9 commits

Author	SHA1	Message	Date
Parafee41	47c2799ba7	fix(analyze): add cold parser rebuild option (#3153)	2026-09-04 05:14:00 +01:00
Gergő Magyar	72edf40087	perf(store): V8 sidecars plus hardlinked ParsedFile restore (#3099) ... * perf(store): add best-effort V8 sidecars beside canonical JSON caches Warm ParsedFile and parse-cache loads skip JSON.parse when a sidecar is present. JSON remains authoritative: envelope validation plus v8.deserialize decide the hit, and any failure falls back without reparsing. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): require generation bind or sidecar drop before cache overwrite A same-length JSON rewrite could accept a leftover V8 sidecar if both generation rotation and unlink failed. Refuse the new generation unless at least one of those invalidations succeeds; skip publishing a sidecar when only the drop succeeded. detect_changes --scope all: 7 files, risk low, no affected processes. tsc --noEmit clean; 115/115 relevant unit tests; cache-related integration tests pass. parse-impl-env-reads worker-ready timeout is pre-existing (same 5 failures with this change set stashed). ESLint 0 errors; remaining warnings are pre-existing and not on changed lines. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * refactor(store): share V8 overwrite invalidation across persist paths The bind-or-drop gate lived in five writers. One helper keeps the protocol in a single place and lets bind/drop run together on the async path. detect_changes --scope all: 3 files, risk low, no affected processes. Co-authored-by: Cursor <cursoragent@cursor.com> * perf(store): hardlink durable ParsedFile shards into the run store Warm restore of parsedfile-cache into parsedfile-store now publishes all four shard files via fs.link, falling back to copy-into-tmp + rename so a leftover dest hardlink can never be written through. JSON remains the canonical cache; V8 sidecars ride the same path. Co-authored-by: Cursor <cursoragent@cursor.com> * perf(store): load immutable V8 shards in place, drop JSON fallback Warm analyze was still paying JSON.parse plus a restore copy. One .v8 envelope per shard and SCHEMA_BUMP 81 make a miss re-extract instead of serving a stale JSON twin. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): validate durable V8 warm-cache restores Reject incomplete or corrupt durable generations and snapshot valid shards before skipping parse workers, preserving ParsedFiles when persistence fails. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(store): drop unused durable load path Load ParsedFiles only from the run-store snapshot and share one checksummed payload reader so inspect and deserialize stay consistent. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>	2026-08-30 20:50:20 +00:00
Gergő Magyar	9718e1247a	fix(parse): stabilize parse-cache chunks and cheapen ParsedFile loads (#3093) ... * fix(parse): stabilize parse-cache chunks and cheapen ParsedFile loads Hash-bucket membership so worker count and add/delete no longer reshuffle cache keys; GC and path sidecars keep small-shard scope-resolution from full-store JSON and empty GCs. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): apply review findings Drop the unused pool argument from cache-budget resolution, reuse path compare helpers, and copy durable sidecars via full shard paths. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): copy durable path sidecars via full shard paths Keep restore destinations relative to the run store even when sidecar names are derived from absolute json paths. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): fail closed on truncated ParsedFile path sidecars Skip JSON only when a sidecar is complete (NUL-free, trailing newline). Truncated listings without a NUL were able to omit wanted paths. Co-authored-by: Cursor <cursoragent@cursor.com> * style: apply prettier to ParsedFile store and tests Match the PR autofix formatter so CI quality does not flag wrap-only diffs. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): tighten ParsedFile path sidecars from review Skip sidecar writes when a path contains CR/LF, and assert the skip path does not open non-intersecting JSON shards. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): yield on sidecar skips and assert restore copies listing bytes Skipped shards now count toward the 128-shard event-loop yield, and restore tests check sidecar contents rather than existence only. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): treat path sidecars as best-effort after a JSON shard write A sidecar ENOSPC/EACCES must not fail persist; load already falls back to the JSON shard when the listing is missing. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): drop stale path sidecars when a shard is no longer listing-safe Rewriting a shard with a newline-bearing path must unlink the old listing so load does not skip the JSON payload. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(parse): keep worker-integration tests aligned with hash buckets Quarantine cache-skip asserts the poison pack hash, clone-skip keeps poison and survivors in one bucket, and restore unlinks a stale dest sidecar when the durable source has none. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(parse): address review follow-ups for cache packs and sidecars Record SCHEMA_BUMP 80, pin pack locality and sidecar load/restore tests, and keep sidecar I/O best-effort with shared ENOENT handling. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): drop stale path sidecars after a failed listing write A leftover .paths file after ENOSPC (or similar) made load skip the new JSON shard. Hash expected packs with the same env budget production uses. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(store): drop path sidecars before overwriting parsed-file JSON Load trusts a leftover .paths listing, so rewriting a shard must unlink that listing first. Otherwise an interrupted sidecar refresh can hide newly written files. Co-authored-by: Cursor <cursoragent@cursor.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * fix(store): fail closed on truncated or CR path sidecars Count-prefix listings so a newline-terminated partial sidecar cannot skip the JSON shard, and reject CR instead of stripping it. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): expect single-file watch refresh telemetry The production analyze --watch e2e was still pinned to the old pack-cascade "8 re-parsed" line, so shard 1/3 timed out after a correct 1-file refresh. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): expect one reparsed file on a non-bean incremental touch Pack-cascade leftover: the drift-skip test still required 7 reparsed files after logger.ts-only edits. Cheap ParsedFile loads now reparse just that file. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>	2026-08-30 08:31:47 +00:00
azizur100389	cdc98a9cf8	fix(java): capture enum interface heritage (#2935) ... * fix(java): capture enum interface heritage * fix(java): harden enum heritage dispatch * test(java): refresh synthetic capture baselines --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>	2026-08-13 07:04:00 +01:00
Gergő Magyar	911151e230	fix(resolution): resolve Go pointer-receiver calls, and report the program boundary instead of hedging (#2766) (#2782)	2026-08-01 22:42:18 +01:00
Gergő Magyar	27ab37c432	feat(resolution): type receiver chains from AST structure across all 14 languages (#2708) + epistemic lower-bound (#2744) (#2747)	2026-07-31 07:12:57 +01:00
FAll	2cfbc4a259	feat(spring): build bean candidate inventory (#2494) ... * feat(java): inventory Spring bean candidates * fix(java): fail closed on Spring annotation shadowing * fix(java): resolve Spring beans after imports * fix(java): remove stale bean extraction path * style: satisfy locked Prettier version * fix(spring): address PR review findings * feat(spring): share bean inventory across Java and Kotlin * fix(spring): gate bean inventory analysis completeness * fix(kotlin): avoid reloading cached scope source * chore(autofix): apply prettier + eslint fixes via /autofix command --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>	2026-07-20 09:28:23 +01:00
Gergő Magyar	ed8ab1c246	fix(scope-resolution): resolve callable reference flows (#2437) (#2522) ... * docs(plans): add provider-hook value-refs plan (#2437) Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(plans): deepen #2437 plan to USES + property-dispatch design Design revised after prior-art research (Kythe ref vs ref/call, Joern METHOD_REF, Feldthaus field-based call graphs, CodeQL impliedReceiverStep): registration sites emit reference-class USES, invocation is recovered by a field-based property-dispatch pass synthesizing CALLS at member-call sites. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(scope-resolution): model provider-hook value references (#2437) Functions referenced as object-literal property values (provider hooks like emitScopeCaptures: emitCppScopeCaptures) previously produced no edge at all, so impact/context reported a false-safe 0 upstream dependents. Two coordinated halves, per prior art (Kythe ref vs ref/call, Joern METHOD_REF, Feldthaus ICSE'13 field-based call graphs, CodeQL impliedReceiverStep): - Registration -> USES: new ReferenceKind 'value-ref'; TS/JS queries capture pair values and shorthand properties (with @reference.property-key); emitted as a reference-class USES edge, reason 'scope-resolution: value-ref'. Resolution is callable-gated so plain values emit nothing. - Dispatch -> CALLS: new shared pass emitPropertyDispatchCalls synthesizes CALLS (reason 'property-dispatch', confidence 0.7, per-key fan-out cap 32 calibrated on this repo's 16-provider hook tables) from member-call sites to every function registered under the same property key. Deviation from plan: the pass owns value-ref resolution entirely via the post-finalize findCallableBindingInScope walker — the shared registries only see pre-finalize local bindings, so imported hooks (the c-cpp.ts case) were unresolvable through lookupForSite; Reference.propertyKey passthrough dropped as unnecessary. SCHEMA_BUMP 13 -> 14: ParsedFile gains value-ref sites + propertyKey. Verified end-to-end: impact(emitCppScopeCaptures, upstream) now reports 8 impacted / HIGH with extractParsedFile (true dispatch caller) at d=1 via property-dispatch and the c-cpp.ts registration via USES. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(scope-resolution): cover value-ref registration and property dispatch (#2437) Integration: same-file/cross-file/aliased/shorthand registrations emit USES; non-callable and destructuring values emit nothing; dispatch sites gain property-dispatch CALLS (incl. JS twins and per-language partitioning); fan-out-capped keys are dropped entirely; factory-call values unchanged. Unit: capture-shape pins for @reference.value-ref + @reference.property-key. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(scope-resolution): surface dropped property-dispatch keys in stats (#2437) Review finding: skippedKeys was returned but discarded — a hook table larger than the fan-out cap silently reopened the #2437 gap for those keys. Log dropped keys and fold value-ref USES + dispatch CALLS into referenceEdgesEmitted. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(plans): add callable reference-flow implementation plan * fix(scope-resolution): close property-dispatch review gaps * feat(scope-resolution): add callable flow facts * feat(scope-resolution): resolve callable value flow * feat(scope-resolution): resolve callable references across providers * fix: harden callable reference flow resolution * fix(scope-resolution): preserve callable binding semantics * docs(plans): add pr-2522-review-fixes plan Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(storage): bump INCREMENTAL_SCHEMA_VERSION for callable-value-flow edges Callable-value-flow CALLS/USES edges (#2437) can connect two files whose content did not change, but the incremental write set only covers changed files — a top-up against a pre-v7 index would silently omit the new edges for every unchanged file pair, indefinitely. Force the one-time full re-analyze (review finding 1, #2522). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(storage): sanitize callable-flow sites per-site at load, log drops The load-time validator rejected the WHOLE ParsedFile when one site was malformed or over-bound, with no logging — and C++ legitimately emits empty-string parameterTypes entries ('' = unknown, the ReferenceSite.argumentTypes convention) for cv-only/ERROR-recovered types, so real repos fell into a permanent, silent warm-cache-miss reparse loop through the #1983-sensitive main-thread path (review finding 7, #2522). Now: '' entries are valid in type arrays; a malformed/over-bound site drops only itself (counted, warned once per load); only non-array garbage — evidence the serialization itself is untrustworthy — rejects the file. Deviation from plan §6 wording: validator-side tolerance replaces emit-side clamps — smaller diff, same asymmetry closed at the single chokepoint. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(scope-resolution): keep declarations in the union for reassigned callable cells The binding-lookup suppression for fact-constrained cells was wholesale: reassigning a declared function through its own name (greet = other; greet()) deferred the call to the solver, which then refused the lexical lookup that resolves the declaration — an unresolvable RHS yielded zero CALLS for a call that resolved pre-flow (review finding 8, #2522). Suppression now applies only to cells bound by FORMAL facts — its actual purpose (a parameter whose grammar emits no declaration binding must not adopt a same-named outer function). Copy/alias/store/load destinations keep their declaration as an inclusion seed (Andersen-style union). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(scope-resolution): count forfeited deferred sites in the budget-bailout warning On work-budget exhaustion the deferred invoke sites end the run with zero CALLS — free-call fallback and reference emission already skipped them — but the warning said 'ordinary graph emission remains untouched', which is false for exactly those sites. The warning context now carries the unresolved deferred-site count and the comment states the real cost (review finding: budget-bailout honesty, #2522). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * feat(scope-resolution): surface dropped property-dispatch keys in stats and warn payload The over-cap warning carried only a count; the dropped key NAMES were discarded and RunScopeResolutionStats had no field, so the PR-body claim 'includes them in resolver statistics' was unimplemented (review finding, #2522; reviewer ask on the fan-out cap). The warn payload now names up to 20 dropped keys and the stats carry propertyDispatchSkippedKeys. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * refactor(scope-resolution): drop producer-less ownerQualifiedName from formal sites No capture emitter anywhere produces @callable-flow.owner-qualified-name — the solver branch consuming it was unreachable in production, yet the field was typed, parsed, validated, and unit-tested with hand-built input (review finding 16, #2522; YAGNI). Re-add with a real producer if C++ qualified member declarators ever need it. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * refactor(scope-resolution): drop dead callable-flow knobs CallableFlowPassingMode 'callable-object' had no producer and no consumer distinguishing it, and CallableFlowCaptureOptions.extractCallArguments had no language providing it (unlike its live sibling extractCallCallee) — review finding 17, #2522 (YAGNI). The invocation-kind 'callable-object' is a different, live concept and stays. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ingestion): bind subscripted callable cells to the container, not the index terminalIdentifier iterates children in reverse, so tbl[i] = handler seeded the INDEX variable's cell (polluting a same-named formal) and tbl[i](7) looked up the callee under i in a different scope — no join, no CALLS edge for the classic function-pointer-array dispatch (review finding 12, #2522). Subscript nodes now recurse into their container field only, in both bindingIdentifier and terminalIdentifier, across the fielded grammars (C/C++/JS/TS/Python/Go/Java). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ingestion): make cross-function file-scope callable bindings resolvable Two stacked gaps killed the canonical C callback-registration pattern (fp assigned in init(), called in run()) — the exact #2437 false-safe this PR exists to fix (review finding H1, #2522): 1. isVisibleValueBinding only consulted assignment regions and formals, so a call in a function OTHER than the assigning one emitted no invoke fact. A declared callable-typed binding is now a value binding wherever its declaration is visible (visibleCallableSignature). 2. The C scope query had no @declaration.variable pattern for function- pointer declarators — void (*fp)(int); created no scope-tree binding, so the seed (init) and invoke (run) cells canonicalized to different keys and never joined. Both bare and initialized forms now bind. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(c): detect variadic parameters via the named variadic_parameter node tree-sitter-c materializes '...' as a named variadic_parameter node; the anonymous-token checks never matched, so variadic function-pointer signatures were emitted with a wrong fixed arity and no '...' sentinel (review finding, #2522). C++ is unaffected ('...' stays an anonymous token there); the token checks remain for such grammars. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ingestion): emit invoke facts for field-stored callable member calls The C ops-vtable pattern (o->run = handler; o->run(1)) captured the store but never the call — the member path in emitCallFacts bailed for languages without protocol methods, and the value-binding index recorded the member store under the OBJECT's name ('o'), not the member's ('run') (review finding 11/M3, #2522). Member destinations now also record their terminal member name, and a member call whose name-cell has a visible store emits an indirect invoke — gated on the store so plain accessor calls (map.get) stay inert. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cpp): disambiguate (obj->*ptr)() ERROR recovery by token order tree-sitter-cpp groups the recovered '->*' two ways depending on error-recovery cost (identifier lengths): [identifier, ERROR '->*m'] or [ERROR 'obj->*', identifier]. The recovery assumed the first shape, so the second silently swapped receiver/member and dropped the call site — the committed test passed only by name luck (review finding H2, #2522). The identifier's position relative to '->*' inside the ERROR now decides roles. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cpp): class members are never file-local in hasFileLocalCallableLinkage The name-keyed file-local set is populated from every static declaration, so an in-class 'static void make();' (external linkage — in-class static means no-instance) and any member sharing a name with a static free function were over-marked, refusing legitimate cross-file declaration/definition joins (review finding 13/M2, #2522). Method and Constructor defs now bypass the name-set, per the hook's own linkage-only contract. Deviation from plan step 13: the regression is a unit-level contract pin rather than an end-to-end join test — C++ merges out-of-line member definitions onto the member node by qualified identity, so the graph shape cannot discriminate the join refusal for members. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cpp): classify parameter passing mode from the declarator chain only A whole-subtree scan for reference_declarator inverted copy vs alias: void reg(void (*cb)(int& out)) marked the by-value pointer cb as 'reference' because of the NESTED parameter's int&, making the solver back-propagate formal targets into every caller's argument cell — alias semantics for a copy (review finding 14/M5, #2522). The chain walk never descends into nested parameter lists; a reference anywhere ON the chain (int& x, void (*&cb)(int)) still aliases. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ruby): bare identifiers are calls, not callable references Ruby parses a receiver-less zero-arg method call identically to a variable read, so 'action = process' — which CALLS process and stores its return — seeded action with the callable and minted a wrong CALLS edge from any dispatch through it, confirmed end-to-end (review finding 15/HIGH, #2522). New provider knob bareNamesAreCalls: a bare name that is not a provably local value binding and not an explicit reference form (method(:x), lambda/proc) emits no flow fact, on both the assignment and argument paths. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(go): pair multi-value := positionally instead of cross-wiring The shared field fallback took the FIRST LHS identifier and the LAST RHS identifier of Go's expression_list pair, cross-wiring 'a, b := f, g' and synthesizing a garbage comma-joined qualified name — the real relationships were silently dropped (review finding 16, #2522). extractAssignment may now return multiple pairs; Go pairs list entries positionally and emits nothing for a length mismatch (multi-return call RHS). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(java): drop get/test from callableProtocolMethods 'get' and 'test' collide with ubiquitous non-functional-interface APIs (Map/List/Optional/Future.get), so every ordinary container access emitted a spurious callable-object invoke fact — high-volume misleading graph facts with a cross-wiring risk on receiver-name reuse (review finding 17, #2522). Supplier.get/Predicate.test dispatch is deliberately traded away until the check can gate on the receiver's declared type. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(rust): pin the qualified-name no-degrade guard as a hard invariant Rust's scoped_identifier callable-reference capture over-includes unit enum variants and associated constants (Shape::Square seeds as if callable); they stay edge-free only because resolveSeedCandidates refuses to degrade an unresolved qualified name to a simple-name lookup (review finding 18, #2522). Capture-side type filtering would false-negative on tuple-variant constructors, so the guard IS the contract: documented as a hard invariant (Go's mis-shaped multi-value forms also rely on it) and pinned end-to-end. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(php): remove nonexistent optional_parameter node type tree-sitter-php has no 'optional_parameter' — defaults ride on simple_parameter — so the entry was dead weight the #1920 literal gate does not cover for capture-option Sets (review finding 19, #2522). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cobol): detect procedure pointers on fixed-format sources Two stacked defects made the feature a no-op on classic sequence-numbered fixed format (review finding 20/H3, #2522): 1. parseDataItemClauses' USAGE alternation knew POINTER but not PROCEDURE-POINTER/FUNCTION-POINTER, so the dataItems filter was dead. 2. The raw-line fallback scanned UNCLEANED text, where the sequence number satisfied the leading digits and the LEVEL NUMBER got captured as the pointer name. It now scans preprocessed lines and requires a letter- initial name (COBOL data names must contain a letter). 161 COBOL preprocessor/copy-expander tests stay green; free-format matrix case unchanged. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(cobol): skip comment lines in SET seed/copy scans A commented-out SET (indicator-column '*'/'/' or free-format '*>') produced a live seed and a false CALLS edge from dead code (review finding 21/M1, #2522). The scan now skips indicator-column comment lines and strips inline '*>' tails before matching. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(architecture): document callable-flow-only mode and skipped-key reporting The Callable-value flow section omitted scopeResolutionEdgeMode: 'callable-flow-only' — a real emit-pipeline branch that suppresses all ordinary emission for standalone providers (review finding 22, #2522) — and predated the skipped-key names/stats surfacing. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs(scope-resolution): correct value-ref resolution attribution and stale pdg-gating comments The value-ref contract comment claimed MethodRegistry resolution — the mechanism is the post-finalize findCallableBindingInScope walker owned by emitPropertyDispatchCalls (resolveReferenceSites skips these sites). Three 'only under --pdg' calleeIdSink comments were falsified by the #2437 gating change (callee-id-sink.ts's header was updated; these copies were missed). Review finding 23, #2522. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(ingestion): direct unit coverage for synthesizeCallableFlowCaptures The 1,100-line shared synthesizer had no test naming it — only downstream consumers were covered (review finding 24, #2522). Pins seed/invoke/ formal/argument emission, subscript container binding, store-gated member invokes, produced-value guards, and the bareNamesAreCalls knob over a minimal options object so assertions target the synthesizer's own semantics. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(resolvers): deepen shallow-language coverage; fix Kotlin/Swift reassignment gaps it exposed Adds the COBOL SET x TO y copy-branch scenario and conditional-assignment scenarios for Kotlin, C#, Swift, and Dart (10 languages previously had one generic case each — review finding 25, #2522). The new scenarios exposed two real capture gaps, fixed here: - tree-sitter-kotlin's 'assignment' node is fieldless, so nested reassignments (chosen = ::target inside a block) produced no flow facts; Kotlin's extractAssignment now decomposes it positionally. - tree-sitter-swift fields its assignment as target:/result:, neither in the shared fallback's field lists; both added. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(infra): literal-validation gate for callable-capture option Sets The #1920 gate validates query literals and exported configs but not the module-private *_CALLABLE_CAPTURE_OPTIONS Sets consumed by the shared synthesizer — a typo'd node type silently captures nothing (PHP shipped a dead 'optional_parameter'; review finding 26, #2522). Every <key>NodeTypes Set literal is now validated against its language's grammar; name-carrying sets (callableProtocolMethods, memberPointerOperators) are deliberately outside the contract. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(storage): centralize corrupt-fixture casts into makeStoreEntry The callable-flow store tests scattered 'as unknown as' double-casts per fixture (review finding 27, #2522; standing no-as-any rule). One typed helper now owns the single controlled escape hatch for building malformed serialization-boundary payloads. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * chore(bench): refresh capture fingerprints after review fixes python-scope: the committed baseline (8d5c3699) never matched this branch's code — CI's benchmarks arm was red on the PR head (review finding 2/HIGH, #2522); regenerated (a99e69ab), scaling 1.04 in budget. scope-capture: ruby/cpp/swift/java/kotlin drifted from the review-fix commits (bare-name suppression, passing modes + ->* recovery, assignment fields, protocol narrowing, positional assignment); all 14 languages re-verified PASS with ratios <= 1.18 against the 1.5 budget. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * chore(docs): untrack docs/plans working documents docs/ is gitignored (local working docs); the plan files were force-added past the ignore. Untracked from the index only — they stay on disk. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test(golden): regenerate captures goldens after callable-flow review fixes The per-language digest guards (csharp/go/php/python/ruby/rust/swift) locked the pre-fix capture output; the review-fix series intentionally changed it — store-gated member invokes, subscript container binding, Ruby bare-name suppression, Swift assignment fields, positional pairing. Regenerated with UPDATE_GOLDEN=1; clean verification run 59/59; all other parity/golden guards (pipeline-graph, spring-route, python parity) pass untouched at 33/33. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(ingestion): prototypes are callees, not callable value cells The cross-function visibility fix indexed EVERY signature-bearing declaration as a value binding — including plain function/method prototypes (void f(int);). Every call to a declared function then became an indirect invoke, and with emitCanonicalInvokeReference (C/C++) minted a free-call reference that resolved through the registry, bypassing the precise passes' two-phase/ambiguity/subobject suppression — eight phantom CALLS edges in the cpp resolver suite on CI. Only declarations whose binding identifier sits under a pointer/ parenthesized declarator (callable-typed variables like void (*fp)(int);) create value cells now. cpp resolver suite 331/331; callable-value-flow + C/C++ suites 181/181 (the cross-function fp regression still passes); cpp fingerprint rebaselined, both bench gates PASS. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> --------- Co-authored-by: Claude Fable 5 <noreply@anthropic.com>	2026-07-17 17:20:02 +01:00
Gergő Magyar	95f87fc12a	perf(ingestion): Linux-kernel-scale analysis — worker-pool parse + finalize O(n²) + scope-resolution memory wall (#1983) (#2038) ... * fix(ingestion): reduce parse-phase memory for huge repos (#1983) Stop retaining full parse-cache chunks in RAM alongside the merged graph, slim on-disk shards, defer worker ParsedFile emission for scope-resolver languages, and add GITNEXUS_DEBUG_HEAP probes for OOM diagnosis. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ingestion): address #2038 tri-review findings (parse-phase memory) Resolves the confirmed review findings on PR #2038: - P1: thread exportedTypeMap through the sequential parse path (processParsingSequential) so a no-worker run over a partially-warm cache no longer silently drops the sequential-miss files' exported types. Cache hits made exportedTypeMap.size > 0, suppressing the end-of-loop buildExportedTypeMapFromGraph rebuild, but the sequential path never populated the map. Regression test added (fails on the pre-fix tree, passes after) plus a fully-sequential differential oracle. - P2: saveParseCache builds its on-disk index from hashes actually written/copied (writtenKeys), never a usedKeys hash whose shard write or copy was skipped — no more phantom index entries. - P2: add a unit test asserting SCOPE_RESOLUTION_LANGUAGES stays in sync with SCOPE_RESOLVERS (asymmetric drift would lose a language's ParsedFile). - Backfill cache coverage: loadParseCacheChunk missing/corrupt -> undefined, pruneCache onDiskKeys branch, slim preserves nodes, saveParseCache copy-evicted-shard round-trip. - Cleanups: single-source heap-probe gating via isDebugHeapEnabled(); hoist the per-chunk mkdir in persistParseCacheChunk behind a process-scoped Set; gate COBOL's unused worker-side ParsedFile extraction (graph nodes still come from cobolPhase) while keeping fileCount/progress unconditional. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(ingestion): remove dead worker-side ParsedFile extraction After #2038 gated worker `ParsedFile` emission behind `!isScopeResolutionLanguage(language)`, and with all 16 SupportedLanguages registered in SCOPE_RESOLVERS, that gate was structurally always true — the worker already produced no ParsedFiles and scope-resolution re-extracts each file from source on the main thread (run.ts). Remove the now-dead machinery: - Drop both worker `extractParsedFile` call-sites (tree-sitter processFileGroup + the standalone-provider branch) and the `result.parsedFiles.push`. The standalone branch keeps fileCount/onFileProcessed per file. `result.parsedFiles` stays declared but empty (field removal deferred). - Remove the now-orphaned `scopeSourceKind` var + `ScopeCaptureSourceKind`/`extractParsedFile`/`isScopeResolutionLanguage` imports. - Delete the consumerless `migrated-languages.ts` (isScopeResolutionLanguage + SCOPE_RESOLUTION_LANGUAGES) and its drift-guard test — parse-worker was their only importer. Also improves AGENTS.md "shared ingestion code must not name languages" compliance. `extractParsedFile` and the scope-extractor-bridge stay (scope-resolution/run.ts + Vue resolver use them). Behavior-preserving: worker-sequential-parity passes before and after; tsc/eslint clean; no baseline/golden drift. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(ingestion): worker-pool-only parsing; remove sequential parser (#1983) Completes the #1983 huge-repo parse-OOM effort by making the worker pool GitNexus's sole parse path. Parallel serialization (the perf core): workers serialize their ParsedFiles to a disk store in parallel and stream them back to scope-resolution, so the main thread no longer re-parses every file (the tree-sitter native-memory leak that caused the OOM). Adds chunk merge-pipelining + work-proportional chunk sizing so the pool stays saturated. Remove the sequential parser: `--workers 0`, `GITNEXUS_WORKER_POOL_SIZE=0`, and `skipWorkers` now hard-error (no silent degrade — #1741); the small-repo threshold no longer selects an in-process path; pool creation stays lazy / cache-miss-gated so warm all-hit runs never spawn workers. Worker-path parity fixes — removing sequential surfaced two pre-existing gaps that tiny-fixture tests had masked by running below the worker threshold, both fixed by carrying per-file metadata as DATA across the worker boundary (never re-parsing on the main thread, preserving the OOM fix): - C++: templateConstraints wired into worker node identity (SFINAE overload disambiguation) + ADL / inline-namespace capture side-channel serialized onto the ParsedFile. - Kotlin: companion-scope side-channel serialized the same way (companion / static dispatch). Validation: tsc + build clean; full suite green (10,190 pass — the only deterministic failures were the now-fixed C++/Kotlin worker-path gaps; the 2 remaining full-run failures are pre-existing load flakiness, green in isolation); cpp-pipeline benchmark stays linear on a 1-worker pool. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(ingestion): wire C static-linkage side-channel + ADL O(1) collect + tri-review cleanups (#1983) Follow-up to the worker-pool-only refactor, from a tri-review of the parse path. - C static-linkage side-channel (P1): cProvider had no collect/applyCaptureSideChannel, so on the now-sole worker path C `static` file-local marks were lost across the worker boundary -> false cross-file CALLS edges + over-broad #include wildcard visibility on every C analysis (the Linux kernel is C). Mirror the C++/Kotlin wiring: serialize `staticNames` per file onto ParsedFile.captureSideChannel and restore it on the main thread (no re-parse). + a worker-path regression test (the existing c-static-isolation fixture passed vacuously — its collision resolves via #include before the global free-call fallback ever consults static-linkage). - captureSideChannel `kind` discriminant: add `kind:'cpp'`/`kind:'c'` tags + guards (Kotlin already had one) now that C/C++/Kotlin share the single generic field. - Perf: collectCppAdlSideChannel scanned the whole argInfoBySite/noAdlSites maps per file (O(F^2) per sub-batch, ~100M parseSiteKey calls at kernel scale). Add per-filePath lockstep indexes -> O(1) collect; serialized snapshot byte-identical. - Cleanups: inline the one-line processParsingWithWorkers wrapper into processParsing; drop the always-empty WorkerExtractedData.calls/assignments/constructorBindings fields; remove the voided astCache param from processParsing; refresh stale "sequential fallback" JSDoc. Validation: tsc + build clean; cpp 297/297, c 8/8 (incl. the new worker-path static-linkage guard), typescript + parsedfile-store green; cpp ADL benchmark stays linear. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(scope-resolution): index C/C++ #include resolution in finalize (O(n²)→O(n)) Kernel-scale C/C++ analysis ground in finalizeScopeModel because three per-#include operations each did a full O(F) scan with no index — the finalize O(n²) that surfaced once the #1983 parse-phase OOM was fixed: - expand{C,Cpp}WildcardNames: parsedFiles.find() per wildcard edge → O(R·F) - resolveImportTarget: new Set(allFilePaths) rebuilt per #include - resolveCImportTarget: suffix-match scanned all workspace paths Each is replaced with a WeakMap-per-pass index keyed on the stable parsedFiles/allFilePaths references that scope-resolution run.ts passes once per pass: - Map<ScopeId,ParsedFile> for wildcard expansion (c/static-linkage.ts + cpp/file-local-linkage.ts) - memoized augmented header set (c/scope-resolver.ts + cpp/scope-resolver.ts) - basename-bucketed suffix index in resolveCImportTarget (c/import-target.ts), shared by C and C++ since resolveCppImportTarget delegates to it Collapses the C/C++ finalize from O(R·F) to O(R+F). Pure-perf, byte-identical edge output: 962 targeted tests green (490 C + 472 C/C++ scope-resolution); the basename index preserves the exact endsWith('/'+target) match and the fewest-path-components-then-lexicographic tie-break. The kernel's ~25-30k .h headers are classified C++, so both providers must be fixed. Proven on the Linux kernel: the C finalize completed (sr-post-finalize lang=c → sr-end lang=c), which the pre-fix run never reached in 16+ min of grinding. Build-independent follow-ups (separate from this finalize fix), documented for later: emitFreeCallFallback same-name buckets (emit phase), buildGraphNodeLookup + precount global setup, the ParsedFile store-load, the dart/go/ruby expand-wildcards .find siblings, and the ~26GB scope-resolution memory floor (full kernel completion needs >~40GB RAM). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(bench): regenerate C scope-capture baseline for the #1983 c-static-linkage-worker fixture bench/scope-capture/measure.mjs fingerprints emitCScopeCaptures over the lang-resolution/c-* fixture corpus. The #1983 PR added the c-static-linkage-worker fixture (caller.c/lib.c/lib.h/local.c — the worker-path static-linkage side-channel test) but did not regenerate the C baseline, so `--check` has been red on this branch (main, lacking the fixture, still matches 0de009b). Pure fixture-corpus drift — no c/captures.ts or query change branch-vs-main, existing fixtures' captures byte-identical (c-captures.test.ts 45/45), scaling stays linear (~0.97). Regenerated: 0de009b -> 39f3a83. Bench now PASS (14 languages). Unrelated to the finalize O(n²) fix. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(scope-resolution): lower kernel-scale resident memory floor + setup cost Reduce the scope-resolution resident-memory floor and setup throughput on huge repos (Linux kernel), the wall that remains after #1983 (parse OOM) and the finalize O(n^2) fix (b71c77b8). Five units; all preserve byte-identical edge output (C fixture 177n/255e + c/cpp/cross-file/php/static-linkage suites green, 619 tests). U1 (src/cli/analyze.ts): RAM-aware auto heap-cap. Replace the hardcoded 16384MB cap with computeHeapCapMb = max(16384, floor(0.75*effectiveRAM)), where effectiveRAM = min(os.totalmem(), process.constrainedMemory()) with the unconstrained-sentinel guard. Add --max-semi-space-size=128 on the respawn. A user-supplied NODE_OPTIONS heap still wins (no re-exec). Verified: 23973MB on a 31964MB box, 16384 floor on small machines, cgroup-aware, sentinel safe. U2 (src/storage/parsedfile-store.ts, .../pipeline/phase.ts): export forceGc() and call it at the per-language eviction boundary, so a finished language's ParsedFiles are reclaimed before the next language's store-load instead of collected lazily under the next pass's allocation pressure (which at cap>=RAM degrades into swap-thrash). Measured on a real drivers/net/ethernet run: C 2113->894MB and C++ 1754->1057MB reclaimed at the boundary (no fragmentation defeat). Answers the plan's Open Question 1. U3 (src/storage/parsedfile-store.ts): intern def objects by nodeId in the load reviver so a SymbolDefinition's three serialized copies (localDefs / scope.ownedDefs / scope.bindings[].def) collapse to one shared object on load. Per-shard def pool (a def's copies are shard-local). Measured ~42% off the def-object retained heap (3->1; 1.8M->600k distinct objects on 600k defs). U4 (.../passes/free-call-fallback.ts): memoize pickUniqueGlobalCallable's post-filter candidate list per (name, callerFilePath), only when no per-caller visibility filter applies (the list is then a pure function of name+file), so repeated free calls of one name from a file reuse the same-name-bucket scan instead of re-walking a potentially huge bucket per site. The cached array is read-only-consumed by the .filter()-based arity/overload narrowers. Exported pickUniqueGlobalCallable + buildGlobalCallableIndex and added an equivalence test (memoized == un-memoized reference for every (name, file, arity), including warm-cache repeats and cross-file file-local exclusion). U5 (.../pipeline/phase.ts): replace the O(L*F) per-language precount + repeated scannedFiles.filter() with a single O(F) partition-by-language pass; bracket buildGraphNodeLookup with scope-setup-nodeLookup heap probes so the long setup is no longer silent. Plan: docs/plans/2026-06-06-001-perf-kernel-scope-resolution-memory-plan.md (U6 out-of-core global index deferred). Note: the kernel's full C++ pass floor (~20k headers + the 8.8GB graph) likely still exceeds 24GB by itself, which is why U6 remains the only unit that clears the wall. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(test): match OOM-guidance e2e assertions to the U1 reworded hint The analyze-heap-oom-e2e real-child-OOM test still asserted the pre-U1 wording ('...out of memory.' + a hardcoded 24576 cap). U1 reworded the hint to mention the auto heap-cap and use a <MB> placeholder, so the three toContain substrings no longer matched (the assertion at line 62 failed on all platforms). Update them to the current message. The unit twin (analyze-heap-respawn) was already updated in 85bfc216; this integration test was missed by the targeted local run. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(lbug): U6a — deterministic id-sorted graph output behind GITNEXUS_SORT_GRAPH_OUTPUT First increment of U6 (out-of-core scope-resolution). Adds an optional deterministic ordering of node + relationship CSV rows by their unique graph id, behind GITNEXUS_SORT_GRAPH_OUTPUT (default OFF = today's graph-insertion order, byte-identical — the iterator is returned untouched). With the flag ON the CSV becomes a pure function of the node/edge SET rather than of emit order. This is the structural enabler for the windowed/out-of-core resolve (U6b-U6d): csv-generator.ts:518 currently iterates graph.iterRelationships() in insertion order with NO terminal sort, so any deviation from parsedFiles-order emit would change bytes. With U6a on, a windowed emit need only reproduce the same edge SET, not the global insertion order — removing the single largest byte-identical hazard from every later windowing step. Verified: default off keeps the existing csv-pipeline suite byte-identical; on, node rows are id-sorted and output is independent of graph insertion order (set-build) with the same node/edge set. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(storage): U6d foundation — disk-backed scope store + lazy ScopeTree Adds scope-index-store.ts: persistScopeShards (per-file scope shards via the proven mapReplacer + def-interning reviver) + DiskBackedScopeTree, a lazy ScopeTree that serves getScope from a bounded LRU of decoded shards plus a small resident skeleton (scopeId -> {shard, childIds, parent}). Exports makeInterningReviver from parsedfile-store for reuse. This is the contained, highest-risk mechanism of U6d (out-of-core scope resolution): the emit passes reach the heavy per-Scope binding payload (~17-20GB on the kernel) ONLY through scopeTree.getScope (a point lookup) and getChildren — they never read parsed.scopes directly — so moving that payload to disk behind getScope is transparent. Every consumer reads a Scope BY VALUE, so a value-faithful disk round-trip is byte-identical to resolution. Proven in isolation: DiskBackedScopeTree is value-identical to buildScopeTree for getScope/getChildren/getParent/getAncestors/has/size across multiple files and after LRU eviction, and preserves the def-identity collapse (ownedDefs[i] === binding.def). Nothing wires it yet (the resolution-pipeline integration is the next increment) — zero production impact; default off. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(scope-resolution): U6d integration — seal scopeTree to disk before emit (GITNEXUS_DISK_SCOPE_INDEX) Wires the U6d out-of-core scope index into the live pipeline behind GITNEXUS_DISK_SCOPE_INDEX (default OFF = byte-identical). When on: - finalize-orchestrator builds a TransitionalScopeTree (validated, fully resident) instead of buildScopeTree, so finalize/propagate/resolve are unchanged. - After resolve, before emit, run.ts seals it: persists the scopes to a file-sharded scope-index-store, swaps the model's scopeTree to disk-backed serving from the inside (the frozen bundle can't be reassigned, but the wrapper nulls its own resident backing), and drops the heavy Scope.bindings payload from all THREE holders — the model's tree (seal), the caller's preExtractedParsedFiles, and run.ts's own parsedFiles (scope-stripped copies for emit). Emit reads scopes only via scopeTree.getScope (a point lookup, now disk-backed + LRU) — verified it never reads parsed.scopes. Purpose: lower the per-language resident PEAK (kernel C pass ~20→~12 GB by moving the ~8-9 GB scope payload to disk) so the analysis fits on smaller-RAM machines. At >=24 GB the full kernel already fits with U1-U5 (U2's 8.7 GB inter-language forceGc reclaim keeps each pass under cap) — empirically confirmed — so this is the sub-24 GB lever, not needed at 24 GB. Byte-identical evidence: DiskBackedScopeTree/TransitionalScopeTree return value-identical scopes vs buildScopeTree (getScope/getChildren/getParent/ getAncestors, across files + after LRU eviction + post-seal); emit reads only getScope + referenceSites; flag-off (394 tests) and flag-on-resident (91 tests) resolver suites stay green; an end-to-end A/B on a 212-file C+cpp+rust subset produced identical 17,444 nodes / 31,343 edges with the seal firing per language (c: 410→141 MB reclaimed). Kernel-scale peak-drop measurement pending the in-flight verdict run freeing memory. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(scope-resolution): U6d — id-back workspaceIndex so the disk seal can reclaim scopes The kernel run revealed the contained scopeTree seal didn't lower the heap: WorkspaceResolutionIndex held Scope OBJECTS (classScopeByDefId / moduleScopeByFile), built from every ParsedFile and live through emit, so the ~28k module + class scopes stayed pinned past the seal (sr-seal-pre 17,583 -> sr-seal-post 17,771 MB, no drop). It was the sole residual Scope-object holder (SemanticModel holds none). Fix: classScopeByDefId / moduleScopeByFile become id-backed ScopeByKeyView instances — a ReadonlyMap<K, Scope> facade over a K->ScopeId map + the scopeTree, whose .get fetches via scopeTree.getScope(id). The index now pins only ids, so once the tree seals to disk the scopes become collectible. Byte-identical: the view returns the same Scope the resident tree holds (or a value-identical revived one in disk mode), and iteration keeps the old insertion order. buildWorkspace ResolutionIndex takes an optional scopeTree (live pipeline passes it); without it (unit tests) the legacy direct Scope-object maps are returned unchanged. Verified byte-identical: 733 tests across workspace-index / imported-return-types / c / cpp / cross-file / go / java. Kernel peak-drop re-measurement to follow. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(scope-resolution): U6d — precompute exportedCallableByName (fix disk-getScope thrash) The workspaceIndex id-backing freed the kernel scopes but exposed a throughput collapse: findExportedDefByName's workspace fallback (walkers.ts:1019) scanned EVERY module scope's bindings per unresolved free call, and under the U6d disk-backed scopeTree each module-scope access faulted a shard in from disk — lib ON went ~1min -> ~7.5min. Fix: precompute the fallback result once into WorkspaceResolutionIndex.exportedCallableByName (simpleName -> first module-local callable def, first-file-wins — the exact semantics the scan returned), built from the resident module-scope bindings at index-build time. findExportedDefByName now does an O(1) lookup with zero disk reads. Result: lib ON ~7.5min -> 21s (cache-warm), byte-identical 17,444/31,343; 758 tests green across workspace-index + c/cpp/cross-file/go/python. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: rename cryptic U-unit codes to descriptive names in comments The plan-unit shorthand (U3/U4/U6a/U6d/...) was meaningless in the code. Renamed in comments + test descriptions (no behavior change, byte-identical): out-of-core scope index (was U6) deterministic output (was U6a) disk-backed scope seal (was U6d) def-object interning (was U3) free-call candidate cache (was U4) Also renamed throughout the PR title/summary. Pushed commit messages keep their original U-codes as historical record. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(ingestion): durable ParsedFile shards for warm-cache coverage (#2038) On a warm re-analyze where every chunk is a parse-cache HIT, no parse worker runs, the run-scoped ParsedFile store is cleared at parse start, and the cached ParseWorkerResult carries no ParsedFiles (the worker writes them to the store and empties them from the message). Scope-resolution then found an empty store and fell back to main-thread extractParsedFile — re-opening the #1983 tree-sitter native-leak OOM the disk store closes (abhigyanpatwari review on parse-cache.ts). Fix: workers ALSO write their ParsedFiles to a durable, content-addressed store (parsedfile-cache/) keyed by chunk hash, mirroring the parse cache's lifecycle (version-gated by PARSE_CACHE_VERSION, pruned in lockstep to the surviving keys). On a warm hit the chunk's durable shards are byte-COPIED into the run-scoped store (no re-parse, no re-serialize -> byte-identical), so scope-resolution streams them exactly as on a cold run. A coherence gate re-dispatches the worker whenever a cached chunk's durable shards are missing (migration / pruned / version-stale) -- never the main-thread extract. - worker-pool/parse-worker: thread chunkHash through dispatch->job->flush (incl. split/requeue) so the worker tags its durable shard by content - parsedfile-store: durable persist / restore / index / prune API (sibling dir, never cleared per run); content-addressing makes stale reuse impossible - parse-impl: load durable index, gate the cache hit on durable coverage, restore on hit, dispatch chunkHash on miss - run-analyze: prune+save the durable store to the parse cache's surviving keys - saveParseCache returns its written keys (the durable keepKeys) Verified on linux/lib: warm preExtractedHits = full coverage (520/207/1, zero main-thread re-parse), byte-identical cold==warm (17,456n/31,353e), warm 8.5x faster. New two-run + mixed-mode + coherence-gate regression test. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(ingestion): clear stale scope-index-store shards on each seal (#2038) The disk-backed scope index writes sequential s<n>.json shards into a shared <storagePath>/scope-index-store/ dir, with the index resetting per persistScopeShards call. A seal that writes fewer shards than a previous one (a later language with fewer files, or a re-run of a shrunken repo) left stale tail shards on disk indefinitely -- never read by the disk-backed tree, but multi-GB on kernel-scale repos. Add clearScopeIndexStore() and clear at the start of persistScopeShards: the previously sealed language has finished emit and been released before the next seal runs, so its DiskBackedScopeTree never reads those shards again. Unit tests: a stale prior-run shard is removed, a fewer-files re-seal leaves no tail shards, and the helper is idempotent. Addresses abhigyanpatwari review on run.ts (disk hygiene for the GITNEXUS_DISK_SCOPE_INDEX path). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-06-06 22:46:34 +01:00