Commit graph

1022 commits

Author SHA1 Message Date
dependabot[bot]
720c1539d3 chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#2532)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 8.0.0 to 8.0.4.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.4/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-version: 8.0.4
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-17 13:24:01 +01:00
dependabot[bot]
edfc294fa7 chore(deps)(deps-dev): bump @babel/types in /gitnexus (#2534)
Bumps [@babel/types](https://github.com/babel/babel/tree/HEAD/packages/babel-types) from 8.0.0 to 8.0.4.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.4/packages/babel-types)

---
updated-dependencies:
- dependency-name: "@babel/types"
  dependency-version: 8.0.4
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-17 13:23:47 +01:00
dependabot[bot]
a0e59237bc chore(deps)(deps-dev): bump @babel/types in /gitnexus (#2518) 2026-07-17 05:26:54 +01:00
dependabot[bot]
7e3e228b8e chore(deps)(deps-dev): bump @babel/generator in /gitnexus (#2519) 2026-07-17 04:42:39 +01:00
dependabot[bot]
d1cd0ebdde chore(deps)(deps-dev): bump @babel/traverse in /gitnexus (#2520)
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.29.7 to 8.0.0.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.0/packages/babel-traverse)

---
updated-dependencies:
- dependency-name: "@babel/traverse"
  dependency-version: 8.0.0
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-16 22:51:51 +01:00
dependabot[bot]
d1b46a756a chore(deps)(deps-dev): bump tsx from 4.23.0 to 4.23.1 in /gitnexus (#2517)
Bumps [tsx](https://github.com/privatenumber/tsx) from 4.23.0 to 4.23.1.
- [Release notes](https://github.com/privatenumber/tsx/releases)
- [Changelog](https://github.com/privatenumber/tsx/blob/master/release.config.cjs)
- [Commits](https://github.com/privatenumber/tsx/compare/v4.23.0...v4.23.1)

---
updated-dependencies:
- dependency-name: tsx
  dependency-version: 4.23.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-16 21:54:48 +01:00
dependabot[bot]
839300852a chore(deps)(deps-dev): bump @babel/parser in /gitnexus (#2521)
Bumps [@babel/parser](https://github.com/babel/babel/tree/HEAD/packages/babel-parser) from 7.29.7 to 8.0.0.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v8.0.0/packages/babel-parser)

---
updated-dependencies:
- dependency-name: "@babel/parser"
  dependency-version: 8.0.0
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-16 21:51:25 +01:00
Parafee41
98422b61c2 test(cli): lock native load guard for lazy actions (#2442) 2026-07-16 15:22:20 +01:00
Parafee41
acc0e0e9b3 fix(embeddings): make batch inserts retry-safe (#2453)
* fix(embeddings): make batch inserts retry-safe

* fix(types): cover optional transformers dependency

* Fix embedding restore test expectation

* test(embeddings): count checkpoint creates

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-07-16 15:21:03 +01:00
Parafee41
7d5c24dc36 fix(mcp): avoid api impact schema combinators (#2489)
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-07-16 15:20:22 +01:00
azizur100389
3b4de4e5f3 feat(wiki): allow explicit HTTP LLM hosts (#2491)
* feat(wiki): allow explicit HTTP LLM hosts

Keep wiki LLM HTTP endpoints fail-closed by default while adding a narrow exact-host opt-in for LAN/self-hosted models.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(wiki): simplify insecure LLM flag name

Rename the wiki HTTP opt-in flag to --allow-insecure-connection per review feedback.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(wiki): simplify insecure connection env

Rename the wiki HTTP allowlist environment variable and align validation errors with the CLI flag naming.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-07-16 13:53:58 +01:00
azizur100389
4968604270 feat(taint): expand TS/JS sink model (#2490)
* feat(taint): expand TS/JS sink model

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(taint): cover TS sink disambiguation end-to-end

Add a real-pipeline integration test proving the expanded TS/JS taint sinks only emit findings for intended imported and receiver-conventional symbols.

Co-authored-by: Cursor <cursoragent@cursor.com>

---------

Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-07-16 13:11:57 +01:00
Gergo Magyar
4eda955c96 ci(tests): widen the Windows shard watchdog and keep exit diagnostics (#2449)
The busiest Windows platform shard reached 14m57s against the 15 minute
watchdog on the rc.19 green run and has timed out once since. CI now
sets GITNEXUS_CROSS_PLATFORM_TIMEOUT_MINUTES=20 (the job timeout stays
25), the stale comfortably-under comment reflects reality, and the
runner always logs status, signal, spawn code and elapsed time so the
next status-null death is diagnosable.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 12:29:01 +01:00
Gergo Magyar
9f72d13ebc ci(release): sync plugin manifests on every version bump (#2445)
The RC path bumped only gitnexus/package.json, so every v1.6.10-rc tag
through rc.28 shipped the four plugin manifest surfaces frozen at 1.6.9
and failed its own unit suite. The npm version lifecycle script now
runs a fail-closed sync whenever npm version executes, in CI or on a
maintainer's laptop; publish.yml verifies the result and stages the
surfaces into the detached release commit, and the stable path refuses
to publish a tag whose manifests drifted. The sync is textual so a
release commit carries a one-line change per surface instead of
reformatting churn.

Design follows the proposal by @100yenadmin in #2445, moved onto the
standard npm version hook.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 12:29:01 +01:00
Eva
e2caf23d4a test(embeddings): cover File-row deletion 2026-07-16 17:51:46 +07:00
Gergo Magyar
41a9a50aac test(cli): pin the non-zero exit for not-found context payloads
The skip-git ignore test asserted the error payload while relying on
exit 0; since the output() guard an error payload also exits 1, so the
test now captures the payload from the exec failure and pins both.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 10:11:32 +00:00
Gergo Magyar
691c6bdaa9 fix(embeddings): make HTTP generation resumable (#2468) 2026-07-16 10:00:50 +00:00
Gergo Magyar
d024a65a66 fix(embeddings): include File rows in the incremental delete sweeps
The zero-symbol File fallback from #2455 writes File embedding rows,
but the filePath-scoped delete sweeps joined through EMBEDDABLE_LABELS
only. Docs repos accumulated duplicate rows on re-analyze and deleted
files left orphans. Free for code repos: no File rows exist to match.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 10:00:26 +00:00
Gergo Magyar
a9d7375d5d fix(embeddings): fall back to text-bearing file nodes (#2455) 2026-07-16 09:58:38 +00:00
Gergo Magyar
ac6dc5b446 fix(cli): fail every tool command loudly on backend error payloads
Moves the #2469 guard from cypherCommand into output() so all seven
tool commands that print backend results share the exit semantics.
Adds query and context regression cases.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 09:58:14 +00:00
Gergo Magyar
39cfe8a843 fix(cli): fail cypher errors loudly (#2470) 2026-07-16 09:56:09 +00:00
Gergo Magyar
339da8c672 fix(cache): degrade when the durable generation reset fails
An fs failure while resetting a chunk generation now warns and
continues like the neighboring durable-store paths instead of failing
the analyze. Workers recreate the directory on write.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 09:55:44 +00:00
Gergo Magyar
d59fdc5890 fix(cache): bound parsedfile generations (#2476) 2026-07-16 09:51:46 +00:00
Gergo Magyar
e3487af289 feat(mcp): add deterministic response budgets (#2460)
Composed with the read-only and repository policies in the CallTool
handler: read-only assert, then budget resolution, then scoped dispatch
with the transport arg stripped.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:59:05 +00:00
Gergo Magyar
23169f23d5 feat(mcp): normalize impact and context parameter aliases (#2462) 2026-07-16 08:55:49 +00:00
Gergo Magyar
af583a9be1 fix(scope): stabilize graph lookup collisions (#2480) 2026-07-16 08:55:23 +00:00
Gergo Magyar
08a54c7c34 test(communities): rebaseline pipeline-pdg goldens for projection order
The C#, Java and Go flag-off digests shift with the canonical community
projection from #2478 stacked on the walker sort from #2482. Regenerated
via vitest -u; mini-repo pipeline golden was already correct.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:55:09 +00:00
Gergo Magyar
22e48c9d0c fix(communities): canonicalize projection order (#2478) 2026-07-16 08:50:51 +00:00
Gergo Magyar
d00f70695e feat(mcp): enforce repository allowlist and default (#2465)
Merged with the read-only policy: both filters compose in server.ts.
Review hardening: assertResourceUri compares the opaque host case
insensitively (GITNEXUS://GROUP bypass) and gains the fail-closed
fallback for unparseable URIs; the backend proxy now also intercepts
queryClusters/queryProcesses/queryClusterDetail/queryProcessDetail;
scrubGroupDescription is shared from read-only-policy.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:50:07 +00:00
Gergo Magyar
688bdcb838 fix(mcp): reject group-only args at read-only dispatch
crossDepth and subgroup are inert outside @group routing, but rejecting
them keeps the scrubbed schema and the dispatch contract in agreement.
Also documents that resource content scrubbing is cosmetic.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:43:30 +00:00
Gergo Magyar
bfc86f3209 feat(mcp): add fail-closed read-only mode (#2464) 2026-07-16 08:42:32 +00:00
Gergo Magyar
dcfd3e7001 fix(scan): lock in Rust publish order and guard PHP suffix roots
Adds the missing #2481 Rust regression test (importer before definer),
fails closed when a PHP namespace suffix matches directories under
different roots, and points the baselines note at #2481/#2482.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:42:07 +00:00
Gergo Magyar
02f1250385 fix(scan): canonicalize traversal without order-sensitive bindings (#2482) 2026-07-16 08:31:46 +00:00
Gergo Magyar
17c5d6f81a feat(eval): require bearer auth for remote binding (#2458)
Non-loopback eval-server binds now require GITNEXUS_AUTH_TOKEN with an
exact Bearer header compared in constant time. Review fixes: loopback
binds defer unreadable env file errors to a warning, and help text
notes IPv4 hostname resolution.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:28:30 +00:00
Gergo Magyar
f13a8e6cef fix(eval): defer env file read errors to binds that need a token
Loopback binds now warn and start when .env or .env.local exists but
cannot be read; non-loopback binds keep the fail-closed error. Help
text notes that hostnames resolve to IPv4.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-16 08:25:52 +00:00
Copilot
fe7608988f fix(mcp): context resource reads stale lastCommit/stats after out-of-process analyze (#2438) (#2439)
* Initial plan

* fix(mcp): read fresh metadata from disk in context resource to fix stale staleness banner and stats (#2438)

The context resource (gitnexus://repo/{name}/context) was serving stale
lastCommit and stats after an out-of-process `analyze --index-only` refresh.
The LocalBackend's in-memory RepoHandle is cached and only refreshes on
registry misses — never on a disk update from an external process.

Fix: read fresh metadata via loadMeta(repo.storagePath) on every context
resource read, mirroring the ensureInitialized hot-swap pattern. Use the
fresh lastCommit for the staleness check and fresh stats for the stats
block; fall back to cached values when the disk read fails.

Tests:
- 5 new unit tests in resources.test.ts covering fresh meta, fallback behavior
- 3 new integration tests in context-resource-staleness.test.ts covering
  the exact reproduce sequence from the issue report

* fix(test): use @ladybugdb/core mock to prevent native addon load in integration test

The context-resource-staleness integration test used importOriginal() in
the vi.mock factories for pool-adapter.js and mcp/core/lbug-adapter.js.
That caused the real pool-adapter.ts to load @ladybugdb/core, which
tries to dlopen lbugjs.node — a native addon that requires postinstall
(not run with --ignore-scripts in CI).

Fix:
- Add a vi.mock('@ladybugdb/core') at the package boundary, matching the
  pattern in lbug-pool-fts-load.test.ts and pool-wal-recovery.test.ts.
- Replace the two importOriginal()-based lbug mocks with direct factories
  that provide all necessary exports (initLbug, executeQuery,
  executeParameterized, closeLbug, isLbugReady) without loading the real
  module.

All 3 integration tests now pass in CI (no lbugjs.node required).

* test(integration): run context staleness flow end-to-end without mocks

* Address PR review feedback (#2439)

- Restore libc selectors for optional native packages

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-07-16 09:20:18 +01:00
Eva
d164bfd685 test(communities): rebaseline canonical projection 2026-07-16 10:19:12 +07:00
Eva
aad1349001 fix(mcp): ignore undefined alias inputs 2026-07-16 10:07:06 +07:00
Eva
3eccbcaf56 fix(php): index import declaration directories 2026-07-16 09:58:33 +07:00
Eva
0435d224ed Merge remote-tracking branch 'upstream/main' into review/pr-2482 2026-07-16 09:54:37 +07:00
Eva
a64a5e4d17 Merge remote-tracking branch 'upstream/main' into upstream/community-order-2477 2026-07-16 09:51:57 +07:00
Eva
d9073190db Merge remote-tracking branch 'upstream/main' into upstream/parsedfile-generation-2475 2026-07-16 09:50:36 +07:00
Eva
65955b66f9 Merge remote-tracking branch 'upstream/main' into upstream/cypher-error-exit-2469 2026-07-16 09:49:16 +07:00
Eva
93dc80b3bf fix(embeddings): bind resume checkpoints to provider 2026-07-16 09:48:03 +07:00
Eva
9952d5d89c Merge remote-tracking branch 'upstream/main' into upstream/embedding-http-resilience 2026-07-16 09:44:17 +07:00
Eva
b1b32fb6dc Merge remote-tracking branch 'upstream/main' into upstream/file-node-embedding-fallback 2026-07-16 09:40:29 +07:00
Eva
c54f97aa20 fix(mcp): validate repository policy before embedded serving 2026-07-16 09:39:06 +07:00
Eva
7d992232bf Merge remote-tracking branch 'upstream/main' into upstream/mcp-repository-policy 2026-07-16 09:36:31 +07:00
Eva
f14a491737 fix(mcp): close read-only resource routing bypass 2026-07-16 09:34:34 +07:00
Eva
d1bac2d936 Merge remote-tracking branch 'upstream/main' into upstream/mcp-read-only-policy 2026-07-16 09:30:59 +07:00