* feat(git): add getCurrentBranch + resolveRefToCommit helpers (#2106)
* feat(storage): branch-scoped getStoragePaths + branchSlug + resolveBranchPlacement (#2106)
* feat(analyze): branch-aware indexing — per-branch slot, no overwrite (#2106)
* feat(registry): nest non-primary branches under one path entry (#2106)
* feat(mcp): optional branch scope on query tools + list_repos branches (#2106)
* feat(cli): --branch on analyze + query/context/impact/cypher/detect-changes (#2106)
* feat(cli): branch-aware list/status + per-branch staleness meta (#2106)
* fix(review): apply autofix feedback
- guard analyze against --branch != checked-out branch (prevents writing one
branch's working tree into another branch's index slot)
- fix branch-handle pool reinit thrash (track observed indexedAt by lbugPath,
since applyBranchScope returns fresh handles)
- remove dead resolveRefToCommit helper (staleness uses HEAD vs branch meta)
- RepoListing.branches -> Omit<BranchSummary,'stats'> for type cohesion
- add tests: branchSlug traversal containment, --branch mismatch reject,
callTool branch threading, legacy-entry branch routing, status detached/stale
* fix(review): address tri-review findings (#2106)
- P1 data-loss: a detached-HEAD re-analyze (CI's actions/checkout default) no
longer strips the primary's meta.branch stamp; preserve it so a later branch
analyze cannot claim & overwrite the flat/primary index. +cascade integration test
- P2: capture validateBranchName's trimmed return for --branch so a
whitespace-padded value no longer false-rejects on-branch or ghosts an index
- F1: on a lost/rebuilt registry, a branch run reconstructs the primary
top-level entry from the flat meta, not the feature branch's meta
* fix(storage): only trust a non-empty-string flatMeta.branch (#2106 R5)
* fix(analyze): warn when the default branch is not the primary index (#2106 R8)
* fix(mcp): resolve --branch <primary> on a legacy unstamped flat index (#2106 R4)
* feat(cli): gitnexus clean --branch to remove a single branch index (#2106 R7)
* fix(mcp): evict orphaned branch pools on unregister/clean (#2106 R3)
* fix(analyze): union per-branch cache keys so a branch switch keeps shards (#2106 R6)
* fix(analyze): normalize the auto-detected branch label via sanitizeDetectedBranch (#2106 R1)
* fix(cli): skip AGENTS.md base_ref refresh for a non-primary branch fast path (#2106 R2)
* fix(storage): atomic writeRegistry + re-read-before-write to narrow the registry race (#2106 R9)
* refactor(storage): extract branch primitives to branch-index.ts (#2106 R10)
* feat: configure prettier with pre-commit hook integration
Add prettier, lint-staged, and prettier-plugin-tailwindcss at the repo
root with husky pre-commit hook integration. Moves husky from
gitnexus/ to root package.json for reliable hook installation.
- Root package.json with prepare/format/format:check scripts
- .prettierrc with endOfLine:lf and tailwindStylesheet for TW v4
- .prettierignore excluding fixtures, vendor, generated, *.d.ts, *.md
- .gitattributes enforcing LF line endings for Windows consistency
- Pre-commit hook uses direct node_modules/.bin/ paths (no npx)
* style: apply prettier formatting to entire codebase
One-time bulk format. No logic changes.
Use .git-blame-ignore-revs to skip this commit in git blame.
* chore: add .git-blame-ignore-revs for prettier format commit
* perf: pre-commit hook runs only tests related to staged files
Use vitest --related to scope test execution to tests that import
the changed files, instead of running the full suite on every commit.
* perf: remove vitest from pre-commit hook, keep in CI only
Pre-commit now runs lint-staged + tsc only. Tests run in CI
(ci-tests.yml) where they belong — keeps commits fast.
* ci: add prettier format check to quality workflow
PRs will now fail if code isn't formatted with prettier.
