nested factories in one pass. Wire Swift into the import-target context arm now that resolveImportTarget is 5-arg.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Tighten Package.swift and import-text scanners: skip comments/strings, reject escapes, treat ident + [ as incomplete, and drop the unused factory-comment wrapper.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): prettier the @_exported availability fixture

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Judge Package.swift completeness from Package(...)'s own targets: argument instead of raw-text regexes, nest block comments when reading an import kind, and strip leading ./ from declared target paths.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Collect Package.swift factories only from Package(targets: [...]), fail-open on computed array elements, and treat // after a label colon as a comment.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Ignore stray factories when Package() exists but omits targets:.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3105)

Require the Package-scan seen box so the always-true undefined guard goes away.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-19 15:50:31 +01:00
azizur100389
a578747455
fix(swift): resolve nested constructors in extensions (#3308)
* fix(swift): resolve nested constructors in extensions

* fix(swift): preserve qualified extension owners

* Address PR review feedback (#3308)

Recover qualified Swift extension owners through public / attribute prefixes, and stop last-dot-guessing when source text is present.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): keep attribute text from stealing extension owners

Bound header recovery so @available messages cannot rekey a fragment, and still inject nested types when the Class scope has no bindings.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): nest comments and keep the public extension fixture valid

Review follow-up: skip nested /* */ in the header scan, put the Inner.Entry decoy in a parsed file, and mark Outer/Container/Entry public so the live fixture is valid Swift.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): recover Unicode identifiers as extension owners

The header regex was ASCII-only, so extension Café.Container keyed as Caf and dropped nested-type siblings. Match ID_Start/ID_Continue segments instead.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(swift): skip raw strings and decode UTF-8 scope columns

Header recovery treated #"..."# as an ordinary quote and sliced Tree-sitter byte columns as JS offsets, so a same-line Café prefix or a raw attribute message could steal or drop the extension owner.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-19 09:46:53 +01:00
Parafee41
795cf0e151
fix(swift): resolve inherited protocol extension calls (#3309)
* fix(swift): resolve inherited protocol extension calls

* fix(scope): gate inherited implicit receiver lookup

* fix(swift): resolve call result types by exact callee

* test(swift): align cache and local call expectations

* fix(scope): reconcile replay diagnostics

* fix(swift): preserve exact callable return types

* fix(swift): capture throwing async call results

* test(swift): refresh capture golden

* test(swift): refresh scope capture baseline

* fix(swift): require explicit callable returns

* fix(scope): preserve duplicate return metadata

* chore(scope): align index documentation

* Address PR review feedback (#3309)

Stamp only protocol/class-extension members (nested QN + SPM buckets),
arity-narrow implicit-this across MRO, and keep Swift type peeling out
of shared workspace-index via stripTypePreservingDecoration.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3309)

Stamp extension members even when the extension declares a nested type, keep inherited class members ahead of protocol-extension defaults, and report replay-only interface-dispatch fan-out drops.

Note: pre-existing failure in gitnexus tsc against an older gitnexus-shared dist not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3309)

Walk inherited implicit-this owners nearest-first so a nearer override wins, and tighten Swift owner-stamp tests.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-19 07:44:35 +01:00
dependabot[bot]
f465f6fb92
chore(deps)(deps): bump proxy-addr from 2.0.7 to 2.0.8 in /gitnexus (#3329)
Bumps [proxy-addr](https://github.com/jshttp/proxy-addr) from 2.0.7 to 2.0.8.
- [Release notes](https://github.com/jshttp/proxy-addr/releases)
- [Changelog](https://github.com/jshttp/proxy-addr/blob/master/HISTORY.md)
- [Commits](https://github.com/jshttp/proxy-addr/compare/v2.0.7...v2.0.8)

---
updated-dependencies:
- dependency-name: proxy-addr
  dependency-version: 2.0.8
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-19 07:43:35 +01:00
Gergő Magyar
ba39d5c009
feat(analyze): expose process-detection budget overrides (#3324)
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* feat(analyze): expose process-detection budget overrides (#3313)

Operators can raise or lower process count, branching, trace depth, and the entry-point candidate pool via CLI, .gitnexusrc, or GITNEXUS_* without changing shipped defaults. A budget-only change re-detects flows on the next analyze without --force.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): say invalid budget flags still honor env

A rejected --max-processes value was described as falling back to the built-in default even when GITNEXUS_MAX_* still won the next precedence tier.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(analyze): share process-detection defaults and skip unused walks

Keep DEFAULT_CONFIG aligned with the budget resolver and count symbols only when maxProcesses is still dynamic.

Co-authored-by: Cursor <cursoragent@cursor.com>

* style(analyze): wrap process-detection budget files for prettier

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(analyze): name the real process-detection default formula

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(analyze): stop calling maxProcesses*2 a hard trace quota

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): say invalid env budget tokens fall back to defaults

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): recertify process-detection after in-place FTS abort (#3324)

Persist processDetection.uncertified on the in-place FTS dirty stamp when
the budget mismatched so a flagless retry cannot keep rewritten flows.
Qualify .gitnexusrc fail-fast copy and tighten related tests.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): skip live dirty stamp on atomic incremental (#3324)

POSIX atomic incremental mutates a staging copy, so stamping live incrementalInProgress before swap made a crash force-rebuild a healthy index. Align analyze --help with CLI > .gitnexusrc > env > default.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(changelog): drop the atomic-incremental dirty-stamp note

The code fix stays; Unreleased no longer lists that recovery change.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): survive FTS SIGSEGV in --limit e2e

CREATE_FTS_INDEX can kill the setup analyze on some WSL hosts
(status null). Rebuild with --skip-fts and skip BM25-only
query --limit cases unless GITNEXUS_REQUIRE_FTS=1.

Refs #3324

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): mark update-check child at import

Writing refresh-started from fetch() raced a 30s poll against
cold tsx boot on a loaded default-project worker.

Refs #3324

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3324)

Isolate default-budget FTS crash-marker tests from GITNEXUS_MAX_* env, assert uncertify-before-FTS order and deferred flow detection on park recovery, drop the dangling "then" from entry-point help, and correct stale streamGraphEmit docs without skipping the process-detection stamp.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(changelog): drop Unreleased process-detection notes

Keep the #3313 / #3322 code; Unreleased changelog matches main until release.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-18 13:37:15 +01:00
Gergő Magyar
9d95af9fc3
refactor(analyze): move detected-branch sanitization off CLI config (#3325)
* refactor(analyze): load detected-branch sanitization from core git-ref

Keep the never-throw helper next to validateBranchName so run-analyze no longer imports CLI config parsing.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): warn once when a checkout name cannot label the index

After the write lock settles, emit a single onLog warning and keep writing the workspace slot. Pin that run-analyze does not import CLI analyze-config.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): escape hidden checkout names in the detect-reject warning

Keep the rejected ref visible in onLog without replaying bidi or quote characters, and document that sanitizeDetectedBranch rethrows unexpected errors.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): keep detect-reject warnings on one line (#3325)

Git-legal U+2028/U+2029 checkout names were rejected as whitespace but left raw in the new onLog warning, so the message split across two lines. Escape those code points in the formatter without changing validateBranchName.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(analyze): keep C1 and Unicode spaces in detect-reject warnings

Escape NEL and remaining whitespace as \uXXXX so stripControlCharacters cannot drop or disguise the rejected checkout name.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-18 11:03:24 +01:00
Gergő Magyar
56feb85c97
chore: compile first-party packages with TypeScript 7 (#3311)
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* fix(web): drop TypeScript 7-incompatible tsconfig paths

Remove baseUrl and the dead ../shared include so web project references typecheck under TypeScript 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): parse TypeScript with a TypeScript 6 API package

Keep AST guards working after the named typescript package becomes 7, which no longer ships the Compiler API.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(lint): pin root TypeScript to the 6 API package

Give typescript-eslint a TypeScript 6 peer so syntax-only lint still installs after CLI and web move to TypeScript 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(deps): compile first-party packages with TypeScript 7.0.2

Unify CLI and web on the same native compiler line as gitnexus-shared so typecheck and emit no longer split 5.x versus 7.x.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(ci): describe parent TypeScript 7 as the shared compiler

Stop saying web compiles shared with TypeScript 5 now that the parent lockfile is 7.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): compile shared from parent TypeScript on Vercel and skill-evolution

Stop isolated npm installs in gitnexus-shared so those paths do not pull a second TypeScript 7 optional-platform tree.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs: record TypeScript 7 typecheck and Dependabot major-split policy

Keep contributor typecheck commands, and stop Dependabot from bumping shared onto a different TypeScript major than CLI and web.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lint): pin root TypeScript to 5.9 so npm ci satisfies eslint peers

typescript-eslint 8 peers typescript below 6.0.0, so the typescript6 alias made quality lint npm ci fail with ERESOLVE.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): drop the TypeScript 6 Compiler API package

TypeScript 7.0 has no classic createProgram surface, so parse-only
guards now use Babel and Mode 4 uses the TypeScript 7 Checker.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs: align contributor setup with parent TypeScript 7 compile

Stop telling clones to npm-install gitnexus-shared; CI and Vercel already emit that package from a parent lib/tsc.js shim.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(web): typecheck React JSX on TypeScript 7 with explicit DOM libs

TypeScript 7 no longer implies DOM or auto-includes @types, so the web app must declare React/JSX settings while Vite keeps plugin-react.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test: pin Vercel --include=dev and share parse-only string helpers

Production npm ci omits the web TypeScript unless --include=dev is on that install. Move staticStringValue next to the other Babel walk helpers so CLI help and contract tests share one source.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-17 22:16:00 +01:00
Gergő Magyar
a2e1710ac0
fix(embeddings): stop Caching embeddings OOM on large incremental analyze (#3310)
* fix(embeddings): spill cached vectors to a Float32 temp file

Keep restore metadata in RAM and write embeddings once the in-memory
row limit is exceeded so incremental analyze can survive large caches
without a full-table number[] heap (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): stream CodeEmbedding cache under the connection lock

Spill vectors once the in-memory limit is crossed and fail the load
instead of adopting an empty snapshot, so incremental analyze cannot
OOM or quietly drop the restore cache (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(analyze): restore cached embeddings from a streamed spill snapshot

Hold row metadata across wipe, materialize 200-row batches, and treat
cache-load failures as warn-and-continue so incremental analyze can
preserve vectors without a full-table heap (#3306).

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Loop spill writes until the full vector lands, keep materialize failures out of the insert catch and the Phase 4 hash skip-set, and assert spilled restore subsets by node id instead of scan order.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Discard only this analyze run's embedding spills so a concurrent analyze on another index keeps its restore file, and isolate the default in-memory limit test from inherited env.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3310)

Mark a node stale when any restore batch fails so leftover chunks are deleted and rembedded, and exercise a full-length bad-magic spill header.

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-17 16:18:29 +01:00
dependabot[bot]
a67e74cdb6
chore(deps)(deps): bump js-yaml from 5.4.1 to 5.4.2 in /gitnexus (#3304)
Bumps [js-yaml](https://github.com/nodeca/js-yaml) from 5.4.1 to 5.4.2.
- [Changelog](https://github.com/nodeca/js-yaml/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nodeca/js-yaml/compare/5.4.1...5.4.2)

---
updated-dependencies:
- dependency-name: js-yaml
  dependency-version: 5.4.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-17 07:06:03 +01:00
azizur100389
e528c14e09 Merge remote-tracking branch 'upstream/main' into codex/xaml-support-3202 2026-09-17 02:01:39 +01:00
Matt
8b21ce3b95
feat(auto-sync): preserve PDG indexes across updates (#3290)
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Skill copy sync / shipped skills drift guard (push) Has been cancelled
* feat(auto-sync): preserve PDG indexes across updates

* docs(auto-sync): document durable PDG synchronization

* Address PR review feedback (#3290)

- Correct requestedPdg state docs for threshold-skipped syncs
- Defer coalesced follow-up and skip failure-threshold counts for leftover-worker / retryable lock waits
- Document the pdg tri-state and caveat the 30m/5m example

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): raise Windows Ladybug #605 hang budget off the CI tail

Windows 3/3 typically finishes this native race in ~15s but has a 56s tail; 60s false-positives as deadlock. Keep the POSIX 60s detector and the completion/.shadow/row-count contract.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-16 20:12:45 +01:00
azizur100389
8f11faaa81
Merge branch 'main' into codex/xaml-support-3202 2026-09-16 12:19:43 +01:00
azizur100389
c3b7c4a9b4 fix(xaml): index escaped literal keys and verify COPY recovery 2026-09-16 11:52:30 +01:00
Abhinav Pandey
0ede6ae501
fix(rust): respect Cargo target boundaries in name fallback (#3294)
* fix(rust): respect Cargo target boundaries in name fallback

* fix(rust): read Cargo sources through validated file descriptors

* fix(rust): require matching imports for crate-root guesses

* fix(rust): require Cargo root identity for cross-target imports

* fix(rust): enforce Cargo identity across fallback imports

* fix(rust): keep Cargo membership on typical derive/macros (#3294)

Abort only genuine unknown expansion, ignore Cargo artifact layouts instead of every `target` path segment, and require a covering import for unanswered crate-root name fallback so #3253 still holds on ordinary Rust sources.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(rust): gate Cargo target membership in CI (#3253)

Add a parse-dispatch-rounds-style bench so derive/macro abort, target-path globs, and superlinear membership walks fail in CI instead of staying graph-invisible.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(rust): verify Cargo macro and re-export evidence

* style(bench): format Cargo membership benchmark

* fix(rust): require imports for cross-file root guesses

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-16 11:36:07 +01:00
azizur100389
baca584645
Merge branch 'main' into codex/xaml-support-3202 2026-09-16 10:35:30 +01:00
Gergő Magyar
ebbcd5b0b4
fix(mcp): name the indexed ref on hot read tool staleness (#3291) (#3293) 2026-09-16 07:29:04 +00:00
dependabot[bot]
66421ef42f
chore(deps)(deps-dev): bump @types/node in /gitnexus (#3297) 2026-09-16 06:08:57 +01:00
azizur100389
676f674dc9 fix(storage): preserve Windows deletion and checkpoint contracts 2026-09-15 18:06:34 +01:00
azizur100389
81a47c8a78 Merge upstream/main and bound incremental COPY workers 2026-09-15 14:09:38 +01:00
Gergő Magyar
ac9a4e9abd
fix(embeddings): keep ONNX off the install and analyze critical path (#3287)
Some checks are pending
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* fix(embeddings): isolate local ONNX inference in a child_process sidecar

The analyze parent must not load onnxruntime-node. Fork a sidecar for
vectors only and reap it on worker exit; keep Ladybug writes in-process.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): share the sidecar client across MCP, serve, and sync

Query hosts now use the core façade instead of a second in-process ONNX
embedder. Search skips an empty table, sync reaps beside closeLbug, and
ready means the stack is resolvable rather than a warm singleton.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): refuse Intel Mac and unloadable prefix before npm heal

Analyze, sync, install, and the sidecar client now consult the platform
blocker before forking or downloading the optional stack. HTTP stays the
escape hatch; wasm is not treated as a rescue.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(embeddings): take the ONNX stack off default npm install

Pins live in gitnexusEmbeddingStack. embeddings install writes prefix
overrides before npm spawn. Leftover 1.6.12 package-first trees are residual.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(publish): drop grammar source from the published tarball

Every vendored grammar has 6/6 prebuilds, so files ships those plus
Leiden and FTS instead of parser.c. First ship stays above 80 MiB.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): match MCP missing-stack warn to the R20 copy

Default install no longer calls the stack optional, so the once-per-backend
stderr assertion must look for the new lead line.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(review): bound sidecar death, cancel writes, and publish-file guards

Init-time native crashes no longer respawn a child on every query. Local
embedBatch honors AbortSignal after sidecar return, MCP query() surfaces
vector-lane degradation, disconnect always reaps, and the grammar prepack
guard checks files globs instead of on-disk prebuilds.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(embeddings): share runtime preflight and sidecar reap helpers

Analyze and embeddings-sync used the same blocker/prefix/install gate
with different error routing. One assessment keeps those paths aligned
without changing CLI vs thrown-error behavior.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3287)

Keep a reaped sidecar from resetting its replacement, wait for dispose,
tighten the publish-files guard, and stop assuming a leftover ONNX tree in CI.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Clear the sidecar reap timeout, add init IPC slack, and isolate embeddings-sync tests from HTTP-mode env.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): unstub globals after sidecar HTTP-mode tests

Keep a leaked fetch stub from failing assertions out of later tests in the same file.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(embeddings): pin sidecar success cases off darwin/x64

The runtime blocker reads the real process platform before the fork mock, so local-success tests must not inherit an Intel Mac host.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Keep vector degradation per query, treat leftover Intel-Mac stacks as not ready, and document that the CLI image no longer ships ONNX.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Simplify embedding sidecar shutdown and search hot paths

Drop redundant sidecar reaps and unused child helpers, and run FTS alongside semantic search.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Share HF attempt parsing with the sidecar init deadline, abort embed waits without killing the child, and restore last init options on recreate.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Treat sub-1 HF attempt env values as invalid, and drop leaked sidecar waiters when IPC send throws.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address remaining PR review feedback (#3287)

Keep sidecar init on a shared chain; each waiter can abort only its own wait.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(ci): declare embedding-table existence probe as unordered LIMIT

The empty-table skip in semanticSearch is existence-only; declare it so the #2787 determinism guard stops failing coverage shard 3/3.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-15 12:11:47 +01:00
dependabot[bot]
dcf980581c
chore(deps)(deps-dev): bump @types/node in /gitnexus (#3289)
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 26.4.1 to 26.5.0.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node)

---
updated-dependencies:
- dependency-name: "@types/node"
  dependency-version: 26.5.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-15 07:14:30 +01:00
dependabot[bot]
29f4ce0592
chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#3284)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.4 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-14 10:57:47 +01:00
dependabot[bot]
8a10383563
chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#3281)
Bumps [@babel/generator](https://github.com/babel/babel/tree/HEAD/packages/babel-generator) from 8.0.0 to 8.0.5.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.5/packages/babel-generator)

---
updated-dependencies:
- dependency-name: "@babel/generator"
  dependency-version: 8.0.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-14 10:57:18 +01:00
azizur100389
4828dcc6bb Merge upstream main and batch XAML document reads 2026-09-14 10:10:45 +01:00
Gergő Magyar
21a52af1d4
fix(lbug): ship FTS per-platform and recover in-place native aborts (#3274)
* fix(lbug): pin Ladybug core so Dependabot cannot ship a skewed FTS artifact

The extension version is a separate upstream constant. Ignore daily core bumps and fail the pairing gate when the committed manifest does not name the installed core.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): make doctor and CI FTS gates resolve the packaged artifact

Doctor and the REQUIRE_FTS file gates still treated an empty ~/.lbdb as
unavailable, which would turn three CI jobs red once analyze stops
installing into that tree.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): name native-abort and tuple-missing so analyze cannot mis-advise

The CLI summary's trailing else treated every unknown skip reason as a
missing extension. New crash and platform causes must get their own
remedies, not a network-install hint.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): delete the dead read-path FTS index create

ensureFTSIndex had no production callers and swallowed read-only
CREATE_FTS_INDEX failures, which hid the only signal that a reader
tried to write.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): vendor per-platform FTS artifacts so analyze needs no host install

Keyword search depended on a CDN fetch into ~/.lbdb. Shipping the five
published tuples inside the package makes air-gapped and ignore-scripts
installs load the same artifact the publish gate checksums.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): load the packaged FTS artifact before any network install

Analyze still required a CDN fetch into ~/.lbdb even when the package
already shipped the file. FTS now path-loads the vendored tuple first
and records source labels so a later truncated home copy cannot steal
the diagnosis.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): diagnose a core/extension version skew instead of a missing runtime

A structurally valid FTS artifact whose path version disagrees with the
packaged pin must name both versions, not prescribe VC++ or OpenSSL.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): stamp an FTS phase so repair stays usable after an in-place abort

A native CREATE_FTS_INDEX abort leaves no skip reason; the next run infers
it from the dirty flag, and --repair-fts must not treat that phase as a
half-written graph.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): park an in-place FTS crash WAL without wiping the graph

An FTS abort after a successful checkpoint must reopen the live index on
macOS, Windows, and Linux. Staging never parks the live WAL; readers keep
today's large-WAL refusal.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): refuse read-only opens of an FTS-poisoned WAL

MCP and serve cannot repair a leftover in-place abort. Fail before the
native open and name --repair-fts, on macOS, Windows, and Linux.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): name a vendor-neutral Windows OpenSSL prerequisite

OQ1 is unanswered here so GitNexus does not ship OpenSSL DLLs. Windows
FTS now asks for a system OpenSSL 3 runtime instead of Git Bash PATH.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): inject the FTS vendor root and redact it on HTTP and MCP

Path-loaded artifacts no longer vary with HOME. Tests pass an injected
vendor tree and assert search warnings never leak a filesystem path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(lbug): document load-only as the global FTS install default

Analyze still overrides to auto. Packaged per-platform artifacts load
before any network install on macOS, Windows, and Linux.

Co-authored-by: Cursor <cursoragent@cursor.com>

* docs(lbug): format the FTS install-policy README table

Prettier does not run on Markdown in pre-commit, so the U10 table wrap
needs its own formatting commit.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): skip FTS CREATE after a persisted native abort

A recovered analyze run was retrying CREATE_FTS_INDEX from skipReason
alone. Keep that skip until --repair-fts, fail closed on unsupported
tuples, and honor the checkpoint warrant for park/repair.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): honor checkpoint flushed warrant and align FTS tests with packaged vendor

A no-op CHECKPOINT must not satisfy the FTS park warrant, and CI still asserted HOME-only FTS isolation after analyze started path-LOADing the packaged artifact.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): accept a nonempty incremental write set in the #2790 recovery check

FTS-phase recovery can incremental-add files (changed=0, added=1). That is not the #2790 empty-diff wipe skip.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): compare FTS home versions to the core pin and tighten the publish filename gate

Ladybug's ~/.lbdb/extension directory is the runtime/core version; treating it as the artifact version false-diagnosed skew. The publish guard now rejects a path-escaping filename the same way the fetch script does.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(lbug): seed FTS e2e fixtures from the packaged vendor artifact

A machine with no ~/.lbdb copy should still run the vendor-survivorship cases; the seed no longer depends on HOME or a network install.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3274)

Keep in-place FTS abort evidence after persist so a second CREATE abort
cannot fail-open readers, and close the CLI, loader, embed, and e2e gaps
the review called out.

Note: full npm test hit Ladybug worker-pool startup failures under memory
pressure; tsc and 180 targeted unit tests passed.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3274)

Run the vendored-path symlink guard on the OS matrix, put e2e HOME
fixtures on Ladybug's real extension layout, pin the embed crash-WAL
gate before the writable open, and let analyze writers park through
missing-shadow recovery.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): keep --repair-fts CI green after vendored-first FTS

Never-installed warning fixtures must not inspect a packaged vendor binary, and a failed dirty restamp must not abort an otherwise successful --repair-fts run.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cli): give the #1169 analyze e2e the same 90s Windows budget as its sibling

The first #1169 persist-meta case was still on a 60s spawn/it budget and was killed banner-only on windows-latest after the FTS warning fixture no longer failed the shard first.

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(ci): reweight Windows shards after the FTS e2e grew

Vendored-first HOME fixtures pushed fts-extension-e2e to ~6 minutes on windows-latest, so the old 146s weight packed it with skills-e2e and blew the 20-minute watchdog.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-14 08:52:24 +01:00
Gergő Magyar
c4ecf398de
chore: release v1.6.12 (#3272)
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2026-09-12 22:16:01 +01:00
mengkaka
79543c8f83
feat(storage): add configurable index storage and content retention tiers (#3060)
* feat(storage): add configurable index storage and content retention tiers

Rebase #3060 onto current origin/main. Keep GITNEXUS_STORAGE_PATH,
GITNEXUS_STORAGE_ROOT, and GITNEXUS_CONTENT_RETENTION, and fold in
main's FTS skip, embed-session, and help-text updates.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Keep legacy registry rows on the local storage fallback, resolve
symlinks before the destructive-path guard, and align hook lookup
with CLI branch slugs, branch-slot metadata, and longest-path match.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Only list swept upload directories after a successful removal so
callers cannot treat a permission or transient rm failure as gone.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Document that getStoragePath may consult registered storage while
this module still does not mutate the global registry.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): close review findings for external indexes and retention

Re-inspect ownership under the analyze lock, fail-closed when the
registry file is missing, and keep skip-git hook discovery plus
retention fields on HTTP/MCP list surfaces. /api/file stays 410
unless contentRetention is full.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3060)

Treat lock-only index dirs as empty, honor HTTP --force storage policy, and prefer registered plus branch-aware slots in hooks and augment.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3060)

Keep hook fallbacks inside the current worktree, compare foreign-local slots canonically, and make storage fixtures survive ownership validation.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Fix macOS hook test expecting realpath'd registry paths.

resolveHookRepo returns the written registry path, not a filesystem realpath, so the assertion must match that.

* Address gitnexus-check warnings on hook install docs and slot tests.

The Cursor troubleshooting list omitted registry-query.cjs, and the writable-slot test only checked that isDirectory exists instead of that the path is a directory.

* Align the HTTP catalog source-scan with skippable resolveRepo validation.

resolveRepo lists fresh repos with validate: options.validateStorage !== false so DELETE can skip prune; the test still required a literal validate: true.

* Harden storage path sinks so CodeQL path-injection and ReDoS alerts clear.

Contain every filesystem probe inside the resolved storage slot with the inline path.relative idiom, reject filesystem-root slots, and trim slot basenames in linear time.

* Settle bridge stamps before writing so CI size/mtime matches stay stable.

LadybugDB can still flush into bridge.lbug after close+rename; persist whole-millisecond mtimes and wait for consecutive stats to agree so a freshly written pair matches.

* Type the settled bridge stat as fs.Stats so tsc does not see bigint.

Awaited<ReturnType<typeof fsp.stat>> collapsed the bigint overload and broke prepare/typecheck on CI.

* Keep the bridge mtime stamp exact so same-size swaps still fail the pair check.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Wrap the bridge stamp predicate so prettier --check stays green.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Require a quiet interval before stamping a settled bridge file.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Reuse shared storage and settle helpers instead of local copies.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-12 20:31:55 +00:00
pcaceres-hazloagil
a8736a07d0
fix(lbug): checkpoint race in pool-adapter.ts + pin @ladybugdb/core to 0.18.3 (#3189)
* fix(lbug): await evict-then-reopen so it can't race the checkpoint

closeOne() closed the evicted repo's shared Database with a
fire-and-forget `db.close().catch(() => {})` (no await). Both call
sites that evict-then-reopen — evictLRU() right before doInitLbug
opens the new connection, and the "idle & changed" path in initLbug —
proceeded to open the next repo's connection immediately after,
without waiting for the evicted repo's close (and the checkpoint it
triggers) to finish. On the real engine the new open can then collide
with that still-in-flight checkpoint, surfacing on any read as:

  Runtime exception: Cannot open database in read-only mode while
  checkpoint is in progress. Please retry later.

This reproduces reliably once more than MAX_POOL_SIZE (5) distinct
repos are queried within a short window (self-hosted deployments with
more than a handful of active repos hit it routinely), and gets worse
under genuinely concurrent requests for different repos, since nothing
serialized pool mutations across callers either.

Fix:
- closeOne / evictLRU are now async and await their internal work
  (closeOne's own close() call; evictLRU's call to closeOne), closing
  the race within a single initLbug call.
- The exported initLbug is wrapped in a small async mutex
  (initLbugInner does the real work) so concurrent initLbug calls for
  different repos serialize instead of each racing their own
  evict-then-reopen against the others.
- closeLbug's two closeOne() calls are now awaited too — closeOne
  becoming async meant closeLbug could resolve before pool.delete()
  had actually run, which a repo-pinning test caught (isLbugReady()
  briefly still true right after a resolved closeLbug()).
- closeOne now deletes the pool entry (and clears its pin, and
  notifies pool-close listeners) BEFORE the awaited db.close(), not
  after. Review caught that the previous order left a "zombie" entry
  reachable via pool.get(repoId) — closed=true, available emptied, but
  still present — for the duration of that await; a same-repo
  query/init landing in that window would see isLbugReady() as true
  and hit a "Connection pool integrity error" in checkout() instead of
  just reopening. Deleting first removes the entry entirely, so a
  concurrent caller takes the normal fresh-open path instead.

Verified two ways:
- Against the compiled bundle (`ghcr.io/abhigyanpatwari/gitnexus`,
  1.6.10/1.6.11 — pool-adapter.js is byte-identical between them): an
  A/B docker build with 7 tiny local repos and genuinely concurrent
  (parallel, not sequential) /api/graph requests goes from 7/7 failing
  to 7/7 succeeding on a freshly-analyzed pool.
- Unit tests here (mocks @ladybugdb/core the same way as
  lbug-pool-pinning.test.ts): one asserts the evicted repo's close()
  completes before the initLbug call that triggered the eviction
  settles; another asserts closeLbug's own promise doesn't resolve
  before the underlying close() does. Both gate their mock's close()
  on a real short delay and were confirmed to fail against code that
  drops the corresponding await.

Note: a second, deeper issue was also observed in the docker A/B
setup — repeated rounds of concurrent access show a repo that has
gone through one evict+reopen cycle can become permanently unable to
reopen for reads, identically with and without this fix. That did not
reproduce with mocks and isn't understood yet; filed separately as
#3186, which stays open and untouched by this PR — this fix closes a
real, root-caused bug on its own but does not resolve #3186 by itself.

Second review round caught a follow-up: the idle-timeout sweep calls
closeOne(repoId) directly, outside of initLbug's poolLock. Now that
closeOne deletes the pool entry before its awaited close(), an
unsynchronized idle close racing a same-repo initLbug could let that
initLbug treat the repo as absent while the idle close (and its
checkpoint) is still in flight — reopening the same class of race this
PR exists to close, just via the idle path instead of LRU eviction.
Routed the idle sweep's closeOne call through withPoolLock too, so it
serializes against initLbug the same way evictLRU already does.
(Tried to add a mocked regression test for this specific interleaving;
dropped it — the mock's dbCache-reuse path masks the difference
regardless of the fix, so it could not be made to discriminate
reliably. Fixed by direct code review instead, same as the note below
already does for the native-engine-specific checkpoint collision.)

Also removed the initLbugInner per-repoId initPromises dedup map: with
every initLbug call now serialized through poolLock, a second call for
a repoId already being initialized cannot observe a pending promise in
initPromises (the first call always fully completes, including its
finally-block cleanup, before the lock releases) — the branch was dead
code the bot correctly flagged twice.

Third review round caught two more follow-ups on the same theme (both
introduced by making the idle sweep route through poolLock):
- closeLbug()'s no-arg ("close everything") branch still calls closeOne
  directly in a loop over a snapshotted pool.keys(), without the lock —
  an initLbug racing that loop could register a fresh entry the
  snapshot never saw, leaving it resident after a call meant to empty
  the pool. Wrapped the snapshot+loop in withPoolLock.
- The idle timer callback can now sit queued behind an in-progress
  initLbug before its turn arrives, and that init (or a concurrent
  touchRepo()) can refresh lastUsed in the meantime — so the pre-lock
  idleness check taken when the timer fired can be stale by the time
  it actually runs. Re-check lastUsed/checkedOut again inside the lock,
  right before closing, instead of trusting the outer snapshot.

* fix(deps): pin @ladybugdb/core back to 0.18.3

Bisected the "checkpoint is in progress" symptom (root cause #2, not
touched by the pool-adapter.ts fix in the previous commit) down to a
single dependency-version-bump commit with zero application code
changes: e91ea0ca, "chore(deps): bump @ladybugdb/core in /gitnexus",
0.18.3 -> 0.19.0.

Confirmed both ends independently, on the actual official build
(Dockerfile.cli), no engine-swapping involved:
- v1.6.9 (native 0.18.3, as released): 7 tiny repos, 5 rounds of
  genuinely concurrent /api/graph requests each — 0/35 failures.
- v1.6.10/v1.6.11 (native 0.19.1, as released): same repro — fails
  every round from round 2 onward.
- v1.6.11 completely unmodified (not even this repo's own fix) with
  ONLY @ladybugdb/core downgraded to 0.18.3 (real `npm install
  @ladybugdb/core@0.18.3 --save-exact`, full rebuild, no application
  code touched): 0/56 failures across 8 rounds.

That last point isolates this fully: none of GitNexus's own JS changes
between 1.6.9 and 1.6.11 (including the dbIdentity/rebuild-detection
logic added in #2614, or anything in sidecar-recovery.ts) are
load-bearing for this symptom — the regression lives entirely in the
native engine, introduced somewhere between 0.18.3 and 0.19.0.

Full unit suite green with this pin (14818 passed, same 2
environment-specific flakes present on main regardless of this change
— macOS realpath symlink resolution in analyzer-identity.test.ts and a
subprocess retry-count assertion in review-agent-workflow.test.ts,
neither touches lbug/ladybugdb).

This is a pragmatic pin, not a long-term fix: 0.19.0+ presumably ships
fixes of its own that 0.18.3 lacks, and the actual regression should
still be root-caused and fixed upstream (tracked at
LadybugDB/ladybug#919, which a maintainer is already engaging with).
Recommend re-evaluating this pin once that's resolved.

* fix(lbug): serialize closeLbug's single-repo branch with the pool lock

Review on PR #3189 caught the same class of gap as three earlier
rounds on the previous PR: closeOne now deletes the pool entry before
its awaited db.close() finishes, so an initLbug(repoId, ...) racing
this branch could acquire the lock right after the delete, see no
cached entry, and start opening a fresh connection while this close's
checkpoint is still in flight — reopening the exact race withPoolLock
exists to close. The no-arg ("close everything") branch already went
through the lock; this makes the single-repoId branch consistent with
it.

npx tsc --noEmit clean, full lbug/pool unit suite (19 files, 257
tests) green.

* fix(lbug): address azizur100389's review findings on PR #3189

- pool-adapter.ts: the idle timer's in-lock recheck already re-verified
  lastUsed/checkedOut against a fresh snapshot, but not pinnedRepos —
  pinRepo() can run while the timer callback is queued behind an
  in-progress initLbug, and the timer would then still close a repo the
  caller just pinned, dropping that lease entirely (LOW finding).

- Storage-version mismatches (opening an index written by a different
  @ladybugdb/core build, e.g. after downgrading the pinned dependency)
  surfaced as GitNexus's generic "unavailable, retry later" and were
  retried LOCK_RETRY_ATTEMPTS times for nothing, since the file's
  on-disk version never changes between retries (HIGH/blocking
  finding). Added isStorageVersionMismatchError() to lbug-config.ts and
  wired it into both places that actually open a LadybugDB connection:
  pool-adapter.ts's doInitLbug (used by MCP tools/wiki/group-sync) and
  lbug-adapter.ts's doInitLbug (the separate single-connection path
  /api/graph and /api/query use via withLbugDb). Both now fail fast
  with an actionable "run `gitnexus analyze --force`" message instead.

  In lbug-adapter.ts the check wraps both openLbugConnection and
  ensureReadOnlyConnectionUsable: the native engine's storage-version
  check isn't necessarily enforced until the first real query runs
  (ensureReadOnlyConnectionUsable's own probe), so openLbugConnection
  alone can succeed on a mismatched file.

Verified end-to-end against the real native engine: registered a repo
under the pinned 0.18.3 engine, swapped its .gitnexus/lbug file for one
written by an unmodified v1.6.11 (0.19.1) image, restarted the server
to bypass in-memory connection caching, and queried /api/graph — got
the actionable message instead of the generic retry-later error.
`npx tsc --noEmit` clean; full lbug/pool unit suite (36 tests, 14
files) green.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(test): export isStorageVersionMismatchError from wholesale lbug-config mocks

doInitLbug's catch block (both pool-adapter.ts and lbug-adapter.ts) now
calls isStorageVersionMismatchError() unconditionally on every open
failure, but 5 test files wholesale-mock lbug-config.js without that
export — Vitest rejects access to an undeclared mocked export, so any
test driving an error through that catch block (e.g. the WAL-recovery
and evict-reopen-race suites) breaks (bot finding on PR #3189).

Added isStorageVersionMismatchError (stubbed to always return false —
none of these suites exercise the storage-version path) and
STORAGE_VERSION_MISMATCH_SUGGESTION to each mock, matching the existing
isWalCorruptionError/WAL_RECOVERY_SUGGESTION pattern already there.
analyze-pagesize-error.test.ts was not affected: it mocks lbug-config.js
via importOriginal, so it already re-exports the real function.

Verified: the 6 affected files (48 tests) pass; npx tsc --noEmit clean.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(test): export isStorageVersionMismatchError from remaining lbug-config mocks

The previous commit fixed the 5 test files that wholesale-mock
lbug-config.js via vi.mock(), but missed 4 more that mock it via
vi.doMock() instead (a different Vitest API my earlier grep for
vi.mock(...) didn't match): lbug-adapter-wal-schema.test.ts (8
call sites), lbug-checkpoint-lifecycle.test.ts (12 call sites), and
basicblock-callee-ids-schema.test.ts / convex-metadata-persistence-
contract.test.ts (1 shared mock factory each). All of these exercise
lbug-adapter.ts's doInitLbug, which now also calls
isStorageVersionMismatchError() unconditionally on every open failure
— caught by actually running the full suite rather than trusting the
`-t lbug` name filter, which doesn't match these files' test names.

Verified: all 10 affected files (97 tests) pass; npx tsc --noEmit
clean. Full suite rerun in progress to confirm no other gaps remain.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* fix(lbug): fail-fast storage-version mismatch and unlock pool lock-retry

Incremental analyze was warning through a version mismatch, and lock-retry
sleep held the pool mutex so one analyze-locked repo blocked every other
init. Fail immediately with the rebuild hint on both adapters, and sleep
outside withPoolLock so other repos can open during backoff.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3189)

- Serialize initLbugWithDb on withPoolLock so it cannot attach to a Database
  closeOne is still checkpointing.
- Delete pin leases again after the awaited close so a pin acquired during
  teardown cannot survive onto the next init.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-12 14:49:21 +01:00
Gergő Magyar
ceaff27c1e
fix(parse-cache): retire a chunk whose durable generation could not be reset (#3271)
* fix(parse-cache): retire a chunk whose durable generation could not be reset

#3200 skipped the parse-cache write when `prepareDurableParsedFileChunk`
failed, but the chunk hash was already in `usedKeys` from the lookup. When a
previous generation existed on disk — reachable because the coherence gate
re-dispatches a chunk whose `.v8` shard is live but whose durable shards are
unreadable — `saveParseCache` copied that old shard forward, and the durable
prune, which keeps exactly the saved keys, retained the mixed directory. The
next run then served a warm hit out of a directory the previous run had
already decided it could not account for.

Retire the hash instead of only skipping the write:

- `ParseCache.staleKeys` is a transient set that `saveParseCache` filters out
  of its key list. Filtering at save is what makes it survive the post-parse
  key merges in run-analyze (#2106 sibling fold, unreadable-meta retention),
  and it reaches both stores at once because the durable prune keeps exactly
  the keys `saveParseCache` returns.
- The hash is retired at the reset-failure site, which runs unconditionally.
  The parse-cache write branch sits behind `rawResults.length > 0`, so a chunk
  whose worker round returns nothing would never have been retired there.
- Worker-quarantined chunks get the same treatment for the same reason: they
  also reach the save with no in-memory entry, which is what triggers the
  copy-forward. That branch was previously unreachable when the worker died on
  the chunk and returned no results.
- Guard the durable prune's non-survivor `fs.rm`. The causes that break the
  reset break that delete too, and it sat outside the validation try — one
  undeletable directory aborted the loop and cost every remaining chunk its
  index entry.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* fix(review): apply review findings

Retire a chunk only when a generation nobody cleared is still on disk.
`prepareDurableParsedFileChunk` is rm-then-mkdir, and the catch could not tell
the two apart: an rm that succeeded before a failing mkdir leaves NO directory,
so the workers recreate it and write a clean generation. Retiring there
discarded a good `.v8` for no safety gain — and under a correlated failure
(an empty durable index turns every chunk into a re-dispatched miss, then a
descriptor burst rejects the resets en masse) it would have wiped both shared
stores for every branch, where the pre-#3204 posture cost only the writes.
`durableChunkHasStaleShards` is the discriminator.

Finish the delete guard on the path that runs before it. The staged→live
overlay in `mergeStagedDurableParsedFileStore` awaited `replaceDurableChunkDir`
unguarded, so on the cold-rebuild path one undeletable directory threw out of
the merge before the prune ever ran — the durable index was never rewritten and
a retired chunk kept its directory. Same log-and-continue treatment, plus
best-effort handling of the two `.replacing` backup removals.

Aggregate the prune's delete-failure warning: a store-wide cause hits every
non-survivor, and one line per directory buries the message that matters.

Tests:
- Guard the chmod-based prune test with the repo's `skipIf` for root/Windows
  and assert the directory survived, so it cannot pass vacuously where the
  delete succeeds.
- Add a two-chunk control: one chunk's reset fails, and the sibling must stay
  warm through the next run. One chunk plus a global spawn marker could not
  tell "retires the failing chunk" from "retires everything".
- Add the rm-succeeded/mkdir-failed case, which must NOT retire.
- Model both post-parse merges in the R4 test (the sibling fold re-adds the
  key, the unreadable-meta fallback unions `entries`), and move the in-memory
  `entries` assertion to a direct helper test — the sharded path never
  populates `entries`, so the old assertion proved nothing.
- Type the cache factory as `ParseCache`; the `staleKeys` assertions were
  TS2339 and `?? false` read as a pass regardless.
- Register the store test in the cross-platform filesystem list.

Correct two comments that still described a quarantined chunk by the premise
this fix disproves.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* fix(review): stop swallowing the backup removal in replaceDurableChunkDir

Swallowing that `fs.rm` manufactured the very hazard this PR removes. When a
non-empty `${to}.replacing` survives, the following `fs.rename(to, backup)`
cannot overwrite it and is suppressed as "dest was missing", so `backedUp`
stays false and the `fs.cp(from, to)` fallback merges the staged generation
INTO the live directory — old shards alongside new, which the prune then
indexes as one valid survivor. Let it throw; the per-entry guard added to
`mergeStagedDurableParsedFileStore` already stops one such chunk from costing
the others their prune. The post-publish backup cleanup stays best-effort,
where an undeletable leftover really is litter.

Also:
- Make the sibling-isolation test perform the run its title claims. It asserted
  index membership and stopped; an index entry does not exercise the warm-hit
  path, so it would have passed even if the sibling re-dispatched. Each chunk
  now runs alone so the single spawn marker names which one re-parsed.
- Correct two comments that outran the implementation: retirement is gated on
  shards actually surviving, and an undeletable directory is dropped from the
  index rather than removed from disk.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-09-12 12:16:45 +01:00
azizur100389
3f5ca8cdb7
fix(storage): guard stale file-lock reclamation (#3234)
* fix(storage): guard stale file-lock reclamation

* fix(storage): close lock recovery failure paths

* Address PR review feedback (#3234)

- Flush the lock-child stderr diagnostic before process.exit
- Treat explicit NaN timeouts as the default ceiling
- Document non-retryable guard timeouts on the worker IPC contract

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): stop mislabeling live lock waits as orphan recovery

A brief peer inspect must not attach guardPath or send operators to
RUNBOOK delete steps. Refuse lock-free embeddings sync, stop --watch
only on a true guard timeout, and drop an unreadable self-created
guard before failing closed.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3234)

- Verify lock/guard absence before degrading a denied main-lock create
- Launch the third contender from unlinkSync, not the dead rename path
- Document group-lock timeouts for unrecoverable guard leftovers

Co-authored-by: Cursor <cursoragent@cursor.com>

* style: prettier index-lock reclaim guard tests

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(storage): treat O_EXCL as the lock-file presence check

CodeQL flagged existsSync-then-wx on analyze.lock. Create with wx first and
only reclaim unreadable leftovers after grace, so a successor is never
unlinked from a lost race.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-09-12 11:47:12 +01:00
Gergő Magyar
1f64becb30
fix(mcp): reject unknown tool arguments and honor depth (#3267) 2026-09-12 06:55:14 +00:00
Parafee41
68eca0ced8
fix: map deleted files to indexed symbol ranges (#3269)
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-12 06:14:13 +00:00
dependabot[bot]
75cc8dddbc
chore(deps)(deps): bump ignore from 7.0.8 to 7.0.9 in /gitnexus (#3265)
Bumps [ignore](https://github.com/kaelzhang/node-ignore) from 7.0.8 to 7.0.9.
- [Release notes](https://github.com/kaelzhang/node-ignore/releases)
- [Commits](https://github.com/kaelzhang/node-ignore/compare/7.0.8...7.0.9)

---
updated-dependencies:
- dependency-name: ignore
  dependency-version: 7.0.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-12 06:49:34 +01:00
Sumiteshwark
68c42009df
fix(dart): anchor @name so a constructor initializer stops minting a … (#3224)
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* fix(dart): anchor @name so a constructor initializer stops minting a phantom

    A Dart declaration whose value is a constructor call parses the callee as a
    SECOND (identifier) sibling of the declared name:

      final TextEditingController _title = TextEditingController();
      -> initialized_identifier[ identifier "_title",
                                 identifier "TextEditingController", selector ]

    The five graph-node rules that capture fields and top-level variables matched
    `(identifier) @name` without the first-child anchor, so @name bound to both
    siblings and the query minted a phantom Property/Variable named after the TYPE
    alongside the real declaration. On dart-flutter-conduit that produced a
    `Property TextEditingController` next to the genuine `_title` / `_body` in
    editor_screen.dart and login_screen.dart.

    static_final_declaration has the same shape, so class statics and top-level
    final/const were affected too, as were top-level `var`/`final` variables. All
    five rules now anchor @name with `.`, matching the mirror rules in
    languages/dart/query.ts which already anchored.

    Verified against the vendored grammar: the phantoms disappear and every real
    declaration is still captured (_title, _body, nullable field, static final,
    uninitialized field, top-level final, top-level var). End to end on
    dart-flutter-conduit: Property nodes 108 -> 106, type-shaped names 2 -> 0,
    real fields unchanged.

    The new test loads the grammar via createParserForLanguage rather than
    loadLanguage: loadLanguage resolves to void, so the surrounding
    `if (!(await loadDartOrSkip())) return;` idiom is always falsy and skips the
    body. Confirmed as a negative control -- reverting only the query change makes
    the new test fail on the exact phantom.

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3224)

Correct the RHS_ONLY_TYPES comments so they state the capture invariant
instead of claiming those names appear only as constructor callees.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3224)

Build the Dart query with Parser.Query and parser.getLanguage() so the
test no longer casts the tree (or Query/captures) through any.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
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2026-09-11 21:05:09 +01:00
Gergő Magyar
af2d9aec15
refactor(fts): share skip-FTS helpers and capability defaults (#3263)
* refactor(fts): share skip-FTS helpers and capability defaults

Keep analyze, repair, and HTTP open paths on one option/capability object so the same stamp cannot drift.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(lbug): keep initLbug options as skipFts-only

Restore the public initLbug and ensureFtsRowDmlSafe option shapes so one-arg callers stay on the pre-#3263 contract.

Co-authored-by: Cursor <cursoragent@cursor.com>

* revert(lbug): drop LbugInitOptions alias that tripped contract-drift

Keep the session option objects as inline types so initLbug's public signature matches main byte-for-byte.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-11 20:17:18 +01:00
azizur100389
f8036ac349
feat(analyze): add explicit FTS opt-out (#3205)
* feat(analyze): add explicit FTS opt-out

* chore(autofix): apply prettier + eslint fixes via /autofix command

* fix(analyze): treat flag and env FTS opt-out as one mode

Avoid a same-commit rebuild when only the skipReason discriminator
changes, and advertise disablement on dirty meta before leftover
indexes are wiped.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-11 14:05:28 +00:00
Aakash Sharma
d1a3edd333
perf(mcp): avoid O(n) git spawns on tools/list with many repos (#3259)
* perf(mcp): avoid O(n) git spawns on tools/list with many repos

toolSchemaRepoRequirements called listAllowedRepos -> listRepos -> checkStalenessAsync for every registered repo. With ~200 repos, this spawned 200 parallel git rev-list processes on every tools/list discovery call, causing a ~30s delay.

Replaced with a lightweight countRepos() method that reads the registry file once without spawning git processes, preserving full staleness checks for list_repos.

* Address PR review feedback (#3259)

Count the validated registry in countRepos so tools/list cannot advertise a multi-repo schema for ENOENT ghosts, and update the unrestricted listTools mocks to that contract.

Note: pre-existing failure in update-notice.test.ts (missing dist/cli/mcp.js) not addressed by this PR.
Co-authored-by: Cursor <cursoragent@cursor.com>

* Add a 200-repo tools/list bench for the countRepos path (#3259)

Pin the #1363 comparison (listRepos git fan-out vs validated countRepos / listTools) in-tree so the latency claim can be re-run. Also drop the change-history comments on the unrestricted schema arm.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Gate the tools/list bench with baselines and CI --check (#3259)

Exact registry/schema floors plus ratio timing, no millisecond ceiling, so restoring listRepos() on tools/list fails CI.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Address PR review feedback (#3259)

Align unrestricted tools/list schema flags with the refreshed registry snapshot, and make the bench reject a non-positive BENCH_REPS and isolate fixtures by N.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

* Address PR review feedback (#3259)

Isolate the tools/list bench from GITNEXUS_MCP_READ_ONLY and create the default fixture under mkdtempSync so CodeQL is not looking at a predictable /tmp path.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2026-09-11 13:18:28 +01:00
Gergő Magyar
7bbaf6b73b
fix(review): fail closed on foreign embedding identity and vector-width drift (#3260)
Applied from a ce-code-review pass over this branch (run 20260911-053832-b49f88d6).

- `embeddings sync` now gates EVERY checkpoint kind on embedding identity.
  `unverified-count` was exempted, but `decideEmbeddingResume` abandons that
  kind before it compares identity, so the exemption was the only thing
  keeping a foreign model from filling holes beside the old model's vectors —
  two vector spaces in one CodeEmbedding table, reported healthy. The test
  that asserted this run succeeds now asserts the refusal.

- `embeddings sync` refuses when the index's recorded vector width differs
  from this run's. The column is FLOAT[N] fixed at build time and the pipeline
  deletes each batch's stale rows immediately before inserting, so a width
  change deleted rows it could not re-insert. `analyze` already forces a
  rebuild on the same mismatch; only a rebuild can retype the column.

- `GITNEXUS_EMBEDDING_RETRY_TIMEOUTS` parses with the repo's truthy convention
  (`1`/`true`/`yes`). The integer parser threw on `true`, so the conventional
  spelling hard-failed every embedding call rather than enabling the flag or
  leaving it off. README names the accepted spellings.

- One `persistMeta` write path replaces three inlined metadata
  read-modify-writes; #2790 traced two production drifts to hand-copied
  writers of these exact fields.

- Tests: the pipeline mock now invokes `onCheckpointWindowStart`/`onCheckpoint`,
  so the resume contract actually executes under test. Added coverage for the
  incomplete-index refusal, the partial-checkpoint branch, and the body-read
  timeout retry site that the existing opt-in test never reached.

Verified: tsc --noEmit clean; 99 tests pass across the three affected suites;
prettier clean.

Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-09-11 07:37:08 +00:00
Ankit Verma
8bd71c8335
feat(staleness): report diverged and unknown index state instead of fresh (#3257)
* feat(staleness): report diverged and unknown index state instead of fresh

A staleness check collapsed every git failure into { isStale: false,
commitsBehind: 0 }. On a branch-pinned serve clone, a failed re-index
leaves the recorded commit orphaned by the --depth 1 fetch; once the
reflog expires and gc prunes it, rev-list fails and the index silently
reads as fresh while still behind.

checkStaleness / checkStalenessAsync now return an additive status:
current, behind, diverged (rev-list failed but HEAD resolved and differs
from lastCommit) or unknown (HEAD unresolvable, no lastCommit, timeout).
isStale and commitsBehind keep their values in every case.

One payload builder (core/staleness-status.ts) feeds MCP list_repos, the
hot read tools and /api/repos + /api/repo. diverged carries a hint and no
invented count; unknown appears on listings only. The helpers live in a
pure module so existing vi.mock stubs of git-staleness stay valid.

gitnexus group status no longer prints "-1 commits behind".

Fixes #3256

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* Address PR review feedback (#3257)

- Document the `current` arm `fromHead` can return after a failed `rev-list`.
  The `staleness-status.ts` status list, the `fromHead` docstring and the
  `stalenessForTool` comment each named only `diverged`/`unknown`, so all three
  described a contract the helpers do not have.
- Document both `unknown` rows on the group status type: no recorded commit
  (`indexStale: true`, `commitsBehind: -1`) and a git probe that could not
  answer (`indexStale: false`, `commitsBehind: 0`), which do not agree on
  either field.
- Update both shipped `gitnexus-guide` copies to the new wire shape
  (`{ status, commitsBehind?, hint? }`), add a `diverged` example carrying no
  count, and state `unknown` is reported only by the `list_repos` listing.
  Presence now means "not `current`", not "behind N". Pinned in
  shipped-skills-sync.
- Lock the timed-out `rev-list` short-circuit with staleness-timeout.test.ts:
  it asserts `unknown` from exactly one git spawn, so removing the `killed`
  guard (which would probe HEAD again and double the #3232 bound) now fails.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* Claim only the uncountable gap in the diverged hint (#3257)

`fromHead` reaches the `diverged` branch on any non-timeout `rev-list` failure
where `rev-parse HEAD` resolves to a different SHA. It compares the two SHAs and
runs no reachability check, so a transient object-read failure lands there while
`lastCommit` is still an ancestor of HEAD — and the hint told the operator the
commit was gone from history. `staleness-status.ts` already documents `diverged`
as only "provably not at HEAD; the count is unknown", so the string was also the
one place contradicting its own contract.

The hint now states what the check established and hedges the usual cause:
"Index is not at HEAD and the commit gap could not be counted — the recorded
commit may no longer be in this clone's history."

Updated with it: the `staleness.test.ts` diverged assertion, and the `diverged`
example plus its lead-in sentence in both shipped `gitnexus-guide` copies (still
byte-identical). `mcp/resources.ts` needs no change — it interpolates
`staleness.hint`, holding no copy of the text.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

* test(staleness): cover the remaining #3256 review test gaps

The tri-review's lower-priority gaps, each now locked:

- staleness-fallback.test.ts: after a failed (not timed-out) rev-list,
  both helpers report `current` when HEAD alone still resolves to the
  indexed commit, `diverged` when it resolves elsewhere, and `unknown`
  when it cannot be read, each from exactly rev-list + rev-parse. This
  complements staleness-timeout.test.ts: a timeout spawns once, any other
  failure probes HEAD.
- list_repos carries the listing-only `unknown` and a count-free
  `diverged`; `current` carries nothing.
- group status: a resolvable repo with no recorded commit composes to
  indexStale: true, commitsBehind: -1, status: unknown and renders as
  "STALE (? commits behind)", through the real groupStatus path rather
  than a hand-built row.

Each test was checked against a mutation of the code it guards (the
fromHead current arm, the group no-commit literal, list_repos
includeUnknown); every mutation fails its test.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: tech-admin3 <tech-admin@kodnest.com>
Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
2026-09-11 08:07:37 +01:00
Parafee41
c9b391357e
fix(group): detect function-local Python imports (#3254)
* fix(group): detect function-local Python imports

* fix(group): parse Python imports structurally

* fix(group): use safe Python parser wrapper

* fix(group): isolate Python parse timeouts

* fix(group): skip recovered indented Python from-imports

Error-recovered trees can promote unclosed-docstring lookalikes into
real import_from_statement nodes. Drop those indented imports, bound
file reads, log parse timeouts, and add fingerprint floors for the
tree-sitter scan.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-09-11 06:23:52 +00:00
panbergco
32a5fc3c4f
feat: Make long HTTP embedding jobs resumable (#3065)
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* Make long HTTP embedding jobs resumable

Retry endpoint timeouts when explicitly configured, creating a fresh abort signal for every attempt. Add gitnexus embeddings to fill an existing index in place: every successful batch is durable, and rerunning skips vectors whose content hash still matches instead of rebuilding the structural graph.

* Address PR review feedback (#3065)

Hold the per-index lock around embeddings sync, fail closed on a foreign-identity partial checkpoint, and refuse to create an empty DB from leftover metadata. Use the canonical embedding count, keep closeLbug from masking the real error, load hashes instead of full vectors, and document GITNEXUS_EMBEDDING_RETRY_TIMEOUTS.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Split embeddings sync off the install module so install no longer loads Ladybug.

Share the opt-in TimeoutError wrap between fetch-throw and .json(), and cover a non-file LadybugDB path.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Describe embeddings sync checkpoints as periodic and report cached node count.

Pipeline checkpoints every 5,000 nodes, and fetchExistingEmbeddingHashes is keyed by nodeId, not vector rows.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Leave an unverified-count checkpoint when embeddings sync cannot count rows.

A finished run must not keep an interrupted window marker; the next sync should re-derive the count instead of hitting the identity gate.

Co-authored-by: Cursor <cursoragent@cursor.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: panbergco <panbergco@users.noreply.github.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
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2026-09-10 19:48:50 +01:00
auyua9
a4769439dd
fix(parse): retain metadata-only diff files (#3251)
* fix(parse): retain metadata-only diff files

* Address PR review feedback (#3251)

Keep detect_changes honest on C-quoted, TAB-terminated, and ambiguous
diff --git dests, and fail closed when a header cannot be parsed.

Co-authored-by: Cursor <cursoragent@cursor.com>

* Simplify parseDiffHunks dest-prefix helper (#3251)

Drop the unused a/ prefix arm and the redundant empty-parse unparsed-header check.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(parse): ignore +++ inside hunks and accept mixed-quoted git headers

Stop treating hunk-body lines as file headers, and parse independently
C-quoted src/dest tokens on diff --git.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: ming <silverchris@foxmail.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-10 18:27:00 +01:00
Yahoo
0edf9ce0ff
fix(ruby): guard gem requires with dependency metadata (#3096)
* docs(plans): add ruby gem require boundary plan

* fix(ruby): guard gem requires with dependency metadata

* fix(ruby): scope gem sources by manifest

* test(ruby): model resolved lockfile specs

* fix(ruby): stop local gem suffix fallthrough

* docs: remove Ruby resolution plan

* test(ruby): gate gem resolution correctness and scaling

* test(ruby): align gem benchmark baseline with ratio gates

* Address PR review feedback (#3096)

- Strip a trailing .rb so local and external gem prefix matching follows Ruby's optional-suffix require.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
2026-09-10 16:04:11 +01:00
JaysonAlbert
e7141ab0c1
fix(schema): persist Spring constructor-to-bean injection edges (#3239)
Co-authored-by: Jayson Albert <momeijw@gamil.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-09-10 16:03:53 +01:00